Query 026506
Match_columns 237
No_of_seqs 233 out of 2886
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:54:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2519 GCD14 tRNA(1-methylade 100.0 4.8E-38 1E-42 242.0 24.5 217 15-235 1-218 (256)
2 KOG2915 tRNA(1-methyladenosine 100.0 2.8E-36 6.1E-41 232.2 23.0 229 6-235 3-233 (314)
3 PF08704 GCD14: tRNA methyltra 100.0 7.9E-31 1.7E-35 206.0 16.8 167 69-235 1-169 (247)
4 COG2226 UbiE Methylase involve 99.8 5.4E-19 1.2E-23 138.0 12.3 133 74-214 20-157 (238)
5 PF01209 Ubie_methyltran: ubiE 99.8 1.1E-18 2.5E-23 137.3 10.0 134 73-213 15-153 (233)
6 COG2242 CobL Precorrin-6B meth 99.8 4.6E-17 9.9E-22 121.0 16.0 127 99-230 25-153 (187)
7 PRK00377 cbiT cobalt-precorrin 99.8 6.9E-17 1.5E-21 124.9 16.6 140 92-234 23-166 (198)
8 COG2518 Pcm Protein-L-isoaspar 99.7 7.8E-17 1.7E-21 122.3 13.4 122 85-214 49-170 (209)
9 TIGR02752 MenG_heptapren 2-hep 99.7 1.3E-16 2.8E-21 126.4 14.9 111 100-214 37-152 (231)
10 PLN02233 ubiquinone biosynthes 99.7 2E-16 4.3E-21 127.2 14.7 111 100-213 65-182 (261)
11 PRK08287 cobalt-precorrin-6Y C 99.7 7.5E-16 1.6E-20 118.1 16.6 129 100-235 23-154 (187)
12 PRK13942 protein-L-isoaspartat 99.7 3.5E-16 7.6E-21 122.0 14.9 121 88-213 56-176 (212)
13 PF12847 Methyltransf_18: Meth 99.7 1.2E-16 2.6E-21 112.2 11.1 101 108-213 1-111 (112)
14 PRK04266 fibrillarin; Provisio 99.7 1.6E-15 3.6E-20 118.8 17.3 159 58-235 34-208 (226)
15 PRK13944 protein-L-isoaspartat 99.7 4.4E-16 9.6E-21 120.9 14.0 119 91-213 55-173 (205)
16 TIGR00080 pimt protein-L-isoas 99.7 5.3E-16 1.1E-20 121.5 14.6 120 89-213 58-177 (215)
17 PF05175 MTS: Methyltransferas 99.7 1.7E-16 3.7E-21 119.7 9.9 127 100-235 23-159 (170)
18 PF01135 PCMT: Protein-L-isoas 99.7 1.1E-16 2.5E-21 123.6 8.9 122 87-213 51-172 (209)
19 PRK00121 trmB tRNA (guanine-N( 99.7 1.2E-15 2.5E-20 118.3 14.3 119 108-231 40-175 (202)
20 PLN02244 tocopherol O-methyltr 99.7 1.8E-15 3.9E-20 126.1 16.1 109 100-213 105-223 (340)
21 COG4123 Predicted O-methyltran 99.7 1.2E-15 2.5E-20 119.3 13.7 135 99-236 35-193 (248)
22 KOG1540 Ubiquinone biosynthesi 99.7 2.1E-15 4.6E-20 116.3 14.1 133 76-214 71-215 (296)
23 PRK11873 arsM arsenite S-adeno 99.7 1.9E-15 4.1E-20 122.6 14.7 130 102-235 71-228 (272)
24 PRK07402 precorrin-6B methylas 99.7 1E-14 2.2E-19 112.7 16.9 126 99-228 31-157 (196)
25 TIGR00446 nop2p NOL1/NOP2/sun 99.7 2.1E-15 4.6E-20 121.4 13.6 133 90-227 51-215 (264)
26 TIGR00091 tRNA (guanine-N(7)-) 99.7 2.5E-15 5.3E-20 115.8 12.9 121 107-232 15-153 (194)
27 PF13847 Methyltransf_31: Meth 99.6 5E-15 1.1E-19 109.7 12.6 106 107-215 2-112 (152)
28 PRK00107 gidB 16S rRNA methylt 99.6 1E-14 2.2E-19 111.1 14.5 119 106-231 43-163 (187)
29 COG1063 Tdh Threonine dehydrog 99.6 1.7E-15 3.8E-20 126.8 10.9 189 13-217 73-273 (350)
30 PRK14903 16S rRNA methyltransf 99.6 4.7E-15 1E-19 127.0 13.3 113 100-216 229-368 (431)
31 COG2264 PrmA Ribosomal protein 99.6 6.8E-15 1.5E-19 118.0 12.8 124 106-235 160-286 (300)
32 PRK11933 yebU rRNA (cytosine-C 99.6 1.5E-14 3.2E-19 124.2 15.6 136 89-228 90-259 (470)
33 TIGR00537 hemK_rel_arch HemK-r 99.6 1.3E-14 2.9E-19 110.3 13.8 123 100-232 11-160 (179)
34 TIGR00138 gidB 16S rRNA methyl 99.6 1.4E-14 3E-19 110.1 13.6 118 108-231 42-163 (181)
35 PRK14901 16S rRNA methyltransf 99.6 1.2E-14 2.6E-19 125.0 14.5 116 99-216 243-386 (434)
36 COG1064 AdhP Zn-dependent alco 99.6 8.5E-15 1.8E-19 119.5 11.7 177 12-215 75-261 (339)
37 TIGR00406 prmA ribosomal prote 99.6 3.9E-14 8.5E-19 115.5 14.9 122 106-234 157-280 (288)
38 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.3E-14 2.8E-19 115.9 11.7 103 106-213 54-164 (247)
39 PRK14967 putative methyltransf 99.6 4.4E-14 9.5E-19 111.2 14.2 123 101-231 29-178 (223)
40 PRK11036 putative S-adenosyl-L 99.6 3.4E-14 7.4E-19 114.1 13.8 107 100-213 37-149 (255)
41 PRK14902 16S rRNA methyltransf 99.6 4.1E-14 9E-19 122.1 14.9 114 99-216 241-381 (444)
42 KOG0024 Sorbitol dehydrogenase 99.6 3.3E-14 7.1E-19 113.5 12.9 185 11-213 78-273 (354)
43 TIGR02469 CbiT precorrin-6Y C5 99.6 1E-13 2.2E-18 98.8 14.4 110 100-213 11-122 (124)
44 COG2813 RsmC 16S RNA G1207 met 99.6 3.1E-14 6.7E-19 113.6 12.8 127 99-235 149-285 (300)
45 COG2230 Cfa Cyclopropane fatty 99.6 4.4E-14 9.6E-19 112.4 13.6 109 99-215 63-178 (283)
46 PRK14904 16S rRNA methyltransf 99.6 4.9E-14 1.1E-18 121.6 15.0 112 99-216 241-379 (445)
47 PRK15001 SAM-dependent 23S rib 99.6 4E-14 8.6E-19 118.4 13.8 110 99-213 219-340 (378)
48 PTZ00098 phosphoethanolamine N 99.6 4.7E-14 1E-18 113.6 13.8 108 99-214 43-157 (263)
49 PRK00312 pcm protein-L-isoaspa 99.6 1.2E-13 2.7E-18 107.8 15.3 116 91-214 61-176 (212)
50 COG4122 Predicted O-methyltran 99.6 3.1E-14 6.7E-19 109.8 11.5 122 90-212 41-165 (219)
51 PF02353 CMAS: Mycolic acid cy 99.6 4.1E-14 8.9E-19 114.0 12.7 107 99-213 53-166 (273)
52 PRK14968 putative methyltransf 99.6 1.2E-13 2.6E-18 105.8 14.6 127 100-233 15-169 (188)
53 TIGR01177 conserved hypothetic 99.6 5.6E-14 1.2E-18 116.8 13.4 129 92-230 166-309 (329)
54 PLN02781 Probable caffeoyl-CoA 99.6 2.2E-14 4.9E-19 113.3 10.4 111 100-211 60-176 (234)
55 PF13659 Methyltransf_26: Meth 99.6 7.7E-15 1.7E-19 103.8 6.9 101 109-214 1-116 (117)
56 TIGR00563 rsmB ribosomal RNA s 99.6 5.9E-14 1.3E-18 120.5 13.6 115 99-216 229-370 (426)
57 PRK14121 tRNA (guanine-N(7)-)- 99.6 1.5E-13 3.3E-18 114.5 15.5 125 99-228 113-250 (390)
58 PTZ00146 fibrillarin; Provisio 99.6 7.4E-14 1.6E-18 112.0 13.2 130 102-235 126-269 (293)
59 PF06325 PrmA: Ribosomal prote 99.6 1.7E-14 3.7E-19 116.7 9.1 119 106-233 159-279 (295)
60 TIGR03533 L3_gln_methyl protei 99.6 2.4E-13 5.2E-18 110.6 15.7 118 107-231 120-268 (284)
61 PRK00517 prmA ribosomal protei 99.6 1.2E-13 2.5E-18 110.6 13.6 116 106-234 117-235 (250)
62 PRK11188 rrmJ 23S rRNA methylt 99.5 7E-14 1.5E-18 108.7 11.7 121 101-236 43-188 (209)
63 PRK08317 hypothetical protein; 99.5 3.5E-13 7.7E-18 106.9 16.1 110 100-214 11-125 (241)
64 TIGR03534 RF_mod_PrmC protein- 99.5 2.7E-13 5.8E-18 108.6 15.3 122 108-236 87-240 (251)
65 PRK13943 protein-L-isoaspartat 99.5 1.7E-13 3.6E-18 112.7 14.0 116 93-213 65-180 (322)
66 PRK11207 tellurite resistance 99.5 1.7E-13 3.6E-18 105.8 13.3 105 100-212 22-133 (197)
67 smart00828 PKS_MT Methyltransf 99.5 1.9E-13 4.1E-18 107.7 13.6 120 110-234 1-141 (224)
68 PRK10901 16S rRNA methyltransf 99.5 3E-13 6.4E-18 116.2 15.8 119 91-215 225-373 (427)
69 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.6E-14 7.8E-19 109.3 9.1 102 107-216 58-164 (243)
70 PLN02396 hexaprenyldihydroxybe 99.5 1.2E-13 2.5E-18 113.6 12.1 103 107-215 130-237 (322)
71 PRK04457 spermidine synthase; 99.5 3.7E-13 8.1E-18 108.1 14.8 123 107-232 65-197 (262)
72 TIGR00536 hemK_fam HemK family 99.5 3.9E-13 8.5E-18 109.5 14.9 121 109-235 115-267 (284)
73 PF08241 Methyltransf_11: Meth 99.5 5.3E-14 1.1E-18 95.4 8.2 90 113-211 1-95 (95)
74 TIGR00438 rrmJ cell division p 99.5 1.9E-13 4.2E-18 104.8 12.1 117 103-234 27-167 (188)
75 PLN02476 O-methyltransferase 99.5 1.3E-13 2.9E-18 110.4 11.4 112 100-212 110-227 (278)
76 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.4E-13 3.1E-18 113.5 11.9 127 101-235 105-254 (340)
77 PRK14966 unknown domain/N5-glu 99.5 4.8E-13 1E-17 112.3 15.1 124 106-235 249-403 (423)
78 PLN02336 phosphoethanolamine N 99.5 4.9E-13 1.1E-17 116.7 15.2 107 100-213 258-369 (475)
79 TIGR02716 C20_methyl_CrtF C-20 99.5 4.8E-13 1E-17 110.3 14.3 131 99-236 140-305 (306)
80 PRK00216 ubiE ubiquinone/menaq 99.5 6.8E-13 1.5E-17 105.4 14.6 111 100-213 43-158 (239)
81 PRK09328 N5-glutamine S-adenos 99.5 9.4E-13 2E-17 106.9 15.6 126 103-235 103-260 (275)
82 PLN03075 nicotianamine synthas 99.5 4.4E-13 9.5E-18 108.0 13.2 107 104-213 119-233 (296)
83 TIGR00452 methyltransferase, p 99.5 5.1E-13 1.1E-17 109.4 13.8 130 100-235 113-271 (314)
84 PRK15068 tRNA mo(5)U34 methylt 99.5 6.3E-13 1.4E-17 109.9 14.3 130 100-235 114-272 (322)
85 TIGR03704 PrmC_rel_meth putati 99.5 7.7E-13 1.7E-17 105.7 14.4 117 108-231 86-234 (251)
86 PRK14103 trans-aconitate 2-met 99.5 4.1E-13 8.9E-18 107.9 12.6 103 99-214 20-127 (255)
87 TIGR00740 methyltransferase, p 99.5 5.8E-13 1.3E-17 106.0 13.0 103 107-214 52-162 (239)
88 PF01596 Methyltransf_3: O-met 99.5 7.6E-14 1.6E-18 107.6 7.2 111 103-213 40-155 (205)
89 COG0144 Sun tRNA and rRNA cyto 99.5 1.3E-12 2.7E-17 109.3 14.9 134 87-224 133-301 (355)
90 PRK01544 bifunctional N5-gluta 99.5 5.6E-13 1.2E-17 116.3 13.1 122 108-235 138-291 (506)
91 PRK10258 biotin biosynthesis p 99.5 5E-13 1.1E-17 107.1 11.7 117 97-225 31-152 (251)
92 TIGR00477 tehB tellurite resis 99.5 7.3E-13 1.6E-17 102.1 11.9 104 100-212 22-132 (195)
93 COG2890 HemK Methylase of poly 99.5 8.5E-13 1.8E-17 106.8 12.7 115 111-233 113-259 (280)
94 COG4106 Tam Trans-aconitate me 99.5 5.5E-13 1.2E-17 100.7 10.3 106 100-216 22-132 (257)
95 PRK00811 spermidine synthase; 99.5 1E-12 2.2E-17 106.8 12.8 125 108-235 76-217 (283)
96 PRK09489 rsmC 16S ribosomal RN 99.5 1.6E-12 3.5E-17 108.0 14.1 109 99-215 187-305 (342)
97 PRK11805 N5-glutamine S-adenos 99.5 2.3E-12 5.1E-17 105.7 14.7 113 109-228 134-276 (307)
98 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 1.7E-12 3.6E-17 102.1 12.8 108 100-213 31-143 (223)
99 PRK01683 trans-aconitate 2-met 99.5 1.9E-12 4.2E-17 104.1 13.4 105 99-214 22-131 (258)
100 PF02390 Methyltransf_4: Putat 99.4 3.9E-12 8.4E-17 97.7 12.8 113 111-228 20-148 (195)
101 COG2521 Predicted archaeal met 99.4 5.5E-13 1.2E-17 101.7 7.1 130 101-235 127-275 (287)
102 PRK11088 rrmA 23S rRNA methylt 99.4 6.2E-12 1.3E-16 101.9 13.7 108 107-225 84-193 (272)
103 PLN02589 caffeoyl-CoA O-methyl 99.4 1.5E-12 3.1E-17 103.1 9.0 112 100-212 71-189 (247)
104 PRK12335 tellurite resistance 99.4 6.2E-12 1.3E-16 102.7 12.4 98 107-213 119-223 (287)
105 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.4E-11 3.1E-16 106.4 15.2 127 100-233 289-420 (443)
106 PRK09880 L-idonate 5-dehydroge 99.4 4.6E-12 1E-16 106.1 11.9 182 13-214 76-267 (343)
107 KOG1271 Methyltransferases [Ge 99.4 5.4E-12 1.2E-16 92.8 10.2 117 110-231 69-199 (227)
108 KOG1270 Methyltransferases [Co 99.4 2.1E-12 4.7E-17 100.4 8.3 97 109-214 90-196 (282)
109 PRK06922 hypothetical protein; 99.4 7.7E-12 1.7E-16 109.8 12.7 106 103-214 413-538 (677)
110 PLN02366 spermidine synthase 99.4 2.3E-11 5E-16 99.5 14.2 126 107-234 90-232 (308)
111 PRK11783 rlmL 23S rRNA m(2)G24 99.4 3E-12 6.5E-17 116.0 9.4 119 107-230 537-673 (702)
112 PF13649 Methyltransf_25: Meth 99.4 1.4E-12 3.1E-17 89.7 5.7 91 112-207 1-101 (101)
113 TIGR00417 speE spermidine synt 99.4 1.7E-11 3.6E-16 99.3 12.8 124 109-235 73-212 (270)
114 COG1041 Predicted DNA modifica 99.4 6.4E-12 1.4E-16 102.3 10.1 118 90-214 179-311 (347)
115 PF08242 Methyltransf_12: Meth 99.3 2.9E-13 6.3E-18 92.8 1.9 94 113-209 1-99 (99)
116 PRK15128 23S rRNA m(5)C1962 me 99.3 1.2E-11 2.7E-16 104.6 12.1 119 107-228 219-355 (396)
117 TIGR02072 BioC biotin biosynth 99.3 2.2E-11 4.9E-16 96.6 12.6 106 107-221 33-143 (240)
118 PF05401 NodS: Nodulation prot 99.3 6.2E-12 1.4E-16 94.5 8.3 123 103-235 38-177 (201)
119 PRK11705 cyclopropane fatty ac 99.3 2.3E-11 5E-16 102.8 12.7 103 99-213 158-267 (383)
120 PRK01581 speE spermidine synth 99.3 2.3E-11 5E-16 100.3 12.3 123 108-233 150-292 (374)
121 PF03848 TehB: Tellurite resis 99.3 3.5E-11 7.6E-16 91.4 11.7 105 100-213 22-133 (192)
122 PRK10909 rsmD 16S rRNA m(2)G96 99.3 4E-11 8.6E-16 92.2 11.9 103 107-214 52-160 (199)
123 KOG1122 tRNA and rRNA cytosine 99.3 3.1E-11 6.6E-16 99.6 11.1 113 100-216 233-373 (460)
124 PLN02823 spermine synthase 99.3 4.9E-11 1.1E-15 98.6 12.3 126 108-236 103-249 (336)
125 PF08003 Methyltransf_9: Prote 99.3 1.3E-10 2.8E-15 93.0 14.2 105 100-210 107-216 (315)
126 TIGR03366 HpnZ_proposed putati 99.3 3.3E-11 7.2E-16 98.1 11.2 182 15-214 25-219 (280)
127 COG0220 Predicted S-adenosylme 99.3 1.5E-10 3.3E-15 90.4 14.1 113 109-225 49-176 (227)
128 KOG4300 Predicted methyltransf 99.3 2.5E-11 5.4E-16 91.2 9.2 121 103-227 71-196 (252)
129 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.3 1.2E-11 2.5E-16 100.5 8.1 125 91-218 66-223 (283)
130 TIGR02819 fdhA_non_GSH formald 99.3 4.4E-11 9.6E-16 101.9 12.1 188 13-215 80-301 (393)
131 TIGR00479 rumA 23S rRNA (uraci 99.3 9.3E-11 2E-15 101.1 14.2 125 100-231 284-414 (431)
132 smart00650 rADc Ribosomal RNA 99.3 1.1E-10 2.3E-15 88.0 12.4 103 99-210 4-110 (169)
133 KOG3191 Predicted N6-DNA-methy 99.3 7.7E-11 1.7E-15 86.7 11.0 119 107-231 42-187 (209)
134 PRK03612 spermidine synthase; 99.3 3.2E-11 6.9E-16 105.9 10.5 121 107-230 296-437 (521)
135 COG1062 AdhC Zn-dependent alco 99.3 1.8E-10 4E-15 93.1 13.7 188 11-213 72-285 (366)
136 PRK05785 hypothetical protein; 99.3 9.9E-11 2.1E-15 92.2 12.1 86 108-207 51-141 (226)
137 PLN02672 methionine S-methyltr 99.3 9.4E-11 2E-15 108.9 13.6 123 109-235 119-301 (1082)
138 PF01170 UPF0020: Putative RNA 99.3 7E-11 1.5E-15 89.6 10.3 119 91-213 11-150 (179)
139 COG2263 Predicted RNA methylas 99.2 3.2E-10 7E-15 84.4 13.3 107 105-226 42-155 (198)
140 KOG1661 Protein-L-isoaspartate 99.2 9.6E-11 2.1E-15 88.2 9.9 115 94-212 66-192 (237)
141 COG1092 Predicted SAM-dependen 99.2 4E-11 8.7E-16 100.4 8.8 104 108-213 217-336 (393)
142 PRK03522 rumB 23S rRNA methylu 99.2 1.1E-10 2.3E-15 96.6 11.3 122 102-231 167-290 (315)
143 PRK05134 bifunctional 3-demeth 99.2 2E-10 4.4E-15 91.0 12.4 110 98-214 38-152 (233)
144 smart00138 MeTrc Methyltransfe 99.2 1.1E-10 2.3E-15 94.1 10.6 104 106-212 97-241 (264)
145 PF03602 Cons_hypoth95: Conser 99.2 2.1E-11 4.6E-16 92.6 5.9 106 107-215 41-155 (183)
146 KOG2904 Predicted methyltransf 99.2 4.2E-10 9.1E-15 88.1 13.0 121 107-228 147-304 (328)
147 cd08281 liver_ADH_like1 Zinc-d 99.2 1.1E-10 2.5E-15 98.7 10.7 187 13-214 80-291 (371)
148 TIGR02085 meth_trns_rumB 23S r 99.2 3.2E-10 7E-15 95.8 13.3 120 103-231 228-350 (374)
149 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.8E-10 4E-15 89.7 10.9 98 107-212 33-151 (213)
150 PF13489 Methyltransf_23: Meth 99.2 4.8E-11 1E-15 88.8 7.3 94 106-216 20-118 (161)
151 PF02475 Met_10: Met-10+ like- 99.2 1.4E-10 3.1E-15 88.9 9.6 100 106-210 99-199 (200)
152 TIGR01983 UbiG ubiquinone bios 99.2 4.1E-10 9E-15 88.6 12.4 102 107-214 44-150 (224)
153 COG0742 N6-adenine-specific me 99.2 5.8E-10 1.2E-14 83.7 12.4 106 107-215 42-156 (187)
154 PLN02336 phosphoethanolamine N 99.2 2.7E-10 5.9E-15 99.5 12.3 107 98-213 27-142 (475)
155 PHA03412 putative methyltransf 99.2 2.8E-10 6.1E-15 88.6 10.6 92 108-209 49-159 (241)
156 KOG1663 O-methyltransferase [S 99.2 2.2E-10 4.8E-15 87.7 9.7 124 90-213 54-183 (237)
157 PRK13255 thiopurine S-methyltr 99.2 6.5E-10 1.4E-14 86.9 12.2 99 105-211 34-153 (218)
158 PF14801 GCD14_N: tRNA methylt 99.2 5.7E-11 1.2E-15 68.8 4.6 53 11-63 1-53 (54)
159 cd08239 THR_DH_like L-threonin 99.2 3.5E-10 7.6E-15 94.5 11.3 180 14-214 74-263 (339)
160 TIGR03438 probable methyltrans 99.2 3.9E-10 8.5E-15 92.6 11.3 107 107-213 62-177 (301)
161 TIGR02021 BchM-ChlM magnesium 99.2 6.3E-10 1.4E-14 87.4 11.8 105 100-214 45-158 (219)
162 COG2265 TrmA SAM-dependent met 99.2 4.8E-10 1E-14 95.6 11.8 125 99-230 284-413 (432)
163 PRK00536 speE spermidine synth 99.1 1.3E-09 2.8E-14 86.9 12.6 124 103-236 68-198 (262)
164 PF01269 Fibrillarin: Fibrilla 99.1 5.6E-09 1.2E-13 80.1 15.3 160 57-234 30-209 (229)
165 PF07021 MetW: Methionine bios 99.1 7E-10 1.5E-14 83.3 10.2 105 106-226 11-122 (193)
166 PRK01544 bifunctional N5-gluta 99.1 1.3E-09 2.8E-14 95.4 13.5 121 107-232 346-483 (506)
167 TIGR00095 RNA methyltransferas 99.1 6E-10 1.3E-14 85.3 10.0 105 107-214 48-160 (189)
168 PF10672 Methyltrans_SAM: S-ad 99.1 1.2E-10 2.5E-15 94.0 6.3 104 107-213 122-238 (286)
