Query 026505
Match_columns 237
No_of_seqs 140 out of 575
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:53:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 1.6E-37 3.4E-42 291.2 18.3 171 57-233 75-288 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 8.8E-39 1.9E-43 278.8 5.5 166 62-233 1-184 (244)
3 KOG0799 Branching enzyme [Carb 99.9 2.7E-22 5.9E-27 190.1 12.3 157 61-223 104-286 (439)
4 TIGR03472 HpnI hopanoid biosyn 74.0 74 0.0016 29.4 13.5 99 59-170 40-148 (373)
5 cd06439 CESA_like_1 CESA_like_ 72.1 59 0.0013 27.3 10.8 101 55-172 24-133 (251)
6 PHA03054 IMV membrane protein; 63.5 13 0.00028 27.0 3.8 36 1-36 31-66 (72)
7 TIGR03111 glyc2_xrt_Gpos1 puta 59.6 1.6E+02 0.0035 27.9 13.5 26 57-85 46-71 (439)
8 TIGR03469 HonB hopene-associat 57.5 1.6E+02 0.0035 27.2 15.0 115 57-179 37-167 (384)
9 cd02511 Beta4Glucosyltransfera 55.2 53 0.0011 27.8 7.0 96 61-173 1-99 (229)
10 PRK14583 hmsR N-glycosyltransf 53.8 1.3E+02 0.0029 28.4 10.2 88 58-160 73-169 (444)
11 PF12575 DUF3753: Protein of u 51.3 26 0.00056 25.5 3.7 34 1-34 31-64 (72)
12 PHA02650 hypothetical protein; 48.0 34 0.00073 25.4 3.9 27 11-37 42-68 (81)
13 PF04202 Mfp-3: Foot protein 3 44.9 14 0.00031 26.4 1.5 20 19-38 3-22 (71)
14 PF14812 PBP1_TM: Transmembran 44.7 1.3 2.7E-05 33.0 -4.0 18 1-18 53-70 (81)
15 cd02520 Glucosylceramide_synth 41.6 1.9E+02 0.0041 23.4 9.3 38 60-100 1-41 (196)
16 PRK11204 N-glycosyltransferase 41.1 2.9E+02 0.0064 25.5 13.5 102 56-172 50-161 (420)
17 COG3117 Uncharacterized protei 38.9 68 0.0015 27.6 5.0 55 16-70 4-66 (188)
18 PRK07132 DNA polymerase III su 38.3 1.5E+02 0.0033 27.0 7.6 99 57-155 14-128 (299)
19 PHA02844 putative transmembran 37.6 61 0.0013 23.7 3.8 25 11-35 41-65 (75)
20 cd02525 Succinoglycan_BP_ExoA 37.2 2.3E+02 0.0051 23.2 9.1 93 61-171 1-104 (249)
21 PHA02819 hypothetical protein; 34.7 68 0.0015 23.2 3.7 26 11-36 39-64 (71)
22 PF04309 G3P_antiterm: Glycero 34.2 33 0.00072 29.1 2.4 33 63-98 21-53 (175)
23 PF12273 RCR: Chitin synthesis 33.4 30 0.00064 27.4 1.9 11 15-25 2-12 (130)
24 PHA02692 hypothetical protein; 32.4 73 0.0016 23.1 3.5 21 1-24 31-51 (70)
25 PHA02975 hypothetical protein; 31.2 90 0.0019 22.5 3.8 21 14-34 40-60 (69)
26 COG1216 Predicted glycosyltran 30.8 2.5E+02 0.0055 24.9 7.7 108 59-176 2-115 (305)
27 COG1954 GlpP Glycerol-3-phosph 30.4 57 0.0012 27.8 3.1 101 64-181 26-128 (181)
28 TIGR01310 L7 60S ribosomal pro 30.4 3.3E+02 0.0071 24.2 8.1 98 57-174 69-168 (235)
29 cd02526 GT2_RfbF_like RfbF is 28.7 2.9E+02 0.0063 22.6 7.4 91 65-170 2-97 (237)
30 PF04122 CW_binding_2: Putativ 27.9 1.1E+02 0.0024 22.2 4.0 35 125-159 3-37 (92)
31 cd02514 GT13_GLCNAC-TI GT13_GL 27.8 1.5E+02 0.0032 27.7 5.7 98 62-163 2-114 (334)
32 PF12273 RCR: Chitin synthesis 27.8 69 0.0015 25.3 3.1 19 17-35 1-19 (130)
33 PF07747 MTH865: MTH865-like f 27.5 22 0.00047 26.1 0.1 40 119-172 32-71 (75)
34 cd04192 GT_2_like_e Subfamily 26.4 2.9E+02 0.0062 22.3 6.8 25 145-171 81-105 (229)
35 COG1215 Glycosyltransferases, 25.6 5.2E+02 0.011 23.6 9.5 106 59-173 53-165 (439)
36 PF07172 GRP: Glycine rich pro 25.5 68 0.0015 24.4 2.6 15 23-37 6-20 (95)
37 cd04184 GT2_RfbC_Mx_like Myxoc 25.1 3.5E+02 0.0076 21.4 8.5 94 60-170 1-105 (202)
38 PRK14716 bacteriophage N4 adso 25.0 1.6E+02 0.0034 29.0 5.6 103 55-163 61-175 (504)
39 PF06718 DUF1203: Protein of u 24.6 3.2E+02 0.0069 21.6 6.3 85 63-155 16-106 (117)
40 PF00535 Glycos_transf_2: Glyc 23.3 3.2E+02 0.0069 20.3 9.5 99 64-177 2-110 (169)
41 COG4746 Uncharacterized protei 22.5 65 0.0014 23.8 1.8 39 120-172 38-76 (80)
42 PRK05529 cell division protein 20.8 61 0.0013 28.8 1.7 33 2-34 24-56 (255)
43 PRK14762 membrane protein; Pro 20.6 1.3E+02 0.0027 17.5 2.4 15 16-30 4-18 (27)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=291.22 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=134.3
Q ss_pred CCCceEEEEEEeC-CCCChHHHHHHHHhhhcCCCeeEEEEeCCCCCccc------c-------ccCCcceeceecCCcce
Q 026505 57 DGPAKIAFLFLAR-RELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDE------L-------TTRSKFFYGRQLSNSIQ 122 (237)
Q Consensus 57 ~~~~KiAfLIlah-~~~~~~~l~~rl~~~ld~~~~~iyIHvD~k~~~~~------~-------~~~~~vf~~r~i~~r~~ 122 (237)
..++||||||++| ++.+| ++||++++|+++++||||+|+|++..+ . ...+||+ ++.++..
T Consensus 75 ~~~~r~AYLI~~h~~d~~~---l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~---vl~k~~~ 148 (421)
T PLN03183 75 DKLPRFAYLVSGSKGDLEK---LWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVY---MITKANL 148 (421)
T ss_pred CCCCeEEEEEEecCCcHHH---HHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEE---EEeccee
Confidence 3579999999999 66788 999999999999999999999986421 0 1245676 5678899
Q ss_pred eecCcccHHHHHHHHHHHHhc-CCCCCEEEEecCCCccCCChHH-HHHHHhcCC-CCceeccccC---CCCccCCC----
Q 026505 123 VAWGESSMIAAERLLLEAALE-DPANQRFVLLSDSCVPIYNFSY-VYKYLMASP-RSFVDSFLDR---KESRYNPK---- 192 (237)
Q Consensus 123 V~WGg~SlV~Atl~Ll~~Al~-~~~~~~f~LLSGsD~PL~s~~~-I~~fL~~~~-~~FI~~~~~~---~~~Ry~~~---- 192 (237)
|.|||+|||+|||++|+.+++ ..+|||||+|||+||||+++++ |+.|+..++ +|||++..+. ...|+.+.
