BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026506
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96FX7|TRM61_HUMAN tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
OS=Homo sapiens GN=TRMT61A PE=1 SV=1
Length = 289
Score = 227 bits (579), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 151/219 (68%), Gaps = 4/219 (1%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V +G
Sbjct: 4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWTL L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+APTGH++T +FH+QRA ARE+F+ V +VTV +D+ GF S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGF--GVSHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
+P PW A+ A LK + G CSFSPCIEQVQR+C++L
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220
>sp|Q6AY46|TRM61_RAT tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
OS=Rattus norvegicus GN=Trmt61a PE=2 SV=1
Length = 290
Score = 226 bits (576), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V ++G
Sbjct: 4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCSRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWT+ L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
++APTGH++T +FH+QRA ARE+F++ VS +VTV +D+ GF +AD++FLD
Sbjct: 124 SIAPTGHLHTVEFHQQRADKAREEFQQHRVSQWVTVHTQDVCRSGF--GVVHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
+P PW A+ A LK + G CSFSPCIEQVQR+C++L
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220
>sp|Q80XC2|TRM61_MOUSE tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
OS=Mus musculus GN=Trmt61a PE=2 SV=1
Length = 290
Score = 226 bits (576), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 153/219 (69%), Gaps = 4/219 (1%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V ++G
Sbjct: 4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWT+ L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+VAPTGH++T +FH+QRA ARE+F+ +S +VTV +D+ GF +AD++FLD
Sbjct: 124 SVAPTGHLHTVEFHQQRADKAREEFQEHRLSQWVTVHTQDVCCSGF--GVVHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
+P PW A+ A LK + G CSFSPCIEQVQR+C++L
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220
>sp|A6H791|TRM61_BOVIN tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
OS=Bos taurus GN=TRMT61A PE=2 SV=1
Length = 285
Score = 224 bits (572), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 151/219 (68%), Gaps = 4/219 (1%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V +G
Sbjct: 4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWTL L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+APTGH++T +FH+QRA ARE+F+ V +VTV +D+ GF S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTVLNQDVCRSGF--GVSHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESL 226
+P PW A+ A LK + G CSFSPCIEQVQR+C++L
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQAL 220
>sp|Q86JJ0|TRM61_DICDI tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trmt61a
OS=Dictyostelium discoideum GN=trmt61a PE=1 SV=1
Length = 312
Score = 194 bits (494), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 149/217 (68%), Gaps = 3/217 (1%)
Query: 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFV 71
+ IKEGD V++Y D M + + N+ + ++FG+++H + IGK +GS + S+ G GF
Sbjct: 5 NKIIKEGDRVVMYNGKDNMAVLTMESNNVYNSKFGSYRHKNIIGKEYGSKLSSDNGNGFC 64
Query: 72 YLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA 131
+++A TPELW++ L HRTQIL+ DIS +I LEL G +ESGTGSGSL++S+AR +A
Sbjct: 65 HVIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIA 124
Query: 132 PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGF-PDEFSGLADSIFLDL 189
P GH++TF+FHE+R AR+DF+ G+ ++TV RD G +GF + + D++FLDL
Sbjct: 125 PKGHLFTFEFHEERVKFARKDFKDNGLDQYITVTHRDACGKEGFLRQDINNDIDAVFLDL 184
Query: 190 PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226
P PW AI +A ++ +LCSFSPCIEQVQ +C L
Sbjct: 185 PSPWDAIENAIAVMHDGSMLCSFSPCIEQVQNTCLKL 221
>sp|P0CS08|TRM61_CRYNJ tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=TRM61 PE=3 SV=1
Length = 433
Score = 191 bits (485), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 143/216 (66%), Gaps = 7/216 (3%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN--KGGFVYL 73
I+ GD+VI+Y D M A+ + F N++G + H IG+ +GS + S G+V++
Sbjct: 14 IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHV 73
Query: 74 LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT 133