169 PHA03411 putative methyltransf 99.1 1.7E-09 3.7E-14 86.2 12.8 115 106-231 62-208 (279)
170 COG0421 SpeE Spermidine syntha 99.1 7.7E-10 1.7E-14 89.2 10.9 106 103-212 72-189 (282)
171 PLN02740 Alcohol dehydrogenase 99.1 8.7E-10 1.9E-14 93.7 11.9 184 14-214 85-301 (381)
172 COG2520 Predicted methyltransf 99.1 1.2E-09 2.6E-14 89.8 12.1 108 106-218 186-294 (341)
173 cd02440 AdoMet_MTases S-adenos 99.1 1.2E-09 2.5E-14 74.5 10.1 97 111-212 1-103 (107)
174 KOG0022 Alcohol dehydrogenase, 99.1 1E-09 2.2E-14 87.6 10.8 185 13-213 80-294 (375)
175 PLN02827 Alcohol dehydrogenase 99.1 1.3E-09 2.9E-14 92.5 12.1 184 14-214 83-296 (378)
176 TIGR03587 Pse_Me-ase pseudamin 99.1 1E-09 2.2E-14 85.1 10.4 93 106-211 41-140 (204)
177 PRK10309 galactitol-1-phosphat 99.1 1.1E-09 2.3E-14 92.0 11.4 181 14-214 73-261 (347)
178 TIGR02818 adh_III_F_hyde S-(hy 99.1 1.3E-09 2.7E-14 92.3 11.9 184 14-214 75-288 (368)
179 TIGR03451 mycoS_dep_FDH mycoth 99.1 1.5E-09 3.3E-14 91.5 12.3 185 14-214 74-277 (358)
180 PRK00050 16S rRNA m(4)C1402 me 99.1 2.1E-09 4.6E-14 87.2 12.5 89 98-189 9-98 (296)
181 PF01564 Spermine_synth: Sperm 99.1 6.7E-10 1.5E-14 88.4 9.2 125 108-235 76-217 (246)
182 cd08230 glucose_DH Glucose deh 99.1 2.2E-09 4.8E-14 90.4 12.6 179 14-214 76-270 (355)
183 PRK05031 tRNA (uracil-5-)-meth 99.1 2E-09 4.3E-14 90.6 12.2 116 110-231 208-337 (362)
184 PF06080 DUF938: Protein of un 99.1 1.2E-09 2.7E-14 83.1 9.9 119 109-228 26-163 (204)
185 PRK11727 23S rRNA mA1618 methy 99.1 3.3E-09 7.1E-14 87.1 13.0 81 108-190 114-198 (321)
186 TIGR02143 trmA_only tRNA (urac 99.1 2.3E-09 5E-14 89.9 12.1 124 100-231 190-328 (353)
187 PRK04338 N(2),N(2)-dimethylgua 99.1 1.2E-09 2.5E-14 92.2 10.3 102 108-214 57-159 (382)
188 PTZ00338 dimethyladenosine tra 99.1 1.4E-09 3.1E-14 88.6 10.5 89 97-193 25-113 (294)
189 PRK07580 Mg-protoporphyrin IX 99.1 8.5E-09 1.8E-13 81.5 14.4 99 106-214 61-166 (230)
190 KOG1499 Protein arginine N-met 99.0 1.3E-09 2.9E-14 88.5 9.3 103 102-210 54-164 (346)
191 PF09445 Methyltransf_15: RNA 99.0 6.4E-10 1.4E-14 82.1 6.7 77 110-190 1-78 (163)
192 cd08300 alcohol_DH_class_III c 99.0 3.2E-09 7E-14 89.8 11.3 186 14-214 76-289 (368)
193 PRK06202 hypothetical protein; 99.0 4.5E-09 9.9E-14 83.2 11.4 93 105-204 57-159 (232)
194 PRK13256 thiopurine S-methyltr 99.0 3.4E-09 7.4E-14 82.7 10.1 106 104-213 39-163 (226)
195 KOG0820 Ribosomal RNA adenine 99.0 2.9E-09 6.4E-14 83.4 9.6 87 96-190 46-132 (315)
196 KOG1541 Predicted protein carb 99.0 6.3E-09 1.4E-13 79.2 11.0 124 97-232 37-182 (270)
197 PRK14896 ksgA 16S ribosomal RN 99.0 9.4E-09 2E-13 82.7 12.4 87 96-193 17-103 (258)
198 cd08301 alcohol_DH_plants Plan 99.0 7.5E-09 1.6E-13 87.6 12.3 186 14-214 76-290 (369)
199 COG3963 Phospholipid N-methylt 99.0 4.4E-09 9.6E-14 76.6 9.2 109 99-213 39-156 (194)
200 PF05958 tRNA_U5-meth_tr: tRNA 99.0 3.6E-09 7.8E-14 88.7 9.9 123 99-231 188-327 (352)
201 TIGR00308 TRM1 tRNA(guanine-26 99.0 6.5E-09 1.4E-13 87.3 11.4 105 109-216 45-150 (374)
202 TIGR00755 ksgA dimethyladenosi 99.0 1.2E-08 2.6E-13 81.9 12.5 114 97-222 18-135 (253)
203 COG1889 NOP1 Fibrillarin-like 99.0 5.9E-08 1.3E-12 73.0 14.3 158 58-234 38-211 (231)
204 PLN02585 magnesium protoporphy 98.9 3E-08 6.5E-13 81.6 13.8 98 108-215 144-252 (315)
205 COG0293 FtsJ 23S rRNA methylas 98.9 9.9E-09 2.2E-13 78.2 10.0 118 106-235 43-181 (205)
206 cd08237 ribitol-5-phosphate_DH 98.9 2.7E-08 5.9E-13 83.3 12.8 95 104-213 159-256 (341)
207 PRK00274 ksgA 16S ribosomal RN 98.9 9E-09 2E-13 83.4 9.6 85 98-192 32-116 (272)
208 PF05185 PRMT5: PRMT5 arginine 98.9 8.1E-09 1.8E-13 88.8 9.6 98 109-210 187-294 (448)
209 TIGR02822 adh_fam_2 zinc-bindi 98.9 3.4E-08 7.3E-13 82.4 13.0 170 14-214 76-255 (329)
210 KOG2198 tRNA cytosine-5-methyl 98.9 1.8E-08 4E-13 82.4 10.9 128 87-216 132-298 (375)
211 cd08277 liver_alcohol_DH_like 98.9 3.4E-08 7.3E-13 83.5 12.4 185 13-214 74-287 (365)
212 PF00891 Methyltransf_2: O-met 98.9 3.3E-08 7.1E-13 78.8 11.6 100 100-214 92-200 (241)
213 PF02384 N6_Mtase: N-6 DNA Met 98.9 8.5E-09 1.8E-13 85.3 8.3 127 89-216 26-186 (311)
214 KOG1500 Protein arginine N-met 98.8 3.3E-08 7.1E-13 79.8 10.3 98 106-210 175-279 (517)
215 TIGR03201 dearomat_had 6-hydro 98.8 2.5E-08 5.4E-13 83.8 10.3 175 18-214 76-273 (349)
216 COG4976 Predicted methyltransf 98.8 1.2E-09 2.6E-14 83.5 1.9 114 90-213 107-225 (287)
217 PF05724 TPMT: Thiopurine S-me 98.8 1.3E-08 2.9E-13 79.4 7.8 104 102-210 31-152 (218)
218 PF10294 Methyltransf_16: Puta 98.8 1.4E-08 3E-13 76.7 7.4 120 106-227 43-171 (173)
219 PLN02586 probable cinnamyl alc 98.8 8.6E-08 1.9E-12 80.9 12.6 177 13-214 85-279 (360)
220 KOG3010 Methyltransferase [Gen 98.8 1.3E-08 2.8E-13 78.5 6.7 106 102-213 26-137 (261)
221 TIGR02081 metW methionine bios 98.8 2.5E-07 5.3E-12 71.3 13.9 85 107-204 12-103 (194)
222 KOG2899 Predicted methyltransf 98.8 5.1E-08 1.1E-12 75.3 9.5 48 106-154 56-103 (288)
223 PRK11783 rlmL 23S rRNA m(2)G24 98.8 2E-07 4.4E-12 84.9 14.4 126 91-217 172-351 (702)
224 COG0030 KsgA Dimethyladenosine 98.8 7.3E-08 1.6E-12 76.4 10.0 87 98-192 20-106 (259)
225 PRK10083 putative oxidoreducta 98.8 1.8E-07 3.8E-12 78.2 13.0 180 14-214 73-260 (339)
226 cd08283 FDH_like_1 Glutathione 98.8 1.1E-07 2.4E-12 81.1 11.8 187 13-214 73-307 (386)
227 PF02527 GidB: rRNA small subu 98.8 1.3E-07 2.9E-12 71.7 10.8 98 111-214 51-149 (184)
228 cd08233 butanediol_DH_like (2R 98.8 8E-08 1.7E-12 80.7 10.5 183 14-214 84-273 (351)
229 cd08285 NADP_ADH NADP(H)-depen 98.7 1.2E-07 2.7E-12 79.6 11.0 183 14-213 73-266 (351)
230 TIGR00006 S-adenosyl-methyltra 98.7 4.5E-07 9.7E-12 73.9 13.6 88 99-189 11-100 (305)
231 PF01728 FtsJ: FtsJ-like methy 98.7 1.1E-08 2.5E-13 77.8 4.2 124 100-235 12-161 (181)
232 KOG0023 Alcohol dehydrogenase, 98.7 1.1E-07 2.4E-12 76.5 9.6 183 11-214 82-280 (360)
233 KOG3420 Predicted RNA methylas 98.7 2.1E-08 4.6E-13 71.3 4.2 79 105-190 45-123 (185)
234 PLN02178 cinnamyl-alcohol dehy 98.7 2.6E-07 5.7E-12 78.4 11.6 177 13-214 79-274 (375)
235 cd08265 Zn_ADH3 Alcohol dehydr 98.7 2.4E-07 5.1E-12 78.9 11.2 183 14-213 107-307 (384)
236 PF03291 Pox_MCEL: mRNA cappin 98.7 1.8E-07 3.9E-12 77.5 10.0 109 108-219 62-192 (331)
237 PF05148 Methyltransf_8: Hypot 98.7 5.5E-08 1.2E-12 74.0 5.9 114 97-233 60-181 (219)
238 KOG1596 Fibrillarin and relate 98.7 6E-07 1.3E-11 69.4 11.6 105 101-212 149-260 (317)
239 PF08123 DOT1: Histone methyla 98.7 1.1E-07 2.5E-12 73.3 7.8 123 92-215 26-160 (205)
240 COG0116 Predicted N6-adenine-s 98.6 8.7E-07 1.9E-11 73.6 13.1 122 90-214 173-345 (381)
241 PF05219 DREV: DREV methyltran 98.6 3.7E-07 8E-12 71.8 10.1 88 108-211 94-186 (265)
242 PLN02232 ubiquinone biosynthes 98.6 2E-07 4.2E-12 69.6 8.1 74 137-213 1-81 (160)
243 cd08299 alcohol_DH_class_I_II_ 98.6 5.8E-07 1.3E-11 76.3 12.0 186 14-214 80-293 (373)
244 COG4076 Predicted RNA methylas 98.6 7.3E-08 1.6E-12 71.6 5.3 93 109-210 33-132 (252)
245 KOG2361 Predicted methyltransf 98.6 7.5E-08 1.6E-12 74.4 5.3 99 111-212 74-182 (264)
246 KOG4589 Cell division protein 98.6 4.7E-07 1E-11 67.3 9.2 115 106-235 67-206 (232)
247 cd08231 MDR_TM0436_like Hypoth 98.6 8.1E-07 1.8E-11 74.9 12.1 183 16-214 82-281 (361)
248 TIGR02987 met_A_Alw26 type II 98.6 7E-07 1.5E-11 79.1 12.1 82 108-190 31-121 (524)
249 TIGR00478 tly hemolysin TlyA f 98.6 8.4E-07 1.8E-11 69.6 11.2 101 100-212 66-170 (228)
250 KOG2187 tRNA uracil-5-methyltr 98.6 1.2E-06 2.7E-11 74.7 12.6 121 100-227 375-504 (534)
251 cd05279 Zn_ADH1 Liver alcohol 98.6 1.3E-06 2.9E-11 73.8 12.9 106 102-214 177-286 (365)
252 cd08296 CAD_like Cinnamyl alco 98.6 7.9E-07 1.7E-11 74.2 11.2 177 14-214 74-260 (333)
253 PLN02514 cinnamyl-alcohol dehy 98.6 1.4E-06 3.1E-11 73.4 12.5 181 14-214 83-276 (357)
254 PF04816 DUF633: Family of unk 98.5 9.7E-07 2.1E-11 68.2 10.3 114 112-231 1-118 (205)
255 COG0275 Predicted S-adenosylme 98.5 2.8E-06 6.1E-11 68.1 12.9 88 100-189 15-104 (314)
256 KOG1975 mRNA cap methyltransfe 98.5 3.1E-07 6.8E-12 73.9 7.5 118 106-228 115-249 (389)
257 cd08278 benzyl_alcohol_DH Benz 98.5 6.7E-07 1.4E-11 75.6 10.0 105 103-214 181-286 (365)
258 PF03059 NAS: Nicotianamine sy 98.5 1.2E-06 2.5E-11 70.4 10.5 102 109-213 121-230 (276)
259 cd05278 FDH_like Formaldehyde 98.5 1.4E-06 3.1E-11 72.9 11.4 185 13-213 73-267 (347)
260 COG4262 Predicted spermidine s 98.5 1.5E-06 3.4E-11 71.1 11.0 120 106-228 287-426 (508)
261 cd08286 FDH_like_ADH2 formalde 98.5 9.4E-07 2E-11 74.0 10.3 105 103-213 161-266 (345)
262 PLN02702 L-idonate 5-dehydroge 98.5 8.8E-07 1.9E-11 74.8 10.0 182 14-214 93-286 (364)
263 TIGR01202 bchC 2-desacetyl-2-h 98.5 1.8E-06 4E-11 71.3 11.4 89 107-214 143-232 (308)
264 PRK04148 hypothetical protein; 98.5 2.4E-06 5.3E-11 61.0 10.1 98 100-211 8-107 (134)
265 cd08256 Zn_ADH2 Alcohol dehydr 98.5 1.5E-06 3.3E-11 72.9 10.6 181 15-213 85-274 (350)
266 COG0357 GidB Predicted S-adeno 98.5 1.7E-06 3.6E-11 66.9 9.4 114 109-228 68-185 (215)
267 KOG3045 Predicted RNA methylas 98.4 1.9E-06 4.2E-11 67.3 9.3 111 98-233 169-287 (325)
268 PRK10611 chemotaxis methyltran 98.4 1.4E-06 3E-11 70.7 8.4 103 109-214 116-262 (287)
269 PF13578 Methyltransf_24: Meth 98.4 7.2E-08 1.6E-12 66.8 0.9 97 113-211 1-103 (106)
270 cd08287 FDH_like_ADH3 formalde 98.4 5.7E-06 1.2E-10 69.2 12.2 181 14-213 73-268 (345)
271 cd08238 sorbose_phosphate_red 98.4 3.4E-06 7.4E-11 72.5 10.9 108 103-212 170-287 (410)
272 cd05188 MDR Medium chain reduc 98.4 1.7E-06 3.7E-11 69.4 8.0 102 106-215 132-234 (271)
273 PF12147 Methyltransf_20: Puta 98.4 1.1E-05 2.3E-10 64.6 12.2 120 107-226 134-263 (311)
274 PF01795 Methyltransf_5: MraW 98.4 1.7E-06 3.6E-11 70.5 7.8 90 98-190 10-102 (310)
275 cd08279 Zn_ADH_class_III Class 98.4 3.3E-06 7.3E-11 71.3 10.0 104 102-213 176-282 (363)
276 cd05285 sorbitol_DH Sorbitol d 98.4 1.2E-05 2.5E-10 67.4 12.9 179 14-213 74-265 (343)
277 KOG2730 Methylase [General fun 98.3 3E-07 6.4E-12 70.1 2.8 77 108-190 94-174 (263)
278 TIGR00692 tdh L-threonine 3-de 98.3 6.9E-06 1.5E-10 68.7 11.1 179 14-214 75-262 (340)
279 PF13679 Methyltransf_32: Meth 98.3 1E-05 2.2E-10 59.0 10.5 104 106-216 23-134 (141)
280 PF00398 RrnaAD: Ribosomal RNA 98.3 7.7E-06 1.7E-10 66.0 10.7 100 96-201 18-119 (262)
281 cd08254 hydroxyacyl_CoA_DH 6-h 98.3 8E-06 1.7E-10 68.0 11.1 103 103-213 160-263 (338)
282 cd08232 idonate-5-DH L-idonate 98.3 2E-05 4.3E-10 65.8 13.3 180 14-213 73-262 (339)
283 PF05891 Methyltransf_PK: AdoM 98.3 1.1E-06 2.3E-11 67.6 4.9 99 108-212 55-160 (218)
284 PF01861 DUF43: Protein of unk 98.3 6.8E-05 1.5E-09 58.6 14.4 99 107-210 43-146 (243)
285 COG1352 CheR Methylase of chem 98.3 5.9E-06 1.3E-10 66.3 8.7 99 109-210 97-238 (268)
286 cd08282 PFDH_like Pseudomonas 98.3 1.9E-05 4.1E-10 67.1 12.2 185 14-213 73-285 (375)
287 COG0604 Qor NADPH:quinone redu 98.2 1.7E-05 3.8E-10 66.0 11.4 107 102-216 136-244 (326)
288 PF09243 Rsm22: Mitochondrial 98.2 2.8E-05 6E-10 63.1 12.2 116 107-228 32-154 (274)
289 cd08261 Zn_ADH7 Alcohol dehydr 98.2 1.7E-05 3.7E-10 66.1 11.2 104 102-213 153-258 (337)
290 KOG1562 Spermidine synthase [A 98.2 8.4E-06 1.8E-10 65.1 8.6 128 106-237 119-264 (337)
291 cd05281 TDH Threonine dehydrog 98.2 2.3E-05 5.1E-10 65.5 11.9 178 15-214 78-263 (341)
292 cd08246 crotonyl_coA_red croto 98.2 1.9E-05 4E-10 67.5 11.4 179 14-213 101-315 (393)
293 cd08284 FDH_like_2 Glutathione 98.2 2.3E-05 4.9E-10 65.6 11.7 184 14-214 73-267 (344)
294 cd05284 arabinose_DH_like D-ar 98.2 9.1E-06 2E-10 67.8 9.2 178 14-213 77-266 (340)
295 cd08260 Zn_ADH6 Alcohol dehydr 98.2 1.3E-05 2.8E-10 67.1 10.1 180 14-213 74-264 (345)
296 PF01739 CheR: CheR methyltran 98.2 1.5E-06 3.2E-11 66.7 3.9 100 108-210 31-172 (196)
297 PRK10742 putative methyltransf 98.2 1.2E-05 2.5E-10 63.4 8.7 88 100-192 78-175 (250)
298 cd08242 MDR_like Medium chain 98.2 8.7E-05 1.9E-09 61.4 14.4 169 16-213 69-245 (319)
299 KOG3115 Methyltransferase-like 98.2 1.2E-05 2.7E-10 60.7 8.2 118 108-228 60-198 (249)
300 cd08263 Zn_ADH10 Alcohol dehyd 98.2 1.3E-05 2.9E-10 67.8 9.4 103 105-213 184-287 (367)
301 PRK05396 tdh L-threonine 3-deh 98.2 2.2E-05 4.9E-10 65.6 10.6 181 14-214 77-264 (341)
302 COG3897 Predicted methyltransf 98.2 6.7E-06 1.5E-10 61.8 6.4 101 106-217 77-183 (218)
303 cd08240 6_hydroxyhexanoate_dh_ 98.1 1.9E-05 4.2E-10 66.2 9.5 101 106-213 173-274 (350)
304 PF02005 TRM: N2,N2-dimethylgu 98.1 1.3E-05 2.8E-10 67.7 8.1 109 108-218 49-159 (377)
305 COG0286 HsdM Type I restrictio 98.1 4.7E-05 1E-09 66.7 11.7 127 89-215 166-328 (489)
306 PRK09422 ethanol-active dehydr 98.1 4.4E-05 9.6E-10 63.6 11.2 105 101-213 155-261 (338)
307 cd08266 Zn_ADH_like1 Alcohol d 98.1 5.4E-05 1.2E-09 62.8 10.8 177 15-213 78-265 (342)
308 KOG2671 Putative RNA methylase 98.0 9.6E-06 2.1E-10 66.0 5.6 112 100-216 200-357 (421)
309 TIGR03439 methyl_EasF probable 98.0 6.7E-05 1.5E-09 61.9 10.7 108 106-213 74-197 (319)
310 TIGR01444 fkbM_fam methyltrans 98.0 3.4E-05 7.3E-10 56.2 7.7 58 111-170 1-58 (143)
311 cd08245 CAD Cinnamyl alcohol d 98.0 0.00013 2.8E-09 60.7 12.1 100 102-213 156-256 (330)
312 cd05283 CAD1 Cinnamyl alcohol 98.0 0.00018 3.9E-09 60.1 12.8 101 102-214 163-264 (337)
313 COG4798 Predicted methyltransf 98.0 3E-05 6.5E-10 58.3 7.0 105 100-213 40-166 (238)
314 KOG1197 Predicted quinone oxid 98.0 6.3E-05 1.4E-09 59.0 9.1 105 101-213 139-245 (336)
315 PRK09424 pntA NAD(P) transhydr 98.0 0.00012 2.6E-09 64.1 11.7 103 106-214 162-286 (509)
316 cd08236 sugar_DH NAD(P)-depend 98.0 0.00011 2.3E-09 61.5 11.1 105 101-213 152-258 (343)
317 cd08264 Zn_ADH_like2 Alcohol d 98.0 7.8E-05 1.7E-09 61.8 10.0 171 14-214 74-254 (325)
318 KOG1709 Guanidinoacetate methy 97.9 0.00011 2.4E-09 56.2 9.6 100 106-212 99-205 (271)
319 PRK13771 putative alcohol dehy 97.9 0.00011 2.5E-09 61.0 10.8 173 14-214 74-256 (334)
320 cd08262 Zn_ADH8 Alcohol dehydr 97.9 0.00022 4.8E-09 59.5 12.3 106 102-213 155-264 (341)
321 KOG2940 Predicted methyltransf 97.9 2E-05 4.4E-10 60.7 5.2 95 108-210 72-171 (325)
322 cd08298 CAD2 Cinnamyl alcohol 97.9 0.00018 4E-09 59.7 11.3 95 102-213 161-256 (329)
323 KOG1269 SAM-dependent methyltr 97.9 3.7E-05 8E-10 64.4 6.7 105 104-213 106-215 (364)
324 COG2384 Predicted SAM-dependen 97.9 0.00033 7.1E-09 54.0 11.2 116 107-228 15-133 (226)
325 PF03141 Methyltransf_29: Puta 97.9 2.2E-05 4.7E-10 67.3 5.1 94 110-217 119-223 (506)
326 PF06962 rRNA_methylase: Putat 97.9 4.7E-05 1E-09 54.7 6.1 76 135-213 1-92 (140)
327 cd08234 threonine_DH_like L-th 97.8 0.00032 7E-09 58.3 11.4 104 102-213 153-257 (334)
328 KOG3178 Hydroxyindole-O-methyl 97.8 0.00013 2.8E-09 60.0 8.4 92 109-214 178-276 (342)
329 PRK11760 putative 23S rRNA C24 97.8 0.00013 2.9E-09 60.0 8.3 87 106-206 209-296 (357)
330 PF04989 CmcI: Cephalosporin h 97.8 6.6E-05 1.4E-09 57.6 6.1 109 108-218 32-152 (206)
331 TIGR01751 crot-CoA-red crotony 97.7 0.00098 2.1E-08 57.1 13.6 180 14-214 97-311 (398)
332 PF00107 ADH_zinc_N: Zinc-bind 97.7 9.9E-06 2.2E-10 57.9 1.1 91 118-216 1-92 (130)
333 COG1189 Predicted rRNA methyla 97.7 0.00024 5.3E-09 55.3 8.5 105 100-212 70-177 (245)
334 PLN03154 putative allyl alcoho 97.7 0.00015 3.2E-09 61.0 7.9 104 103-214 153-259 (348)
335 cd08259 Zn_ADH5 Alcohol dehydr 97.7 0.00036 7.7E-09 57.8 9.8 173 14-213 74-256 (332)
336 TIGR02825 B4_12hDH leukotriene 97.7 0.00022 4.7E-09 59.2 8.5 104 102-214 132-238 (325)
337 KOG3201 Uncharacterized conser 97.7 3.6E-05 7.7E-10 56.1 3.0 125 105-231 26-160 (201)
338 PF05971 Methyltransf_10: Prot 97.7 0.00043 9.2E-09 56.4 9.4 80 109-190 103-186 (299)
339 cd08235 iditol_2_DH_like L-idi 97.7 0.00064 1.4E-08 56.8 10.9 105 101-213 158-265 (343)
340 PF11968 DUF3321: Putative met 97.6 0.00012 2.7E-09 56.3 5.6 105 110-234 53-178 (219)
