Query 026505
Match_columns 237
No_of_seqs 140 out of 575
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 2.1E-38 7.2E-43 294.7 12.2 175 57-234 81-280 (391)
2 1qg8_A Protein (spore coat pol 67.5 46 0.0016 26.6 10.1 109 60-178 1-122 (255)
3 2fy7_A Beta-1,4-galactosyltran 50.4 51 0.0017 28.3 7.7 77 59-163 64-146 (287)
4 4fix_A UDP-galactofuranosyl tr 47.4 23 0.0008 34.2 5.5 113 56-173 176-296 (657)
5 3ckj_A Putative uncharacterize 34.1 2.1E+02 0.0073 24.2 10.3 110 57-178 45-166 (329)
6 2z86_A Chondroitin synthase; G 29.1 2.9E+02 0.01 25.4 9.8 102 59-174 92-203 (625)
7 2z86_A Chondroitin synthase; G 22.3 4.6E+02 0.016 24.1 9.8 92 59-168 374-474 (625)
8 3bcv_A Putative glycosyltransf 21.9 2.8E+02 0.0095 21.4 9.8 102 59-176 4-115 (240)
9 1iio_A Conserved hypothetical 20.4 25 0.00084 25.3 0.3 39 120-172 42-80 (84)
10 4hg6_A Cellulose synthase subu 17.1 3.6E+02 0.012 26.3 8.0 41 57-99 137-182 (802)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=2.1e-38 Score=294.71 Aligned_cols=175 Identities=11% Similarity=0.095 Sum_probs=139.0
Q ss_pred CCCceEEEEEEeCCCCChHHHHHHHHhhhcCCCeeEEEEeCCCCCcc--ccc-cCCcceece-ecCCcceeecCcccHHH
Q 026505 57 DGPAKIAFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFD--ELT-TRSKFFYGR-QLSNSIQVAWGESSMIA 132 (237)
Q Consensus 57 ~~~~KiAfLIlah~~~~~~~l~~rl~~~ld~~~~~iyIHvD~k~~~~--~~~-~~~~vf~~r-~i~~r~~V~WGg~SlV~ 132 (237)
++++||||||++|+++++ |+||+++++++++.||||+|+|++.. +.. .....|.|. ++++|+.|.|||+|||+
T Consensus 81 e~~~kiAflil~h~d~~~---l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~ 157 (391)
T 2gak_A 81 EVGFPIAYSIVVHHKIEM---LDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVK 157 (391)
T ss_dssp HHTSCEEEEEEECSCHHH---HHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHHH
T ss_pred ccCCCEEEEEEecCCHHH---HHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHHH
Confidence 456899999999999888 99999999999999999999998632 111 111223333 34689999999999999
Q ss_pred HHHHHHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCCCceeccccCC--CCccC--CC-----C-----C-C
Q 026505 133 AERLLLEAALED-PANQRFVLLSDSCVPIYNFSYVYKYLMA-SPRSFVDSFLDRK--ESRYN--PK-----M-----S-P 195 (237)
Q Consensus 133 Atl~Ll~~Al~~-~~~~~f~LLSGsD~PL~s~~~I~~fL~~-~~~~FI~~~~~~~--~~Ry~--~~-----~-----~-p 195 (237)
||++||+.||++ .+|+|||||||+|+||+|+++|++||+. +++|||+++.+++ .+|+. .. + . .
T Consensus 158 A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~~~R~~~~~~~~~~~l~~~~~~k~ 237 (391)
T 2gak_A 158 ADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTGIVKA 237 (391)
T ss_dssp HHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGGSHHHHEEEEEETTEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCcccccceEeeeeccccceeeeccccc
Confidence 999999999985 5999999999999999999999999998 5799999876542 34422 10 0 0 1
Q ss_pred CCC-CCccccccceeeccHHHHHHhhcCc---ccHHHhccccc
Q 026505 196 TIP-KGKWRKGSQWITLIRRHAEVIVDDE---IIFPVFKKCCK 234 (237)
Q Consensus 196 ~i~-~~~~~~GSqW~sLtR~~aeyIl~d~---~i~~~F~~~c~ 234 (237)
.+| +.++++|||||+|||++|+||++|. ++.+.|+..|.