L PTPELWTL L HRTQILY+ DIS++ M L + G V+E+GTGSGS+T SL+R+V P+
Sbjct: 74 LRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPS 133
Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
G V +F++H QR +A ++FE G+++ V + R++ +GF D + + +FLDLP PW
Sbjct: 134 GQVMSFEYHRQRFETALKEFESHGLTN-VRLQHRNVCKEGFGD--AQGVEGVFLDLPAPW 190
Query: 194 LAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLR 227
AIP A K L++D I +C FSPC+EQV ++ LR
Sbjct: 191 EAIPHAVKALRRDIITRICCFSPCLEQVLKTVTCLR 226
>sp|P0CS09|TRM61_CRYNB tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=TRM61 PE=3 SV=1
Length = 433
Score = 191 bits (485), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 143/216 (66%), Gaps = 7/216 (3%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN--KGGFVYL 73
I+ GD+VI+Y D M A+ + F N++G + H IG+ +GS + S G+V++
Sbjct: 14 IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHV 73
Query: 74 LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT 133
L PTPELWTL L HRTQILY+ DIS++ M L + G V+E+GTGSGS+T SL+R+V P+
Sbjct: 74 LRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPS 133
Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
G V +F++H QR +A ++FE G+++ V + R++ +GF D + + +FLDLP PW
Sbjct: 134 GQVMSFEYHRQRFETALKEFESHGLTN-VRLQHRNVCKEGFGD--AQGVEGVFLDLPAPW 190
Query: 194 LAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLR 227
AIP A K L++D I +C FSPC+EQV ++ LR
Sbjct: 191 EAIPHAVKALRRDIITRICCFSPCLEQVLKTVTCLR 226
>sp|Q6CN53|TRM61_KLULA tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TRM61
PE=3 SV=1
Length = 407
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 143/240 (59%), Gaps = 28/240 (11%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SN 66
+ IKEGDLV+ + D +K + V F R+GAF HSD IGKPFGS + SN
Sbjct: 7 YKDTIKEGDLVLAWLSRDNLKPITVKAGEVFNTRYGAFSHSDMIGKPFGSQIAIRTKGSN 66
Query: 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
+ GF+++L PTPELW++ L HRTQI+Y D S+++ +E P V+E+GTGSGS + +
Sbjct: 67 RFGFIHVLQPTPELWSISLPHRTQIVYTPDSSYIMQRMECNPRSRVIEAGTGSGSFSHAF 126
Query: 127 ARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGFP--------D 176
AR+ GH+++++FHE R A+++F+ G+ + T+ RD+ GF
Sbjct: 127 ARSA---GHLFSYEFHEVRYEQAKQEFKEHGLLEAGNTTITHRDVCKDGFEIKNGDTTSH 183
Query: 177 EFSG--------LADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESL 226
EF G AD IFLDLP PW AIP+ ++ ++ LC FSPCIEQV ++ E+L
Sbjct: 184 EFRGPEETKVELNADCIFLDLPAPWDAIPNLTSVISKEKKVNLCCFSPCIEQVDKTLEAL 243
>sp|Q5A416|TRM61_CANAL tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=TRM61 PE=3 SV=1
Length = 335
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 132/223 (59%), Gaps = 7/223 (3%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GF 70
+ I+EGDLV+ Y +K + V + F R+G F+H IG +G + KG GF
Sbjct: 6 YKNYIEEGDLVLAYISRSTIKPINVKKGEIFNTRYGHFEHDKMIGMKYGEQMPGAKGYGF 65
Query: 71 VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
++LL PTPELWTL L HRTQI+Y D S++I L + PG V+E+GTGS S T S AR V
Sbjct: 66 IHLLHPTPELWTLSLPHRTQIVYSPDSSYIIQRLNVKPGSRVIEAGTGSASFTHSFARTV 125
Query: 131 APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLADSIFLDL 189
+G V+T++FHE R A+++ E + + T+ RD+ GF D S D +FLDL
Sbjct: 126 TLSGKVFTYEFHEPRYLEAKKELEEHKLDN-TTITHRDVCNDGFSIDNESIEGDVVFLDL 184
Query: 190 PQPWLAIPSAKKML---KQDGILCSFSPCIEQVQRSCESLRLN 229
P PW AIP ++ K GI C FSPCIEQV R+ +L N
Sbjct: 185 PSPWDAIPHLDSVISTSKAAGICC-FSPCIEQVDRTVRALEEN 226
>sp|Q6BX32|TRM61_DEBHA tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TRM61 PE=3 SV=2
Length = 369
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 136/227 (59%), Gaps = 12/227 (5%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GF 70
+ I+EGDLV+ + +K + V + S R+G F+H IG +G + KG GF
Sbjct: 6 YKDIIEEGDLVLAFLGRSNIKPITVTKGSQLNTRYGNFEHDRMIGMKYGEQMPGAKGVGF 65
Query: 71 VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
++LL PTPELWT+ L HRTQI+Y D S++I L + G V+E+GTGSGS + S AR +
Sbjct: 66 IHLLYPTPELWTVSLPHRTQIVYTPDSSYIIQRLNVTSGTRVIEAGTGSGSFSHSFARTI 125
Query: 131 APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-----PDEF---SGL- 181
G ++T++FHE R A+++ E G+ + + RD+ GF P++F G+
Sbjct: 126 GVEGRLFTYEFHEPRYIEAKKELEDHGLLANTVITHRDVCNDGFEISNIPEDFKKDDGIC 185
Query: 182 ADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESL 226
D +FLDLP PW AIP+ K ++ +C FSPCIEQV+++ ++L
Sbjct: 186 GDVVFLDLPSPWTAIPNLKSVISHQSRVGICCFSPCIEQVEKTVKAL 232