341 cd08297 CAD3 Cinnamyl alcohol 97.6 0.0018 3.8E-08 54.1 12.9 104 102-213 159-265 (341)
342 cd08294 leukotriene_B4_DH_like 97.6 0.00037 8E-09 57.8 8.0 103 102-213 137-241 (329)
343 COG1867 TRM1 N2,N2-dimethylgua 97.5 0.00054 1.2E-08 56.7 8.4 102 109-214 53-155 (380)
344 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.5 9.1E-05 2E-09 59.1 3.7 104 107-213 55-199 (256)
345 KOG1253 tRNA methyltransferase 97.5 0.00014 3.1E-09 62.1 4.9 111 106-216 107-219 (525)
346 cd08293 PTGR2 Prostaglandin re 97.5 0.00074 1.6E-08 56.5 8.6 104 103-213 147-254 (345)
347 cd08274 MDR9 Medium chain dehy 97.4 0.0028 6E-08 53.1 12.0 102 101-213 170-273 (350)
348 KOG1227 Putative methyltransfe 97.4 6.3E-05 1.4E-09 60.2 1.9 96 108-208 194-290 (351)
349 cd08258 Zn_ADH4 Alcohol dehydr 97.4 0.0017 3.7E-08 53.5 10.5 106 102-215 158-266 (306)
350 COG0500 SmtA SAM-dependent met 97.4 0.004 8.6E-08 45.3 11.5 100 112-215 52-157 (257)
351 cd08295 double_bond_reductase_ 97.4 0.00078 1.7E-08 56.3 8.3 104 102-213 145-251 (338)
352 KOG4058 Uncharacterized conser 97.3 0.00094 2E-08 48.1 6.6 107 99-210 63-169 (199)
353 PF07942 N2227: N2227-like pro 97.3 0.0026 5.7E-08 51.2 9.8 124 107-233 55-238 (270)
354 PHA01634 hypothetical protein 97.3 0.0027 5.9E-08 44.6 8.2 74 108-190 28-101 (156)
355 PF07091 FmrO: Ribosomal RNA m 97.3 0.0012 2.7E-08 52.0 7.2 75 106-187 103-177 (251)
356 cd00401 AdoHcyase S-adenosyl-L 97.2 0.0022 4.8E-08 54.9 9.0 90 107-215 200-291 (413)
357 COG5459 Predicted rRNA methyla 97.2 0.00066 1.4E-08 55.8 5.1 114 108-224 113-236 (484)
358 COG1568 Predicted methyltransf 97.2 0.0032 6.9E-08 50.2 8.5 116 107-227 151-273 (354)
359 PRK01747 mnmC bifunctional tRN 97.1 0.0046 9.9E-08 56.6 10.7 119 107-231 56-221 (662)
360 PF04672 Methyltransf_19: S-ad 97.1 0.0054 1.2E-07 49.1 9.1 107 108-215 68-192 (267)
361 KOG2360 Proliferation-associat 97.1 0.0018 3.9E-08 53.9 6.5 97 92-190 197-293 (413)
362 TIGR00561 pntA NAD(P) transhyd 97.0 0.0073 1.6E-07 53.0 10.0 98 107-212 162-283 (511)
363 cd08276 MDR7 Medium chain dehy 97.0 0.021 4.5E-07 47.3 12.4 102 104-214 156-260 (336)
364 KOG1501 Arginine N-methyltrans 97.0 0.0023 5.1E-08 54.1 6.4 96 111-210 69-172 (636)
365 PF04445 SAM_MT: Putative SAM- 96.9 0.011 2.3E-07 46.6 9.4 85 100-189 65-159 (234)
366 cd08255 2-desacetyl-2-hydroxye 96.9 0.021 4.7E-07 46.0 11.6 100 101-213 90-190 (277)
367 PF04189 Gcd10p: Gcd10p family 96.9 0.049 1.1E-06 44.6 13.2 55 15-69 3-58 (299)
368 cd00315 Cyt_C5_DNA_methylase C 96.9 0.015 3.2E-07 47.3 10.2 110 111-230 2-136 (275)
369 KOG3987 Uncharacterized conser 96.8 0.00022 4.8E-09 54.3 -0.5 85 109-210 113-204 (288)
370 KOG0822 Protein kinase inhibit 96.8 0.0039 8.4E-08 54.0 6.7 98 109-210 368-475 (649)
371 COG2130 Putative NADP-dependen 96.7 0.013 2.8E-07 47.5 8.2 107 100-214 142-250 (340)
372 KOG0025 Zn2+-binding dehydroge 96.6 0.039 8.5E-07 44.5 10.3 109 100-214 152-264 (354)
373 PRK11524 putative methyltransf 96.6 0.0077 1.7E-07 49.2 6.7 47 106-155 206-252 (284)
374 KOG1099 SAM-dependent methyltr 96.6 0.0061 1.3E-07 47.3 5.5 113 109-233 42-183 (294)
375 cd08291 ETR_like_1 2-enoyl thi 96.5 0.014 2.9E-07 48.5 8.0 99 108-214 142-243 (324)
376 PF07279 DUF1442: Protein of u 96.3 0.11 2.4E-06 40.2 11.0 114 93-210 26-145 (218)
377 PF01555 N6_N4_Mtase: DNA meth 96.3 0.0083 1.8E-07 46.9 5.3 43 106-151 189-231 (231)
378 cd05288 PGDH Prostaglandin deh 96.3 0.024 5.2E-07 46.9 8.2 102 104-213 141-244 (329)
379 KOG2352 Predicted spermine/spe 96.3 0.0057 1.2E-07 52.6 4.3 106 108-215 295-418 (482)
380 KOG1331 Predicted methyltransf 96.3 0.0053 1.2E-07 49.2 3.8 97 107-218 44-148 (293)
381 PRK13699 putative methylase; P 96.2 0.019 4.2E-07 45.3 6.9 48 106-156 161-208 (227)
382 PF05711 TylF: Macrocin-O-meth 96.2 0.018 3.8E-07 45.9 6.3 120 107-227 73-226 (248)
383 cd08292 ETR_like_2 2-enoyl thi 96.2 0.029 6.2E-07 46.3 8.0 104 101-213 132-238 (324)
384 KOG2352 Predicted spermine/spe 96.2 0.042 9E-07 47.5 8.9 100 107-213 46-161 (482)
385 cd08269 Zn_ADH9 Alcohol dehydr 96.1 0.033 7.2E-07 45.6 8.2 104 102-213 123-229 (312)
386 cd05286 QOR2 Quinone oxidoredu 96.1 0.034 7.5E-07 45.3 8.3 103 103-213 131-235 (320)
387 KOG1198 Zinc-binding oxidoredu 96.1 0.021 4.5E-07 48.0 6.8 81 105-192 154-236 (347)
388 KOG2793 Putative N2,N2-dimethy 96.0 0.16 3.4E-06 40.4 11.1 106 108-216 86-202 (248)
389 PF11599 AviRa: RRNA methyltra 96.0 0.019 4.1E-07 44.3 5.7 105 107-211 50-212 (246)
390 KOG1098 Putative SAM-dependent 96.0 0.0053 1.2E-07 54.1 3.0 91 106-210 42-155 (780)
391 TIGR00936 ahcY adenosylhomocys 96.0 0.046 1E-06 46.8 8.5 90 107-215 193-284 (406)
392 cd08243 quinone_oxidoreductase 96.0 0.061 1.3E-06 44.1 9.2 100 104-214 138-239 (320)
393 cd08244 MDR_enoyl_red Possible 95.8 0.062 1.3E-06 44.3 8.5 106 101-214 135-242 (324)
394 PRK05476 S-adenosyl-L-homocyst 95.8 0.058 1.3E-06 46.5 8.2 90 107-215 210-301 (425)
395 PF02254 TrkA_N: TrkA-N domain 95.8 0.089 1.9E-06 36.5 7.9 97 112-218 1-101 (116)
396 TIGR00497 hsdM type I restrict 95.7 0.2 4.3E-06 44.5 11.7 122 92-215 198-357 (501)
397 cd08289 MDR_yhfp_like Yhfp put 95.7 0.068 1.5E-06 44.1 8.4 97 108-214 146-244 (326)
398 PLN02494 adenosylhomocysteinas 95.7 0.058 1.3E-06 46.9 7.9 90 107-214 252-342 (477)
399 PRK10754 quinone oxidoreductas 95.7 0.045 9.8E-07 45.3 7.2 103 103-213 135-239 (327)
400 cd08250 Mgc45594_like Mgc45594 95.6 0.072 1.6E-06 44.1 8.3 101 104-213 135-237 (329)
401 PRK07340 ornithine cyclodeamin 95.6 0.081 1.8E-06 43.7 8.3 103 100-215 116-219 (304)
402 cd08241 QOR1 Quinone oxidoredu 95.6 0.081 1.7E-06 43.2 8.2 103 103-213 134-238 (323)
403 PTZ00354 alcohol dehydrogenase 95.6 0.082 1.8E-06 43.7 8.3 102 104-213 136-240 (334)
404 cd08252 AL_MDR Arginate lyase 95.5 0.11 2.3E-06 43.2 8.8 97 109-213 150-248 (336)
405 cd05289 MDR_like_2 alcohol deh 95.5 0.19 4.2E-06 40.7 10.2 96 105-213 141-238 (309)
406 TIGR02823 oxido_YhdH putative 95.4 0.11 2.5E-06 42.7 8.6 99 105-214 141-242 (323)
407 smart00829 PKS_ER Enoylreducta 95.3 0.13 2.8E-06 41.2 8.4 104 102-213 98-205 (288)
408 cd05282 ETR_like 2-enoyl thioe 95.2 0.11 2.4E-06 42.8 7.8 101 104-213 134-237 (323)
409 PF00145 DNA_methylase: C-5 cy 95.2 0.061 1.3E-06 44.6 6.3 109 111-230 2-135 (335)
410 PRK08306 dipicolinate synthase 95.2 0.15 3.2E-06 42.0 8.4 89 108-213 151-241 (296)
411 cd08249 enoyl_reductase_like e 95.1 0.06 1.3E-06 45.0 6.2 98 107-213 153-254 (339)
412 cd08270 MDR4 Medium chain dehy 95.1 0.55 1.2E-05 38.2 11.8 94 103-213 127-222 (305)
413 KOG2798 Putative trehalase [Ca 95.1 0.22 4.9E-06 40.7 8.9 36 180-215 258-298 (369)
414 KOG3924 Putative protein methy 95.1 0.09 1.9E-06 44.3 6.9 120 94-214 178-309 (419)
415 PRK08618 ornithine cyclodeamin 95.1 0.21 4.5E-06 41.7 9.1 103 100-215 118-223 (325)
416 TIGR02371 ala_DH_arch alanine 95.0 0.17 3.8E-06 42.2 8.6 104 100-214 119-223 (325)
417 cd05195 enoyl_red enoyl reduct 95.0 0.15 3.3E-06 40.8 8.1 105 103-213 103-209 (293)
418 TIGR02817 adh_fam_1 zinc-bindi 95.0 0.19 4.2E-06 41.6 8.8 97 109-213 149-247 (336)
419 cd00755 YgdL_like Family of ac 94.9 0.33 7.1E-06 38.4 9.4 82 109-191 11-112 (231)
420 PRK07502 cyclohexadienyl dehyd 94.9 0.36 7.9E-06 39.8 10.2 92 110-214 7-101 (307)
421 COG0686 Ald Alanine dehydrogen 94.9 0.13 2.9E-06 42.0 7.2 94 109-212 168-267 (371)
422 PF02737 3HCDH_N: 3-hydroxyacy 94.9 0.29 6.3E-06 37.1 8.8 94 111-214 1-115 (180)
423 PF10354 DUF2431: Domain of un 94.9 0.33 7.2E-06 36.3 8.9 100 114-213 2-125 (166)
424 cd08267 MDR1 Medium chain dehy 94.9 0.44 9.4E-06 39.0 10.6 99 105-213 140-240 (319)
425 PRK06141 ornithine cyclodeamin 94.9 0.22 4.8E-06 41.3 8.7 103 100-213 116-219 (314)
426 COG0287 TyrA Prephenate dehydr 94.7 0.47 1E-05 38.7 9.9 97 110-218 4-103 (279)
427 PRK06823 ornithine cyclodeamin 94.7 0.26 5.7E-06 40.9 8.6 105 100-215 119-224 (315)
428 PRK13699 putative methylase; P 94.6 0.056 1.2E-06 42.7 4.3 66 163-232 3-91 (227)
429 cd08290 ETR 2-enoyl thioester 94.6 0.15 3.2E-06 42.4 7.2 101 104-213 142-251 (341)
430 COG3129 Predicted SAM-dependen 94.6 0.072 1.6E-06 41.7 4.7 83 107-190 77-162 (292)
431 PTZ00357 methyltransferase; Pr 94.5 0.29 6.4E-06 44.4 8.9 98 111-208 703-830 (1072)
432 cd08273 MDR8 Medium chain dehy 94.5 0.51 1.1E-05 38.9 10.2 97 104-213 135-233 (331)
433 KOG2078 tRNA modification enzy 94.5 0.025 5.4E-07 47.9 2.2 62 106-170 247-309 (495)
434 TIGR00518 alaDH alanine dehydr 94.5 0.2 4.4E-06 42.6 7.7 96 108-213 166-267 (370)
435 PF10237 N6-adenineMlase: Prob 94.5 0.75 1.6E-05 34.2 9.8 95 107-214 24-124 (162)
436 PTZ00075 Adenosylhomocysteinas 94.4 0.22 4.8E-06 43.5 7.9 90 107-215 252-343 (476)
437 cd05280 MDR_yhdh_yhfp Yhdh and 94.4 0.24 5.2E-06 40.8 7.9 95 109-214 147-244 (325)
438 PRK10669 putative cation:proto 94.4 0.57 1.2E-05 42.2 10.7 97 110-216 418-518 (558)
439 TIGR02356 adenyl_thiF thiazole 94.3 0.2 4.3E-06 38.8 6.8 81 108-190 20-120 (202)
440 cd08253 zeta_crystallin Zeta-c 94.2 0.36 7.7E-06 39.4 8.6 102 104-213 140-243 (325)
441 cd08248 RTN4I1 Human Reticulon 94.2 0.27 5.9E-06 41.0 7.9 94 108-213 162-257 (350)
442 cd08268 MDR2 Medium chain dehy 94.2 0.3 6.5E-06 40.0 8.0 103 103-213 139-243 (328)
443 PF01408 GFO_IDH_MocA: Oxidore 94.1 0.33 7.1E-06 33.7 7.1 105 111-228 2-111 (120)
444 PRK05786 fabG 3-ketoacyl-(acyl 94.1 1 2.2E-05 35.2 10.7 104 108-215 4-137 (238)
445 cd08251 polyketide_synthase po 94.1 0.37 8E-06 39.0 8.4 104 102-213 114-219 (303)
446 PRK07589 ornithine cyclodeamin 94.1 0.33 7.2E-06 40.8 8.1 103 100-214 120-226 (346)
447 cd01065 NAD_bind_Shikimate_DH 94.1 1.2 2.7E-05 32.4 10.4 110 107-228 17-130 (155)
448 COG0270 Dcm Site-specific DNA 94.0 0.47 1E-05 39.6 8.8 113 110-231 4-141 (328)
449 KOG1196 Predicted NAD-dependen 93.9 0.39 8.5E-06 39.1 7.8 107 101-215 146-255 (343)
450 PRK11524 putative methyltransf 93.8 0.12 2.6E-06 42.3 4.9 66 162-231 9-97 (284)
451 PF03141 Methyltransf_29: Puta 93.8 0.11 2.4E-06 45.2 4.8 104 110-231 367-485 (506)
452 cd01487 E1_ThiF_like E1_ThiF_l 93.7 0.54 1.2E-05 35.4 8.0 79 111-191 1-98 (174)
453 PRK03562 glutathione-regulated 93.7 1.1 2.3E-05 41.0 11.2 98 109-216 400-501 (621)
454 PF05430 Methyltransf_30: S-ad 93.6 0.026 5.7E-07 40.0 0.7 64 162-231 33-105 (124)
455 PF02558 ApbA: Ketopantoate re 93.6 0.16 3.6E-06 37.0 4.9 103 112-225 1-113 (151)
456 KOG0821 Predicted ribosomal RN 93.5 0.22 4.7E-06 38.8 5.4 69 99-171 41-109 (326)
457 COG1748 LYS9 Saccharopine dehy 93.5 0.3 6.5E-06 41.6 6.8 78 110-193 2-80 (389)
458 COG4301 Uncharacterized conser 93.5 1.6 3.4E-05 34.8 10.1 110 104-214 74-194 (321)
459 PRK06940 short chain dehydroge 93.4 0.61 1.3E-05 37.7 8.4 100 110-213 3-125 (275)
460 PRK12475 thiamine/molybdopteri 93.3 0.49 1.1E-05 39.7 7.9 81 108-190 23-125 (338)
461 PRK03659 glutathione-regulated 93.2 1.2 2.6E-05 40.5 10.7 98 110-217 401-502 (601)
462 cd08247 AST1_like AST1 is a cy 93.1 0.64 1.4E-05 38.9 8.4 103 105-213 148-259 (352)
463 cd05276 p53_inducible_oxidored 93.1 0.59 1.3E-05 38.0 8.0 102 104-213 135-238 (323)
464 PRK09260 3-hydroxybutyryl-CoA 92.9 0.59 1.3E-05 38.2 7.6 96 110-214 2-118 (288)
465 cd00757 ThiF_MoeB_HesA_family 92.7 0.46 9.9E-06 37.5 6.6 82 109-192 21-122 (228)
466 PRK08324 short chain dehydroge 92.7 0.74 1.6E-05 42.5 8.8 104 107-214 420-558 (681)
467 PRK06522 2-dehydropantoate 2-r 92.7 2 4.4E-05 35.1 10.7 96 111-216 2-103 (304)
468 cd08272 MDR6 Medium chain dehy 92.7 0.9 2E-05 37.1 8.6 101 102-213 138-241 (326)
469 PF02636 Methyltransf_28: Puta 92.7 0.25 5.3E-06 39.6 5.0 48 108-155 18-72 (252)
470 PRK05708 2-dehydropantoate 2-r 92.6 1.2 2.5E-05 36.9 9.1 103 110-222 3-113 (305)
471 PF00899 ThiF: ThiF family; I 92.6 0.48 1E-05 33.9 6.0 101 109-212 2-122 (135)
472 PF02423 OCD_Mu_crystall: Orni 92.6 0.69 1.5E-05 38.4 7.7 104 100-215 119-226 (313)
473 PRK07417 arogenate dehydrogena 92.5 2.1 4.6E-05 34.8 10.4 86 111-213 2-91 (279)
474 COG1565 Uncharacterized conser 92.5 0.71 1.5E-05 38.7 7.5 57 100-156 69-132 (370)
475 COG2961 ComJ Protein involved 92.4 2.9 6.3E-05 33.3 10.3 117 106-231 87-216 (279)
476 TIGR02824 quinone_pig3 putativ 92.4 0.95 2.1E-05 36.9 8.4 103 103-213 134-238 (325)
477 PRK08507 prephenate dehydrogen 92.4 1.9 4E-05 35.0 9.8 91 111-218 2-96 (275)
478 TIGR00675 dcm DNA-methyltransf 92.3 0.26 5.7E-06 40.9 4.9 68 112-190 1-68 (315)
479 cd08288 MDR_yhdh Yhdh putative 92.2 1.8 3.8E-05 35.6 9.8 99 104-213 141-242 (324)
480 PRK15001 SAM-dependent 23S rib 92.2 2.5 5.3E-05 36.1 10.6 105 97-213 32-142 (378)
481 PRK07066 3-hydroxybutyryl-CoA 92.2 1.2 2.6E-05 37.1 8.6 106 110-226 8-131 (321)
482 KOG1205 Predicted dehydrogenas 92.1 2.8 6E-05 34.2 10.3 121 108-228 11-179 (282)
483 PRK07530 3-hydroxybutyryl-CoA 92.1 2.7 5.8E-05 34.4 10.5 92 110-211 5-117 (292)
484 PRK08293 3-hydroxybutyryl-CoA 92.1 1.6 3.5E-05 35.6 9.2 94 110-212 4-119 (287)
485 PLN03209 translocon at the inn 92.0 1.3 2.8E-05 39.8 9.0 86 103-190 74-168 (576)
486 KOG2651 rRNA adenine N-6-methy 92.0 0.5 1.1E-05 39.8 6.0 45 105-151 150-194 (476)
487 PRK08223 hypothetical protein; 92.0 1.3 2.8E-05 36.2 8.3 81 108-191 26-126 (287)
488 PRK08339 short chain dehydroge 91.8 1.4 3.1E-05 35.3 8.6 80 108-189 7-93 (263)
489 COG1893 ApbA Ketopantoate redu 91.8 3.4 7.4E-05 34.2 10.8 104 110-224 1-112 (307)
490 PF05050 Methyltransf_21: Meth 91.8 0.58 1.2E-05 34.4 5.8 43 114-156 1-48 (167)
491 PRK15116 sulfur acceptor prote 91.8 1.5 3.3E-05 35.5 8.5 34 108-142 29-63 (268)
492 cd05292 LDH_2 A subgroup of L- 91.8 5.1 0.00011 33.2 11.9 99 111-216 2-119 (308)
493 PF00670 AdoHcyase_NAD: S-aden 91.8 2.5 5.4E-05 31.4 8.9 91 106-214 20-111 (162)
494 PRK05867 short chain dehydroge 91.7 1.5 3.3E-05 34.7 8.6 79 108-189 8-94 (253)
495 PF02153 PDH: Prephenate dehyd 91.7 0.93 2E-05 36.5 7.3 75 131-219 9-85 (258)
496 PRK06249 2-dehydropantoate 2-r 91.7 1.5 3.3E-05 36.3 8.7 104 109-223 5-116 (313)
497 PF02826 2-Hacid_dh_C: D-isome 91.6 0.41 8.8E-06 36.2 4.9 104 107-228 34-143 (178)
498 PRK05562 precorrin-2 dehydroge 91.6 1.5 3.2E-05 34.5 8.0 70 108-192 24-96 (223)
499 PRK05690 molybdopterin biosynt 91.6 1.2 2.5E-05 35.6 7.7 81 108-190 31-131 (245)
500 cd05293 LDH_1 A subgroup of L- 91.5 6.2 0.00013 32.8 12.1 39 108-146 2-41 (312)
No 1
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-38 Score=242.02 Aligned_cols=217 Identities=38% Similarity=0.650 Sum_probs=205.2
Q ss_pred CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcCCccccccc
Q 026506 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYI 94 (237)
Q Consensus 15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (237)
+||+||+|++...+.+.+...+.++..++++.|.+++++++|+++|..+.++.|.-++++.|.+.++...+++..++++|
T Consensus 1 ~~~~gd~vlL~~~~~~~~lv~~~~~~~~~t~~G~i~~~~vigk~~G~~i~s~~G~~f~vl~p~~~d~~~~~~R~tQiIyP 80 (256)
T COG2519 1 PFKEGDPVLLTDERGRRYLVRLTPGEKFHTDLGIIPHDEVIGKPYGEVIKSHLGVKFYVLKPTPEDYLLSMKRRTQIIYP 80 (256)
T ss_pred CCCCCCeEEEEecCCcEEEEeccCCcccccceeeechhhhcCCCCCceEEeeCCceEEEeCCCHHHHHHhCcCCCceecC
Confidence 58999999999999999998888899999999999999999999999999999988899999999999999999999999
Q ss_pred ccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC
Q 026506 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (237)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 174 (237)
.++++++..+++.||++|+|.|.|+|.++..++...++.++|+++|+.+++++.|++|++..++.+++.+..+|+.+...
T Consensus 81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 99999999999999999999999999999999999999899999999999999999999999998889999999985333
Q ss_pred CCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES 235 (237)
Q Consensus 175 ~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~ 235 (237)
+ ..||+||+|.|+||.+++.+.+.|+|||.+++|+|+.+|+++..+.|++ ||.+++.