T Consensus 149 V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~p 228 (421)
T PLN03183 149 VTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDP 228 (421)
T ss_pred eccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecC
Confidence 999999999999999999998 4789999999999999999999 577777754 9999975432 11122110
Q ss_pred ----------CC----CCC-CCCccccccceeeccHHHHHHhhc--C--cccHHHhcccc
Q 026505 193 ----------MS----PTI-PKGKWRKGSQWITLIRRHAEVIVD--D--EIIFPVFKKCC 233 (237)
Q Consensus 193 ----------~~----p~i-~~~~~~~GSqW~sLtR~~aeyIl~--d--~~i~~~F~~~c 233 (237)
+. ..+ .+.++++||||++|||++|+||++ | +.++.+|.+.|
T Consensus 229 gl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t 288 (421)
T PLN03183 229 GLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNF 288 (421)
T ss_pred ceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcC
Confidence 00 012 357899999999999999999996 2 46666666643
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=8.8e-39 Score=278.81 Aligned_cols=166 Identities=29% Similarity=0.463 Sum_probs=109.9
Q ss_pred EEEEEEeCC-CCChHHHHHHHHhhhcCCCeeEEEEeCCCCCc---cc----cccCCcceeceecCCcceeecCcccHHHH
Q 026505 62 IAFLFLARR-ELPLDFLWGSFFEIADVENFSIFIHSAPGFVF---DE----LTTRSKFFYGRQLSNSIQVAWGESSMIAA 133 (237)
Q Consensus 62 iAfLIlah~-~~~~~~l~~rl~~~ld~~~~~iyIHvD~k~~~---~~----~~~~~~vf~~r~i~~r~~V~WGg~SlV~A 133 (237)
|||||+||+ +++| ++++++.++++++.||||+|+|++. ++ ....++++ ++++|++|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~---~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~---~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQ---LERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVH---FVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHH---HHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEE---E-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHH---HHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhcccCCcee---ecccccccccCCccHHHH
Confidence 799999988 7777 9999999999999999999999641 11 12334554 788899999999999999
Q ss_pred HHHHHHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhcC-C-CCceeccccCCC---CccCCC----CCCCCCCCccc
Q 026505 134 ERLLLEAALE-DPANQRFVLLSDSCVPIYNFSYVYKYLMAS-P-RSFVDSFLDRKE---SRYNPK----MSPTIPKGKWR 203 (237)
Q Consensus 134 tl~Ll~~Al~-~~~~~~f~LLSGsD~PL~s~~~I~~fL~~~-~-~~FI~~~~~~~~---~Ry~~~----~~p~i~~~~~~ 203 (237)
|+.||++|++ +++|+|||+|||+|+||+|+++|++||+++ + .+|++++..+.. .||.+. +.+.+...+++
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 9999999999 789999999999999999999999999997 3 788987654321 455433 11222223899
Q ss_pred cccceeeccHHHHHHhhcCcccHHHhcccc
Q 026505 204 KGSQWITLIRRHAEVIVDDEIIFPVFKKCC 233 (237)
Q Consensus 204 ~GSqW~sLtR~~aeyIl~d~~i~~~F~~~c 233 (237)
+|||||+|||++|+||++|++..+.++++|
T Consensus 155 ~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~ 184 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILDDPNYRPKLKKYF 184 (244)
T ss_dssp EE-S--EEEHHHHHHHHH-HHHHHHHHHHT
T ss_pred ccceeeEeeHHHHHHhhhhHHHHHHHHHhh
Confidence 999999999999999998876666666554
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.88 E-value=2.7e-22 Score=190.11 Aligned_cols=157 Identities=19% Similarity=0.181 Sum_probs=126.1
Q ss_pred eEEEEEEeCCCCChHHHHHHHHhhhcCCCeeEEEEeCCCCCcc--cc-----ccCCcceeceecCCcceeecCcccHHHH
Q 026505 61 KIAFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFD--EL-----TTRSKFFYGRQLSNSIQVAWGESSMIAA 133 (237)
Q Consensus 61 KiAfLIlah~~~~~~~l~~rl~~~ld~~~~~iyIHvD~k~~~~--~~-----~~~~~vf~~r~i~~r~~V~WGg~SlV~A 133 (237)
=+||+.++|++.++ ++|+++++++|++.++||+|+++... .. ...+||+ +++++..|.|||.|+++|
T Consensus 104 ~~a~~~~v~kd~~~---verll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~---v~~k~~~v~~~G~s~l~a 177 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQ---VERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVI---VLPKRESVTYGGHSILAA 177 (439)
T ss_pred ceEEEEeecccHHH---HHHHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceE---EeccccceecCCchhhHH
Confidence 46788888999999 99999999999999999999998632 11 1234554 456799999999999999
Q ss_pred HHHHHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCCCceeccccC--CCCc--c-C---C--------CCCC
Q 026505 134 ERLLLEAALED-PANQRFVLLSDSCVPIYNFSYVYKYLMA-SPRSFVDSFLDR--KESR--Y-N---P--------KMSP 195 (237)
Q Consensus 134 tl~Ll~~Al~~-~~~~~f~LLSGsD~PL~s~~~I~~fL~~-~~~~FI~~~~~~--~~~R--y-~---~--------~~~p 195 (237)
++++|+.+++. ++|+||++|||+|+||+|+.|+.+.|+. ++.|||+..... ...| + . + .+.+
T Consensus 178 ~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~ 257 (439)
T KOG0799|consen 178 HLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWV 257 (439)
T ss_pred HHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccc
Confidence 99999999995 5799999999999999999999999998 779999974322 1111 1 0 0 0111
Q ss_pred CC-CCCccccccceeeccHHHHHHhhcCc
Q 026505 196 TI-PKGKWRKGSQWITLIRRHAEVIVDDE 223 (237)
Q Consensus 196 ~i-~~~~~~~GSqW~sLtR~~aeyIl~d~ 223 (237)
.+ .+.++++||.|++|+|++|+|++.++
T Consensus 258 ~lp~~~ki~~Gs~~~~LsR~fv~y~i~~~ 286 (439)
T KOG0799|consen 258 ILPTALKLFKGSAWVSLSRAFVEYLISGN 286 (439)
T ss_pred cCCCceEEEecceeEEEeHHHHHHHhcCc
Confidence 23 46889999999999999999999964
No 4
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=74.04 E-value=74 Score=29.36 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=51.3
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHhhh---cCCCeeEEEEeCCCCCcc--cc-----ccCCcceeceecCCcceeecCcc
Q 026505 59 PAKIAFLFLARRELPLDFLWGSFFEIA---DVENFSIFIHSAPGFVFD--EL-----TTRSKFFYGRQLSNSIQVAWGES 128 (237)
Q Consensus 59 ~~KiAfLIlah~~~~~~~l~~rl~~~l---d~~~~~iyIHvD~k~~~~--~~-----~~~~~vf~~r~i~~r~~V~WGg~ 128 (237)
.+++..+|-+|+..+. +.+.++++ +.+++.|.| +|..++-. +. ....+. ..+.+.+..+..|++
T Consensus 40 ~p~VSViiP~~nee~~---l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~~~~p~~-~i~~v~~~~~~G~~~- 113 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPE---LYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLRADFPDA-DIDLVIDARRHGPNR- 113 (373)
T ss_pred CCCeEEEEECCCCChh---HHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHHHhCCCC-ceEEEECCCCCCCCh-
Confidence 4679999999998766 55555554 446688877 55443211 10 011111 011222222223322
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHH
Q 026505 129 SMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYL 170 (237)
Q Consensus 129 SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s~~~I~~fL 170 (237)
-+.+..++++.| +.|+++++-.+|.| +.+.+.+-.