>sp|O14307|TRM61_SCHPO tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trm61
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cpd1 PE=3 SV=1
Length = 364
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 131/223 (58%), Gaps = 8/223 (3%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN-KGGF 70
+ + ++ GDL + + + + + + F N++GAF HS+ IGK +G + S K GF
Sbjct: 6 YKQRVENGDLAVAWIGRNKLIPLHIEAEKTFHNQYGAFPHSEMIGKRYGEQIASTAKQGF 65
Query: 71 VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
+YLL PTPELWTL L HRTQI+Y DI+ + L + G V+E+GTGS S++ +++R V
Sbjct: 66 IYLLQPTPELWTLALPHRTQIVYTPDIALIHQKLRITYGTRVIEAGTGSASMSHAISRTV 125
Query: 131 APTGHVYTFDFHEQRAASAREDFER----TGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186
P G ++TF++H R +A ++F V + RD+ GF D + D+IF
Sbjct: 126 GPLGRLFTFEYHATRYQTALQEFREHEMLIDVGGNTHLTHRDVCKDGFLDTEVKV-DAIF 184
Query: 187 LDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLR 227
LDLP PW AIP + D +C FSPCIEQ+Q S E+LR
Sbjct: 185 LDLPAPWEAIPHLSNHVNHDKSTRICCFSPCIEQIQHSAEALR 227
>sp|P46959|TRM61_YEAST tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=GCD14 PE=1 SV=1
Length = 383
Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 137/238 (57%), Gaps = 26/238 (10%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SN 66
+ IKEGDL +++ D +K V++ F R+G+F H D IGKP+GS + SN
Sbjct: 9 YKDLIKEGDLTLIWVSRDNIKPVRMHSEEVFNTRYGSFPHKDIIGKPYGSQIAIRTKGSN 68
Query: 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
K FV++L PTPELWTL L HRTQI+Y D S+++ L P V+E+GTGSGS + +
Sbjct: 69 KFAFVHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPHSRVIEAGTGSGSFSHAF 128
Query: 127 ARAVAPTGHVYTFDFHEQRAASAREDFERTG-VSSFVTVGVRDIQGQGF--------PDE 177
AR+V GH+++F+FH R A E+F+ G + VT+ RD+ GF E
Sbjct: 129 ARSV---GHLFSFEFHHIRYEQALEEFKEHGLIDDNVTITHRDVCQGGFLIKKGDTTSYE 185
Query: 178 F-------SGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESL 226
F S A+ +FLDLP PW AIP ++ D LC FSPCIEQV ++ + L
Sbjct: 186 FGNNETAASLNANVVFLDLPAPWDAIPHLDSVISVDEKVGLCCFSPCIEQVDKTLDVL 243
>sp|Q755M8|TRM61_ASHGO tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TRM61 PE=3 SV=1
Length = 406
Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 138/242 (57%), Gaps = 27/242 (11%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SN 66
+ I EGDLV+V+ +K +++ F R+G+F H D +G+P+GS + SN
Sbjct: 7 YKDLIAEGDLVLVWISRGNVKQLRIKSGEVFNTRYGSFAHDDIVGRPYGSQIGVRTKGSN 66
Query: 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
+ GF+++L PTPELWTL L HRTQI+Y D S+++ L P V+E+GTGSGS + +
Sbjct: 67 RFGFIHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLGCSPQSRVIEAGTGSGSFSHAF 126
Query: 127 ARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGF---------- 174
AR V G +++++FH R A +F+ G+ VT+ RD+ +GF
Sbjct: 127 ARTV---GQLFSYEFHHMRYEQALAEFQEHGLIADGNVTITHRDVCQKGFLIKAGDTTSY 183
Query: 175 -----PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD--GILCSFSPCIEQVQRSCESLR 227
D S AD IFLDLP PW AIP ++ +D LC FSPCIEQV ++ E+L
Sbjct: 184 EFLEGQDSVSVNADCIFLDLPAPWEAIPHLDAVIAKDRTARLCCFSPCIEQVDKTLEALE 243
Query: 228 LN 229
L+
Sbjct: 244 LH 245
>sp|Q6FL77|TRM61_CANGA tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=TRM61 PE=3 SV=1
Length = 374
Score = 173 bits (439), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 133/238 (55%), Gaps = 26/238 (10%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV-----FSN 66
+ I+EGDL +++ D +K V + N F R+G+F H D IGKP+GS + +
Sbjct: 8 YKDLIQEGDLALIWISRDNIKPVTINANETFNTRYGSFPHKDMIGKPYGSQIAIRTKVAK 67
Query: 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
K FV+++ P+PELWTL L HRTQI+Y D S+++ L P V+E+GTGSGS + +
Sbjct: 68 KFAFVHVMQPSPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPNSRVIEAGTGSGSFSHAF 127
Query: 127 ARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGF----------- 174
AR+V G +Y+++FH R A E+F+ G+ T+ RD+ GF
Sbjct: 128 ARSV---GQLYSYEFHPVRYEQATEEFKEHGLLDKNTIITHRDVCKDGFTIKKTDETSYQ 184
Query: 175 ----PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESL 226
++ AD IFLDLP PW AIP ++ D LC FSPCIEQV ++ E L
Sbjct: 185 FKADEEQLQIKADVIFLDLPAPWEAIPHIDSVIDNDEKVGLCCFSPCIEQVDKTLEVL 242
>sp|Q6C0P9|TRM61_YARLI tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TRM61 PE=3 SV=1
Length = 389
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 141/223 (63%), Gaps = 10/223 (4%)
Query: 11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSA-FQNRFGAFKHS--DWIGKPFGSMVFSNK 67