T Consensus 161 ~----~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 161 E----EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred c----cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 3 4799999999999999999999999999999999999999999999999 7988764
No 2
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-36 Score=232.19 Aligned_cols=229 Identities=60% Similarity=0.989 Sum_probs=215.8
Q ss_pred CCCCcccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhc
Q 026506 6 PTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVL 85 (237)
Q Consensus 6 ~~~~~~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (237)
|....+|...+++||.|+++...+.|+.+.+..+..+++++|.+++.+++|+++|..+....|+|+|+++|++++|...+
T Consensus 3 ~~~f~syk~~ie~GDlvi~~~~~~~m~p~~v~r~~~~~~~yGa~~h~~iIGK~~G~~v~sskG~~vylL~PTpELWTl~L 82 (314)
T KOG2915|consen 3 PMSFTSYKRRIEEGDLVIAYVGRGEMKPVKVFREGTFQTRYGALPHSDIIGKPYGSKVASSKGKFVYLLQPTPELWTLAL 82 (314)
T ss_pred CccccChhhhcccCCEEEEEEccCceEEEEEeccceeeccccccchhheecCCccceeeecCCcEEEEecCChHHhhhhc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506 86 SHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (237)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~ 165 (237)
+++.+++|+.++++++..++++||.+|+|-|+|+|.++.++++..+|.++++.+|..+.+.+.|++.+...++.+++++.
T Consensus 83 phRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~ 162 (314)
T KOG2915|consen 83 PHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVT 162 (314)
T ss_pred cCcceEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCC-EEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506 166 VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDG-ILCSFSPCIEQVQRSCESLRL-NFTGKES 235 (237)
Q Consensus 166 ~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG-~l~~~~~~~~~~~~~~~~l~~-~f~~v~~ 235 (237)
+.|+....+... ...+|.||+|.|.||.++..+.+.||.+| +++-++||++|+++.++.|+. +|.+++.
T Consensus 163 hrDVc~~GF~~k-s~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 163 HRDVCGSGFLIK-SLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIET 233 (314)
T ss_pred EeecccCCcccc-ccccceEEEcCCChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEE
Confidence 999998766642 26799999999999999999999999776 999999999999999999999 8987654
No 3
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.97 E-value=7.9e-31 Score=205.97 Aligned_cols=167 Identities=59% Similarity=1.022 Sum_probs=136.1
Q ss_pred cEEEEECCCHHHHhhhcCCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026506 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAAS 148 (237)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~ 148 (237)
+|.|++.|++++|...+++..+++||.+++.++..+++.||++|+|.|.|+|.++..+++.+++.++|+.+|.++++.+.
T Consensus 1 g~v~vl~Pt~e~~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~ 80 (247)
T PF08704_consen 1 GFVYVLRPTPELWTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEK 80 (247)
T ss_dssp ---------HHHHHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHH
T ss_pred CCccccchhHHHHHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcc-cCCCEEEEEeCCHHHHHHHHHHHH
Q 026506 149 AREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKML-KQDGILCSFSPCIEQVQRSCESLR 227 (237)
Q Consensus 149 a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L-~~gG~l~~~~~~~~~~~~~~~~l~ 227 (237)
|+++++.+++.+++.+.+.|+.+..+.......+|.||+|.|+||.++..+.+.| ++||++++|+||++|+.++++.|+
T Consensus 81 A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~ 160 (247)
T PF08704_consen 81 ARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR 160 (247)
T ss_dssp HHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH
Confidence 9999999999877999999997655643333679999999999999999999999 999999999999999999999999
Q ss_pred h-cCccccc
Q 026506 228 L-NFTGKES 235 (237)
Q Consensus 228 ~-~f~~v~~ 235 (237)
+ +|.++++
T Consensus 161 ~~gf~~i~~ 169 (247)
T PF08704_consen 161 EHGFTDIET 169 (247)
T ss_dssp HTTEEEEEE
T ss_pred HCCCeeeEE
Confidence 9 8988765
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.80 E-value=5.4e-19 Score=137.95 Aligned_cols=133 Identities=28% Similarity=0.392 Sum_probs=112.7
Q ss_pred ECCCHHHHhhhcCCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026506 74 LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF 153 (237)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 153 (237)
+.+.+|.++..++-+.+..|... ++......+|.+|||+|||||-++..+++..+ .++|+++|+|+.|++.++++.
T Consensus 20 ia~~YD~~n~~~S~g~~~~Wr~~---~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~ 95 (238)
T COG2226 20 VAKKYDLMNDLMSFGLHRLWRRA---LISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKL 95 (238)
T ss_pred hHHHHHhhcccccCcchHHHHHH---HHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHh
Confidence 44455666656666666666655 66666777999999999999999999999986 789999999999999999999
Q ss_pred HHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 154 ERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 154 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
...+..+ ++++.+|+.+.++++ .+||+|.+ +.++...+|+++.|+|||||+++++..
T Consensus 96 ~~~~~~~-i~fv~~dAe~LPf~D---~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 96 KKKGVQN-VEFVVGDAENLPFPD---NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred hccCccc-eEEEEechhhCCCCC---CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 8888777 999999999988888 89999975 567888899999999999999987753
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.78 E-value=1.1e-18 Score=137.33 Aligned_cols=134 Identities=28% Similarity=0.398 Sum_probs=84.2
Q ss_pred EECCCHHHHhhhcCCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 026506 73 LLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARED 152 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~ 152 (237)
.+.+.+|..+..++.+....|... +++.+...+|.+|||+|||+|.++..+++..++.++|+++|++++|++.|+++
T Consensus 15 ~ia~~YD~~n~~ls~g~~~~wr~~---~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k 91 (233)
T PF01209_consen 15 RIAPRYDRMNDLLSFGQDRRWRRK---LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKK 91 (233)
T ss_dssp ----------------------SH---HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHH
T ss_pred HHHHHhCCCccccCCcHHHHHHHH---HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHH
Confidence 345555655555554555555553 56667788999999999999999999998877778999999999999999999
Q ss_pred HHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEe
Q 026506 153 FERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 153 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
....+..+ +++.++|+.+.++++ +.||+|++ +.++....+++++++|||||+++++.
T Consensus 92 ~~~~~~~~-i~~v~~da~~lp~~d---~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 92 LKREGLQN-IEFVQGDAEDLPFPD---NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp HHHTT--S-EEEEE-BTTB--S-T---T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhCCCC-eeEEEcCHHHhcCCC---CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 98877765 999999999877776 88999986 45677789999999999999998664
No 6
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.77 E-value=4.6e-17 Score=120.97 Aligned_cols=127 Identities=24% Similarity=0.312 Sum_probs=111.6
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
..+..+.+++++.++|+|||+|..++.++ ..++.++++++|.++++++..++|.++++.++ +++..+|+.+ .++..
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~-~L~~~- 100 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPE-ALPDL- 100 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchH-hhcCC-
Confidence 46788899999999999999999999999 56788999999999999999999999999777 9999999874 33321
Q ss_pred CCCCCEEEEeCC-ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506 179 SGLADSIFLDLP-QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF 230 (237)
Q Consensus 179 ~~~~D~v~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f 230 (237)
..+|.||+... .....++.+...|+|||++++.....+.....++.+++ +|
T Consensus 101 -~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 101 -PSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred -CCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 36999999765 33468999999999999999999999999999999999 76
No 7
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.76 E-value=6.9e-17 Score=124.88 Aligned_cols=140 Identities=23% Similarity=0.288 Sum_probs=111.8
Q ss_pred cccccHHH-HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 026506 92 LYIADISF-VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (237)
Q Consensus 92 ~~~~~~~~-~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 170 (237)
+....++. .+..+.+.++.+|||+|||+|.++..++...++..+++++|+++.+++.+++++..+++.+++.+..+|+.
T Consensus 23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 33333333 46778899999999999999999999988776667999999999999999999998885445888888886
Q ss_pred CCCCCCCCCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506 171 GQGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE 234 (237)
Q Consensus 171 ~~~~~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~ 234 (237)
+. ++. ..+.||.|+++.. .....++.+.+.|+|||++++.....++..+..+.+++ +| +++
T Consensus 103 ~~-l~~-~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~ 166 (198)
T PRK00377 103 EI-LFT-INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLE 166 (198)
T ss_pred hh-Hhh-cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeE
Confidence 41 111 1257999998543 45678999999999999999888888889999999988 77 444
No 8
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.8e-17 Score=122.29 Aligned_cols=122 Identities=33% Similarity=0.380 Sum_probs=104.0
Q ss_pred cCCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 026506 85 LSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (237)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~ 164 (237)
...+..+..|...+.+++.+.++++++|||||||+|+.+..+++.. .+|+++|..++..+.|+++++..|+.| +.+
T Consensus 49 i~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v 124 (209)
T COG2518 49 IGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTV 124 (209)
T ss_pred CCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEE
Confidence 3355566667788889999999999999999999999999999885 499999999999999999999999988 999
Q ss_pred EEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 165 ~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.++|.. ..++.. ..||.|+.....+. .-+.+.+.|++||++++-.-
T Consensus 125 ~~gDG~-~G~~~~--aPyD~I~Vtaaa~~-vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 125 RHGDGS-KGWPEE--APYDRIIVTAAAPE-VPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EECCcc-cCCCCC--CCcCEEEEeeccCC-CCHHHHHhcccCCEEEEEEc
Confidence 999998 566653 78999998765543 55778899999999986543
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=1.3e-16 Score=126.36 Aligned_cols=111 Identities=21% Similarity=0.361 Sum_probs=93.8
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
++..+.+.++.+|||+|||+|.++..++...++..+++++|+++++++.++++....+.++ +++..+|+.+..++.
T Consensus 37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~--- 112 (231)
T TIGR02752 37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELPFDD--- 112 (231)
T ss_pred HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEEEechhcCCCCC---
Confidence 6677788889999999999999999999887667899999999999999999988777655 899999987644444
Q ss_pred CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeC
Q 026506 180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+.||+|+++ .+++..+++++.+.|+|||.+++..+
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 689999864 45666789999999999999987653
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.72 E-value=2e-16 Score=127.22 Aligned_cols=111 Identities=22% Similarity=0.233 Sum_probs=89.7
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEccccCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER--TGVSSFVTVGVRDIQGQGFPDE 177 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~~~~~~ 177 (237)
++..+.+.++.+|||+|||+|.++..+++..++.++|+++|++++|++.|+++... .....++++..+|+.+.++++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~- 143 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD- 143 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC-
Confidence 44556778899999999999999988888776667999999999999999876532 122234899999998766655
Q ss_pred CCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEe
Q 026506 178 FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 178 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+.||+|++ +.+++..+++++.+.|||||++++..
T Consensus 144 --~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 144 --CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred --CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 78999976 45677789999999999999998764
No 11
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.71 E-value=7.5e-16 Score=118.08 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=105.9
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
++..+.+.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..++..+ +++..+|.. ..++
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~-~~~~---- 95 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAP-IELP---- 95 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCch-hhcC----
Confidence 5567778889999999999999999998874 55799999999999999999998887755 888888874 2232
Q ss_pred CCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506 180 GLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES 235 (237)
Q Consensus 180 ~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~ 235 (237)
+.||+|+++.. ....+++.+.+.|+|||++++......+..+..+.+++ +|..+++
T Consensus 96 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 96 GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 57999998653 34568899999999999998877667778888888888 7876653
No 12
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.71 E-value=3.5e-16 Score=122.02 Aligned_cols=121 Identities=26% Similarity=0.270 Sum_probs=99.7
Q ss_pred cccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506 88 RTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~ 167 (237)
+..+..|...+.+++.+++.++++|||+|||+|+++..+++..+..++|+++|+++++++.+++++...+..+ +++..+
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~g 134 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVG 134 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEEC
Confidence 3455667777778889999999999999999999999999887666799999999999999999999888766 999999
Q ss_pred cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 168 DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 168 d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
|......+. +.||+|+++...+ ...+.+.+.|||||++++..
T Consensus 135 d~~~~~~~~---~~fD~I~~~~~~~-~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 DGTLGYEEN---APYDRIYVTAAGP-DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcccCCCcC---CCcCEEEECCCcc-cchHHHHHhhCCCcEEEEEE
Confidence 987432222 6799999876543 36678889999999988654
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.71 E-value=1.2e-16 Score=112.19 Aligned_cols=101 Identities=27% Similarity=0.328 Sum_probs=83.1
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cCCCCCCCCCCCCCEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI-QGQGFPDEFSGLADSIF 186 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~~~D~v~ 186 (237)
|+.+|||+|||+|.++..+++.. +..+++++|+++++++.+++++...+...++++..+|+ ...... ..||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL----EPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS----SCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC----CCCCEEE
Confidence 67899999999999999999954 45889999999999999999997677767799999999 322222 5799999
Q ss_pred EeC-CC--------hhchHHHHHhcccCCCEEEEEe
Q 026506 187 LDL-PQ--------PWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 187 ~~~-~~--------~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+.. .. ..++++++.+.|+|||++++-.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 877 21 1246899999999999998643
No 14
>PRK04266 fibrillarin; Provisional
Probab=99.70 E-value=1.6e-15 Score=118.83 Aligned_cols=159 Identities=21% Similarity=0.208 Sum_probs=109.3
Q ss_pred CCCceEEeccCcEEEEECCCHHHHhhhcCCcccccccccHHHHHH---hcCCCCCCEEEEEccCccHHHHHHHHHhCCCc
Q 026506 58 PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIM---YLELVPGCLVLESGTGSGSLTTSLARAVAPTG 134 (237)
Q Consensus 58 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~ 134 (237)
.+|..+....+..++.+.|.. +...+.++. .+.++++.+|||+|||+|.++..++...+ .+
T Consensus 34 ~~g~~~~~~~~~~~~~~~~~r---------------~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g 97 (226)
T PRK04266 34 VYGERLIKWEGVEYREWNPRR---------------SKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EG 97 (226)
T ss_pred CCCceEEecCCcEEEEECCCc---------------cchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CC
Confidence 355656555555566666621 122222333 47889999999999999999999998874 57
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhc---hHHHHHhcccCCCEEEE
Q 026506 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCS 211 (237)
Q Consensus 135 ~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~---~l~~~~~~L~~gG~l~~ 211 (237)
+|+++|+++.+++.+.+++... .+ +.+..+|+............||+|+++.+.++. +++++.+.|||||.+++
T Consensus 98 ~V~avD~~~~ml~~l~~~a~~~--~n-v~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 98 VVYAVEFAPRPMRELLEVAEER--KN-IIPILADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred eEEEEECCHHHHHHHHHHhhhc--CC-cEEEECCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 9999999999999887766543 34 788888876311001111469999998877653 48999999999999997
Q ss_pred E------eCC---HHHHHHHHHHHHh-cCccccc
Q 026506 212 F------SPC---IEQVQRSCESLRL-NFTGKES 235 (237)
Q Consensus 212 ~------~~~---~~~~~~~~~~l~~-~f~~v~~ 235 (237)
. ... ....++.++.+++ ||+.++.
T Consensus 175 ~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 175 AIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEV 208 (226)
T ss_pred EEecccccCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3 221 1223445677777 7876553
No 15
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.70 E-value=4.4e-16 Score=120.90 Aligned_cols=119 Identities=27% Similarity=0.316 Sum_probs=96.2
Q ss_pred ccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 026506 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (237)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 170 (237)
+..+...+.+++.+.+.++++|||+|||+|..+..+++.+++.++|+++|+++++++.|++++...+..+++++..+|..
T Consensus 55 ~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 55 ISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred echHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 33444455677888889999999999999999999988876567999999999999999999998887666899999987
Q ss_pred CCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 171 ~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+ .++. ...||+|+++..... ..+.+.+.|+|||++++-.
T Consensus 135 ~-~~~~--~~~fD~Ii~~~~~~~-~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 R-GLEK--HAPFDAIIVTAAAST-IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred c-CCcc--CCCccEEEEccCcch-hhHHHHHhcCcCcEEEEEE
Confidence 4 2332 168999998866443 5678899999999997543
No 16
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.70 E-value=5.3e-16 Score=121.45 Aligned_cols=120 Identities=29% Similarity=0.327 Sum_probs=98.0
Q ss_pred ccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506 89 TQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (237)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d 168 (237)
..+..|...+.+++.+.++++.+|||+|||+|.++..++...+..++|+++|+++++++.|++++...++.+ +++..+|
T Consensus 58 ~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d 136 (215)
T TIGR00080 58 QTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGD 136 (215)
T ss_pred CEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECC
Confidence 344455556678888899999999999999999999999887555789999999999999999999988866 9999999
Q ss_pred ccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 169 IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 169 ~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..+ .++.. ..||+|+++.+.+. ..+.+.+.|+|||++++..
T Consensus 137 ~~~-~~~~~--~~fD~Ii~~~~~~~-~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 137 GTQ-GWEPL--APYDRIYVTAAGPK-IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred ccc-CCccc--CCCCEEEEcCCccc-ccHHHHHhcCcCcEEEEEE
Confidence 874 22221 57999998865443 6788899999999988654
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.69 E-value=1.7e-16 Score=119.66 Aligned_cols=127 Identities=28% Similarity=0.334 Sum_probs=95.2
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
+++.+...++.+|||+|||+|.++..++... +..+++++|+++.+++.++++++.+++.+ +++...|..+ ..+.
T Consensus 23 L~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~-~~~~--- 96 (170)
T PF05175_consen 23 LLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFE-ALPD--- 96 (170)
T ss_dssp HHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTT-TCCT---
T ss_pred HHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccc-cccc---
Confidence 4555554478899999999999999998874 55689999999999999999999999888 9999999874 3443
Q ss_pred CCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506 180 GLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES 235 (237)
Q Consensus 180 ~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~ 235 (237)
+.||+|++|+|-. ..+++.+.+.|+|||.++++.......++. +++.|..+++
T Consensus 97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~ 159 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEV 159 (170)
T ss_dssp TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EE
T ss_pred cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEE
Confidence 7899999998732 357889999999999997655443333333 4444555443
No 18
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.69 E-value=1.1e-16 Score=123.63 Aligned_cols=122 Identities=31% Similarity=0.393 Sum_probs=96.2
Q ss_pred CcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 026506 87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~ 166 (237)
....+..|...+.+++.++++||++|||+|||+|+.+..++...++..+|+++|.++...+.|++++...+..+ +.+..
T Consensus 51 ~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~ 129 (209)
T PF01135_consen 51 CGQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVV 129 (209)
T ss_dssp TTEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEE
T ss_pred ceeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEE
Confidence 34455567777789999999999999999999999999999998777789999999999999999999999877 99999
Q ss_pred ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 167 RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 167 ~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+|.. ..++.. ..||.|++....+ +.-..+.+.|++||++++-.
T Consensus 130 gdg~-~g~~~~--apfD~I~v~~a~~-~ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 130 GDGS-EGWPEE--APFDRIIVTAAVP-EIPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp S-GG-GTTGGG---SEEEEEESSBBS-S--HHHHHTEEEEEEEEEEE
T ss_pred cchh-hccccC--CCcCEEEEeeccc-hHHHHHHHhcCCCcEEEEEE
Confidence 9987 445442 6899999876554 35577889999999998644
No 19
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.69 E-value=1.2e-15 Score=118.26 Aligned_cols=119 Identities=24% Similarity=0.296 Sum_probs=100.2
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cCCC--CCCCCCCCCCE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI-QGQG--FPDEFSGLADS 184 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~~~~D~ 184 (237)
++.+|||+|||+|..+..++... +..+++++|+++++++.+++++...+..+ +.+..+|+ .... ++. +.||+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~---~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPD---GSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCc---cccce
Confidence 67899999999999999998875 55789999999999999999998877755 99999998 4322 333 67999
Q ss_pred EEEeCCCh-------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 185 IFLDLPQP-------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 185 v~~~~~~~-------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
|+++.+.+ ..+++++.+.|+|||.+++..+.......+++.+++ ++.
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGF 175 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccc
Confidence 99876543 247999999999999999999988999999999988 654
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=99.68 E-value=1.8e-15 Score=126.10 Aligned_cols=109 Identities=20% Similarity=0.262 Sum_probs=92.0
Q ss_pred HHHhcCC-----CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC
Q 026506 100 VIMYLEL-----VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (237)
Q Consensus 100 ~~~~~~~-----~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 174 (237)
++..+.+ .++.+|||+|||+|.++..++... ..+|+++|+++.+++.++++....+..+++++..+|+.+.++
T Consensus 105 ~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 182 (340)
T PLN02244 105 SLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF 182 (340)
T ss_pred HHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC
Confidence 4555555 678999999999999999998875 468999999999999999998888876669999999987666
Q ss_pred CCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEe
Q 026506 175 PDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 175 ~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+. +.||+|+. +.++...+++++.+.|||||++++..
T Consensus 183 ~~---~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 183 ED---GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CC---CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 65 78999986 34566779999999999999998764
No 21
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=119.33 Aligned_cols=135 Identities=21% Similarity=0.183 Sum_probs=110.3
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
++..+..+....+|||+|||.|.+++.++.+... .+++++|+++++.++|+++++.+++..++++++.|+.+..... .
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~-~ 112 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL-V 112 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc-c
Confidence 3555666677889999999999999999998644 8999999999999999999999999889999999998622211 1
Q ss_pred CCCCCEEEEeCCCh-----------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506 179 SGLADSIFLDLPQP-----------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE 234 (237)
Q Consensus 179 ~~~~D~v~~~~~~~-----------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~ 234 (237)
..+||+|++|+|-. .++++.+.+.|||||.+.++-+ .+.+.++++.++. +|...+
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r-~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR-PERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec-HHHHHHHHHHHHhcCCCceE
Confidence 14699999998711 2568889999999999997776 5678889999999 777665
Q ss_pred cc
Q 026506 235 SC 236 (237)
Q Consensus 235 ~~ 236 (237)
.|
T Consensus 192 i~ 193 (248)
T COG4123 192 IQ 193 (248)
T ss_pred EE
Confidence 54
No 22
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.67 E-value=2.1e-15 Score=116.27 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=109.4
Q ss_pred CCHHHHhhhcCCcccccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCC-----cEEEEEeCCHHHHHHHH
Q 026506 76 PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT-----GHVYTFDFHEQRAASAR 150 (237)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~-----~~v~~vD~~~~~~~~a~ 150 (237)
+.++.+++.++.+.+.+|.. ..+..+++.+++++||++||||-.+..+++..... .+|+++|+|+++++.++
T Consensus 71 ~~YD~mND~mSlGiHRlWKd---~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk 147 (296)
T KOG1540|consen 71 KKYDIMNDAMSLGIHRLWKD---MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK 147 (296)
T ss_pred HHHHHHHHHhhcchhHHHHH---HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH
Confidence 34556666666666666632 26788899999999999999999999999987432 79999999999999999
Q ss_pred HHHHHcCCCCc--EEEEEccccCCCCCCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 151 EDFERTGVSSF--VTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 151 ~~~~~~~~~~~--i~~~~~d~~~~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++.++.++... +.++.+|+++.++++ ..||...+ +.+++...+++++|+|||||++..+.-
T Consensus 148 qRa~~~~l~~~~~~~w~~~dAE~LpFdd---~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 148 QRAKKRPLKASSRVEWVEGDAEDLPFDD---DSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred HHHhhcCCCcCCceEEEeCCcccCCCCC---CcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEc
Confidence 99877776544 889999999988887 78998754 677888999999999999999986653
No 23
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.67 E-value=1.9e-15 Score=122.57 Aligned_cols=130 Identities=26% Similarity=0.312 Sum_probs=102.4
Q ss_pred HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
....+.++++|||+|||+|..+..++...++..+++++|+++.+++.|+++....+..+ +++..+|+.+.+++. +.
T Consensus 71 ~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~l~~~~---~~ 146 (272)
T PRK11873 71 ALAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEALPVAD---NS 146 (272)
T ss_pred hhccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhhCCCCC---Cc
Confidence 34567899999999999999888888777666789999999999999999998888765 889999987645544 68
Q ss_pred CCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeCCH----------------------HHHHHHHHHHHh-cCccc
Q 026506 182 ADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCI----------------------EQVQRSCESLRL-NFTGK 233 (237)
Q Consensus 182 ~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~----------------------~~~~~~~~~l~~-~f~~v 233 (237)
||+|+.+. ++...+++++.+.|||||++++..... .+..++.+.+++ +|..+
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence 99998654 355678999999999999999753210 123466777777 78766
Q ss_pred cc
Q 026506 234 ES 235 (237)
Q Consensus 234 ~~ 235 (237)
++
T Consensus 227 ~i 228 (272)
T PRK11873 227 TI 228 (272)
T ss_pred EE
Confidence 54
No 24
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.66 E-value=1e-14 Score=112.66 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=100.9
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.++..+.+.++.+|||+|||+|.++..++... +..+++++|+++++++.++++++.++..+ +++..+|+.+ .+.. .