T Consensus 114 -K~~~l~~~~~~a----~ge~i~~~DaD~~~--~p~~L~~lv 148 (373)
T TIGR03472 114 -KVSNLINMLPHA----RHDILVIADSDISV--GPDYLRQVV 148 (373)
T ss_pred -HHHHHHHHHHhc----cCCEEEEECCCCCc--ChhHHHHHH
Confidence 234444444443 56777777777766 555555544
No 5
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=72.06 E-value=59 Score=27.34 Aligned_cols=101 Identities=13% Similarity=-0.038 Sum_probs=58.7
Q ss_pred CCCCCceEEEEEEeCCCCChHHHHHHHHhhh---cCCC--eeEEEEeCCCCCcc-c---cccCCcceeceecCCcceeec
Q 026505 55 HYDGPAKIAFLFLARRELPLDFLWGSFFEIA---DVEN--FSIFIHSAPGFVFD-E---LTTRSKFFYGRQLSNSIQVAW 125 (237)
Q Consensus 55 ~~~~~~KiAfLIlah~~~~~~~l~~rl~~~l---d~~~--~~iyIHvD~k~~~~-~---~~~~~~vf~~r~i~~r~~V~W 125 (237)
+...+++++.+|.+|+.... +.+.++.+ ..++ +.++|..|...+-. + .....++. .+... ..
T Consensus 24 ~~~~~~~isVvip~~n~~~~---l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~---~i~~~---~~ 94 (251)
T cd06439 24 DPAYLPTVTIIIPAYNEEAV---IEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVK---LLRFP---ER 94 (251)
T ss_pred CCCCCCEEEEEEecCCcHHH---HHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEE---EEEcC---CC
Confidence 45667899999999998755 55555554 1223 78999888765411 1 01111121 22111 11
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHhc
Q 026505 126 GESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLMA 172 (237)
Q Consensus 126 Gg~SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s~~~I~~fL~~ 172 (237)
+ +...|-..+++.| ..|+++++.+.|.|- .+.+.+.+..
T Consensus 95 ~--g~~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~~ 133 (251)
T cd06439 95 R--GKAAALNRALALA----TGEIVVFTDANALLD--PDALRLLVRH 133 (251)
T ss_pred C--ChHHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHHH
Confidence 2 3455655555554 238999999999995 5555555543
No 6
>PHA03054 IMV membrane protein; Provisional
Probab=63.54 E-value=13 Score=26.96 Aligned_cols=36 Identities=6% Similarity=0.201 Sum_probs=21.9
Q ss_pred CCCCCCCCCCceeeeehhHHHHHHHHHHHHHHHHHH
Q 026505 1 MTKKAAPKVGRHVLWFSWKLVTFFCIAFSLVALFRL 36 (237)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (237)
||.|-|+....-.-|.+|.+++++.++..+++++..
T Consensus 31 l~dk~~~~~~~~~~~~~~~~~ii~l~~v~~~~l~~f 66 (72)
T PHA03054 31 LSDEKTVTSTNNTGCWGWYWLIIIFFIVLILLLLIY 66 (72)
T ss_pred HcCCCCcccccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 455544444345667888888877765555555443
No 7
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=59.64 E-value=1.6e+02 Score=27.89 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=20.1
Q ss_pred CCCceEEEEEEeCCCCChHHHHHHHHhhh
Q 026505 57 DGPAKIAFLFLARRELPLDFLWGSFFEIA 85 (237)
Q Consensus 57 ~~~~KiAfLIlah~~~~~~~l~~rl~~~l 85 (237)
...|+++.+|-+|+..+. +.+.++++
T Consensus 46 ~~~P~vsVIIP~yNe~~~---l~~~l~sl 71 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDT---LFNCIESI 71 (439)
T ss_pred CCCCCEEEEEEeCCChHH---HHHHHHHH
Confidence 344789999999998766 77777766
No 8
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=57.47 E-value=1.6e+02 Score=27.25 Aligned_cols=115 Identities=11% Similarity=0.057 Sum_probs=61.1
Q ss_pred CCCceEEEEEEeCCCCChHHHHHHHHhhhcC---C-CeeEEEEeCCCCCc-----cccc-cCC---cceeceecC-Ccce
Q 026505 57 DGPAKIAFLFLARRELPLDFLWGSFFEIADV---E-NFSIFIHSAPGFVF-----DELT-TRS---KFFYGRQLS-NSIQ 122 (237)
Q Consensus 57 ~~~~KiAfLIlah~~~~~~~l~~rl~~~ld~---~-~~~iyIHvD~k~~~-----~~~~-~~~---~vf~~r~i~-~r~~ 122 (237)
+..+++..+|-+++..+. +.+.++++.. + ++.|.|=-|...+- ++.. +.. ++. .+. +..+
T Consensus 37 ~~~p~VSVIIpa~Ne~~~---L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~---vi~~~~~~ 110 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADV---IGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLT---VVSGQPLP 110 (384)
T ss_pred CCCCCEEEEEecCCcHhH---HHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEE---EecCCCCC
Confidence 455789999999999776 6777776632 2 45555544433321 1100 011 121 222 1223
Q ss_pred eecCcccHHHHHHHHHHHHhcC-CCCCEEEEecCCCccCCCh-HHHHHHHhcCCCCcee
Q 026505 123 VAWGESSMIAAERLLLEAALED-PANQRFVLLSDSCVPIYNF-SYVYKYLMASPRSFVD 179 (237)
Q Consensus 123 V~WGg~SlV~Atl~Ll~~Al~~-~~~~~f~LLSGsD~PL~s~-~~I~~fL~~~~~~FI~ 179 (237)
..|+|- ..|--..++.|-+. ++.|+++++-.++.+-.+. +.+.+.+++++...+.
T Consensus 111 ~g~~Gk--~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs 167 (384)
T TIGR03469 111 PGWSGK--LWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVS 167 (384)
T ss_pred CCCcch--HHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEE
Confidence 456543 45666667777543 3468888888877763222 3444444444444443
No 9
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=55.17 E-value=53 Score=27.75 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=51.6
Q ss_pred eEEEEEEeCCCCChHHHHHHHHhhhcCCCeeEEEEeCCCCCcc--ccccCCcceeceecCCcceeecCcccHHHHHHHHH
Q 026505 61 KIAFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFD--ELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLL 138 (237)
Q Consensus 61 KiAfLIlah~~~~~~~l~~rl~~~ld~~~~~iyIHvD~k~~~~--~~~~~~~vf~~r~i~~r~~V~WGg~SlV~Atl~Ll 138 (237)
++..+|.+++..+. +.+.++++......|+| +|..+.-. +.....++ +.+. ..|+|++ .|--.++
T Consensus 1 ~isvii~~~Ne~~~---l~~~l~sl~~~~~eiiv-vD~gStD~t~~i~~~~~~---~v~~----~~~~g~~--~~~n~~~ 67 (229)
T cd02511 1 TLSVVIITKNEERN---IERCLESVKWAVDEIIV-VDSGSTDRTVEIAKEYGA---KVYQ----RWWDGFG--AQRNFAL 67 (229)
T ss_pred CEEEEEEeCCcHHH---HHHHHHHHhcccCEEEE-EeCCCCccHHHHHHHcCC---EEEE----CCCCChH--HHHHHHH
Confidence 47888999998766 88888887532134555 66655311 11111111 1222 1577764 2222233
Q ss_pred HHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcC
Q 026505 139 EAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMAS 173 (237)
Q Consensus 139 ~~Al~~~~~~~f~LLSGsD~PL~s-~~~I~~fL~~~ 173 (237)
+. ...+|+..|-+++.+-.+ .+++.+.+.++
T Consensus 68 ~~----a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 68 EL----ATNDWVLSLDADERLTPELADEILALLATD 99 (229)
T ss_pred Hh----CCCCEEEEEeCCcCcCHHHHHHHHHHHhCC
Confidence 33 344688888888876433 34455555554
No 10
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=53.83 E-value=1.3e+02 Score=28.39 Aligned_cols=88 Identities=9% Similarity=-0.014 Sum_probs=48.6
Q ss_pred CCceEEEEEEeCCCCChHHHHHHHHhhh---cCCCeeEEEEeCCCCCcc-----ccc-cCCcceeceecCCcceeecCcc
Q 026505 58 GPAKIAFLFLARRELPLDFLWGSFFEIA---DVENFSIFIHSAPGFVFD-----ELT-TRSKFFYGRQLSNSIQVAWGES 128 (237)
Q Consensus 58 ~~~KiAfLIlah~~~~~~~l~~rl~~~l---d~~~~~iyIHvD~k~~~~-----~~~-~~~~vf~~r~i~~r~~V~WGg~ 128 (237)
+.++++.+|-+|+.... +.+.++++ +.++++|+|=-|...+-. +.. ...++. .+.. -..+|
T Consensus 73 ~~p~vsViIP~yNE~~~---i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~---vv~~---~~n~G- 142 (444)
T PRK14583 73 GHPLVSILVPCFNEGLN---ARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLR---VIHL---AHNQG- 142 (444)
T ss_pred CCCcEEEEEEeCCCHHH---HHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEE---EEEe---CCCCC-
Confidence 34789999999998755 45555543 346788877666544311 100 111111 1110 01223
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCCccC
Q 026505 129 SMIAAERLLLEAALEDPANQRFVLLSDSCVPI 160 (237)
Q Consensus 129 SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL 160 (237)
.- ..++.+++..+.|+++.+.++|.|=
T Consensus 143 -ka----~AlN~gl~~a~~d~iv~lDAD~~~~ 169 (444)
T PRK14583 143 -KA----IALRMGAAAARSEYLVCIDGDALLD 169 (444)
T ss_pred -HH----HHHHHHHHhCCCCEEEEECCCCCcC
Confidence 22 2334444445689999999999874
No 11
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=51.31 E-value=26 Score=25.51 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCCCCCCCCCceeeeehhHHHHHHHHHHHHHHHH
Q 026505 1 MTKKAAPKVGRHVLWFSWKLVTFFCIAFSLVALF 34 (237)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (237)
||.|-+...+...-|+.|.+++...++..+++++
T Consensus 31 ltdk~~~~~~~~~~~~~~~~~ii~ii~v~ii~~l 64 (72)
T PF12575_consen 31 LTDKKKLKNNKNNKNFNWIILIISIIFVLIIVLL 64 (72)
T ss_pred HcCCccccccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4566666668888899988777666544444433
No 12
>PHA02650 hypothetical protein; Provisional
Probab=47.98 E-value=34 Score=25.37 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=19.3
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHHHh
Q 026505 11 RHVLWFSWKLVTFFCIAFSLVALFRLH 37 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (237)
.-.-|++|.+++++.++.++++++...