++ I++GDLV+ + +K + V + F R+GAF H D G GSM +K
Sbjct: 4 AYKDTIEDGDLVLGWMTRTAIKPIVVEKKEGLFNTRYGAFPHRNMDKYGAQLGSM---SK 60
Query: 68 GGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLA 127
GF++L+ PTPELWTL L HRTQI+Y D S+++ L++ PG V+ESGTGSGS T +++
Sbjct: 61 QGFIHLIHPTPELWTLSLPHRTQIVYTTDSSYIVQRLKIRPGSTVIESGTGSGSFTHAIS 120
Query: 128 RAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIF 186
R+ G VY+++FHE+R A+++FER +++ + RD+ GF E + A ++F
Sbjct: 121 RSAGLAGKVYSYEFHEERYNLAKQEFERHQLTNVIPTH-RDVCNDGFDIENIDVNATAVF 179
Query: 187 LDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLR 227
LDLP PW AIP ++++ + + +C FSPC EQV ++ ++L+
Sbjct: 180 LDLPAPWTAIPHLERVIDRSVVSRVCCFSPCFEQVVKAVQALQ 222
>sp|Q4WUT7|TRM61_ASPFU tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trm61
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=trm61 PE=3 SV=1
Length = 502
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 140/289 (48%), Gaps = 80/289 (27%)
Query: 19 GDLVIVYERHD----CMKAVKVCQNSAFQN------RFGAFKHSDWIGKPFGSMVF---- 64
GDL +++ R D + ++ +N ++ RFG+F HS I +P+GS +
Sbjct: 15 GDLALLHLRRDQTIPTILKLEDDENQGYKEGKVTNTRFGSFPHSTLIDQPWGSQIVASVV 74
Query: 65 ------------------------SNK--------------GGFVYLLAPTPELWTLVLS 86
SNK GF++LL PTPELWT L
Sbjct: 75 DTGSRGRKNQSSKKRKADDLDTPTSNKDEAQSSPGTPRAAASGFLHLLYPTPELWTASLP 134
Query: 87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV-------APT------ 133
HRTQ++Y D S+++ L + PG ++E+G GSGS T + RAV AP
Sbjct: 135 HRTQVVYTPDYSYILHRLCVRPGSTIIEAGAGSGSFTHASVRAVFNGYPSEAPAAKKRRL 194
Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PDEFSG---LADSIFLD 188
G V +F+FH QRA RE+ G+ + V V RD+ GF D +G A++IFLD
Sbjct: 195 GKVCSFEFHAQRAQRIREEIHDHGLDALVEVTHRDVYEDGFLLGDPKTGKSPKANAIFLD 254
Query: 189 LPQPWLAI-------PS-AKKMLKQDG--ILCSFSPCIEQVQRSCESLR 227
LP PWLA+ PS A+ L +C+FSPCIEQVQR+ +LR
Sbjct: 255 LPAPWLALKHLVRRPPSGAESPLDPSSPVYICTFSPCIEQVQRTITTLR 303
>sp|Q2U3W4|TRM61_ASPOR tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trm61
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=trm61 PE=3 SV=1
Length = 474
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 110/202 (54%), Gaps = 34/202 (16%)
Query: 57 KPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESG 116
KP + GF++LL PTPELWT L HRTQ++Y D S+++ L PG V+E+G
Sbjct: 101 KPSPQTPVAASSGFLHLLYPTPELWTASLPHRTQVVYTPDYSYILHRLRARPGSTVIEAG 160
Query: 117 TGSGSLTTSLARAV--------APT-----GHVYTFDFHEQRAASAREDFERTGVSSFVT 163
GSGS T + RAV PT G V +F+FH QRA R + + G+ V
Sbjct: 161 AGSGSFTHASVRAVFNGYPSDDQPTKKRRLGKVCSFEFHAQRAEKVRVEVNQHGLDGLVE 220
Query: 164 VGVRDIQGQGF--PDEFSG---LADSIFLDLPQPWLAIPSAKKMLKQ--DGI-------- 208
V RD+ GF D +G A++IFLDLP PWLA+ K +++ +G
Sbjct: 221 VTHRDVYEDGFLLGDPKTGKSPKANAIFLDLPAPWLAL---KHLVRNPPEGTESPLDPTS 277
Query: 209 ---LCSFSPCIEQVQRSCESLR 227
+C+FSPC+EQVQR+ +LR
Sbjct: 278 PVYICTFSPCLEQVQRTISTLR 299
>sp|Q9V1J7|TRMI_PYRAB tRNA (adenine(57)-N(1)/adenine(58)-N(1))-methyltransferase TrmI
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=trmI PE=1
SV=1
Length = 253
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
I+EGD V++ + + V + F G K + IG+ FG + S+KG +L
Sbjct: 2 IREGDKVVLVDPRGKRYLITVSKRD-FHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
Query: 76 PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGH 135
P + + QI++ D + ++ Y + PG ++E+G GSG+LT LA V P G
Sbjct: 61 PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
V +++ E A A E+ + G VT+ ++DI +G +E D + LDLPQP
Sbjct: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY-EGIEEEN---VDHVILDLPQPERV 176
Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227
+ A K LK G +++PC QV R E LR
Sbjct: 177 VEHAAKALKPGGFFVAYTPCSNQVMRLHEKLR 208
>sp|O33253|TRMI_MYCTU tRNA (adenine(58)-N(1))-methyltransferase TrmI OS=Mycobacterium
tuberculosis GN=trmI PE=1 SV=1
Length = 280
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 15/196 (7%)
Query: 39 NSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADIS 98
+ F G+ H IG GS+V S+ G +L P + + + Q++Y D +
Sbjct: 30 GAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAA 89
Query: 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158
++ ++ PG VLE+G GSG+LT SL RAV P G V ++ EQRA A + R V
Sbjct: 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISY---EQRADHA--EHARRNV 144
Query: 159 SSFV-------TVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCS 211