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~-~~~~-~ 106 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPE-CLAQ-L 106 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHH-HHhh-C
Confidence 36777788899999999999999999888664 45799999999999999999999888765 8999998853 1111 1
Q ss_pred CCCCCEEEEeCCCh-hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506 179 SGLADSIFLDLPQP-WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (237)
Q Consensus 179 ~~~~D~v~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 228 (237)
...+|.++++.... ..+++.+.+.|+|||++++..+..++.....+.+++
T Consensus 107 ~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 157 (196)
T PRK07402 107 APAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQ 157 (196)
T ss_pred CCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHh
Confidence 13468888776543 468999999999999999998888777777777765
No 25
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.66 E-value=2.1e-15 Score=121.45 Aligned_cols=133 Identities=28% Similarity=0.324 Sum_probs=101.7
Q ss_pred cccccccHHH--HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506 90 QILYIADISF--VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (237)
Q Consensus 90 ~~~~~~~~~~--~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~ 167 (237)
..++.++.+. ....+++++|.+|||+|||+|+.+.+++..++..+.|+++|+++.+++.++++++++++.+ +.+...
T Consensus 51 G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~ 129 (264)
T TIGR00446 51 GLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNF 129 (264)
T ss_pred CeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecC
Confidence 3344444443 3356788999999999999999999999987666799999999999999999999999876 889988
Q ss_pred cccCCCCCCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH---H
Q 026506 168 DIQGQGFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI---E 217 (237)
Q Consensus 168 d~~~~~~~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~---~ 217 (237)
|........ +.||.|++|+|+. .++|+.+.+.|||||+|+ |++|. .
T Consensus 130 D~~~~~~~~---~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv-Ystcs~~~~ 205 (264)
T TIGR00446 130 DGRVFGAAV---PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV-YSTCSLEPE 205 (264)
T ss_pred CHHHhhhhc---cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeCCCChH
Confidence 876422222 5699999998743 137888999999999997 77664 3
Q ss_pred HHHHHHHHHH
Q 026506 218 QVQRSCESLR 227 (237)
Q Consensus 218 ~~~~~~~~l~ 227 (237)
..+...+.+-
T Consensus 206 Ene~vv~~~l 215 (264)
T TIGR00446 206 ENEAVVDYLL 215 (264)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 26
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.65 E-value=2.5e-15 Score=115.77 Aligned_cols=121 Identities=22% Similarity=0.388 Sum_probs=101.7
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC---CCCCCCCCCC
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG---FPDEFSGLAD 183 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~~D 183 (237)
....++||+|||+|.++..++... +..+++++|+++.+++.|++++...++.+ +.+..+|+.+.. ++. +.+|
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~~~~~---~~~d 89 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDKFFPD---GSLS 89 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHhhCCC---Ccee
Confidence 345699999999999999999875 66899999999999999999998888775 999999986411 222 5799
Q ss_pred EEEEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-c-Ccc
Q 026506 184 SIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N-FTG 232 (237)
Q Consensus 184 ~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~-f~~ 232 (237)
.|+++.|++| .+++.+.+.|||||.+++........+.+++.+.+ + |..
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 9999988764 47899999999999999998888888888888887 3 654
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.64 E-value=5e-15 Score=109.74 Aligned_cols=106 Identities=25% Similarity=0.390 Sum_probs=88.5
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
+.+.+|||+|||+|.++..++....+..+++++|+++++++.|+++++..+.++ +++.++|+.+ ++....+.||+|+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n-i~~~~~d~~~--l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN-IEFIQGDIED--LPQELEEKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT-EEEEESBTTC--GCGCSSTTEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc-cceEEeehhc--cccccCCCeeEEE
Confidence 467899999999999999999766667899999999999999999999889885 9999999986 4321115799999
Q ss_pred EeC-----CChhchHHHHHhcccCCCEEEEEeCC
Q 026506 187 LDL-----PQPWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 187 ~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
.+. .++..+++++.+.|+++|++++..+.
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 864 34456899999999999999988776
No 28
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.64 E-value=1e-14 Score=111.11 Aligned_cols=119 Identities=22% Similarity=0.119 Sum_probs=94.0
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
++++.+|||+|||+|..+..++... +..+|+++|+++.+++.|+++.+..+.++ +++..+|+.+... . ++||+|
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~---~~fDlV 116 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-E---EKFDVV 116 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-C---CCccEE
Confidence 3458999999999999999988864 56899999999999999999999998877 9999999875322 2 689999
Q ss_pred EEeCC-ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 186 FLDLP-QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 186 ~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
+++.- ....+++.+.+.|+|||+++++.... ...++.+..+. |+.
T Consensus 117 ~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~-~~~~l~~~~~~~~~~ 163 (187)
T PRK00107 117 TSRAVASLSDLVELCLPLLKPGGRFLALKGRD-PEEEIAELPKALGGK 163 (187)
T ss_pred EEccccCHHHHHHHHHHhcCCCeEEEEEeCCC-hHHHHHHHHHhcCce
Confidence 98643 34568999999999999999886543 34444444443 544
No 29
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.64 E-value=1.7e-15 Score=126.79 Aligned_cols=189 Identities=21% Similarity=0.216 Sum_probs=121.5
Q ss_pred CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEe--ccCcEE-EEECCCHHHHhhh-----
Q 026506 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFS--NKGGFV-YLLAPTPELWTLV----- 84 (237)
Q Consensus 13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~--~~~~~~-~~~~~~~~~~~~~----- 84 (237)
.+.+|+||||++.+..+ ||.|.+|+.|.+++|+..+ -+|..... ..|+|. |+..|. +.....
T Consensus 73 ~~~~~~GdrVvv~~~~~--------Cg~C~~C~~G~~~~C~~~~-~~g~~~~~~~~~G~~aEyv~vp~-~~~~~~~pd~~ 142 (350)
T COG1063 73 VRGFKVGDRVVVEPNIP--------CGHCRYCRAGEYNLCENPG-FYGYAGLGGGIDGGFAEYVRVPA-DFNLAKLPDGI 142 (350)
T ss_pred ccCCCCCCEEEECCCcC--------CCCChhHhCcCcccCCCcc-ccccccccCCCCCceEEEEEecc-ccCeecCCCCC
Confidence 35699999999999777 9999999999999998221 12222111 346666 555554 211111
Q ss_pred cCCcccccccccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506 85 LSHRTQILYIADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF 161 (237)
Q Consensus 85 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 161 (237)
......+..|...+. ........++.+|+.+|||+ |.++.++++.. +..+|+++|.++++++.|++.. +.+.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~---g~~~- 217 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAG---GADV- 217 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhC---CCeE-
Confidence 112334445555542 23333445566999999999 77777777776 4589999999999999999852 2221
Q ss_pred EEEEEc-cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCHH
Q 026506 162 VTVGVR-DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIE 217 (237)
Q Consensus 162 i~~~~~-d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 217 (237)
+..... +..........+.++|++|.....+ .+++.+.+++++||++++++....
T Consensus 218 ~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~-~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 218 VVNPSEDDAGAEILELTGGRGADVVIEAVGSP-PALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred eecCccccHHHHHHHHhCCCCCCEEEECCCCH-HHHHHHHHHhcCCCEEEEEeccCC
Confidence 211111 1111111111123799998877744 489999999999999998876543
No 30
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.63 E-value=4.7e-15 Score=126.99 Aligned_cols=113 Identities=26% Similarity=0.451 Sum_probs=94.2
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
+...+++.+|.+|||+|||+|+.+.+++..+++.++|+++|+++.+++.+++++++.|+.+ +++...|+.. ++....
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~--l~~~~~ 305 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAER--LTEYVQ 305 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhh--hhhhhh
Confidence 4456788999999999999999999999988767899999999999999999999999876 8899999864 221112
Q ss_pred CCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506 180 GLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 180 ~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
+.||.|++|+|+. .+.+.++.+.|||||+++ |++|.
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lv-YsTCs 368 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILL-YSTCT 368 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEECC
Confidence 6799999998852 245889999999999976 77665
No 31
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=6.8e-15 Score=118.00 Aligned_cols=124 Identities=27% Similarity=0.296 Sum_probs=98.1
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
.++|.++||+|||||-++++.+.. +..+++++|++|.+++.+++|+..+++...++....+... .+. .+.||+|
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~--~~~--~~~~DvI 233 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE--VPE--NGPFDVI 233 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh--hcc--cCcccEE
Confidence 458999999999999999887766 5578999999999999999999999977523333333321 222 1589999
Q ss_pred EEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506 186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES 235 (237)
Q Consensus 186 ~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~ 235 (237)
+.|.-.. ..+...+.+.++|||++++.+...++.+.+.+.+.+ +|.-+++
T Consensus 234 VANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 234 VANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred EehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 9997432 257888999999999999999888999999999966 8875543
No 32
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.62 E-value=1.5e-14 Score=124.22 Aligned_cols=136 Identities=28% Similarity=0.364 Sum_probs=108.5
Q ss_pred ccccccccHHH--HHHhc--CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 026506 89 TQILYIADISF--VIMYL--ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (237)
Q Consensus 89 ~~~~~~~~~~~--~~~~~--~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~ 164 (237)
...++.++.+. ....+ ++.+|++|||+++|+|+-+.+++..++..+.++++|+++.+++.+++++++.|+.+ +.+
T Consensus 90 ~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v 168 (470)
T PRK11933 90 SGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VAL 168 (470)
T ss_pred CCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEE
Confidence 44455555543 33556 78999999999999999999999998777899999999999999999999999977 888
Q ss_pred EEccccCCCCCCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH-
Q 026506 165 GVRDIQGQGFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI- 216 (237)
Q Consensus 165 ~~~d~~~~~~~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~- 216 (237)
...|... +.......||.|++|+|+. .+.|..+.+.|||||+|+ |++|+
T Consensus 169 ~~~D~~~--~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV-YSTCT~ 245 (470)
T PRK11933 169 THFDGRV--FGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV-YSTCTL 245 (470)
T ss_pred EeCchhh--hhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE-EECCCC
Confidence 8888764 2211225799999999855 257889999999999985 99997
Q ss_pred --HHHHHHHHHHHh
Q 026506 217 --EQVQRSCESLRL 228 (237)
Q Consensus 217 --~~~~~~~~~l~~ 228 (237)
++.+...+.+-+
T Consensus 246 ~~eENE~vV~~~L~ 259 (470)
T PRK11933 246 NREENQAVCLWLKE 259 (470)
T ss_pred CHHHHHHHHHHHHH
Confidence 666776665544
No 33
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.62 E-value=1.3e-14 Score=110.34 Aligned_cols=123 Identities=20% Similarity=0.184 Sum_probs=98.1
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
+...+...++.+|||+|||+|.++..++... .+++++|+++.+++.+++++..++. + +++..+|+.+ ...
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~-~~~~~~d~~~--~~~--- 80 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-G-LDVVMTDLFK--GVR--- 80 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEccccc--ccC---
Confidence 4455556677899999999999999888762 3899999999999999999987764 3 7888888764 222
Q ss_pred CCCCEEEEeCCCh--------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcc
Q 026506 180 GLADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTG 232 (237)
Q Consensus 180 ~~~D~v~~~~~~~--------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~ 232 (237)
+.||+|+.++|-. ..+++++.+.|+|||+++++.+...+..++.+.+++ +|..
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~ 160 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRY 160 (179)
T ss_pred CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeE
Confidence 5799999886521 235888999999999999888777768888888888 7753
No 34
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.62 E-value=1.4e-14 Score=110.08 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=90.0
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
++.+|||+|||+|.++..++.. .+..+|+++|.++++++.++++.+..+..+ +++..+|+.+ +.. .+.||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~--~~~--~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAED--FQH--EEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhh--ccc--cCCccEEEe
Confidence 4889999999999999888765 456789999999999999999998888766 9999999875 222 268999998
Q ss_pred eC-CChhchHHHHHhcccCCCEEEEEeCCH--HHHHHHHHHHHh-cCc
Q 026506 188 DL-PQPWLAIPSAKKMLKQDGILCSFSPCI--EQVQRSCESLRL-NFT 231 (237)
Q Consensus 188 ~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~-~f~ 231 (237)
+. ......++.+.+.|+|||++++..... ..+....+.+.. +|.
T Consensus 116 ~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 116 RALASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred hhhhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 75 233457888999999999998775432 223344344333 554
No 35
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.62 E-value=1.2e-14 Score=124.96 Aligned_cols=116 Identities=25% Similarity=0.407 Sum_probs=94.3
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DE 177 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 177 (237)
.+...+.+.+|++|||+|||+|+.+.+++..+++.++++++|+++.+++.+++++.++|+.+ +.+...|+.+.... ..
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQ 321 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhccccccc
Confidence 35556788999999999999999999999987666799999999999999999999999877 89999998752200 01
Q ss_pred CCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506 178 FSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
..+.||.|++|+|+. .+.++++.+.|||||+++ |++|.
T Consensus 322 ~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv-ystcs 386 (434)
T PRK14901 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV-YATCT 386 (434)
T ss_pred ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence 125799999998742 246899999999999998 55543
No 36
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.61 E-value=8.5e-15 Score=119.51 Aligned_cols=177 Identities=19% Similarity=0.223 Sum_probs=121.3
Q ss_pred cCCCCCCCCEEEE-EEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCcc
Q 026506 12 FTRCIKEGDLVIV-YERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT 89 (237)
Q Consensus 12 ~~~~~~~Gd~V~i-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 89 (237)
-.+.||+||||.+ ....+ ||+|.+|+.|.-+.|+. .+..|. +.+|+|. |...+. .+...++...
T Consensus 75 ~V~~~k~GDrVgV~~~~~~--------Cg~C~~C~~G~E~~C~~-~~~~gy---~~~GGyaeyv~v~~--~~~~~iP~~~ 140 (339)
T COG1064 75 GVTGLKVGDRVGVGWLVIS--------CGECEYCRSGNENLCPN-QKITGY---TTDGGYAEYVVVPA--RYVVKIPEGL 140 (339)
T ss_pred CCccCCCCCEEEecCccCC--------CCCCccccCcccccCCC-ccccce---eecCcceeEEEEch--HHeEECCCCC
Confidence 3457999999999 66667 99999999999888874 233333 3567777 555542 2323333321
Q ss_pred cccc--cccHH-----HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506 90 QILY--IADIS-----FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF 161 (237)
Q Consensus 90 ~~~~--~~~~~-----~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 161 (237)
.... |...+ ..+...+.+||++|+..|+|. |.+++++++.++ .+|+++|.+++..+.|++ +|.+..
T Consensus 141 d~~~aApllCaGiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd~~ 214 (339)
T COG1064 141 DLAEAAPLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGADHV 214 (339)
T ss_pred ChhhhhhhhcCeeeEeeehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCcEE
Confidence 1111 11000 144567889999999999996 788899999874 899999999999999998 465543
Q ss_pred EEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506 162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 162 i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
++....|.. .... +.+|+|+...+ ...++...+.|++||++++++-.
T Consensus 215 i~~~~~~~~-~~~~----~~~d~ii~tv~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 215 INSSDSDAL-EAVK----EIADAIIDTVG--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEcCCchhh-HHhH----hhCcEEEECCC--hhhHHHHHHHHhcCCEEEEECCC
Confidence 332222222 1111 34999887776 45899999999999999987643
No 37
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.60 E-value=3.9e-14 Score=115.53 Aligned_cols=122 Identities=24% Similarity=0.251 Sum_probs=97.5
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..++.+|||+|||+|.++..++.. +..+++++|+++.+++.|++++..+++...+.+...+... ... ++||+|
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~---~~fDlV 229 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIE---GKADVI 229 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccC---CCceEE
Confidence 457899999999999999777654 3468999999999999999999988877656666665321 222 689999
Q ss_pred EEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCcccc
Q 026506 186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKE 234 (237)
Q Consensus 186 ~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~ 234 (237)
+.+.... ..++..+.+.|+|||.+++......+..++.+.++++|.-++
T Consensus 230 van~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~ 280 (288)
T TIGR00406 230 VANILAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVE 280 (288)
T ss_pred EEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceee
Confidence 9886533 357889999999999999888888888888888877776544
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=1.3e-14 Score=115.94 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=83.6
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
+.++.+|||+|||+|..+..++..+ .+..+++++|+|+.+++.|++++...+...++++..+|+.+. +. ..+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~--~~---~~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI--AI---ENASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC--CC---CCCCE
Confidence 4578899999999999998888753 356899999999999999999998877766699999998753 32 45898
Q ss_pred EEEeCC-------ChhchHHHHHhcccCCCEEEEEe
Q 026506 185 IFLDLP-------QPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 185 v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
|+++.. ....+++++.+.|||||.+++..
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 875421 22468999999999999998764
No 39
>PRK14967 putative methyltransferase; Provisional
Probab=99.59 E-value=4.4e-14 Score=111.23 Aligned_cols=123 Identities=26% Similarity=0.236 Sum_probs=95.3
Q ss_pred HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
+..+.+.++.+|||+|||+|.++..++.. +..+++++|+++.+++.+++++..++. + +.+..+|+.+ .++. +
T Consensus 29 l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~-~~~~~~d~~~-~~~~---~ 100 (223)
T PRK14967 29 LAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-D-VDVRRGDWAR-AVEF---R 100 (223)
T ss_pred HHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-e-eEEEECchhh-hccC---C
Confidence 34445678899999999999999888765 335899999999999999999887775 3 7788888864 3333 6
Q ss_pred CCCEEEEeCCCh--------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 181 LADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 181 ~~D~v~~~~~~~--------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
.||+|++++|-. ..+++++.+.|+|||+++++.+...+..++++.++. +|.
T Consensus 101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLD 178 (223)
T ss_pred CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCC
Confidence 799999986521 125677899999999999876665566778888877 553
No 40
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=3.4e-14 Score=114.11 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=86.7
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-CCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEF 178 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~ 178 (237)
++..+. .++.+|||+|||+|.++..++.. ..+|+++|+++++++.|+++....++.+++++..+|+.+. ....
T Consensus 37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~-- 110 (255)
T PRK11036 37 LLAELP-PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE-- 110 (255)
T ss_pred HHHhcC-CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC--
Confidence 445554 45689999999999999998876 3689999999999999999998888766689999988652 1233
Q ss_pred CCCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+.||+|+++ ..++..+++++.+.|||||++++..
T Consensus 111 -~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 111 -TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred -CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 689999864 3466788999999999999997654
No 41
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.59 E-value=4.1e-14 Score=122.12 Aligned_cols=114 Identities=28% Similarity=0.440 Sum_probs=93.8
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.+...+.+.++.+|||+|||+|..+..++...++.++++++|+++.+++.++++++.+++.+ +++..+|+.+. ....
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~--~~~~ 317 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKV--HEKF 317 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccc--cchh
Confidence 34557788899999999999999999999987666899999999999999999999999877 99999998752 1111
Q ss_pred CCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506 179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 179 ~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
.+.||+|++|+|+. .++++.+.+.|||||+++ |++|.
T Consensus 318 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv-ystcs 381 (444)
T PRK14902 318 AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV-YSTCT 381 (444)
T ss_pred cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE-EEcCC
Confidence 15799999998732 246888999999999998 66554
No 42
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=3.3e-14 Score=113.49 Aligned_cols=185 Identities=16% Similarity=0.117 Sum_probs=125.3
Q ss_pred ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEEEEECCCHHHHhhhcC----
Q 026506 11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLS---- 86 (237)
Q Consensus 11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---- 86 (237)
+-...+|+||||++.+..+ |+.|..|+.|.++.|.-+.-. . .....|.+..+... ++++-..+|
T Consensus 78 ~~Vk~LkVGDrVaiEpg~~--------c~~cd~CK~GrYNlCp~m~f~--a-tpp~~G~la~y~~~-~~dfc~KLPd~vs 145 (354)
T KOG0024|consen 78 DEVKHLKVGDRVAIEPGLP--------CRDCDFCKEGRYNLCPHMVFC--A-TPPVDGTLAEYYVH-PADFCYKLPDNVS 145 (354)
T ss_pred ccccccccCCeEEecCCCc--------cccchhhhCcccccCCccccc--c-CCCcCCceEEEEEe-chHheeeCCCCCc
Confidence 4567799999999999887 888999999999999744321 1 11234555533333 222222222
Q ss_pred -CcccccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 87 -HRTQILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 87 -~~~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
...+++.|..++. ...+..+++|.+||.+|+|+ |.++...|+.++ ..+|+.+|.++++++.|++ .|.+....
T Consensus 146 ~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~----~Ga~~~~~ 220 (354)
T KOG0024|consen 146 FEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK----FGATVTDP 220 (354)
T ss_pred hhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH----hCCeEEee
Confidence 4567778877664 66778899999999999999 777888888874 5899999999999999998 46554222
Q ss_pred EEEccccC---CCCCCC-CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 164 VGVRDIQG---QGFPDE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 164 ~~~~d~~~---~~~~~~-~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
....+..+ ...... ....+|+.|.+.... ..++.+...++.||.+++..
T Consensus 221 ~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~-~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 221 SSHKSSPQELAELVEKALGKKQPDVTFDCSGAE-VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred ccccccHHHHHHHHHhhccccCCCeEEEccCch-HHHHHHHHHhccCCEEEEec
Confidence 22222000 001111 113589977655443 48899999999999977553
No 43
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.59 E-value=1e-13 Score=98.84 Aligned_cols=110 Identities=25% Similarity=0.342 Sum_probs=87.8
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
++..+.+.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...+..+ +++...|+... .+. ..
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~ 86 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEA-LED-SL 86 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEecccccc-Chh-hc
Confidence 5666677788899999999999999999886 44799999999999999999998887765 88888887531 111 11
Q ss_pred CCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEe
Q 026506 180 GLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 180 ~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..||.|+.+.. ...++++.+.+.|+|||.+++..
T Consensus 87 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 57999998653 33468999999999999998643
No 44
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=3.1e-14 Score=113.63 Aligned_cols=127 Identities=24% Similarity=0.260 Sum_probs=100.7
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.+++.+....+.+|||+|||.|.+++.+++.. |..+++.+|.|..+++.+++|+..++.++. .+...|.. .+..
T Consensus 149 lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~-~~v~--- 222 (300)
T COG2813 149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLY-EPVE--- 222 (300)
T ss_pred HHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccc-cccc---
Confidence 47777877777799999999999999999985 678999999999999999999999988774 66777765 2333
Q ss_pred CCCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506 179 SGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES 235 (237)
Q Consensus 179 ~~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~ 235 (237)
++||+|+.|+|-+ |+.++.+.+.|++||.|.++.-. .......|++.|.++++
T Consensus 223 -~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~---~l~y~~~L~~~Fg~v~~ 285 (300)
T COG2813 223 -GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR---HLPYEKKLKELFGNVEV 285 (300)
T ss_pred -ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC---CCChHHHHHHhcCCEEE
Confidence 5799999999833 47899999999999999877652 22333455555666554
No 45
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=4.4e-14 Score=112.45 Aligned_cols=109 Identities=23% Similarity=0.248 Sum_probs=92.9
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.+++.++++||++|||||||.|.+++.+++.. +.+|+++++|++..+.+++++...|+..++++...|..+ +.
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd--~~--- 135 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD--FE--- 135 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc--cc---
Confidence 47788899999999999999999999999986 489999999999999999999999998779999998864 44
Q ss_pred CCCCCEEEE-----eCC--ChhchHHHHHhcccCCCEEEEEeCC
Q 026506 179 SGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 179 ~~~~D~v~~-----~~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
+.||.|+. ... ....+++.+.+.|+|||++++.+..
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence 45999874 222 3457899999999999999866543
No 46
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.58 E-value=4.9e-14 Score=121.58 Aligned_cols=112 Identities=23% Similarity=0.379 Sum_probs=92.9
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.....+.+.+|++|||+|||+|+.+.+++..++..++|+++|+++.+++.+++++...|+.+ +++..+|+.... +.
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~~-~~-- 316 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSFS-PE-- 316 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCcccccc-cC--
Confidence 45567788899999999999999999999887666799999999999999999999998865 899999987422 22
Q ss_pred CCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506 179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 179 ~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
..||+|++|+|+. ..++..+.+.|+|||+++ |++|.