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~fl 68 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSFF 68 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 446789999888887766666665543
No 13
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=44.85 E-value=14 Score=26.44 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026505 19 KLVTFFCIAFSLVALFRLHL 38 (237)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~ 38 (237)
.++++.+++|.|.+++.+|+
T Consensus 3 n~Si~VLlaLvLIg~fAVqS 22 (71)
T PF04202_consen 3 NLSIAVLLALVLIGSFAVQS 22 (71)
T ss_pred chhHHHHHHHHHHhhheeee
Confidence 36788889999999999986
No 14
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=44.68 E-value=1.3 Score=33.03 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=0.0
Q ss_pred CCCCCCCCCCceeeeehh
Q 026505 1 MTKKAAPKVGRHVLWFSW 18 (237)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (237)
|++|....+|+.+-||+|
T Consensus 53 m~rK~k~r~rkKrrwlwL 70 (81)
T PF14812_consen 53 MPRKGKKRPRKKRRWLWL 70 (81)
T ss_dssp ------------------
T ss_pred cccccccCccccchhHHH
Confidence 667744336666666655
No 15
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=41.60 E-value=1.9e+02 Score=23.43 Aligned_cols=38 Identities=13% Similarity=-0.009 Sum_probs=24.6
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHhhh---cCCCeeEEEEeCCCC
Q 026505 60 AKIAFLFLARRELPLDFLWGSFFEIA---DVENFSIFIHSAPGF 100 (237)
Q Consensus 60 ~KiAfLIlah~~~~~~~l~~rl~~~l---d~~~~~iyIHvD~k~ 100 (237)
|++..+|-+|+..+. +.++++++ ..+++.|.|=.|...
T Consensus 1 p~vsviip~~n~~~~---l~~~L~sl~~q~~~~~eiivVdd~s~ 41 (196)
T cd02520 1 PGVSILKPLCGVDPN---LYENLESFFQQDYPKYEILFCVQDED 41 (196)
T ss_pred CCeEEEEecCCCCcc---HHHHHHHHHhccCCCeEEEEEeCCCc
Confidence 357889999988755 55555554 235677777555544
No 16
>PRK11204 N-glycosyltransferase; Provisional
Probab=41.12 E-value=2.9e+02 Score=25.48 Aligned_cols=102 Identities=9% Similarity=0.027 Sum_probs=53.7
Q ss_pred CCCCceEEEEEEeCCCCChHHHHHHHHhhh---cCCCeeEEEEeCCCCCcc-c----cc-cCCcceeceecCCcceeecC
Q 026505 56 YDGPAKIAFLFLARRELPLDFLWGSFFEIA---DVENFSIFIHSAPGFVFD-E----LT-TRSKFFYGRQLSNSIQVAWG 126 (237)
Q Consensus 56 ~~~~~KiAfLIlah~~~~~~~l~~rl~~~l---d~~~~~iyIHvD~k~~~~-~----~~-~~~~vf~~r~i~~r~~V~WG 126 (237)
....++++.+|-+|+..+. +.+.++++ +.+++.|+|=-|...+-. + .. ...++. .+.. -..+
T Consensus 50 ~~~~p~vsViIp~yne~~~---i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~---~i~~---~~n~ 120 (420)
T PRK11204 50 LKEYPGVSILVPCYNEGEN---VEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLR---VIHL---AENQ 120 (420)
T ss_pred cCCCCCEEEEEecCCCHHH---HHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEE---EEEc---CCCC
Confidence 3445789999999999765 55555554 346778877555443211 1 00 111121 1210 0122
Q ss_pred cccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhc
Q 026505 127 ESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMA 172 (237)
Q Consensus 127 g~SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s-~~~I~~fL~~ 172 (237)
| ...| +..+++..++|+++.+-.++.|-.+ .+++.+.+++
T Consensus 121 G--ka~a----ln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 121 G--KANA----LNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred C--HHHH----HHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 3 2333 3334443467999999888877433 2344444543
No 17
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.93 E-value=68 Score=27.57 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=35.0
Q ss_pred ehhHHHHHHHHHHHHHHHHHHhhccCCCCcccccccCCC--------CCCCCceEEEEEEeCC
Q 026505 16 FSWKLVTFFCIAFSLVALFRLHLRYDISSSAVSRTRSRI--------HYDGPAKIAFLFLARR 70 (237)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~KiAfLIlah~ 70 (237)
.||.++|++++++|+.+.+.-+...+..+....|--..| .+++.++.-|.+++-+
T Consensus 4 ~Rw~~~ILll~a~~~~~w~~~~~~~~~~~v~~~~d~p~Y~~e~~~~~~~de~G~~~y~l~a~~ 66 (188)
T COG3117 4 RRWVYLILLLAALALSGWLLGLEQDEIEQVRPNPDEPAYTMEGLDTTVYDEQGKLKYRLTAQH 66 (188)
T ss_pred hhHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCceeecCcceeEECCCcceeEEeehhh
Confidence 478988999999999999888765443111111111113 3666678888888743
No 18
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=38.28 E-value=1.5e+02 Score=26.98 Aligned_cols=99 Identities=15% Similarity=0.061 Sum_probs=50.5
Q ss_pred CCCceEEEEEEeCCCCChHHHHHHHHhhh--------cCCCee-EEEEeC--CCC-Cccc---cccCCcceeceecCCcc
Q 026505 57 DGPAKIAFLFLARRELPLDFLWGSFFEIA--------DVENFS-IFIHSA--PGF-VFDE---LTTRSKFFYGRQLSNSI 121 (237)
Q Consensus 57 ~~~~KiAfLIlah~~~~~~~l~~rl~~~l--------d~~~~~-iyIHvD--~k~-~~~~---~~~~~~vf~~r~i~~r~ 121 (237)
.+...|||||....+.....+...|.+.+ ..+.+. -++++| .+. ..++ ....-+.+....=+.++
T Consensus 14 ~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 14 QNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred hCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceE
Confidence 45577999999988765555566666665 222222 355567 332 1111 11111111100013455
Q ss_pred eeecCcccHHH-HHHHHHHHHhcCCCCCEEEEecC
Q 026505 122 QVAWGESSMIA-AERLLLEAALEDPANQRFVLLSD 155 (237)
Q Consensus 122 ~V~WGg~SlV~-Atl~Ll~~Al~~~~~~~f~LLSG 155 (237)
=+.++.-.+-+ |.=.|++..=+-|++.+|++++.