T Consensus 238 ~~P~~~~~~~GSqW~~LtR~~v~~vl~d~~~~~~~~~~k~t~~ 280 (391)
T 2gak_A 238 PPPLKTPLFSGSAYFVVTREYVGYVLENENIQKLMEWAQDTYS 280 (391)
T ss_dssp CCSCSSCCEECCSCCEEEHHHHHHHHHCHHHHHHHHHHTTSSS
T ss_pred CCccccceecccceeEecHHHHHHHHhCCcHHHHHHHHcCCcC
Confidence 123 5789999999999999999999973 66666776664
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=67.49 E-value=46 Score=26.59 Aligned_cols=109 Identities=9% Similarity=0.089 Sum_probs=59.0
Q ss_pred ceEEEEEEeCCCCChHHHHHHHHhhhc---CCCeeEEEEeCCCCCc-----cccccCCcceeceecCCcc---eeecCcc
Q 026505 60 AKIAFLFLARRELPLDFLWGSFFEIAD---VENFSIFIHSAPGFVF-----DELTTRSKFFYGRQLSNSI---QVAWGES 128 (237)
Q Consensus 60 ~KiAfLIlah~~~~~~~l~~rl~~~ld---~~~~~iyIHvD~k~~~-----~~~~~~~~vf~~r~i~~r~---~V~WGg~ 128 (237)
|++..+|.+++..+. +.+.++++- .+++.|.|=-|...+- ++.....++. .+.... ...+...
T Consensus 1 p~vSViIp~yn~~~~---l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~---~i~~~~~~~~~~~~n~ 74 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDY---VAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVR---FYQSDISGVKERTEKT 74 (255)
T ss_dssp CCEEEEEEESSCTTT---HHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEE---EEECCCCSHHHHHSSC
T ss_pred CeEEEEEEcCCCHHH---HHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEE---EEeccccccccccccc
Confidence 578999999999876 666666652 3566776655544321 1111112221 121110 0001234
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcC-CCCce
Q 026505 129 SMIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMAS-PRSFV 178 (237)
Q Consensus 129 SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s-~~~I~~fL~~~-~~~FI 178 (237)
+...|--.+++.| ..+|+.++.+.|++-.+ .+.+.+.+.++ +...+
T Consensus 75 G~~~a~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v 122 (255)
T 1qg8_A 75 RYAALINQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred CHHHHHHHHHHHc----CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEE
Confidence 5555655566655 45899999999987533 34455556554 34444
No 3
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=50.43 E-value=51 Score=28.26 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=47.2
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHhhhc------CCCeeEEEEeCCCCCccccccCCcceeceecCCcceeecCcccHHH
Q 026505 59 PAKIAFLFLARRELPLDFLWGSFFEIAD------VENFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAWGESSMIA 132 (237)
Q Consensus 59 ~~KiAfLIlah~~~~~~~l~~rl~~~ld------~~~~~iyIHvD~k~~~~~~~~~~~vf~~r~i~~r~~V~WGg~SlV~ 132 (237)
.++++.+|-+++..+. +.++++++. ..++.|+|=-| ..+ +++....
T Consensus 64 ~~~VSIIIP~yN~~~~---L~~~L~sl~~~l~q~~~~~EIiVVdd-s~d------------------------~~f~~a~ 115 (287)
T 2fy7_A 64 PHKVAIIIPFRNRQEH---LKYWLYYLHPVLQRQQLDYGIYVINQ-AGD------------------------TIFNRAK 115 (287)
T ss_dssp SCEEEEEEEESSCHHH---HHHHHHHHHHHHHHTTCEEEEEEEEE-CSS------------------------SCCCHHH
T ss_pred CCcEEEEEeeCCCHHH---HHHHHHHHHHHHHHhcCCceEEEEEe-CCC------------------------Cccchhh
Confidence 4799999999998766 666666553 34566665322 111 1112222
Q ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccCCCh
Q 026505 133 AERLLLEAALEDPANQRFVLLSDSCVPIYNF 163 (237)
Q Consensus 133 Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s~ 163 (237)
|-=..+.+|++....+|++++.++|+|..+.