T Consensus 317 -~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv-ystcs 379 (445)
T PRK14904 317 -EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLV-YATCS 379 (445)
T ss_pred -CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE-EEeCC
Confidence 5799999997742 136889999999999998 55543
No 47
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.58 E-value=4e-14 Score=118.43 Aligned_cols=110 Identities=19% Similarity=0.230 Sum_probs=89.0
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEccccCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--SFVTVGVRDIQGQGFPD 176 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~ 176 (237)
.+++.+....+.+|||+|||+|.++..++... +..+|+++|.|+.+++.++++++.++.. .++++...|... .++.
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~ 296 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP 296 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCC
Confidence 46677766656799999999999999998874 6689999999999999999999877643 247888888763 3333
Q ss_pred CCCCCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEe
Q 026506 177 EFSGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 177 ~~~~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+||+|++|+|-. ++++..+.+.|+|||.++++.
T Consensus 297 ---~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 297 ---FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ---CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5799999998732 467899999999999998775
No 48
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.58 E-value=4.7e-14 Score=113.58 Aligned_cols=108 Identities=23% Similarity=0.262 Sum_probs=87.9
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.++..+.+.++.+|||+|||+|..+..++... ..+|+++|+++.+++.|+++... .+++.+...|+.+.+++.
T Consensus 43 ~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~-- 115 (263)
T PTZ00098 43 KILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPE-- 115 (263)
T ss_pred HHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCC--
Confidence 47777888999999999999999998887653 36899999999999999987543 244889999987655655
Q ss_pred CCCCCEEEEe-----CC--ChhchHHHHHhcccCCCEEEEEeC
Q 026506 179 SGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 179 ~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+.||+|+.. .+ +...+++++.+.|||||++++...
T Consensus 116 -~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 116 -NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred -CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 789999862 22 445789999999999999997653
No 49
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.57 E-value=1.2e-13 Score=107.84 Aligned_cols=116 Identities=28% Similarity=0.314 Sum_probs=93.4
Q ss_pred ccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 026506 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (237)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 170 (237)
+..|.....++..+.+.++.+|||+|||+|..+..++... .+++++|+++++++.+++++...++.+ +++..+|..
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~ 136 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW 136 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence 3445555567788888999999999999999998777663 489999999999999999999888876 999999986
Q ss_pred CCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 171 GQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 171 ~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+ .++.. +.||+|+++..... ..+.+.+.|+|||++++...
T Consensus 137 ~-~~~~~--~~fD~I~~~~~~~~-~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 137 K-GWPAY--APFDRILVTAAAPE-IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred c-CCCcC--CCcCEEEEccCchh-hhHHHHHhcCCCcEEEEEEc
Confidence 3 33321 67999998865443 57888999999999986654
No 50
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.57 E-value=3.1e-14 Score=109.76 Aligned_cols=122 Identities=22% Similarity=0.257 Sum_probs=99.4
Q ss_pred cccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-cc
Q 026506 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RD 168 (237)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d 168 (237)
.++.+....++...+...++.+|||+|++.|+.++.++..++.+++++++|+++++.+.|++++++.|+.+++.... +|
T Consensus 41 pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd 120 (219)
T COG4122 41 PIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD 120 (219)
T ss_pred CCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence 33335555555566677788999999999999999999998767899999999999999999999999998888888 57
Q ss_pred ccCCCCCCCCCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEE
Q 026506 169 IQGQGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 169 ~~~~~~~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
..+ .+.....+.||+||+|.. ....+++.+.++|+|||.+++-
T Consensus 121 al~-~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 121 ALD-VLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHH-HHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 765 222122378999999875 4557999999999999999854
No 51
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.57 E-value=4.1e-14 Score=113.98 Aligned_cols=107 Identities=28% Similarity=0.348 Sum_probs=82.6
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.+++.++++||++|||||||.|+++..+++.. +++|+++.+|++..+.+++++...|+.+.+++...|..+ ++
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~~--- 125 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--LP--- 125 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--cC---
Confidence 46778899999999999999999999999986 379999999999999999999999998889999999875 33
Q ss_pred CCCCCEEEE-----eCC--ChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~-----~~~--~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+||.|+. +.+ ....+++.+.+.|+|||++++-.
T Consensus 126 -~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 126 -GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred -CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 47999874 232 23468999999999999998554
No 52
>PRK14968 putative methyltransferase; Provisional
Probab=99.57 E-value=1.2e-13 Score=105.79 Aligned_cols=127 Identities=20% Similarity=0.190 Sum_probs=99.6
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~ 178 (237)
++..+...++.+|||+|||+|.++..++.. ..+++++|+++++++.+++++..++..++ +.+...|+.+ .+..
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~-- 88 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRG-- 88 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccc--
Confidence 444555578889999999999999998877 37899999999999999999887776543 7788888864 3333
Q ss_pred CCCCCEEEEeCCCh--------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 179 SGLADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 179 ~~~~D~v~~~~~~~--------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
..||+|+.+.|-. ..+++++.+.|+|||.++++.+.....+++.+.+.+ +|.
T Consensus 89 -~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~ 167 (188)
T PRK14968 89 -DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFE 167 (188)
T ss_pred -cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCe
Confidence 4799999876421 235899999999999998887776666778888887 775
Q ss_pred cc
Q 026506 232 GK 233 (237)
Q Consensus 232 ~v 233 (237)
..
T Consensus 168 ~~ 169 (188)
T PRK14968 168 AE 169 (188)
T ss_pred ee
Confidence 43
No 53
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.57 E-value=5.6e-14 Score=116.82 Aligned_cols=129 Identities=17% Similarity=0.108 Sum_probs=101.2
Q ss_pred cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (237)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 171 (237)
+.+.....++..++++++++|||+|||+|.+++..+.. ..+++++|+++.+++.+++|++..+..+ +++..+|+.+
T Consensus 166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~ 241 (329)
T TIGR01177 166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATK 241 (329)
T ss_pred CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhc
Confidence 34444445667778899999999999999998775543 4789999999999999999999988877 8889999986
Q ss_pred CCCCCCCCCCCCEEEEeCCC--------------hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506 172 QGFPDEFSGLADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF 230 (237)
Q Consensus 172 ~~~~~~~~~~~D~v~~~~~~--------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f 230 (237)
.+++. +.||+|+.|+|- ...+++.+.+.|+|||+++++.|.... +.+.+++ +|
T Consensus 242 l~~~~---~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~---~~~~~~~~g~ 309 (329)
T TIGR01177 242 LPLSS---ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID---LESLAEDAFR 309 (329)
T ss_pred CCccc---CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC---HHHHHhhcCc
Confidence 54443 689999998761 245788899999999999988875533 3344555 56
No 54
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.57 E-value=2.2e-14 Score=113.34 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=92.2
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC---
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--- 176 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--- 176 (237)
+...+...++.+|||+|||+|+.++.++..+++.++++++|+++++++.|+++++..++.+++++..+|+.+ .++.
T Consensus 60 L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~-~L~~l~~ 138 (234)
T PLN02781 60 LSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS-ALDQLLN 138 (234)
T ss_pred HHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHHh
Confidence 334456677889999999999999999988777789999999999999999999999998889999999975 1111
Q ss_pred -CCCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEE
Q 026506 177 -EFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (237)
Q Consensus 177 -~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~ 211 (237)
...+.||+||+|.. ....+++.+.+.|+|||.+++
T Consensus 139 ~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 139 NDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 01257999999974 446789999999999999885
No 55
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.56 E-value=7.7e-15 Score=103.77 Aligned_cols=101 Identities=30% Similarity=0.421 Sum_probs=84.1
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCCCCCCCCCEEE
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFSGLADSIF 186 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~~D~v~ 186 (237)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...+...++++..+|+.+.. ++. ++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD---GKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT---T-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC---ceeEEEE
Confidence 5789999999999999998884 58999999999999999999999888777999999997622 333 7899999
Q ss_pred EeCCCh-------------hchHHHHHhcccCCCEEEEEeC
Q 026506 187 LDLPQP-------------WLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 187 ~~~~~~-------------~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.|+|-. ..+++.+.+.|+|||.++++.|
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 998732 2468999999999999998765
No 56
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.56 E-value=5.9e-14 Score=120.53 Aligned_cols=115 Identities=23% Similarity=0.309 Sum_probs=89.7
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.+...+++.+|++|||+|||+|+.+.+++..++ .++++++|+++++++.+++++++.|+...+.+..+|....... ..
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~ 306 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AE 306 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-cc
Confidence 466678899999999999999999999999875 5799999999999999999999988763344456665432210 01
Q ss_pred CCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506 179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 179 ~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
.+.||.|++|+|+. .+.|.++.+.|||||+++ |+.|.
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lv-ystcs 370 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLV-YATCS 370 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE-EEeCC
Confidence 26799999987632 247888999999999999 55553
No 57
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.56 E-value=1.5e-13 Score=114.55 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=106.3
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPD 176 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~ 176 (237)
.++..+....+..+||||||+|..+..+|... +...++|+|+++.+++.+.+++...++.+ +.+..+|+.. ..++.
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCC
Confidence 35666666677899999999999999999985 67899999999999999999998888877 9999999854 23444
Q ss_pred CCCCCCCEEEEeCCChh-----------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506 177 EFSGLADSIFLDLPQPW-----------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (237)
Q Consensus 177 ~~~~~~D~v~~~~~~~~-----------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 228 (237)
+.+|.|+++.|+|| .+++.+.+.|+|||.+.+.+......+.+++.+.+
T Consensus 191 ---~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~ 250 (390)
T PRK14121 191 ---NSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLK 250 (390)
T ss_pred ---CceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 78999999998885 57999999999999999888888888777777765
No 58
>PTZ00146 fibrillarin; Provisional
Probab=99.56 E-value=7.4e-14 Score=111.99 Aligned_cols=130 Identities=22% Similarity=0.313 Sum_probs=91.8
Q ss_pred HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCC
Q 026506 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSG 180 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~ 180 (237)
..+.+.++++|||+|||+|.++.+++..+++...|+++|+++.+.+...+..... .+ +.++..|+.... +.. ...
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N-I~~I~~Da~~p~~y~~-~~~ 201 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN-IVPIIEDARYPQKYRM-LVP 201 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-CEEEECCccChhhhhc-ccC
Confidence 3456789999999999999999999999877789999999987665544443322 24 788888986321 111 115
Q ss_pred CCCEEEEeCCChhc---hHHHHHhcccCCCEEEEEe--------CCHHH-HHHHHHHHHh-cCccccc
Q 026506 181 LADSIFLDLPQPWL---AIPSAKKMLKQDGILCSFS--------PCIEQ-VQRSCESLRL-NFTGKES 235 (237)
Q Consensus 181 ~~D~v~~~~~~~~~---~l~~~~~~L~~gG~l~~~~--------~~~~~-~~~~~~~l~~-~f~~v~~ 235 (237)
.+|+|++|...+++ ++.++.+.|||||.+++.. +..++ ..+.++.|++ +|..++.
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~ 269 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQ 269 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 69999999876653 4668899999999998731 11111 2333577887 7886553
No 59
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.56 E-value=1.7e-14 Score=116.71 Aligned_cols=119 Identities=25% Similarity=0.295 Sum_probs=92.9
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..++.+|||+|||||.+++..+.. +..+|+++|++|.+++.|++|++.+++..++.+. .. ..... ++||+|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~--~~~~~---~~~dlv 229 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LS--EDLVE---GKFDLV 229 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CT--SCTCC---S-EEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Ee--ccccc---ccCCEE
Confidence 567899999999999999777665 4578999999999999999999999988766553 11 22333 789999
Q ss_pred EEeCCChh--chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccc
Q 026506 186 FLDLPQPW--LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGK 233 (237)
Q Consensus 186 ~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v 233 (237)
+.|.-... ..+..+.+.|+|||.+++.+...++.+.+.+.++++|.-+
T Consensus 230 vANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~ 279 (295)
T PF06325_consen 230 VANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELV 279 (295)
T ss_dssp EEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEE
T ss_pred EECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEE
Confidence 99986443 4677788899999999988888888999999987676644
No 60
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.55 E-value=2.4e-13 Score=110.56 Aligned_cols=118 Identities=25% Similarity=0.273 Sum_probs=93.5
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
.++.+|||+|||+|.++..++... +..+++++|+|+.+++.|++++..+++.+++++..+|+.+ .++. ..||+|+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~---~~fD~Iv 194 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPG---RKYDLIV 194 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCC---CCccEEE
Confidence 456799999999999999999875 4579999999999999999999988887669999999863 3433 5799999
Q ss_pred EeCCCh------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 187 LDLPQP------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 187 ~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
+|+|-. ..+++.+.+.|+|||++++-... .+ +.+.+.+.+ +|.
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~-~~v~~~~~~~~~~ 268 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM-EALEEAYPDVPFT 268 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH-HHHHHHHHhCCCc
Confidence 987621 23477888999999999976654 33 566666666 443
No 61
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.55 E-value=1.2e-13 Score=110.61 Aligned_cols=116 Identities=30% Similarity=0.335 Sum_probs=90.3
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..++.+|||+|||+|.+++.+++. + ..+++++|+++.+++.|++++..+++...+.+..+| ..||+|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEE
Confidence 467899999999999988766553 3 357999999999999999999887764323332211 259999
Q ss_pred EEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506 186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE 234 (237)
Q Consensus 186 ~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~ 234 (237)
+.+.... ..+++++.+.|+|||++++......+.+.+.+.+++ +|..++
T Consensus 184 vani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 184 VANILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred EEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEE
Confidence 9876432 357889999999999999888888888888888888 786543
No 62
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.55 E-value=7e-14 Score=108.73 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=92.5
Q ss_pred HHhcC-CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC------
Q 026506 101 IMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG------ 173 (237)
Q Consensus 101 ~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~------ 173 (237)
..... .+++.+|||+|||+|.++..+++..++.++|+++|+++. ....+ +.+.++|+.+..
T Consensus 43 ~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~-v~~i~~D~~~~~~~~~i~ 110 (209)
T PRK11188 43 QQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVG-VDFLQGDFRDELVLKALL 110 (209)
T ss_pred HHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCC-cEEEecCCCChHHHHHHH
Confidence 33444 578899999999999999999998766679999999871 12334 888999987532
Q ss_pred --CCCCCCCCCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506 174 --FPDEFSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES 235 (237)
Q Consensus 174 --~~~~~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~ 235 (237)
+.. +.||+|+.++... ..+++.+.+.|+|||.+++.....+...+++..++..|..+++
T Consensus 111 ~~~~~---~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 111 ERVGD---SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV 187 (209)
T ss_pred HHhCC---CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE
Confidence 222 6899999876211 2468999999999999998665556778888888888888776
Q ss_pred c
Q 026506 236 C 236 (237)
Q Consensus 236 ~ 236 (237)
+
T Consensus 188 ~ 188 (209)
T PRK11188 188 R 188 (209)
T ss_pred E
Confidence 4
No 63
>PRK08317 hypothetical protein; Provisional
Probab=99.55 E-value=3.5e-13 Score=106.93 Aligned_cols=110 Identities=31% Similarity=0.427 Sum_probs=89.3
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
++..+.+.++.+|||+|||+|.++..++...++..+++++|+++.+++.++++... ...++.+...|+....++.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~--- 85 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPFPD--- 85 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCCCC---
Confidence 56677888999999999999999999998875668999999999999999987332 2234888888887544444
Q ss_pred CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeC
Q 026506 180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+.||+|+.. .+++..+++++.+.|+|||.+++..+
T Consensus 86 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 86 GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 689999864 35667799999999999999987654
No 64
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.55 E-value=2.7e-13 Score=108.61 Aligned_cols=122 Identities=28% Similarity=0.311 Sum_probs=97.6
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
.+.+|||+|||+|.++..++... +..+++++|+++.+++.+++++...++.+ +++..+|+.+ .++. +.||+|+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~-~~~~---~~fD~Vi~ 160 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFE-PLPG---GKFDLIVS 160 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhc-cCcC---CceeEEEE
Confidence 45699999999999999999875 45799999999999999999998888765 9999999874 3443 68999998
Q ss_pred eCCCh-------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506 188 DLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES 235 (237)
Q Consensus 188 ~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~ 235 (237)
|+|-. ..+++.+.+.|+|||.+++.... .+.+.+.+.+++ +|..+++
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-DQGEAVRALFEAAGFADVET 239 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-cHHHHHHHHHHhCCCCceEE
Confidence 87611 13567889999999999866543 456777778887 8987765
Q ss_pred c
Q 026506 236 C 236 (237)
Q Consensus 236 ~ 236 (237)
.
T Consensus 240 ~ 240 (251)
T TIGR03534 240 R 240 (251)
T ss_pred E
Confidence 3
No 65
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=1.7e-13 Score=112.66 Aligned_cols=116 Identities=21% Similarity=0.245 Sum_probs=92.1
Q ss_pred ccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC
Q 026506 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (237)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 172 (237)
.|...+.+++.++++++++|||+|||+|.++..+++..+..+.|+++|+++++++.|++++...+.++ +.+..+|..+.
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~ 143 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYG 143 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhc
Confidence 34444557778888899999999999999999999886544689999999999999999999888866 88889997642
Q ss_pred CCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 173 GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 173 ~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+.. ..||+|+++..... ....+.+.|+|||++++..
T Consensus 144 -~~~~--~~fD~Ii~~~g~~~-ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 -VPEF--APYDVIFVTVGVDE-VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred -cccc--CCccEEEECCchHH-hHHHHHHhcCCCCEEEEEe
Confidence 2221 56999998765433 5567889999999988643
No 66
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=1.7e-13 Score=105.83 Aligned_cols=105 Identities=19% Similarity=0.151 Sum_probs=84.3
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
+++.+...++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.++++....++.+ +++...|+.+..++
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~---- 93 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFD---- 93 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcC----
Confidence 566666677889999999999999998875 3689999999999999999988877765 88888888653332
Q ss_pred CCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEEE
Q 026506 180 GLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 180 ~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
+.||+|++... ....+++++.+.|+|||.++++
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 56999986432 2346899999999999996544
No 67
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.54 E-value=1.9e-13 Score=107.70 Aligned_cols=120 Identities=23% Similarity=0.226 Sum_probs=95.2
Q ss_pred CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE--
Q 026506 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-- 187 (237)
Q Consensus 110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-- 187 (237)
.+|||+|||+|..+..+++.. +..+++++|+++++++.+++++...++.+++++...|+....++ +.||+|+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~----~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP----DTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC----CCCCEeehHH
Confidence 379999999999999988875 45789999999999999999998888877799999998644332 57999974
Q ss_pred ---eCCChhchHHHHHhcccCCCEEEEEeCCH---------------HHHHHHHHHHHh-cCcccc
Q 026506 188 ---DLPQPWLAIPSAKKMLKQDGILCSFSPCI---------------EQVQRSCESLRL-NFTGKE 234 (237)
Q Consensus 188 ---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~---------------~~~~~~~~~l~~-~f~~v~ 234 (237)
+.++...+++++.+.|+|||.+++..+.. ....++.+.+.+ +|..++
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVE 141 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 34566679999999999999999765421 124567777777 787654
No 68
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.54 E-value=3e-13 Score=116.18 Aligned_cols=119 Identities=25% Similarity=0.367 Sum_probs=93.5
Q ss_pred ccccccHH--HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506 91 ILYIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (237)
Q Consensus 91 ~~~~~~~~--~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d 168 (237)
.++.++.+ .+...+++.+|++|||+|||+|..+.+++...+ ..+|+++|+++.+++.++++++.++.. +.+..+|
T Consensus 225 ~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D 301 (427)
T PRK10901 225 WVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGD 301 (427)
T ss_pred eEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcC
Confidence 44444444 456678889999999999999999999998863 379999999999999999999988864 6788889
Q ss_pred ccCCC-CCCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCC
Q 026506 169 IQGQG-FPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 169 ~~~~~-~~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
+.+.. +.. .+.||.|++|+|+. .++++.+.+.|||||+++ |+.|
T Consensus 302 ~~~~~~~~~--~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv-ystc 373 (427)
T PRK10901 302 ARDPAQWWD--GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL-YATC 373 (427)
T ss_pred cccchhhcc--cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence 86421 111 15799999998743 147889999999999998 5555
No 69
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.54 E-value=3.6e-14 Score=109.34 Aligned_cols=102 Identities=25% Similarity=0.341 Sum_probs=84.1
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
-+|.+|||+|||.|.++..+|+. +.+|+++|.++..++.|+.++...++. +++....+.+..... ++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~---~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAG---GQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcC---CCccEEE
Confidence 57899999999999999999887 389999999999999999998877754 566666665422222 6899997
Q ss_pred E-----eCCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506 187 L-----DLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 187 ~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
+ +.+++..++..+.+.+||||.+++..+..
T Consensus 130 cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 130 CMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred EhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 4 77899999999999999999999666553
No 70
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.53 E-value=1.2e-13 Score=113.65 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=83.7
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
.++.+|||+|||+|.++..+++. ..+|+++|+++++++.|+++....+....+++..+|+.+..+.. +.||+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~---~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG---RKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc---CCCCEEE
Confidence 46789999999999999888754 36899999999999999988765544345899999986543333 6899997
Q ss_pred E-----eCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506 187 L-----DLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 187 ~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
+ +.+++..+++.+.+.|||||.+++..+.
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 5 4567788999999999999999977654
No 71
>PRK04457 spermidine synthase; Provisional
Probab=99.53 E-value=3.7e-13 Score=108.12 Aligned_cols=123 Identities=22% Similarity=0.181 Sum_probs=93.8
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
.++.+|||+|||+|.++..+++.. +..+++++|+++++++.|++++...+...+++++.+|+.+. +.. ...+||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-l~~-~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-IAV-HRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-HHh-CCCCCCEEE
Confidence 456799999999999999998886 56899999999999999999876544445699999998641 111 125799999
Q ss_pred EeCCC---------hhchHHHHHhcccCCCEEEEEeC-CHHHHHHHHHHHHhcCcc
Q 026506 187 LDLPQ---------PWLAIPSAKKMLKQDGILCSFSP-CIEQVQRSCESLRLNFTG 232 (237)
Q Consensus 187 ~~~~~---------~~~~l~~~~~~L~~gG~l~~~~~-~~~~~~~~~~~l~~~f~~ 232 (237)
+|.-+ ..++++.+.+.|+|||++++... ........++.+++.|..
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~ 197 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEG 197 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCC
Confidence 87522 14689999999999999987432 223456677778776764
No 72
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.53 E-value=3.9e-13 Score=109.51 Aligned_cols=121 Identities=25% Similarity=0.240 Sum_probs=94.9
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
..+|||+|||+|.++..++... +..+++++|+++.+++.|++|+..++..+++++..+|+.+ .++. ..||+|+.|
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~---~~fDlIvsN 189 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAG---QKIDIIVSN 189 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcC---CCccEEEEC
Confidence 3699999999999999999875 4579999999999999999999988876669999999874 3432 479999998
Q ss_pred CCCh------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh--cCccccc
Q 026506 189 LPQP------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTGKES 235 (237)
Q Consensus 189 ~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~--~f~~v~~ 235 (237)
+|-. ..+++.+.+.|+|||.+++-.. ..|...+.+.++. +|..+++
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g-~~q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG-NWQQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHhcCCCceeEE
Confidence 6511 1357788899999999986554 4566677777773 5766544
No 73
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.53 E-value=5.3e-14 Score=95.38 Aligned_cols=90 Identities=29% Similarity=0.455 Sum_probs=72.7
Q ss_pred EEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe----
Q 026506 113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD---- 188 (237)
Q Consensus 113 ldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~---- 188 (237)
||+|||+|..+..+++. +..+++++|+++++++.++++....+ +.+...|+.+.++++ +.||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~---~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPD---NSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-T---T-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcccc---cccccccccccee
Confidence 79999999999999988 45899999999999999999754332 668999998877776 899999864
Q ss_pred -CCChhchHHHHHhcccCCCEEEE
Q 026506 189 -LPQPWLAIPSAKKMLKQDGILCS 211 (237)
Q Consensus 189 -~~~~~~~l~~~~~~L~~gG~l~~ 211 (237)
..+...+++++.+.|||||++++
T Consensus 72 ~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eccCHHHHHHHHHHHcCcCeEEeC
Confidence 34556789999999999999984
No 74
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.52 E-value=1.9e-13 Score=104.76 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=87.3
Q ss_pred hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--------C
Q 026506 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--------F 174 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--------~ 174 (237)
...+.++.+|||+|||+|.++..+++...+.++++++|+++.+ ...+ +.+...|+.+.. .