T Consensus 94 vII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 94 LIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred EEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 56666555544 33344444333467899999885
No 19
>PHA02844 putative transmembrane protein; Provisional
Probab=37.60 E-value=61 Score=23.71 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=13.9
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHH
Q 026505 11 RHVLWFSWKLVTFFCIAFSLVALFR 35 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (237)
.-+-|.+|.+++++.++..+++++.
T Consensus 41 ~~~~~~~~~~~ii~i~~v~~~~~~~ 65 (75)
T PHA02844 41 NNVCSSSTKIWILTIIFVVFATFLT 65 (75)
T ss_pred cccCChhHHHHHHHHHHHHHHHHHH
Confidence 4455677777766654444444433
No 20
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=37.22 E-value=2.3e+02 Score=23.21 Aligned_cols=93 Identities=10% Similarity=0.066 Sum_probs=50.9
Q ss_pred eEEEEEEeCCCCChHHHHHHHHhhhcC-----CCeeEEEEeCCCCCc-----ccccc-CCcceeceecCCcceeecCccc
Q 026505 61 KIAFLFLARRELPLDFLWGSFFEIADV-----ENFSIFIHSAPGFVF-----DELTT-RSKFFYGRQLSNSIQVAWGESS 129 (237)
Q Consensus 61 KiAfLIlah~~~~~~~l~~rl~~~ld~-----~~~~iyIHvD~k~~~-----~~~~~-~~~vf~~r~i~~r~~V~WGg~S 129 (237)
|++.+|.++++.+. +.+.++.+.. .++.++|--|...+- +.... ...+. .+.+. .-|
T Consensus 1 ~~sIiip~~n~~~~---l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~---~i~~~---~~~--- 68 (249)
T cd02525 1 FVSIIIPVRNEEKY---IEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIR---LIDNP---KRI--- 68 (249)
T ss_pred CEEEEEEcCCchhh---HHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEE---EEeCC---CCC---
Confidence 46788999998766 6666666521 356677765554431 11111 11121 22211 111
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHh
Q 026505 130 MIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLM 171 (237)
Q Consensus 130 lV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s~~~I~~fL~ 171 (237)
.-.|--..++.| ..|+++++.+.|.| +...+.+.+.
T Consensus 69 ~~~a~N~g~~~a----~~d~v~~lD~D~~~--~~~~l~~~~~ 104 (249)
T cd02525 69 QSAGLNIGIRNS----RGDIIIRVDAHAVY--PKDYILELVE 104 (249)
T ss_pred chHHHHHHHHHh----CCCEEEEECCCccC--CHHHHHHHHH
Confidence 223444444443 57999999999986 5566666664
No 21
>PHA02819 hypothetical protein; Provisional
Probab=34.69 E-value=68 Score=23.24 Aligned_cols=26 Identities=12% Similarity=0.136 Sum_probs=16.2
Q ss_pred ceeeeehhHHHHHHHHHHHHHHHHHH
Q 026505 11 RHVLWFSWKLVTFFCIAFSLVALFRL 36 (237)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (237)
.-.-|.+|.+++++.++..+++++..
T Consensus 39 ~~~~~~~~~~~ii~l~~~~~~~~~~f 64 (71)
T PHA02819 39 KTKKSFLRYYLIIGLVTIVFVIIFII 64 (71)
T ss_pred cccCChhHHHHHHHHHHHHHHHHHHH
Confidence 33557888887777665555555443
No 22
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=34.20 E-value=33 Score=29.06 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=23.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhcCCCeeEEEEeCC
Q 026505 63 AFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAP 98 (237)
Q Consensus 63 AfLIlah~~~~~~~l~~rl~~~ld~~~~~iyIHvD~ 98 (237)
-.+||.+++... +..+++.+...+-.+|||+|-
T Consensus 21 ~~vfLl~g~I~~---l~~~v~~~~~~gK~vfVHiDl 53 (175)
T PF04309_consen 21 EVVFLLTGDIGN---LKDIVKRLKAAGKKVFVHIDL 53 (175)
T ss_dssp SEEEE-SEECCC---HHHHHHHHHHTT-EEEEECCG
T ss_pred CEEEEEcCcHHH---HHHHHHHHHHcCCEEEEEehh
Confidence 345666777767 788888887778889999994
No 23
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.38 E-value=30 Score=27.39 Aligned_cols=11 Identities=9% Similarity=0.528 Sum_probs=4.8
Q ss_pred eehhHHHHHHH
Q 026505 15 WFSWKLVTFFC 25 (237)
Q Consensus 15 ~~~~~~~~~~~ 25 (237)
|+-|.+++++.
T Consensus 2 W~l~~iii~~i 12 (130)
T PF12273_consen 2 WVLFAIIIVAI 12 (130)
T ss_pred eeeHHHHHHHH
Confidence 44444444433
No 24
>PHA02692 hypothetical protein; Provisional
Probab=32.43 E-value=73 Score=23.05 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=12.0
Q ss_pred CCCCCCCCCCceeeeehhHHHHHH
Q 026505 1 MTKKAAPKVGRHVLWFSWKLVTFF 24 (237)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (237)
||.| |+. +..-+.+|..++++
T Consensus 31 LtDk-~~~--~~~~~~~~~~~ii~ 51 (70)
T PHA02692 31 MTEK-PAC--DRSKGVPWTTVFLI 51 (70)
T ss_pred HcCC-Ccc--cccCCcchHHHHHH
Confidence 4556 222 44556777776666
No 25
>PHA02975 hypothetical protein; Provisional
Probab=31.20 E-value=90 Score=22.50 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=12.4
Q ss_pred eeehhHHHHHHHHHHHHHHHH
Q 026505 14 LWFSWKLVTFFCIAFSLVALF 34 (237)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~ 34 (237)
.+.+|.+++++.++..+++++
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~ 60 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVF 60 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHH
Confidence 567777777666544444443
No 26
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=30.81 E-value=2.5e+02 Score=24.89 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=53.9
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHhhhcCCCe--eEEEEeCCCCCccc--cccCCcceeceecCCcceeecCcccHHHHH
Q 026505 59 PAKIAFLFLARRELPLDFLWGSFFEIADVENF--SIFIHSAPGFVFDE--LTTRSKFFYGRQLSNSIQVAWGESSMIAAE 134 (237)
Q Consensus 59 ~~KiAfLIlah~~~~~~~l~~rl~~~ld~~~~--~iyIHvD~k~~~~~--~~~~~~vf~~r~i~~r~~V~WGg~SlV~At 134 (237)
+++++.+|..|+..+. +...++.+..... ...|=+|..+.-.. .........+++++...+.-|++---
T Consensus 2 ~~~i~~iiv~yn~~~~---l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG~agg~n---- 74 (305)
T COG1216 2 MPKISIIIVTYNRGED---LVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGENLGFAGGFN---- 74 (305)
T ss_pred CcceEEEEEecCCHHH---HHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCCccchhhhh----
Confidence 4789999999999765 5555554422111 12224576653211 11110011122455555555544322
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCccC--CChHHHHHHHhcCCCC
Q 026505 135 RLLLEAALEDPANQRFVLLSDSCVPI--YNFSYVYKYLMASPRS 176 (237)
Q Consensus 135 l~Ll~~Al~~~~~~~f~LLSGsD~PL--~s~~~I~~fL~~~~~~ 176 (237)
.++++|++++.. ++++--.|.++ ...+++.+.++.++..