T Consensus 116 a~N~G~~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 116 LLNVGFQEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred hhhhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence 2222343454545679999999999998764
No 4
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=47.44 E-value=23 Score=34.21 Aligned_cols=113 Identities=11% Similarity=-0.034 Sum_probs=61.9
Q ss_pred CCCCceEEEEEEeCCCCChHHHHHHHHhhhcCC-----CeeEEEEeCCCCCccccccC-CcceeceecCCcceeec-Ccc
Q 026505 56 YDGPAKIAFLFLARRELPLDFLWGSFFEIADVE-----NFSIFIHSAPGFVFDELTTR-SKFFYGRQLSNSIQVAW-GES 128 (237)
Q Consensus 56 ~~~~~KiAfLIlah~~~~~~~l~~rl~~~ld~~-----~~~iyIHvD~k~~~~~~~~~-~~vf~~r~i~~r~~V~W-Gg~ 128 (237)
...++|++.+|.+++..+. +.+.++++-.. ...=.|=||..+.-...... ..... ....++.+.- +..
T Consensus 176 ~~~~pkVSVVIptYN~~~~---L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~--~~~~~I~vI~~~N~ 250 (657)
T 4fix_A 176 APGTANIAVGIPTFNRPAD---CVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAA--RLGSRLSIHDQPNL 250 (657)
T ss_dssp CCSCCCEEEECCBSSCHHH---HHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHH--HHGGGEEEEECCCC
T ss_pred CCCCCeEEEEEEecCCHHH---HHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHH--hcCCCEEEEECCCC
Confidence 3456899999999998766 78888877432 22224567766532110000 00000 0001222221 122
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcC
Q 026505 129 SMIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMAS 173 (237)
Q Consensus 129 SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s-~~~I~~fL~~~ 173 (237)
+.-.|--..++.|....+.+|+++|..++++-.+ .+.+.+++..+
T Consensus 251 G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~ 296 (657)
T 4fix_A 251 GGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFA 296 (657)
T ss_dssp HHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHB
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhC
Confidence 3344666778888775578999999888877522 23444455544
No 5
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=34.14 E-value=2.1e+02 Score=24.15 Aligned_cols=110 Identities=13% Similarity=0.054 Sum_probs=57.1
Q ss_pred CCCceEEEEEEeCCCCChHHHHHHHHhhhc----CCCeeEEEEeCCCCCcc--ccc-cC-Cccee-ceecCCcceeecCc
Q 026505 57 DGPAKIAFLFLARRELPLDFLWGSFFEIAD----VENFSIFIHSAPGFVFD--ELT-TR-SKFFY-GRQLSNSIQVAWGE 127 (237)
Q Consensus 57 ~~~~KiAfLIlah~~~~~~~l~~rl~~~ld----~~~~~iyIHvD~k~~~~--~~~-~~-~~vf~-~r~i~~r~~V~WGg 127 (237)
..++++..+|-+|+..+. +.+.++++- ...+.|+| ||..+.-+ +.. .. ..+.. .+.+. +.. .-+
T Consensus 45 ~~~~~vSViIp~yN~~~~---l~~~l~sl~~q~~~~~~eiiv-VDdgS~D~t~~~~~~~~~~~~~~~~~~~-~~~-~n~- 117 (329)
T 3ckj_A 45 KAGRTISVVLPALDEEDT---IGSVIDSISPLVDGLVDELIV-LDSGSTDDTEIRAVAAGARVVSREQALP-EVP-IRP- 117 (329)
T ss_dssp TTTCCEEEEEEESSCTTT---HHHHHHHHGGGBTTTBSEEEE-EECSCCSSHHHHHHHTTCEEEEHHHHCT-TSC-CCC-
T ss_pred ccCCcEEEEEeeCCCHHH---HHHHHHHHHHhhCCCCcEEEE-EeCCCCchHHHHHHHhhhhhccceeeec-cCC-CCC-
Confidence 345889999999998766 555555552 22467777 66554311 111 01 11110 00010 011 122
Q ss_pred ccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCC--ChHHHHHHHhcC-CCCce
Q 026505 128 SSMIAAERLLLEAALEDPANQRFVLLSDSCVPIY--NFSYVYKYLMAS-PRSFV 178 (237)
Q Consensus 128 ~SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~--s~~~I~~fL~~~-~~~FI 178 (237)
+...|.-..++.| ..+|++++.+.|.++. -.+.+.+.+.++ +...+
T Consensus 118 -G~~~a~n~g~~~a----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v 166 (329)