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCChhHHHHHHHHh
Confidence 3356889999999999999999998887556789999999854 1223 677778876421 2
Q ss_pred CCCCCCCCCEEEEeCCC----------------hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCcccc
Q 026506 175 PDEFSGLADSIFLDLPQ----------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKE 234 (237)
Q Consensus 175 ~~~~~~~~D~v~~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~ 234 (237)
+. ++||+|+.+... ...++..+.+.|+|||++++.........++++.++..|..++
T Consensus 95 ~~---~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~ 167 (188)
T TIGR00438 95 GD---DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVK 167 (188)
T ss_pred CC---CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEE
Confidence 22 579999987421 1457899999999999999876666667788888777665443
No 75
>PLN02476 O-methyltransferase
Probab=99.52 E-value=1.3e-13 Score=110.38 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=93.3
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC---
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--- 176 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--- 176 (237)
+...+...++.+|||+|+++|+.++.++..+++.++++++|.+++..+.|++++++.|+.+++++..+|+.+ .++.
T Consensus 110 L~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e-~L~~l~~ 188 (278)
T PLN02476 110 LAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE-SLKSMIQ 188 (278)
T ss_pred HHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH-HHHHHHh
Confidence 444556677889999999999999999998876789999999999999999999999998789999999875 1111
Q ss_pred -CCCCCCCEEEEeCCC--hhchHHHHHhcccCCCEEEEE
Q 026506 177 -EFSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 177 -~~~~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~ 212 (237)
...+.||+||+|... ...+++.+.+.|+|||.+++-
T Consensus 189 ~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 189 NGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred cccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 112579999999874 467899999999999999844
No 76
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.52 E-value=1.4e-13 Score=113.53 Aligned_cols=127 Identities=21% Similarity=0.271 Sum_probs=96.0
Q ss_pred HHhcCC-CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 101 IMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 101 ~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
++.+.. .++.+|||+|||+|.++..+++.. +..+++++|.++++++.|+++... .+ +++..+|+.+.+++.
T Consensus 105 l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~---~~-i~~i~gD~e~lp~~~--- 176 (340)
T PLN02490 105 LEPADLSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---KE-CKIIEGDAEDLPFPT--- 176 (340)
T ss_pred HhhcccCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc---cC-CeEEeccHHhCCCCC---
Confidence 343433 467899999999999998888876 347899999999999999987542 23 788899987655554
Q ss_pred CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCCH----------------HHHHHHHHHHHh-cCccccc
Q 026506 180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI----------------EQVQRSCESLRL-NFTGKES 235 (237)
Q Consensus 180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~----------------~~~~~~~~~l~~-~f~~v~~ 235 (237)
+.||+|+.. .+++...++++.+.|+|||++++..+.. .+.+++.+.+++ ||..+++
T Consensus 177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 679999864 3456678999999999999998765321 123666677777 7887654
No 77
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.52 E-value=4.8e-13 Score=112.27 Aligned_cols=124 Identities=23% Similarity=0.242 Sum_probs=96.6
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..++.+|||+|||+|.++..++... +..+++++|+|+.+++.|++|+..++. ++++..+|+.+..++. .+.||+|
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~--~~~FDLI 323 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPS--EGKWDII 323 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccccc--CCCccEE
Confidence 3456799999999999999888764 557999999999999999999987774 4899999987533322 1579999
Q ss_pred EEeCCCh------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCcccc
Q 026506 186 FLDLPQP------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKE 234 (237)
Q Consensus 186 ~~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~ 234 (237)
++|+|-- ...++.+.+.|+|||.+++... ..|.+.+.+.+++ +|..++
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~~Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-FDQGAAVRGVLAENGFSGVE 402 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-ccHHHHHHHHHHHCCCcEEE
Confidence 9988620 1346666789999999886654 4677888888888 787665
Q ss_pred c
Q 026506 235 S 235 (237)
Q Consensus 235 ~ 235 (237)
+
T Consensus 403 v 403 (423)
T PRK14966 403 T 403 (423)
T ss_pred E
Confidence 4
No 78
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.51 E-value=4.9e-13 Score=116.70 Aligned_cols=107 Identities=26% Similarity=0.258 Sum_probs=87.7
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
+++.+.+.++.+|||+|||+|..+..++... ..+++++|+|+.+++.|+++.. +...++++..+|+....++.
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~--- 330 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPD--- 330 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCC---
Confidence 5566667788999999999999998888775 4689999999999999998764 33345899999987655554
Q ss_pred CCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEe
Q 026506 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 180 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+.||+|++ +.+++..+++++.+.|+|||++++..
T Consensus 331 ~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 331 NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 67999975 34567789999999999999998764
No 79
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.51 E-value=4.8e-13 Score=110.28 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=101.7
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.+++.++..++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+++++...++.+++++..+|+.+..++
T Consensus 140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--- 214 (306)
T TIGR02716 140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--- 214 (306)
T ss_pred HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC---
Confidence 36667778888999999999999999999885 6689999997 899999999999888887899999999754443
Q ss_pred CCCCCEEEEeC-----CCh--hchHHHHHhcccCCCEEEEEeCCH-----H----------------------HHHHHHH
Q 026506 179 SGLADSIFLDL-----PQP--WLAIPSAKKMLKQDGILCSFSPCI-----E----------------------QVQRSCE 224 (237)
Q Consensus 179 ~~~~D~v~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~~~~-----~----------------------~~~~~~~ 224 (237)
.+|+|++.. ++. ..+++++.+.|+|||++++..... . ..+++.+
T Consensus 215 --~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 292 (306)
T TIGR02716 215 --EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKE 292 (306)
T ss_pred --CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHH
Confidence 369886432 222 357999999999999998773211 0 0246777
Q ss_pred HHHh-cCcccccc
Q 026506 225 SLRL-NFTGKESC 236 (237)
Q Consensus 225 ~l~~-~f~~v~~~ 236 (237)
.+++ ||+++++.
T Consensus 293 ll~~aGf~~v~~~ 305 (306)
T TIGR02716 293 ILESLGYKDVTMV 305 (306)
T ss_pred HHHHcCCCeeEec
Confidence 7888 89887753
No 80
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.51 E-value=6.8e-13 Score=105.38 Aligned_cols=111 Identities=32% Similarity=0.458 Sum_probs=89.1
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
++..+...++.+|||+|||+|.++..++...+...+++++|+++.+++.+++++...+....+.+...|+.+...+.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--- 119 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD--- 119 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC---
Confidence 55566667789999999999999999988864358999999999999999998876555555889999987543333
Q ss_pred CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEe
Q 026506 180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+.||+|+.. .+.....++++.+.|+|||.+++..
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 679999753 3456678999999999999988653
No 81
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.51 E-value=9.4e-13 Score=106.94 Aligned_cols=126 Identities=28% Similarity=0.279 Sum_probs=96.4
Q ss_pred hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 182 (237)
.....++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++. .....++.+..+|+.. .++. +.|
T Consensus 103 ~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~-~~~~---~~f 176 (275)
T PRK09328 103 ALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE-PLPG---GRF 176 (275)
T ss_pred hccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC-cCCC---Cce
Confidence 3445677899999999999999999886 55899999999999999999987 3333458999999863 3332 679
Q ss_pred CEEEEeCCCh-------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506 183 DSIFLDLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF 230 (237)
Q Consensus 183 D~v~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f 230 (237)
|+|+.|+|-. ..+++++.+.|+|||.+++... ..+.+.+.+.+++ +|
T Consensus 177 D~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~~~~~~~~~~l~~~gf 255 (275)
T PRK09328 177 DLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-YDQGEAVRALLAAAGF 255 (275)
T ss_pred eEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-chHHHHHHHHHHhCCC
Confidence 9999886521 1246667799999999986543 3556777777877 78
Q ss_pred ccccc
Q 026506 231 TGKES 235 (237)
Q Consensus 231 ~~v~~ 235 (237)
..+++
T Consensus 256 ~~v~~ 260 (275)
T PRK09328 256 ADVET 260 (275)
T ss_pred ceeEE
Confidence 76654
No 82
>PLN03075 nicotianamine synthase; Provisional
Probab=99.51 E-value=4.4e-13 Score=107.98 Aligned_cols=107 Identities=21% Similarity=0.125 Sum_probs=85.1
Q ss_pred cCCCCCCEEEEEccCccHHHHH-HHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 104 LELVPGCLVLESGTGSGSLTTS-LARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 104 ~~~~~~~~vldiG~G~G~~~~~-~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
+...++.+|+|+|||+|.++.. +++...+.++++++|+++++.+.|++.+.. .++.++++|..+|+.+. .+. .+.
T Consensus 119 ~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~--l~~ 195 (296)
T PLN03075 119 HVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-TES--LKE 195 (296)
T ss_pred hhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-ccc--cCC
Confidence 3334779999999999866544 444455778999999999999999999964 77878899999999852 211 167
Q ss_pred CCEEEEeC------CChhchHHHHHhcccCCCEEEEEe
Q 026506 182 ADSIFLDL------PQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 182 ~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
||+||++. ..+.++++++.+.|+|||.+++=+
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999875 466689999999999999999554
No 83
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.50 E-value=5.1e-13 Score=109.43 Aligned_cols=130 Identities=16% Similarity=0.059 Sum_probs=91.0
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
++..+...++.+|||+|||+|.++..++.. + ...|+++|+++.++..++..-...+....+.+...++.+. +..
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l--p~~-- 186 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL--HEL-- 186 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC--CCC--
Confidence 455566778899999999999998877765 3 3589999999998876543222222223477777777653 221
Q ss_pred CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCCH-----------------------HHHHHHHHHHHh-cC
Q 026506 180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI-----------------------EQVQRSCESLRL-NF 230 (237)
Q Consensus 180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~-----------------------~~~~~~~~~l~~-~f 230 (237)
..||+|++. .+++...++++.+.|+|||.+++..... .+...+...+++ ||
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF 266 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGF 266 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCC
Confidence 479999863 4567789999999999999998642110 023455566777 89
Q ss_pred ccccc
Q 026506 231 TGKES 235 (237)
Q Consensus 231 ~~v~~ 235 (237)
+++++
T Consensus 267 ~~V~i 271 (314)
T TIGR00452 267 ENFRI 271 (314)
T ss_pred eEEEE
Confidence 88765
No 84
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.50 E-value=6.3e-13 Score=109.87 Aligned_cols=130 Identities=18% Similarity=0.054 Sum_probs=93.0
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
+...++..++.+|||+|||+|.++..++.. ++ ..|+++|+++.++..++......+...++.+...|+.+.++ .
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~--- 187 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L--- 187 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c---
Confidence 344556567899999999999999988876 33 57999999999887654433222323348899999876443 2
Q ss_pred CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCC------------H-----------HHHHHHHHHHHh-cC
Q 026506 180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPC------------I-----------EQVQRSCESLRL-NF 230 (237)
Q Consensus 180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~------------~-----------~~~~~~~~~l~~-~f 230 (237)
+.||+|++. ..++...++++.+.|+|||.+++-... . .....+...|++ ||
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF 267 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGF 267 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCC
Confidence 779999863 356678999999999999999854211 0 023456667777 78
Q ss_pred ccccc
Q 026506 231 TGKES 235 (237)
Q Consensus 231 ~~v~~ 235 (237)
+.+++
T Consensus 268 ~~i~~ 272 (322)
T PRK15068 268 KDVRI 272 (322)
T ss_pred ceEEE
Confidence 87764
No 85
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.50 E-value=7.7e-13 Score=105.71 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=89.8
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
++.+|||+|||+|.++..++... +..+++++|+|+.+++.|++|+..++ .++..+|+.+ .++....+.||+|+.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~-~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD-ALPTALRGRVDILAA 159 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh-hcchhcCCCEeEEEE
Confidence 34589999999999999998875 44689999999999999999988765 3678888764 222111257999999
Q ss_pred eCCCh-------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 188 DLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 188 ~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
|+|-. ..+++.+.+.|+|||++++... ..+..++.+.+++ +|.
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~~~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-ERQAPLAVEAFARAGLI 234 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-cchHHHHHHHHHHCCCC
Confidence 98621 1456677899999999996654 4567888888887 654
No 86
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.50 E-value=4.1e-13 Score=107.87 Aligned_cols=103 Identities=21% Similarity=0.224 Sum_probs=83.8
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.++..+...++.+|||+|||+|.++..++... +..+++++|+++.+++.|+++ + +++..+|+.+. .+.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~-~~~~~~d~~~~-~~~-- 87 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------G-VDARTGDVRDW-KPK-- 87 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------C-CcEEEcChhhC-CCC--
Confidence 36777777888999999999999999998875 557999999999999999762 2 67788888642 232
Q ss_pred CCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeC
Q 026506 179 SGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 179 ~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+.||+|+++. +++..+++++.+.|||||.+++..+
T Consensus 88 -~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 88 -PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred -CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 6899998753 5667789999999999999987643
No 87
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.49 E-value=5.8e-13 Score=105.98 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=83.1
Q ss_pred CCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
.++.+|||+|||+|..+..+++.+ .+..+++++|+++++++.|++++...+...++++..+|+.+..+ ..+|+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~v 126 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASMV 126 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCEE
Confidence 577899999999999999988875 35689999999999999999998776655558999999975332 348887
Q ss_pred EEeCC-------ChhchHHHHHhcccCCCEEEEEeC
Q 026506 186 FLDLP-------QPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 186 ~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++... +...+++++.+.|+|||.+++..+
T Consensus 127 ~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 127 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 75432 234689999999999999997754
No 88
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.49 E-value=7.6e-14 Score=107.63 Aligned_cols=111 Identities=26% Similarity=0.328 Sum_probs=89.7
Q ss_pred hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCC-CCCC
Q 026506 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFP-DEFS 179 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~-~~~~ 179 (237)
........+|||||+++|+.++.++..++.+++++++|.+++..+.|+++++..|+.++++++.+|+.+ ..+. ....
T Consensus 40 l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 40 LVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp HHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTT
T ss_pred HHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCC
Confidence 334456689999999999999999998877799999999999999999999999988889999999874 1111 1112
Q ss_pred CCCCEEEEeCCC--hhchHHHHHhcccCCCEEEEEe
Q 026506 180 GLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 180 ~~~D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+.||+||+|... +...++.+.+.|+|||.+++-.
T Consensus 120 ~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 120 GQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp TSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred CceeEEEEcccccchhhHHHHHhhhccCCeEEEEcc
Confidence 579999999863 4467899999999999999653
No 89
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.3e-12 Score=109.27 Aligned_cols=134 Identities=29% Similarity=0.409 Sum_probs=103.2
Q ss_pred CcccccccccHHH--HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 87 HRTQILYIADISF--VIMYLELVPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
.....++.++.+. ....+++.+|++|||+++++|+-+.+++..+.. ...|+++|.++.+++..++++++.|+.+ +.
T Consensus 133 ~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~ 211 (355)
T COG0144 133 FAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VI 211 (355)
T ss_pred hhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eE
Confidence 3445556665553 456789999999999999999999999999854 3456999999999999999999999988 77
Q ss_pred EEEccccCC--CCCCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506 164 VGVRDIQGQ--GFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 164 ~~~~d~~~~--~~~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+...|.... .... ...||.|++|+|+. .++|..+.+.|||||+|+ |++
T Consensus 212 ~~~~d~~~~~~~~~~--~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV-YST 288 (355)
T COG0144 212 VVNKDARRLAELLPG--GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV-YST 288 (355)
T ss_pred EEecccccccccccc--cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEc
Confidence 777776531 1111 12599999998854 257999999999999999 888
Q ss_pred CH---HHHHHHHH
Q 026506 215 CI---EQVQRSCE 224 (237)
Q Consensus 215 ~~---~~~~~~~~ 224 (237)
|+ +..+...+
T Consensus 289 CS~~~eENE~vV~ 301 (355)
T COG0144 289 CSLTPEENEEVVE 301 (355)
T ss_pred cCCchhcCHHHHH
Confidence 86 33444443
No 90
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.48 E-value=5.6e-13 Score=116.33 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=95.8
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
++.+|||+|||+|.+++.++... +..+++++|+|+.+++.|++++..+++.+++.+..+|+.+ .++. +.||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~---~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEK---QKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcC---CCccEEEE
Confidence 45799999999999999988875 5579999999999999999999888876669999999863 3333 57999999
Q ss_pred eCCCh-------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccccc
Q 026506 188 DLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGKES 235 (237)
Q Consensus 188 ~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v~~ 235 (237)
|+|-- ..+++.+.+.|+|||.+++... ..+.+.+.+.+.+ +|..+++
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-CchHHHHHHHHHhcCCCceEE
Confidence 87510 1246678889999999986543 4567777777777 7765543
No 91
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=5e-13 Score=107.13 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=87.7
Q ss_pred HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (237)
Q Consensus 97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 176 (237)
...+++.+...++.+|||+|||+|.++..++.. ..+++++|+++.+++.++++.. . ..+..+|+...+++.
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~-~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----A-DHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----C-CCEEEcCcccCcCCC
Confidence 334566666666789999999999998877654 3789999999999999988632 1 456788887655554
Q ss_pred CCCCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHH
Q 026506 177 EFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCES 225 (237)
Q Consensus 177 ~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~ 225 (237)
+.||+|+.+. +++..++.++.+.|+|||.+++..+....+.++.+.
T Consensus 102 ---~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~ 152 (251)
T PRK10258 102 ---ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQA 152 (251)
T ss_pred ---CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHH
Confidence 6899998754 355578999999999999999776554444444433
No 92
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.47 E-value=7.3e-13 Score=102.07 Aligned_cols=104 Identities=20% Similarity=0.186 Sum_probs=80.4
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
++..+...++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++....++. +.....|+....++
T Consensus 22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~---- 92 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN---- 92 (195)
T ss_pred HHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc----
Confidence 556666666789999999999999998875 368999999999999999988776753 66677776532222
Q ss_pred CCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEEE
Q 026506 180 GLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 180 ~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
+.||+|+.... ....+++++.+.|+|||+++++
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57999976432 2246899999999999996655
No 93
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=8.5e-13 Score=106.81 Aligned_cols=115 Identities=29% Similarity=0.350 Sum_probs=90.7
Q ss_pred EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (237)
Q Consensus 111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 190 (237)
+|||+|||||.+++.++... +..+|+++|+|+.+++.|++|+..+++.+ +.+...|++. ... ++||+|+.|+|
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~-~~~~~~dlf~-~~~----~~fDlIVsNPP 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVR-VLVVQSDLFE-PLR----GKFDLIVSNPP 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCcc-EEEEeeeccc-ccC----CceeEEEeCCC
Confidence 89999999999999999885 55799999999999999999999999844 6666668763 333 58999999886
Q ss_pred ----C------------h--------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-c-Cccc
Q 026506 191 ----Q------------P--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N-FTGK 233 (237)
Q Consensus 191 ----~------------~--------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~-f~~v 233 (237)
. | ..++..+.+.|+|||.+++... ..+.+.+.+.+.+ + |..+
T Consensus 186 Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g-~~q~~~v~~~~~~~~~~~~v 259 (280)
T COG2890 186 YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG-LTQGEAVKALFEDTGFFEIV 259 (280)
T ss_pred CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-CCcHHHHHHHHHhcCCceEE
Confidence 1 0 1357788999999999886654 3456777777777 6 4433
No 94
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.47 E-value=5.5e-13 Score=100.69 Aligned_cols=106 Identities=23% Similarity=0.274 Sum_probs=89.2
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
++....+.+..+|.|+|||+|..+..++++. |...++++|.|++|++.|+++ ..+ .++..+|+.+ +...
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~--w~p~-- 90 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRT--WKPE-- 90 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhh--cCCC--
Confidence 6667777888999999999999999999997 668999999999999999875 234 8889999975 3321
Q ss_pred CCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeCCH
Q 026506 180 GLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 180 ~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
...|++|.|. |++.++|.++...|.|||.|.+-.|..
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 5789998875 566789999999999999999888765
No 95
>PRK00811 spermidine synthase; Provisional
Probab=99.47 E-value=1e-12 Score=106.81 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=94.5
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C--CCcEEEEEccccCCCCCCCCCCCCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V--SSFVTVGVRDIQGQGFPDEFSGLAD 183 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~~~~~~~~~~~D 183 (237)
.+.+||++|||.|..+..++++. +..+|+++|+++++++.|++++...+ . +.+++++.+|+... +.. ..++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-l~~-~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-VAE-TENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-Hhh-CCCccc
Confidence 45799999999999999888752 44789999999999999999886432 1 45689999998751 111 226899
Q ss_pred EEEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506 184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES 235 (237)
Q Consensus 184 ~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~ 235 (237)
+|++|..++ .++++.+.+.|+|||++++.... .....++.+.+++-|..+..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~ 217 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRP 217 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEE
Confidence 999987544 35678999999999999976432 34466677777777877654
No 96
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.46 E-value=1.6e-12 Score=108.03 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=86.7
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.++..+......+|||+|||+|.++..+++.. +..+++++|+++.+++.++++++.+++. .++...|... .. .
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~-~~-~-- 259 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFS-DI-K-- 259 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccc-cc-C--
Confidence 35565655556699999999999999998874 5578999999999999999999988764 4566777753 22 2
Q ss_pred CCCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCC
Q 026506 179 SGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 179 ~~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
+.||+|++++|-+ +.+++.+.+.|+|||.++++...
T Consensus 260 -~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 260 -GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred -CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 6799999987632 46789999999999999877654
No 97
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=2.3e-12 Score=105.73 Aligned_cols=113 Identities=25% Similarity=0.252 Sum_probs=88.4
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
..+|||+|||+|.++..++... +..+++++|+|+.+++.|++++..+++.+++++..+|+.+ .++. +.||+|++|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~---~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPG---RRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCC---CCccEEEEC
Confidence 3689999999999999998875 5579999999999999999999988887679999999863 3433 579999998
Q ss_pred CCCh------------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506 189 LPQP------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (237)
Q Consensus 189 ~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 228 (237)
+|-. ..+++.+.+.|+|||.+++-.... + +.+.+.+.+
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~-~~~~~~~~~ 276 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-R-VHLEEAYPD 276 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-H-HHHHHHHhh
Confidence 6521 235788889999999999755432 2 235455544
No 98
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.45 E-value=1.7e-12 Score=102.07 Aligned_cols=108 Identities=21% Similarity=0.310 Sum_probs=85.4
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
++..+...++.+|||+|||+|..+..+++..+...+++++|+++.+++.++++.. ...++++..+|+.+..++.
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~--- 104 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFED--- 104 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCC---
Confidence 4455556688999999999999999998886332689999999999999998765 2234888889987644433
Q ss_pred CCCCEEEEe-----CCChhchHHHHHhcccCCCEEEEEe
Q 026506 180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 180 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+.||+|+.. .+++..+++++.+.|+|||++++..
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 679998753 4566788999999999999998754
No 99
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.45 E-value=1.9e-12 Score=104.15 Aligned_cols=105 Identities=23% Similarity=0.285 Sum_probs=84.8
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.++..+...++.+|||+|||+|.++..++... +..+++++|+++.+++.++++. .+ +.+..+|+... .+.