T Consensus 75 -~g~~~a~~~~~~--~~l~LN~D~~~~~~~l~~ll~~~~~~~~~ 115 (305)
T COG1216 75 -RGIKYALAKGDD--YVLLLNPDTVVEPDLLEELLKAAEEDPAA 115 (305)
T ss_pred -HHHHHHhcCCCc--EEEEEcCCeeeChhHHHHHHHHHHhCCCC
Confidence 677888885433 55555566443 2334444444444433
No 27
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=30.44 E-value=57 Score=27.81 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=51.9
Q ss_pred EEEEeCCCCChHHHHHHHHhhhcCCCeeEEEEeCCCCCccccccCCcceeceecCCcceeecCcccHHHHHHHHHHHHhc
Q 026505 64 FLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLLEAALE 143 (237)
Q Consensus 64 fLIlah~~~~~~~l~~rl~~~ld~~~~~iyIHvD~k~~~~~~~~~~~vf~~r~i~~r~~V~WGg~SlV~Atl~Ll~~Al~ 143 (237)
|+++-.++.-+ ++..++.+.+..-.+|||+|-=...... ...- +|+.+-+. - .+++..--+.+..|-+
T Consensus 26 ~vflL~~~i~~---ik~ivk~lK~~gK~vfiHvDLv~Gl~~~-e~~i----~fi~~~~~--p--dGIISTk~~~i~~Akk 93 (181)
T COG1954 26 YVFLLTGHILN---IKEIVKKLKNRGKTVFIHVDLVEGLSND-EVAI----EFIKEVIK--P--DGIISTKSNVIKKAKK 93 (181)
T ss_pred EEEEEechhhh---HHHHHHHHHhCCcEEEEEeHHhcccCCc-hHHH----HHHHHhcc--C--CeeEEccHHHHHHHHH
Confidence 44455555556 7888888877788899999932211100 0000 12211110 0 1222233344455555
Q ss_pred C--CCCCEEEEecCCCccCCChHHHHHHHhcCCCCceecc
Q 026505 144 D--PANQRFVLLSDSCVPIYNFSYVYKYLMASPRSFVDSF 181 (237)
Q Consensus 144 ~--~~~~~f~LLSGsD~PL~s~~~I~~fL~~~~~~FI~~~ 181 (237)
. ...+++.++--+- .+...+.....+-+|||..
T Consensus 94 ~~~~aIqR~FilDS~A-----l~~~~~~i~~~~pD~iEvL 128 (181)
T COG1954 94 LGILAIQRLFILDSIA-----LEKGIKQIEKSEPDFIEVL 128 (181)
T ss_pred cCCceeeeeeeecHHH-----HHHHHHHHHHcCCCEEEEc
Confidence 3 3457777765443 3455566666667888853
No 28
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
Probab=30.44 E-value=3.3e+02 Score=24.19 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=56.1
Q ss_pred CCCceEEEEEEeCCCCChHHHHHHHHhhh--cCCCeeEEEEeCCCCCccccccCCcceeceecCCcceeecCcccHHHHH
Q 026505 57 DGPAKIAFLFLARRELPLDFLWGSFFEIA--DVENFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIAAE 134 (237)
Q Consensus 57 ~~~~KiAfLIlah~~~~~~~l~~rl~~~l--d~~~~~iyIHvD~k~~~~~~~~~~~vf~~r~i~~r~~V~WGg~SlV~At 134 (237)
.+.+|++|+|=..+....+.-....++.| ..-++-+||-..+.. .. .+ +.++ --|.||..|+-..
T Consensus 69 ~~e~kl~fVIRirG~~~v~p~v~k~L~lLRL~~in~~Vfvk~~~~~-~~-ML--------~~Ve--pYVt~G~p~l~tv- 135 (235)
T TIGR01310 69 PAEHKLLFVIRIKGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKAT-LQ-ML--------RIVE--PYVAYGYPNLKSV- 135 (235)
T ss_pred CCCCeEEEEEEeCCCCCCCHHHHHHHHHhCCCccceEEEEECCHHH-HH-HH--------HhcC--CeEEEecCCHHHH-
Confidence 34579999999876532222255666555 234444555444321 00 00 0122 1379999986433
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHhcCC
Q 026505 135 RLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLMASP 174 (237)
Q Consensus 135 l~Ll~~Al~~~~~~~f~LLSGsD~PL~s~~~I~~fL~~~~ 174 (237)
++++.... +.-+.|+-+||-++.-+.+.|...+
T Consensus 136 ----r~Li~KRG---~~k~~~~~v~Ltdn~iiE~~lg~~g 168 (235)
T TIGR01310 136 ----RELIYKRG---FAKINGQRVPLTDNTIIEQHLGKYG 168 (235)
T ss_pred ----HHHHHHhC---ceeeCCCeeeCChhHHHHHhhccCC
Confidence 33333222 3557888999999999998886544
No 29
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=28.74 E-value=2.9e+02 Score=22.64 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=51.5
Q ss_pred EEEeCCCC-ChHHHHHHHHhhhcCCCeeEEEEeCCCCCccc--cc--cCCcceeceecCCcceeecCcccHHHHHHHHHH
Q 026505 65 LFLARREL-PLDFLWGSFFEIADVENFSIFIHSAPGFVFDE--LT--TRSKFFYGRQLSNSIQVAWGESSMIAAERLLLE 139 (237)
Q Consensus 65 LIlah~~~-~~~~l~~rl~~~ld~~~~~iyIHvD~k~~~~~--~~--~~~~vf~~r~i~~r~~V~WGg~SlV~Atl~Ll~ 139 (237)
+|.+++.. +. +.+.++++......|.| +|..++-.. .. ...++. .+. .+-.-| ...|--.+++
T Consensus 2 vI~~yn~~~~~---l~~~l~sl~~q~~~iiv-vDn~s~~~~~~~~~~~~~~i~---~i~--~~~n~G---~~~a~N~g~~ 69 (237)
T cd02526 2 VVVTYNPDLSK---LKELLAALAEQVDKVVV-VDNSSGNDIELRLRLNSEKIE---LIH--LGENLG---IAKALNIGIK 69 (237)
T ss_pred EEEEecCCHHH---HHHHHHHHhccCCEEEE-EeCCCCccHHHHhhccCCcEE---EEE--CCCcee---hHHhhhHHHH
Confidence 46677776 66 88888888655444444 777654211 11 112221 111 111223 4445555666
Q ss_pred HHhcCCCCCEEEEecCCCccCCChHHHHHHH
Q 026505 140 AALEDPANQRFVLLSDSCVPIYNFSYVYKYL 170 (237)
Q Consensus 140 ~Al~~~~~~~f~LLSGsD~PL~s~~~I~~fL 170 (237)
.|.. .+++|++++.+.+.+ +.+.+...+
T Consensus 70 ~a~~-~~~d~v~~lD~D~~~--~~~~l~~l~ 97 (237)
T cd02526 70 AALE-NGADYVLLFDQDSVP--PPDMVEKLL 97 (237)
T ss_pred HHHh-CCCCEEEEECCCCCc--CHhHHHHHH
Confidence 6644 268999999998887 466666663
No 30
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=27.87 E-value=1.1e+02 Score=22.22 Aligned_cols=35 Identities=6% Similarity=0.037 Sum_probs=21.7
Q ss_pred cCcccHHHHHHHHHHHHhcCCCCCEEEEecCCCcc
Q 026505 125 WGESSMIAAERLLLEAALEDPANQRFVLLSDSCVP 159 (237)
Q Consensus 125 WGg~SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~P 159 (237)
++|....+..+.+.++.-.+.+.+..++.+|.++|
T Consensus 3 i~G~dRyeTs~~va~~~~~~~~~~~v~ia~g~~~~ 37 (92)
T PF04122_consen 3 ISGADRYETSAKVAKKFYPDNKSDKVYIASGDNFA 37 (92)
T ss_pred CCCCCHHHHHHHHHHHhcccCCCCEEEEEeCcchh
Confidence 45666666666666664443456677777776643
No 31
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=27.80 E-value=1.5e+02 Score=27.65 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=52.3
Q ss_pred EEEEEEeCCCCChHHHHHHHHhhhc-----CCCeeEEEEeCCCCCc-cccc-cC-CcceeceecCCcceeecC-------
Q 026505 62 IAFLFLARRELPLDFLWGSFFEIAD-----VENFSIFIHSAPGFVF-DELT-TR-SKFFYGRQLSNSIQVAWG------- 126 (237)
Q Consensus 62 iAfLIlah~~~~~~~l~~rl~~~ld-----~~~~~iyIHvD~k~~~-~~~~-~~-~~vf~~r~i~~r~~V~WG------- 126 (237)
++.+|+|.+.++. +++.+++|- .+.+.++|=.|....- .+.. .. ..+-...+ .+.-....|
T Consensus 2 ~PVlv~ayNRp~~---l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~-~~~~~~~~~~~~~~~~ 77 (334)
T cd02514 2 IPVLVIACNRPDY---LRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQH-PPISIKNVNPPHKFQG 77 (334)
T ss_pred cCEEEEecCCHHH---HHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEEc-ccccccccCcccccch
Confidence 4678999999976 555555552 2368899998875421 1111 11 01110001 001111122
Q ss_pred cccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCCh
Q 026505 127 ESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNF 163 (237)
Q Consensus 127 g~SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s~ 163 (237)
..++.+.-...+..+.+..++++++.|=++|.|--+|
T Consensus 78 y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdF 114 (334)
T cd02514 78 YYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDF 114 (334)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhH
Confidence 1222332233556666545689999999999987663
No 32
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.76 E-value=69 Score=25.27 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 026505 17 SWKLVTFFCIAFSLVALFR 35 (237)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~ 35 (237)
||-++++|.++++|+.++.