S + V D+ PD G D LD+ PW + + ++L G+L
Sbjct: 145 SGCYGQPPDNWRLVVSDLADSELPD---GSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMV 201
Query: 212 FSPCIEQVQRSCESLR 227
+ + Q+ R E+LR
Sbjct: 202 YVATVTQLSRIVEALR 217
>sp|Q57598|TRMI_METJA tRNA (adenine(57)-N(1)/adenine(58)-N(1))-methyltransferase TrmI
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=trmI PE=3
SV=1
Length = 282
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 60 GSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGS 119
G + S+KG YL+ PT + L DI F+I + G V+E+GTGS
Sbjct: 39 GVELKSHKGHTFYLVEPTMFDILKRMKRTVTTLLPKDIGFIIARAGIREGETVVEAGTGS 98
Query: 120 GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS------------------- 160
G+LT L+ AV TG V T+D + A AR++ R G
Sbjct: 99 GALTMYLSNAVGKTGKVITYDIRPEFAKVARKNLLRVGAIKKGQKIIGLDEEFDDEDEIE 158
Query: 161 ------FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKML-KQDGILCSFS 213
V + D++ + DE D I LDLP PW + +AKK L K+ G + ++
Sbjct: 159 IEDGLFNVIQKIGDVREK--IDEKD--VDVIVLDLPDPWNVVENAKKALNKKRGRIVTYL 214
Query: 214 PCIEQVQRSCESLR 227
P IEQV+++ E L+
Sbjct: 215 PYIEQVKKTVEKLK 228
>sp|Q5SKN4|TRMI_THET8 tRNA (adenine(58)-N(1))-methyltransferase TrmI OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trmI
PE=3 SV=1
Length = 255
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 7/184 (3%)
Query: 38 QNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADI 97
+ F + G+ H + G +V ++ G + + PT E + L + Y D
Sbjct: 23 EGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMKRSATPTYPKDA 82
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
S ++ L+L PG VLE+GTGSG LT LARAV G V +++ A A +
Sbjct: 83 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERN----- 137
Query: 158 VSSFVTV-GVRDIQGQGFPDEFSGLA-DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215
V +F V VR G+ E A D + LDL +PW A+ A LK D L ++ P
Sbjct: 138 VRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKALEKAALALKPDRFLVAYLPN 197
Query: 216 IEQV 219
I QV
Sbjct: 198 ITQV 201
>sp|Q8GBB2|TRMI_THET2 tRNA (adenine(58)-N(1))-methyltransferase TrmI OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=trmI PE=1 SV=2
Length = 255
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 85/184 (46%), Gaps = 7/184 (3%)
Query: 38 QNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADI 97
+ F + G+ H + G +V ++ G + + PT E + L + Y D
Sbjct: 23 EGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMKRSATPTYPKDA 82
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
S ++ L+L PG VLE+GTGSG LT LARAV G V +++ A A +
Sbjct: 83 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERN----- 137
Query: 158 VSSFVTV-GVRDIQGQGFPDEFSGLA-DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215
V +F V VR G+ E A D + LDL +PW + A LK D L ++ P
Sbjct: 138 VRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPN 197
Query: 216 IEQV 219
I QV
Sbjct: 198 ITQV 201
>sp|Q9BVS5|TR61B_HUMAN tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial OS=Homo
sapiens GN=TRMT61B PE=1 SV=2
Length = 477
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 24/240 (10%)
Query: 6 PTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFS 65
P+ S R + G+L++ K K+ + N FG +S+W PFG +V
Sbjct: 141 PSCSTSRERPFQAGELILAETGEGETKFKKLFR----LNNFGLL-NSNWGAVPFGKIVGK 195
Query: 66 NKG-------GFVYLLA-PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGT 117
G G Y+L P E + +++ T I + DI+ ++ +++ PG VLE+G+
Sbjct: 196 FPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGS 255
Query: 118 GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS----------SFVTVGVR 167
GSG ++ L++AV G V +F+ + A+++++ S V +
Sbjct: 256 GSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 315
Query: 168 DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227
DI G D S D++ LD+ P + +P LK G+ + I QV + +R
Sbjct: 316 DISG-ATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIR 374
>sp|A2BKH8|PIMT_HYPBU Protein-L-isoaspartate O-methyltransferase OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=pcm PE=3 SV=1
Length = 241
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT-------GHVYTFDFHEQRAASA 149
++ + Y +L PG VLE G GSG +A VAP+ GHVYT + + A A
Sbjct: 74 VAMMTEYADLKPGMKVLEVGAGSGYHAAVMAEVVAPSDEPREHWGHVYTIERIPELAEFA 133
Query: 150 REDFERTGVSSFVTVGVRDIQGQGFPDE 177
R + ER G + VTV V D +G+P++
Sbjct: 134 RRNLERAGYADRVTVIVGD-GSRGYPEK 160