T 3ckj_A 118 -GKGEALWRSLAAS----RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLV 166 (329)
T ss_dssp -SHHHHHHHHHHHC----CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEE
T ss_pred -CHHHHHHHHHHhC----CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEE
Confidence 3455655666655 3488888888887332 245566665544 34444
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=29.05 E-value=2.9e+02 Score=25.42 Aligned_cols=102 Identities=9% Similarity=-0.000 Sum_probs=56.0
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHhhhcC----CCeeEEEEeCCCCCc-c----ccccCCcceeceecCCcceeecCccc
Q 026505 59 PAKIAFLFLARRELPLDFLWGSFFEIADV----ENFSIFIHSAPGFVF-D----ELTTRSKFFYGRQLSNSIQVAWGESS 129 (237)
Q Consensus 59 ~~KiAfLIlah~~~~~~~l~~rl~~~ld~----~~~~iyIHvD~k~~~-~----~~~~~~~vf~~r~i~~r~~V~WGg~S 129 (237)
.|++..+|.+++..+. +.+.++++-. ..+.|+|--|...+- . +......+. .+. ..-.+.+
T Consensus 92 ~p~vsviIp~~n~~~~---l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~---~i~----~~~~~~g 161 (625)
T 2z86_A 92 IDGLSIVIPTYNRAKI---LAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIK---YVR----QKDYGYQ 161 (625)
T ss_dssp CCCEEEEEEESSCHHH---HHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEE---EEE----ECCCSCC
T ss_pred CCcEEEEEecCCcHHH---HHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeE---EEE----eCCCCcc
Confidence 3789999999998655 6666666622 367777766654431 1 111111111 111 1122334
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcCC
Q 026505 130 MIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMASP 174 (237)
Q Consensus 130 lV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s-~~~I~~fL~~~~ 174 (237)
...|--.+++.| ..++++++.+.|.|-.+ .+.+.+.+.+++
T Consensus 162 ~~~a~N~g~~~a----~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~ 203 (625)
T 2z86_A 162 LCAVRNLGLRAA----KYNYVAILDCDMAPNPLWVQSYMELLAVDD 203 (625)
T ss_dssp HHHHHHHHHHHC----CSSEEEEECTTEEECTTHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHhC----CcCEEEEECCCCCCCHHHHHHHHHHHhcCC
Confidence 555555566655 45889999888888332 233444454444
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=22.32 E-value=4.6e+02 Score=24.08 Aligned_cols=92 Identities=10% Similarity=-0.073 Sum_probs=52.5
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHhhh---cCCCeeEEEEeCCCCCcc-----ccc-cCCcceeceecCCcceeecCccc
Q 026505 59 PAKIAFLFLARRELPLDFLWGSFFEIA---DVENFSIFIHSAPGFVFD-----ELT-TRSKFFYGRQLSNSIQVAWGESS 129 (237)
Q Consensus 59 ~~KiAfLIlah~~~~~~~l~~rl~~~l---d~~~~~iyIHvD~k~~~~-----~~~-~~~~vf~~r~i~~r~~V~WGg~S 129 (237)
+++++.+|.+++..+. +.+.++++ ..+++.|+|--|...+-. +.. ....+. .+. -..+ +
T Consensus 374 ~~~vsiii~~yn~~~~---l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~---~~~----~~n~--G 441 (625)
T 2z86_A 374 VPLVSIYIPAYNCSKY---IVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVR---FIS----QKNK--G 441 (625)
T ss_dssp SCSEEEEEEESSCTTT---HHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEE---EEE----ECCC--C
T ss_pred CCeEEEEEeCCCCHHH---HHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEE---EEe----CCCC--C
Confidence 4789999999998776 66666665 235677777666544311 100 111221 221 1122 3
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHH
Q 026505 130 MIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYK 168 (237)
Q Consensus 130 lV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s~~~I~~ 168 (237)
...|--.+++.| ..+|+.+|.+.|++ ..+.+..