T Consensus 1 RW~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLF 19 (130)
T ss_pred CeeeHHHHHHHHHHHHHHH
Confidence 6888888888887765544
No 33
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=27.46 E-value=22 Score=26.09 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=21.3
Q ss_pred CcceeecCcccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHhc
Q 026505 119 NSIQVAWGESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLMA 172 (237)
Q Consensus 119 ~r~~V~WGg~SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s~~~I~~fL~~ 172 (237)
....|.-||.++-..++ + =+|+++|+|+++.+++.+-+.+
T Consensus 32 ~~t~c~~g~~~~ta~El-----~---------kll~~~DFP~k~a~~lad~i~~ 71 (75)
T PF07747_consen 32 PSTTCEAGDVEMTAGEL-----G---------KLLTDSDFPYKSAEDLADDIVE 71 (75)
T ss_dssp S-----BTTB---TTTT-----G---------GGS-GGGSB-SHHHHHHHHHHH
T ss_pred CCCccccCCEeeeHHHH-----H---------hhCCccCCCCCCHHHHHHHHHH
Confidence 36778888887632211 1 2578999999999999887754
No 34
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.44 E-value=2.9e+02 Score=22.32 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=18.5
Q ss_pred CCCCEEEEecCCCccCCChHHHHHHHh
Q 026505 145 PANQRFVLLSDSCVPIYNFSYVYKYLM 171 (237)
Q Consensus 145 ~~~~~f~LLSGsD~PL~s~~~I~~fL~ 171 (237)
...++++++.+.|.| ..+.+.+.+.
T Consensus 81 ~~~d~i~~~D~D~~~--~~~~l~~l~~ 105 (229)
T cd04192 81 AKGDWIVTTDADCVV--PSNWLLTFVA 105 (229)
T ss_pred hcCCEEEEECCCccc--CHHHHHHHHH
Confidence 356899999999977 4566666664
No 35
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=25.58 E-value=5.2e+02 Score=23.60 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=54.8
Q ss_pred CceEEEEEEeCCCCC-hHHHHHHHHhhh---cCCCeeEEEEeCCCCCc-ccccc-CCcceeceecCCcceeecCcccHHH
Q 026505 59 PAKIAFLFLARRELP-LDFLWGSFFEIA---DVENFSIFIHSAPGFVF-DELTT-RSKFFYGRQLSNSIQVAWGESSMIA 132 (237)
Q Consensus 59 ~~KiAfLIlah~~~~-~~~l~~rl~~~l---d~~~~~iyIHvD~k~~~-~~~~~-~~~vf~~r~i~~r~~V~WGg~SlV~ 132 (237)
.+++..+|=+|+..+ . +++.++++ |.+++++++=.|...+- .+... ...-+ .+++.+... -.--.
T Consensus 53 ~p~vsviiP~ynE~~~~---~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~ 123 (439)
T COG1215 53 LPKVSVIIPAYNEEPEV---LEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEY-----GPNFRVIYP-EKKNG 123 (439)
T ss_pred CCceEEEEecCCCchhh---HHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhc-----CcceEEEec-cccCc
Confidence 588999999999976 5 66666665 45667888888855431 11000 00000 012222211 11222
Q ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccCCCh-HHHHHHHhcC
Q 026505 133 AERLLLEAALEDPANQRFVLLSDSCVPIYNF-SYVYKYLMAS 173 (237)
Q Consensus 133 Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s~-~~I~~fL~~~ 173 (237)
+-...+..+++....|+++++-++..|=.+. .++...|+.+
T Consensus 124 gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~ 165 (439)
T COG1215 124 GKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDP 165 (439)
T ss_pred cchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCC
Confidence 3344555555554567776666666554332 3334444433
No 36
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.53 E-value=68 Score=24.39 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHh
Q 026505 23 FFCIAFSLVALFRLH 37 (237)
Q Consensus 23 ~~~~~~~~~~~~~~~ 37 (237)
+|+++|+|+++|.+.
T Consensus 6 ~llL~l~LA~lLlis 20 (95)
T PF07172_consen 6 FLLLGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666676766664
No 37
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=25.10 E-value=3.5e+02 Score=21.44 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=48.8
Q ss_pred ceEEEEEEeCCCC-ChHHHHHHHHhhhc---CCCeeEEEEeCCCCC--cccc-----ccCCcceeceecCCcceeecCcc
Q 026505 60 AKIAFLFLARREL-PLDFLWGSFFEIAD---VENFSIFIHSAPGFV--FDEL-----TTRSKFFYGRQLSNSIQVAWGES 128 (237)
Q Consensus 60 ~KiAfLIlah~~~-~~~~l~~rl~~~ld---~~~~~iyIHvD~k~~--~~~~-----~~~~~vf~~r~i~~r~~V~WGg~ 128 (237)
|++.++|.+++.. +. +.+.++++- .+.+.|.|--|...+ .+.. .+...+. .+... +..
T Consensus 1 p~vsiii~~~n~~~~~---l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~---~~~~~-----~~~ 69 (202)
T cd04184 1 PLISIVMPVYNTPEKY---LREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIK---VVFRE-----ENG 69 (202)
T ss_pred CeEEEEEecccCcHHH---HHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEE---EEEcc-----cCC
Confidence 4688999999987 66 666666652 245667665554432 1110 0111111 11111 122
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHH
Q 026505 129 SMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYL 170 (237)
Q Consensus 129 SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s~~~I~~fL 170 (237)
....|--..++.| ..+|+.++...|.| +.+.+...+
T Consensus 70 g~~~a~n~g~~~a----~~d~i~~ld~D~~~--~~~~l~~~~ 105 (202)
T cd04184 70 GISAATNSALELA----TGEFVALLDHDDEL--APHALYEVV 105 (202)
T ss_pred CHHHHHHHHHHhh----cCCEEEEECCCCcC--ChHHHHHHH
Confidence 3344544455544 45889888888876 344444433
No 38
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=25.02 E-value=1.6e+02 Score=29.00 Aligned_cols=103 Identities=18% Similarity=0.111 Sum_probs=58.2
Q ss_pred CCCCCceEEEEEEeCCCCCh-HHHHHHHHhhhcCCCeeEEEEeCCCCCc-----ccc-ccCCcceeceecCCcceeecCc
Q 026505 55 HYDGPAKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPGFVF-----DEL-TTRSKFFYGRQLSNSIQVAWGE 127 (237)
Q Consensus 55 ~~~~~~KiAfLIlah~~~~~-~~l~~rl~~~ld~~~~~iyIHvD~k~~~-----~~~-~~~~~vf~~r~i~~r~~V~WGg 127 (237)
+....++++.+|-||+.... ++.++.++..+|.+++.|+|=.|...+- ++. ....++.. .+. -.=|.