>sp|A3DMG3|PIMT_STAMF Protein-L-isoaspartate O-methyltransferase OS=Staphylothermus
marinus (strain ATCC 43588 / DSM 3639 / F1) GN=pcm PE=3
SV=1
Length = 225
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 108 PGCLVLESGTGSGSLTTSLARAVAPT-----GHVYTFDFHEQRAASAREDFERTGVSSFV 162
PG +VLE GTGSG LA VA GHVYT + + A A+++ ERTG +V
Sbjct: 79 PGNIVLEIGTGSGYQAAVLAEIVAKQDPNRRGHVYTVERIPELAEFAKKNLERTGYIEYV 138
Query: 163 TVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKM 202
TV V D +G+P++ D I + P + P K++
Sbjct: 139 TVIVGD-GTKGYPEKAP--YDRIIVTAAAPEVPKPLLKQL 175
>sp|A8AAV7|PIMT_IGNH4 Protein-L-isoaspartate O-methyltransferase OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=pcm PE=3 SV=1
Length = 211
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156
+++++ EL G VLE GTGSG +A V P GHVYT + + A ARE +
Sbjct: 64 VAYMVEAAELRRGDKVLEVGTGSGYHAAVMAELVGPEGHVYTIERIPELAERARERLKAL 123
Query: 157 GVSSFVTVGVRDIQGQGFP 175
G ++ VTV V D +G+P
Sbjct: 124 GYNN-VTVLVGD-GSKGYP 140
>sp|Q8TYL4|PIMT_METKA Protein-L-isoaspartate O-methyltransferase OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pcm
PE=3 SV=1
Length = 226
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156
++ + L+ PG VLE G GSG +A V P G V T + + A AR + ++T
Sbjct: 71 VAIMTELLDPRPGHKVLEVGAGSGYHAAVVAELVKPDGRVITVERIPELADFARNNLKKT 130
Query: 157 GVSSFVTVGVRDIQGQGFPDE 177
G FV V V D +G+P E
Sbjct: 131 GYDRFVKVLVGD-GTKGYPPE 150
>sp|A9AFC0|UBIE_BURM1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia multivorans (strain ATCC 17616 / 249)
GN=ubiE PE=3 SV=1
Length = 243
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGYKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
+ VT + D + FPD + + F ++ +A+ +++ K G ++ F
Sbjct: 108 I---VTPSLLCDAEKIPFPDNYFDVVTVAFGLRNMTHKDVALAEMRRVAKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCE 224
S E ++++ +
Sbjct: 165 SKVWEPLKKAYD 176
>sp|O26915|PIMT_METTH Protein-L-isoaspartate O-methyltransferase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pcm PE=3 SV=1
Length = 217
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 72 YLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA 131
Y+ P P +S + IA+I L+L PG VLE GTG G +A +
Sbjct: 45 YMDMPLPIGEGQTISAPHMVAMIAEI------LDLEPGMKVLEIGTGCGYNAAVIAEIIG 98
Query: 132 PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQ 191
P GH+YT + AR+ G + +TV + QGF DE I++
Sbjct: 99 PEGHLYTVERIGILYERARKKLRSLGYDN-ITV-IHGDGSQGFADEAP--YSRIYVTAAA 154
Query: 192 PWLAIPSAKKM 202
P++ P K++
Sbjct: 155 PYIPDPLMKQL 165
>sp|Q9YDA1|PIMT_AERPE Protein-L-isoaspartate O-methyltransferase OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=pcm PE=3 SV=2
Length = 260
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 83 LVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFH 142
L + H I + ++ L+ PG VL+ G GSG + LA V P G VY +
Sbjct: 83 LPIGHGQTISAPGVVGRMLQLLDPQPGEKVLDVGAGSGYQSALLAELVTPGGRVYAVERI 142
Query: 143 EQRAASAREDFERTG 157
+ A ARE+ E+TG
Sbjct: 143 PELAEYARENLEKTG 157
>sp|A1RSC6|PIMT_PYRIL Protein-L-isoaspartate O-methyltransferase OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=pcm PE=3 SV=1
Length = 207
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 99 FVIMYLELV---PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155
V M ELV PG +LE GTGSG A A+ G VYT + ++ A A ++ ER
Sbjct: 60 MVAMMCELVEPRPGMKILEVGTGSGYQAAVCAEAIERKGKVYTIEIVKELAIYAAQNIER 119
Query: 156 TGVSSFVTV 164
G V V
Sbjct: 120 LGYWGIVEV 128
>sp|Q8TT94|PIMT2_METAC Protein-L-isoaspartate O-methyltransferase 2 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=pcm2 PE=3 SV=1
Length = 238
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163
LEL G VLE GTGSG +A V TGH+Y+ + E AR++ E+ G + VT
Sbjct: 94 LELSEGHKVLEIGTGSGYNAAVMAELVGKTGHIYSVERIEPLVNFARKNLEQMGYDN-VT 152
Query: 164 VGVRDIQGQGFP 175
V + + G+P
Sbjct: 153 VLLEN-GSMGYP 163
>sp|Q2T139|UBIE_BURTA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia thailandensis (strain E264 / ATCC 700388
/ DSM 13276 / CIP 106301) GN=ubiE PE=3 SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
L+ A +F I + PG VL+ G+G LT + A+A PTG V+ D +E R+
Sbjct: 42 LHRAWKAFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRD 101
Query: 152 DFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG- 207
GV VT + D + FPD + + F ++ A+ +++ K G
Sbjct: 102 RLLDKGV---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGR 158