T Consensus 442 ~~~a~n~g~~~a----~g~~i~~ld~D~~~--~~~~l~~ 474 (625)
T 2z86_A 442 IGSASNTAVRLC----RGFYIGQLDSDDFL--EPDAVEL 474 (625)
T ss_dssp HHHHHHHHHHHC----CSSEEEECCTTCEE--CTTHHHH
T ss_pred HHHHHHHHHHhc----CCCEEEEECCCccc--ChhHHHH
Confidence 455555556555 34889999888886 3444443
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=21.93 E-value=2.8e+02 Score=21.43 Aligned_cols=102 Identities=7% Similarity=0.007 Sum_probs=54.9
Q ss_pred CceEEEEEEeCCCCChHHHHHHHHhhhc---CCCeeEEEEeCCCCCc-----cccc-cCCcceeceecCCcceeecCccc
Q 026505 59 PAKIAFLFLARRELPLDFLWGSFFEIAD---VENFSIFIHSAPGFVF-----DELT-TRSKFFYGRQLSNSIQVAWGESS 129 (237)
Q Consensus 59 ~~KiAfLIlah~~~~~~~l~~rl~~~ld---~~~~~iyIHvD~k~~~-----~~~~-~~~~vf~~r~i~~r~~V~WGg~S 129 (237)
+|++..+|.+|+..+. +.+.++++- .+++.|.|=-|...+- ++.. ...++. .+.. . ..+
T Consensus 4 ~p~vsViIp~yn~~~~---l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~---~i~~----~--n~G 71 (240)
T 3bcv_A 4 IPKVSVIVPIYNVEKY---LDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIK---VIHK----K--NAG 71 (240)
T ss_dssp CCSEEEEEEESSCTTT---HHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEE---EEEC----C--CCC
T ss_pred CCcEEEEEecCCCHHH---HHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEE---EEEC----C--CCC
Confidence 4689999999999877 666666652 3566777744443321 0100 112221 2211 1 223
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhcCCCC
Q 026505 130 MIAAERLLLEAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMASPRS 176 (237)
Q Consensus 130 lV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s-~~~I~~fL~~~~~~ 176 (237)
.-.|--.+++.| .-+|+++|.+.|++-.+ .+.+.+.+.+++..
T Consensus 72 ~~~a~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~ 115 (240)
T 3bcv_A 72 LGMACNSGLDVA----TGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCD 115 (240)
T ss_dssp HHHHHHHHHHHC----CSSEEEECCTTCCCCTTHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHc----CCCEEEEECCCCcCCHHHHHHHHHHHHhcCCC
Confidence 445555555554 34899999988886433 23344444443333
No 9
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=20.38 E-value=25 Score=25.32 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=26.6
Q ss_pred cceeecCcccHHHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHhc
Q 026505 120 SIQVAWGESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLMA 172 (237)
Q Consensus 120 r~~V~WGg~SlV~Atl~Ll~~Al~~~~~~~f~LLSGsD~PL~s~~~I~~fL~~ 172 (237)
...|.-|+.++-..+ +- =+|..+|+|+++.+++.+-+.+
T Consensus 42 ~t~c~~Gd~~~ta~E------l~--------kll~~~DFP~ksA~~lAd~iv~ 80 (84)
T 1iio_A 42 DTTCKSGDVELKASD------AG--------QVLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp CCCCCBTTBCCCTTT------TG--------GGSCGGGSBCSHHHHHHHHHHH
T ss_pred CCceeeCCEeeeHHH------HH--------hhCCcccCCCCCHHHHHHHHHH
Confidence 566777887653221 11 2567899999999999877653
No 10
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=17.06 E-value=3.6e+02 Score=26.25 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=26.3
Q ss_pred CCCceEEEEEEeCCCCChHHHHHHHHhhh---cCC--CeeEEEEeCCC
Q 026505 57 DGPAKIAFLFLARRELPLDFLWGSFFEIA---DVE--NFSIFIHSAPG 99 (237)
Q Consensus 57 ~~~~KiAfLIlah~~~~~~~l~~rl~~~l---d~~--~~~iyIHvD~k 99 (237)
...+++..+|-+++..+. ++++.++++ +.+ ++.|+|=-|..
T Consensus 137 ~~~P~VSViIPtyNe~~~--lL~~~L~Sl~~q~yp~~~~eIiVVDDgS 182 (802)
T 4hg6_A 137 EELPTVDILVPSYNEPAD--MLSVTLAAAKNMIYPARLRTVVLCDDGG 182 (802)
T ss_dssp TTCCCEEEEEECTTCCHH--HHHHHHHHHHTSSCCTTCCEEEEESTTC
T ss_pred cCCCcEEEEEEECCCCHH--HHHHHHHHHHhccCCCCcEEEEEEECCC
Confidence 445789999999988743 235555555 222 26777766654
Done!