T Consensus 61 ~~~~~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~--vv~----~~~gp 134 (504)
T PRK14716 61 RSVPEKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHL--VIV----PHDGP 134 (504)
T ss_pred ccCCCCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEE--EEe----CCCCC
Confidence 34446789999999999766 3344444445566889999977655321 111 11223221 111 11244
Q ss_pred ccHHHHHHHHHHHHhc----C-CCCCEEEEecCCCccCCCh
Q 026505 128 SSMIAAERLLLEAALE----D-PANQRFVLLSDSCVPIYNF 163 (237)
Q Consensus 128 ~SlV~Atl~Ll~~Al~----~-~~~~~f~LLSGsD~PL~s~ 163 (237)
.+-..|.-..++.+.+ . .++|+++++-..|+|=...
T Consensus 135 ~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~ 175 (504)
T PRK14716 135 TSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLE 175 (504)
T ss_pred CCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccH
Confidence 4556665555655432 1 2568888888877765433
No 39
>PF06718 DUF1203: Protein of unknown function (DUF1203); InterPro: IPR009593 This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=24.59 E-value=3.2e+02 Score=21.59 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=49.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhhhcCCCeeEEEEeCCCCCccc------cccCCcceeceecCCcceeecCcccHHHHHHH
Q 026505 63 AFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDE------LTTRSKFFYGRQLSNSIQVAWGESSMIAAERL 136 (237)
Q Consensus 63 AfLIlah~~~~~~~l~~rl~~~ld~~~~~iyIHvD~k~~~~~------~~~~~~vf~~r~i~~r~~V~WGg~SlV~Atl~ 136 (237)
..|++.|..++. ..-+.+..-||||-+.-..... ....+.....|--...-...+|........-.
T Consensus 16 ~~lLlsy~p~~~--------~~PY~e~gpIFvha~~c~~~~~~~~~P~~l~~~r~~~lR~Y~a~~~iv~g~v~~g~~~~~ 87 (117)
T PF06718_consen 16 ELLLLSYRPFPA--------PSPYRETGPIFVHAEACEAYDGVDELPPVLYRGRLLSLRAYDADGRIVTGRVVEGADIEA 87 (117)
T ss_pred eEEEEecCCCCC--------CCCCCCCCCEEEecCcccCCCCCCCCChhhccCCCeEEEeEcCCCCEEeeeEEcchhHHH
Confidence 466788887643 1224577789999997542211 11111111111111222233777777766777
Q ss_pred HHHHHhcCCCCCEEEEecC
Q 026505 137 LLEAALEDPANQRFVLLSD 155 (237)
Q Consensus 137 Ll~~Al~~~~~~~f~LLSG 155 (237)
.+++++++++.+|+|.=|.
T Consensus 88 ~l~~~fa~p~VayVHvr~a 106 (117)
T PF06718_consen 88 RLAELFADPEVAYVHVRNA 106 (117)
T ss_pred HHHHHhcCCCceEEEeecc
Confidence 7789999999999987653
No 40
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=23.34 E-value=3.2e+02 Score=20.30 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=54.8
Q ss_pred EEEEeCCCCChHHHHHHHHhhh---cCCCeeEEEEeCCCCCc-c----cccc-CCcceeceecCCcceeecCcccHHHHH
Q 026505 64 FLFLARRELPLDFLWGSFFEIA---DVENFSIFIHSAPGFVF-D----ELTT-RSKFFYGRQLSNSIQVAWGESSMIAAE 134 (237)
Q Consensus 64 fLIlah~~~~~~~l~~rl~~~l---d~~~~~iyIHvD~k~~~-~----~~~~-~~~vf~~r~i~~r~~V~WGg~SlV~At 134 (237)
.+|.+++..+. +.++++++ ......|+|--|...+- . +... ..++. .+.. ..+ ...-.|-
T Consensus 2 vvip~~n~~~~---l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~---~i~~----~~n-~g~~~~~ 70 (169)
T PF00535_consen 2 VVIPTYNEAEY---LERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIR---YIRN----PEN-LGFSAAR 70 (169)
T ss_dssp EEEEESS-TTT---HHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEE---EEEH----CCC-SHHHHHH
T ss_pred EEEEeeCCHHH---HHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccc---cccc----ccc-ccccccc
Confidence 36777888766 55555544 34678888866655321 1 1111 12222 1211 111 2556677
Q ss_pred HHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcCCCCc
Q 026505 135 RLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMASPRSF 177 (237)
Q Consensus 135 l~Ll~~Al~~~~~~~f~LLSGsD~PL~s-~~~I~~fL~~~~~~F 177 (237)
-.+++.|.. +|+.++.+.|++..+ .+++.+++++++...
T Consensus 71 n~~~~~a~~----~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~ 110 (169)
T PF00535_consen 71 NRGIKHAKG----EYILFLDDDDIISPDWLEELVEALEKNPPDV 110 (169)
T ss_dssp HHHHHH--S----SEEEEEETTEEE-TTHHHHHHHHHHHCTTEE
T ss_pred cccccccce----eEEEEeCCCceEcHHHHHHHHHHHHhCCCcE
Confidence 777777644 499999999998887 677777777765443
No 41
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.55 E-value=65 Score=23.76 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=28.6
Q ss_pred cceeecCcccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHhc
Q 026505 120 SIQVAWGESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLMA 172 (237)
Q Consensus 120 r~~V~WGg~SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s~~~I~~fL~~ 172 (237)
...|.=||.+.-.||+. -|+|..|+|.++.+++.+-+.+
T Consensus 38 dttc~~G~~e~tA~E~~--------------kLlT~~DFPfk~a~~vad~iv~ 76 (80)
T COG4746 38 DTTCESGGVEVTAAEAG--------------KLLTDADFPFKSAEQVADTIVN 76 (80)
T ss_pred CCCccCCCeeeeHHHHH--------------hhccccCCCCCCHHHHHHHHHH
Confidence 45677788876655432 2688999999999999877643
No 42
>PRK05529 cell division protein FtsQ; Provisional
Probab=20.79 E-value=61 Score=28.77 Aligned_cols=33 Identities=3% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCCCCCCCceeeeehhHHHHHHHHHHHHHHHH
Q 026505 2 TKKAAPKVGRHVLWFSWKLVTFFCIAFSLVALF 34 (237)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (237)
+++.+...||+++|+-+.+.++|.+++++...+
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~ 56 (255)
T PRK05529 24 VRRFTTRIRRRFILLACAVGAVLTLLLFVMLSA 56 (255)
T ss_pred hhchhhhccchhhhHHHHHHHHHHHHHHHHHhe
No 43
>PRK14762 membrane protein; Provisional
Probab=20.58 E-value=1.3e+02 Score=17.53 Aligned_cols=15 Identities=20% Similarity=0.631 Sum_probs=11.6
Q ss_pred ehhHHHHHHHHHHHH
Q 026505 16 FSWKLVTFFCIAFSL 30 (237)
Q Consensus 16 ~~~~~~~~~~~~~~~ 30 (237)
+.|.+.+.|.+.|..
T Consensus 4 ~lw~i~iifligllv 18 (27)
T PRK14762 4 ILWAVLIIFLIGLLV 18 (27)
T ss_pred HHHHHHHHHHHHHHH
Confidence 579999988876654
Done!