Query: 208 -ILCSFSPCIEQVQRSCE 224
++ FS E ++++ +
Sbjct: 159 VMVLEFSKVWEPLKKAYD 176
>sp|Q63XA0|UBIE_BURPS Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia pseudomallei (strain K96243) GN=ubiE
PE=3 SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
L+ A +F I + PG VL+ G+G LT + A+A PTG V+ D +E R+
Sbjct: 42 LHRAWKAFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRD 101
Query: 152 DFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG- 207
GV VT + D + FPD + + F ++ A+ +++ K G
Sbjct: 102 RLLDKGV---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGR 158
Query: 208 -ILCSFSPCIEQVQRSCE 224
++ FS E ++++ +
Sbjct: 159 VMVLEFSKVWEPLKKAYD 176
>sp|A3N5U8|UBIE_BURP6 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia pseudomallei (strain 668) GN=ubiE PE=3
SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
L+ A +F I + PG VL+ G+G LT + A+A PTG V+ D +E R+
Sbjct: 42 LHRAWKAFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRD 101
Query: 152 DFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG- 207
GV VT + D + FPD + + F ++ A+ +++ K G
Sbjct: 102 RLLDKGV---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGR 158
Query: 208 -ILCSFSPCIEQVQRSCE 224
++ FS E ++++ +
Sbjct: 159 VMVLEFSKVWEPLKKAYD 176
>sp|Q3JVZ6|UBIE_BURP1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia pseudomallei (strain 1710b) GN=ubiE PE=3
SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
L+ A +F I + PG VL+ G+G LT + A+A PTG V+ D +E R+
Sbjct: 42 LHRAWKAFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRD 101
Query: 152 DFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG- 207
GV VT + D + FPD + + F ++ A+ +++ K G
Sbjct: 102 RLLDKGV---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGR 158
Query: 208 -ILCSFSPCIEQVQRSCE 224
++ FS E ++++ +
Sbjct: 159 VMVLEFSKVWEPLKKAYD 176
>sp|A3NRJ4|UBIE_BURP0 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia pseudomallei (strain 1106a) GN=ubiE PE=3
SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
L+ A +F I + PG VL+ G+G LT + A+A PTG V+ D +E R+
Sbjct: 42 LHRAWKAFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRD 101
Query: 152 DFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG- 207
GV VT + D + FPD + + F ++ A+ +++ K G
Sbjct: 102 RLLDKGV---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGR 158
Query: 208 -ILCSFSPCIEQVQRSCE 224
++ FS E ++++ +
Sbjct: 159 VMVLEFSKVWEPLKKAYD 176
>sp|A1V753|UBIE_BURMS Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia mallei (strain SAVP1) GN=ubiE PE=3 SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
L+ A +F I + PG VL+ G+G LT + A+A PTG V+ D +E R+
Sbjct: 42 LHRAWKAFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRD 101
Query: 152 DFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG- 207
GV VT + D + FPD + + F ++ A+ +++ K G
Sbjct: 102 RLLDKGV---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGR 158
Query: 208 -ILCSFSPCIEQVQRSCE 224
++ FS E ++++ +
Sbjct: 159 VMVLEFSKVWEPLKKAYD 176
>sp|Q62MP4|UBIE_BURMA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia mallei (strain ATCC 23344) GN=ubiE PE=3
SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
L+ A +F I + PG VL+ G+G LT + A+A PTG V+ D +E R+
Sbjct: 42 LHRAWKAFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRD 101
Query: 152 DFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG- 207
GV VT + D + FPD + + F ++ A+ +++ K G
Sbjct: 102 RLLDKGV---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGR 158
Query: 208 -ILCSFSPCIEQVQRSCE 224
++ FS E ++++ +
Sbjct: 159 VMVLEFSKVWEPLKKAYD 176
>sp|A2S8L1|UBIE_BURM9 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia mallei (strain NCTC 10229) GN=ubiE PE=3
SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
L+ A +F I + PG VL+ G+G LT + A+A PTG V+ D +E R+
Sbjct: 42 LHRAWKAFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRD 101
Query: 152 DFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG- 207
GV VT + D + FPD + + F ++ A+ +++ K G
Sbjct: 102 RLLDKGV---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGR 158
Query: 208 -ILCSFSPCIEQVQRSCE 224
++ FS E ++++ +
Sbjct: 159 VMVLEFSKVWEPLKKAYD 176
>sp|A3MNT8|UBIE_BURM7 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia mallei (strain NCTC 10247) GN=ubiE PE=3
SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151
L+ A +F I + PG VL+ G+G LT + A+A PTG V+ D +E R+
Sbjct: 42 LHRAWKAFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRD 101
Query: 152 DFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG- 207
GV VT + D + FPD + + F ++ A+ +++ K G
Sbjct: 102 RLLDKGV---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGR 158
Query: 208 -ILCSFSPCIEQVQRSCE 224
++ FS E ++++ +
Sbjct: 159 VMVLEFSKVWEPLKKAYD 176
>sp|B4EBC4|UBIE_BURCJ Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia cepacia (strain J2315 / LMG 16656)
GN=ubiE PE=3 SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT S A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDIAAGTGDLTKSFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEF 178
V VT + D + FPD +
Sbjct: 108 V---VTPSLLCDAEKIPFPDNY 126
>sp|B1JYJ6|UBIE_BURCC Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia cenocepacia (strain MC0-3) GN=ubiE PE=3
SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT S A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDIAAGTGDLTKSFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEF 178
V VT + D + FPD +
Sbjct: 108 V---VTPSLLCDAEKIPFPDNY 126
>sp|Q39D13|UBIE_BURS3 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia sp. (strain 383) GN=ubiE PE=3 SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDLAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + L F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKIPFPDNYFDLVTVAFGLRNMTHKDAALAEMRRVTKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCE 224
S + ++++ +
Sbjct: 165 SKVWDPLKKAYD 176
>sp|A0KAF5|UBIE_BURCH Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia cenocepacia (strain HI2424) GN=ubiE PE=3
SV=1
Length = 243
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT S A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDIAAGTGDLTKSFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEF 178
+ VT + D + FPD +
Sbjct: 108 I---VTPSLLCDAEKIPFPDNY 126
>sp|Q1BTN4|UBIE_BURCA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia cenocepacia (strain AU 1054) GN=ubiE
PE=3 SV=1
Length = 243
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT S A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDIAAGTGDLTKSFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEF 178
+ VT + D + FPD +
Sbjct: 108 I---VTPSLLCDAEKIPFPDNY 126
>sp|Q0BBY4|UBIE_BURCM Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)
GN=ubiE PE=3 SV=1
Length = 243
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT S A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDIAAGTGDLTKSFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEF 178
+ VT + D + FPD +
Sbjct: 108 I---VTPSLLCDAEKIPFPDNY 126
>sp|B1YWF9|UBIE_BURA4 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia ambifaria (strain MC40-6) GN=ubiE PE=3
SV=1
Length = 243
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT S A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDIAAGTGDLTKSFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEF 178
+ VT + D + FPD +
Sbjct: 108 I---VTPSLLCDAEKIPFPDNY 126
>sp|A3MY16|PIMT_PYRCJ Protein-L-isoaspartate O-methyltransferase OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=pcm PE=3 SV=1
Length = 207
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 77 TPELWTLVLSHRTQILY----IADISFVIMYLELV---PGCLVLESGTGSGSLTTSLARA 129
TPE + R L+ I+ V M EL+ PG +LE GTGSG A A
Sbjct: 34 TPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIEPRPGMKILEVGTGSGYHAAVCAEA 93
Query: 130 VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164
+ G VYT + + A A ++ ER G V V
Sbjct: 94 IERQGKVYTVEIVRELAIFAAQNLERLGYLGVVEV 128
>sp|Q8ZYN0|PIMT_PYRAE Protein-L-isoaspartate O-methyltransferase OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=pcm PE=3 SV=1
Length = 205
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 99 FVIMYLELV---PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155
V M EL+ PG +LE GTGSG A A+ G +YT + ++ A A ++ ER
Sbjct: 60 MVAMMCELIEPRPGMKILEVGTGSGYHAAVCAEAIEKKGRIYTIEIVKELAVFAAQNLER 119
Query: 156 TGVSSFVTV 164
G V V
Sbjct: 120 LGYWGVVEV 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,351,794
Number of Sequences: 539616
Number of extensions: 3839494
Number of successful extensions: 9262
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 8983
Number of HSP's gapped (non-prelim): 341
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)