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~-~~~~~~d~~~~-~~~-- 91 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PD-CQFVEADIASW-QPP-- 91 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CC-CeEEECchhcc-CCC--
Confidence 46667777889999999999999999998875 5579999999999999998863 23 77888888642 222
Q ss_pred CCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEEeC
Q 026506 179 SGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 179 ~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
..||+|+.+. +++..+++++.+.|+|||.+++..+
T Consensus 92 -~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 92 -QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred -CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 5799998754 3555789999999999999987654
No 100
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.43 E-value=3.9e-12 Score=97.70 Aligned_cols=113 Identities=27% Similarity=0.432 Sum_probs=93.0
Q ss_pred EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC---CCCCCCCCCCCCEEEE
Q 026506 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDEFSGLADSIFL 187 (237)
Q Consensus 111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~~~D~v~~ 187 (237)
.+||||||.|.++..+|... |...++|+|++...+..+.+++...++.| +.+..+|+.. .-+++ +.+|.|++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~---~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPP---GSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTT---TSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccC---CchheEEE
Confidence 99999999999999999985 77999999999999999999999889888 9999999875 12233 78999999
Q ss_pred eCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506 188 DLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (237)
Q Consensus 188 ~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 228 (237)
+.|+|| ++++.+.+.|+|||.+.+.+......+.+++.+.+
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 999886 47999999999999999999988888888888887
No 101
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.41 E-value=5.5e-13 Score=101.72 Aligned_cols=130 Identities=19% Similarity=0.152 Sum_probs=102.0
Q ss_pred HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccccC--CCCCCC
Q 026506 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV-SSFVTVGVRDIQG--QGFPDE 177 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~--~~~~~~ 177 (237)
+....++.|.+|||.+.|-|+.++..+++ ++.+|+.+|-+|+.++.|+-|-...++ ...++++.+|..+ ..+++
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D- 203 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDD- 203 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCc-
Confidence 34556778999999999999999887776 446999999999999999876543332 2237889999876 45555
Q ss_pred CCCCCCEEEEeCCCh--------hchHHHHHhcccCCCEEEEEeCCHH-------HHHHHHHHHHh-cCccccc
Q 026506 178 FSGLADSIFLDLPQP--------WLAIPSAKKMLKQDGILCSFSPCIE-------QVQRSCESLRL-NFTGKES 235 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~-------~~~~~~~~l~~-~f~~v~~ 235 (237)
..||+|++|+|.. .++..++++.|+|||+++-|..... ....+++.|++ ||..|+.
T Consensus 204 --~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 204 --ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred --cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 7899999999843 3578899999999999998865433 35888999999 9986653
No 102
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.41 E-value=6.2e-12 Score=101.93 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=82.8
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAP--TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
.+..+|||+|||+|.++..++..... ...++++|+|+.+++.|+++. .+ +.+..+|+.+.+++. +.||+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~-~~~~~~d~~~lp~~~---~sfD~ 154 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQ-VTFCVASSHRLPFAD---QSLDA 154 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CC-CeEEEeecccCCCcC---CceeE
Confidence 45678999999999999998877532 247999999999999998752 23 778888887655555 78999
Q ss_pred EEEeCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHH
Q 026506 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCES 225 (237)
Q Consensus 185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~ 225 (237)
|+.... + ..++++.+.|||||+++++.|....+.++.+.
T Consensus 155 I~~~~~-~-~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 155 IIRIYA-P-CKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred EEEecC-C-CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 986443 2 36789999999999999998876555444333
No 103
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.40 E-value=1.5e-12 Score=103.14 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=91.5
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC--
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-- 177 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 177 (237)
+...+...+..+|||+|++.|+.++.++..+++.++++++|.+++..+.|+++++..|+.+++++..+|+.+ .++..
T Consensus 71 L~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e-~L~~l~~ 149 (247)
T PLN02589 71 LNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP-VLDQMIE 149 (247)
T ss_pred HHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH-HHHHHHh
Confidence 333445566789999999999999999998877789999999999999999999999988889999999875 12110
Q ss_pred ---CCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEE
Q 026506 178 ---FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 178 ---~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
..+.||+||+|.. .+..+++.+.+.|+|||.+++-
T Consensus 150 ~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 150 DGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 1257999999875 3346788999999999998843
No 104
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=6.2e-12 Score=102.67 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=78.1
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.+++++...++ + +++...|+....+ . +.||+|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~-~---~~fD~I~ 189 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASI-Q---EEYDFIL 189 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccc-c---CCccEEE
Confidence 34569999999999999888875 36899999999999999999888776 3 8888888764333 2 6899998
Q ss_pred EeCC-------ChhchHHHHHhcccCCCEEEEEe
Q 026506 187 LDLP-------QPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 187 ~~~~-------~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.... ....+++++.+.|+|||+++++.
T Consensus 190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6432 23468999999999999976553
No 105
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.39 E-value=1.4e-11 Score=106.39 Aligned_cols=127 Identities=26% Similarity=0.297 Sum_probs=94.0
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC--C
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--E 177 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~ 177 (237)
++..+...++.+|||+|||+|.+++.++... .+++++|+++++++.|++++..+++.+ +++..+|+.+. +.. .
T Consensus 289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~-l~~~~~ 363 (443)
T PRK13168 289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEED-FTDQPW 363 (443)
T ss_pred HHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHh-hhhhhh
Confidence 5566677788999999999999999988773 689999999999999999999888876 99999998642 111 0
Q ss_pred CCCCCCEEEEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCccc
Q 026506 178 FSGLADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTGK 233 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~~v 233 (237)
....||+|++|+|.. .+.++.+.+ ++|++.+++.. ...++.+-+..|.+ +|.-.
T Consensus 364 ~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~~L~~~gY~l~ 420 (443)
T PRK13168 364 ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSC-NPATLARDAGVLVEAGYRLK 420 (443)
T ss_pred hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHHHHhhCCcEEE
Confidence 115699999999843 345544444 68887776444 34556666666655 66533
No 106
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.39 E-value=4.6e-12 Score=106.10 Aligned_cols=182 Identities=18% Similarity=0.248 Sum_probs=113.3
Q ss_pred CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE--EeccCcEE-EEECCCHHHHhhhcCCc-
Q 026506 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV--FSNKGGFV-YLLAPTPELWTLVLSHR- 88 (237)
Q Consensus 13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~- 88 (237)
...|++||||.+.+..+ ||.|..|+.|..+.|..... +|... ....|++. |...|.... ..++..
T Consensus 76 v~~~~vGdrV~~~~~~~--------cg~c~~c~~g~~~~c~~~~~-~g~~~~~~~~~G~~aey~~v~~~~~--~~~P~~l 144 (343)
T PRK09880 76 SSGLKEGQTVAINPSKP--------CGHCKYCLSHNENQCTTMRF-FGSAMYFPHVDGGFTRYKVVDTAQC--IPYPEKA 144 (343)
T ss_pred CccCCCCCEEEECCCCC--------CcCChhhcCCChhhCCCcce-eecccccCCCCCceeeeEEechHHe--EECCCCC
Confidence 35799999999987666 89999999998777763211 12100 01245555 444443221 112211
Q ss_pred ----ccccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 026506 89 ----TQILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (237)
Q Consensus 89 ----~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i 162 (237)
.....+...+. .+......++++||..|+|+ |.++.++++..+ ..+++++|.+++.++.+++ +|.+..+
T Consensus 145 ~~~~aa~~~~~~~a~~al~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi 219 (343)
T PRK09880 145 DEKVMAFAEPLAVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLV 219 (343)
T ss_pred CHHHHHhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEe
Confidence 11222322222 34445566899999999988 888888888863 3579999999999998876 4654323
Q ss_pred EEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 163 TVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 163 ~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+....++.+ +... .+.+|+||.....+ ..++.+.+.|++||+++.++.
T Consensus 220 ~~~~~~~~~--~~~~-~g~~D~vid~~G~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 220 NPQNDDLDH--YKAE-KGYFDVSFEVSGHP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred cCCcccHHH--Hhcc-CCCCCEEEECCCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence 322223221 1111 14599987655543 478899999999999998763
No 107
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.38 E-value=5.4e-12 Score=92.83 Aligned_cols=117 Identities=27% Similarity=0.343 Sum_probs=92.0
Q ss_pred CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE---
Q 026506 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF--- 186 (237)
Q Consensus 110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~--- 186 (237)
.+|||+|||.|.+...+++. +-....+++|.++.+++.|+..+++.+.++.|.+.+.|+.+..+.. ++||+|.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~---~qfdlvlDKG 144 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLS---GQFDLVLDKG 144 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccc---cceeEEeecC
Confidence 39999999999999998876 3345699999999999999999999999888999999998644444 7788864
Q ss_pred ------EeCC----ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 187 ------LDLP----QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 187 ------~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
+++. ....++..+.+.|+|||++++.+ |.-...++.+...+ +|.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS-CN~T~dELv~~f~~~~f~ 199 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS-CNFTKDELVEEFENFNFE 199 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe-cCccHHHHHHHHhcCCeE
Confidence 1211 11346888899999999999554 66667778777776 554
No 108
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.37 E-value=2.1e-12 Score=100.38 Aligned_cols=97 Identities=24% Similarity=0.318 Sum_probs=76.7
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEccccCCCCCCCCCCCCC
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-----FVTVGVRDIQGQGFPDEFSGLAD 183 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~~~~D 183 (237)
|.+|||+|||+|.++..+++. .+.|+++|.++.+++.|++........+ ++++...|+.. .. +.||
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~--~~----~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG--LT----GKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh--cc----cccc
Confidence 588999999999999999988 3799999999999999999854433222 25555555543 22 5699
Q ss_pred EEEE-----eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 184 SIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 184 ~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.|++ +..++.++++.+.+.|||||++++-..
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 9975 566788899999999999999995543
No 109
>PRK06922 hypothetical protein; Provisional
Probab=99.37 E-value=7.7e-12 Score=109.76 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=83.0
Q ss_pred hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCCCCCC
Q 026506 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEFSG 180 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~ 180 (237)
.++..++.+|||+|||+|..+..++... +..+++++|+++.+++.|+++....+ ..+++..+|..+.+ +++ +
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fed---e 486 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEK---E 486 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCC---C
Confidence 4455578999999999999998888775 56899999999999999998865544 23778888886532 333 6
Q ss_pred CCCEEEEeCC------------------ChhchHHHHHhcccCCCEEEEEeC
Q 026506 181 LADSIFLDLP------------------QPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 181 ~~D~v~~~~~------------------~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.||+|+.+.. ....+++++.+.|||||.+++...
T Consensus 487 SFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 487 SVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred CEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8999986521 224679999999999999998754
No 110
>PLN02366 spermidine synthase
Probab=99.36 E-value=2.3e-11 Score=99.54 Aligned_cols=126 Identities=17% Similarity=0.248 Sum_probs=93.0
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccCCCCCCCCCCCCC
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPDEFSGLAD 183 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~~D 183 (237)
..+.+||++|+|.|.++..++++ .+..+++.+|+++..++.+++.+...+ . +.+++++.+|.... +.....+.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~-l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEF-LKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHH-HhhccCCCCC
Confidence 44689999999999999988876 344789999999999999999876432 2 34699999997641 1111126799
Q ss_pred EEEEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcC-cccc
Q 026506 184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNF-TGKE 234 (237)
Q Consensus 184 ~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f-~~v~ 234 (237)
+|++|..++ .++++.+.+.|+|||+++..+.. ......+.+.+++.| ..+.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~ 232 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVN 232 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCcee
Confidence 999987653 25789999999999999864332 344566777777767 3443
No 111
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.35 E-value=3e-12 Score=116.03 Aligned_cols=119 Identities=20% Similarity=0.150 Sum_probs=91.3
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
.++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|++.+++. +++++..+|+.+. +.. ..+.||+|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l~~-~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-LKE-AREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-HHH-cCCCcCEE
Confidence 35789999999999999988875 4468999999999999999999999886 4699999998741 111 12679999
Q ss_pred EEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cC
Q 026506 186 FLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF 230 (237)
Q Consensus 186 ~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f 230 (237)
++|+|.. ..++..+.+.|+|||.+++. .+........+.+.+ +|
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~-~~~~~~~~~~~~~~~~g~ 673 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS-NNKRGFKMDEEGLAKLGL 673 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE-eCCccCChhHHHHHhCCC
Confidence 9998831 23677889999999998754 444444444566655 44
No 112
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.35 E-value=1.4e-12 Score=89.70 Aligned_cols=91 Identities=24% Similarity=0.354 Sum_probs=69.1
Q ss_pred EEEEccCccHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeC
Q 026506 112 VLESGTGSGSLTTSLARAV--APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL 189 (237)
Q Consensus 112 vldiG~G~G~~~~~~~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~ 189 (237)
|||+|||+|..+..+++.+ ++..+++++|+++++++.++++....+. .+++.+.|+.+..... +.||+|+...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~---~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSD---GKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHS---SSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccC---CCeeEEEEcC
Confidence 7999999999999999886 3347999999999999999999877655 3889999997633333 6899998832
Q ss_pred C-----C---hhchHHHHHhcccCCC
Q 026506 190 P-----Q---PWLAIPSAKKMLKQDG 207 (237)
Q Consensus 190 ~-----~---~~~~l~~~~~~L~~gG 207 (237)
. . ...+++++.+.|+|||
T Consensus 76 ~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 2 1 1357999999999997
No 113
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.35 E-value=1.7e-11 Score=99.25 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=89.7
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
+.+||++|||+|.++..+++.. +..+++++|+++++++.+++++...+ . ..++++..+|..+ .+. ...+.||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~-~l~-~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK-FLA-DTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH-HHH-hCCCCccEE
Confidence 4599999999999988887763 35789999999999999999875432 1 2347888888754 111 112689999
Q ss_pred EEeCCCh---------hchHHHHHhcccCCCEEEEEeCC----HHHHHHHHHHHHhcCccccc
Q 026506 186 FLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTGKES 235 (237)
Q Consensus 186 ~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~~----~~~~~~~~~~l~~~f~~v~~ 235 (237)
++|.+.+ .++++.+.+.|+|||++++.+.. ......+.+.+++.|..+..
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~ 212 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEY 212 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEE
Confidence 9987532 35678999999999999976543 23345555566666887754
No 114
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.35 E-value=6.4e-12 Score=102.31 Aligned_cols=118 Identities=22% Similarity=0.204 Sum_probs=97.7
Q ss_pred cccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-c
Q 026506 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-D 168 (237)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d 168 (237)
..+.|..+..++..+.+++|+.|||-.||||++.+..... +.+++|.|++..+++-|+.|++..++.+ ..+... |
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~D 254 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLD 254 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecc
Confidence 4455666666888899999999999999999999776654 4799999999999999999999998777 555544 9
Q ss_pred ccCCCCCCCCCCCCCEEEEeCCC--------------hhchHHHHHhcccCCCEEEEEeC
Q 026506 169 IQGQGFPDEFSGLADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 169 ~~~~~~~~~~~~~~D~v~~~~~~--------------~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+...+++. ..+|.|+.|+|- ..++++.+.+.|++||++++.+|
T Consensus 255 a~~lpl~~---~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 255 ATNLPLRD---NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccCCCCC---CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 88766654 469999999871 13579999999999999999998
No 115
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.35 E-value=2.9e-13 Score=92.81 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=60.0
Q ss_pred EEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe----
Q 026506 113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD---- 188 (237)
Q Consensus 113 ldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~---- 188 (237)
||+|||+|.++..+++.. +..+++++|+|+.+++.+++++......+ ......+..+. ......+.||+|+..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDL-FDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS----CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCCh-hhcccccccceehhhhhHh
Confidence 799999999999999886 56899999999999999988887766443 33333333221 111111589999853
Q ss_pred -CCChhchHHHHHhcccCCCEE
Q 026506 189 -LPQPWLAIPSAKKMLKQDGIL 209 (237)
Q Consensus 189 -~~~~~~~l~~~~~~L~~gG~l 209 (237)
.++...+++++.+.|+|||+|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 356668999999999999986
No 116
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.35 E-value=1.2e-11 Score=104.58 Aligned_cols=119 Identities=20% Similarity=0.115 Sum_probs=86.6
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCC--CCCCCCCCCCC
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQ--GFPDEFSGLAD 183 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~--~~~~~~~~~~D 183 (237)
.++.+|||+|||+|.+++..+. ++..+|+++|+++.+++.|++|+..+++. .++++..+|+.+. .+.. ..+.||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-cCCCCC
Confidence 4678999999999999876553 34569999999999999999999999885 3589999998751 1110 125799
Q ss_pred EEEEeCCCh--------------hchHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh
Q 026506 184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL 228 (237)
Q Consensus 184 ~v~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~ 228 (237)
+|++|+|.. ..++..+.+.|+|||.++..+-+. -+.+.+.+.+.+
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 999998842 134556789999999999665221 223444444443
No 117
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.34 E-value=2.2e-11 Score=96.59 Aligned_cols=106 Identities=22% Similarity=0.248 Sum_probs=83.4
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
..+.+|||+|||+|.++..++... +..+++++|+++.+++.++++.. . ++.+..+|+.+..++. +.||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~-~~~~~~~d~~~~~~~~---~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----E-NVQFICGDAEKLPLED---SSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----C-CCeEEecchhhCCCCC---CceeEEE
Confidence 345799999999999999998875 55789999999999999988643 2 3788889987655444 6799998
Q ss_pred EeC-----CChhchHHHHHhcccCCCEEEEEeCCHHHHHH
Q 026506 187 LDL-----PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (237)
Q Consensus 187 ~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~ 221 (237)
.+. .++..+++++.+.|+|||.+++..+......+
T Consensus 104 ~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~ 143 (240)
T TIGR02072 104 SNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHE 143 (240)
T ss_pred EhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHH
Confidence 753 35567899999999999999987655444333
No 118
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.33 E-value=6.2e-12 Score=94.50 Aligned_cols=123 Identities=24% Similarity=0.173 Sum_probs=85.9
Q ss_pred hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 182 (237)
.+....-.++||+|||.|.++..++.+. .+++++|+++.+++.|++++.. .++ +++...|+.+ .+|. ++|
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~-V~~~~~dvp~-~~P~---~~F 107 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPH-VEWIQADVPE-FWPE---GRF 107 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SS-EEEEES-TTT----S---S-E
T ss_pred hcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCC-eEEEECcCCC-CCCC---CCe
Confidence 3555556799999999999999999885 6899999999999999998753 345 9999999974 4555 889
Q ss_pred CEEEEeCC--------ChhchHHHHHhcccCCCEEEEEeCCHHH---------HHHHHHHHHhcCccccc
Q 026506 183 DSIFLDLP--------QPWLAIPSAKKMLKQDGILCSFSPCIEQ---------VQRSCESLRLNFTGKES 235 (237)
Q Consensus 183 D~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~~~~---------~~~~~~~l~~~f~~v~~ 235 (237)
|+|++.-- .-..++..+...|+|||.+++-...... .+.+.+.+.+.+.+|+.
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~ 177 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVER 177 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEE
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeE
Confidence 99986421 2235788999999999999976543322 35555666666666553
No 119
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.33 E-value=2.3e-11 Score=102.83 Aligned_cols=103 Identities=23% Similarity=0.311 Sum_probs=81.3
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.++..+.+.++.+|||+|||+|.++..+++.. ..+|+++|+|+++++.|+++.. +. + +++...|..+ + .
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~-v~~~~~D~~~--l-~-- 226 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-P-VEIRLQDYRD--L-N-- 226 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-e-EEEEECchhh--c-C--
Confidence 35567788999999999999999999888774 3689999999999999999874 22 2 7777788753 2 2
Q ss_pred CCCCCEEEEeC-----C--ChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDL-----P--QPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~-----~--~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+.||.|+... + ....+++.+.+.|||||++++..
T Consensus 227 -~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 227 -GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred -CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 6799987532 1 22468999999999999998754
No 120
>PRK01581 speE spermidine synthase; Validated
Probab=99.33 E-value=2.3e-11 Score=100.29 Aligned_cols=123 Identities=21% Similarity=0.181 Sum_probs=87.4
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH--H---HcC-CCCcEEEEEccccCCCCCCCCCCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF--E---RTG-VSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~--~---~~~-~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
...+||++|||.|..+..+++. .+..+++++|+++++++.|++.. . ... -+.++++..+|+.+ +.....+.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--fL~~~~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--FLSSPSSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH--HHHhcCCC
Confidence 3469999999999988777775 34579999999999999999731 1 111 13569999999975 21112267
Q ss_pred CCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEeCCHHHH----HHHHHHHHhcCccc
Q 026506 182 ADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQV----QRSCESLRLNFTGK 233 (237)
Q Consensus 182 ~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~----~~~~~~l~~~f~~v 233 (237)
||+|++|.+++ .++++.+.+.|+|||++++.+.+.... ..+.+.+++.|..+
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v 292 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTV 292 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence 99999998765 247899999999999998775443322 33455566544433
No 121
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.32 E-value=3.5e-11 Score=91.35 Aligned_cols=105 Identities=21% Similarity=0.179 Sum_probs=79.2
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
+++..+..++.++||+|||.|..+..++++ +-.|+++|.|+..++.+++.++..+++ ++....|+.+..++
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~---- 92 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP---- 92 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T----
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc----
Confidence 455556566789999999999999999987 478999999999999999888877765 88899998764443
Q ss_pred CCCCEEEEeC-------CChhchHHHHHhcccCCCEEEEEe
Q 026506 180 GLADSIFLDL-------PQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 180 ~~~D~v~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+.||+|+... +.....++++...++|||++++..
T Consensus 93 ~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 93 EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 5799987532 222357888999999999987643
No 122
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.31 E-value=4e-11 Score=92.21 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=76.3
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
.++.+|||+|||+|.+++.++... ..+|+++|.++++++.+++|++.++..+ +++..+|+.+ .++. ....||+|+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~-~l~~-~~~~fDlV~ 126 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALS-FLAQ-PGTPHNVVF 126 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHH-HHhh-cCCCceEEE
Confidence 467899999999999998655542 4799999999999999999999888765 9999999874 2221 114699999
Q ss_pred EeCCChhch----HHHHHh--cccCCCEEEEEeC
Q 026506 187 LDLPQPWLA----IPSAKK--MLKQDGILCSFSP 214 (237)
Q Consensus 187 ~~~~~~~~~----l~~~~~--~L~~gG~l~~~~~ 214 (237)
+|+|-.... ++.+.. .|+|++.+++-..
T Consensus 127 ~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPFRKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 999933223 333333 2577887775544
No 123
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=99.29 E-value=3.1e-11 Score=99.63 Aligned_cols=113 Identities=31% Similarity=0.506 Sum_probs=94.5
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC-C
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-F 178 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~ 178 (237)
.+..+++++|.+|||+++.+|+-+.++|..+...+.|++.|.+.+++...++++.++|+.+ ..+...|..+ ++.. .
T Consensus 233 pv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~e--f~~~~~ 309 (460)
T KOG1122|consen 233 PVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGRE--FPEKEF 309 (460)
T ss_pred eeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccc--cccccc
Confidence 4456789999999999999999999999999888999999999999999999999999887 5556666653 4321 2
Q ss_pred CCCCCEEEEeCCCh---------------------------hchHHHHHhcccCCCEEEEEeCCH
Q 026506 179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 179 ~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
.++||.|++|+|+. .++|.++.+++++||+|+ |++|.
T Consensus 310 ~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLV-YSTCS 373 (460)
T KOG1122|consen 310 PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLV-YSTCS 373 (460)
T ss_pred CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEE-EEeee
Confidence 24799999998844 257888999999999998 88876
No 124
>PLN02823 spermine synthase
Probab=99.29 E-value=4.9e-11 Score=98.64 Aligned_cols=126 Identities=18% Similarity=0.145 Sum_probs=94.2
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---VSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
...+||.+|+|.|..+..+++.. +..+++++|++++.++.+++.+...+ .+.+++++.+|... +-....++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~--~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA--ELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH--HHhhCCCCccE
Confidence 34799999999999998888763 44789999999999999999875432 13569999999875 21222368999
Q ss_pred EEEeCCCh-----------hchHH-HHHhcccCCCEEEEEeCC------HHHHHHHHHHHHhcCcccccc
Q 026506 185 IFLDLPQP-----------WLAIP-SAKKMLKQDGILCSFSPC------IEQVQRSCESLRLNFTGKESC 236 (237)
Q Consensus 185 v~~~~~~~-----------~~~l~-~~~~~L~~gG~l~~~~~~------~~~~~~~~~~l~~~f~~v~~~ 236 (237)
|++|..++ .++++ .+.+.|+|||++++...+ ......+.+.+++.|+.+..+
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y 249 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPY 249 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEE
Confidence 99986543 24677 889999999999866432 334566777777778876553
No 125
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.29 E-value=1.3e-10 Score=92.99 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=73.6
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
+...+..-.|.+|||||||.|+.+..++.. +...|+|+|.++......+..-.-.+.+..+......+.+ ++. .
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~--Lp~--~ 180 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED--LPN--L 180 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh--ccc--c
Confidence 444454567899999999999999888877 4578999999887655543322223433323333223322 333 2
Q ss_pred CCCCEEEE-----eCCChhchHHHHHhcccCCCEEE
Q 026506 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILC 210 (237)
Q Consensus 180 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~ 210 (237)
+.||+||+ +..+|...|.++.+.|++||.++
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLv 216 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELV 216 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEE
Confidence 78999985 55678889999999999999998
No 126
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.29 E-value=3.3e-11 Score=98.15 Aligned_cols=182 Identities=16% Similarity=0.098 Sum_probs=107.6
Q ss_pred CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE----EeccCcEE-EEECCCHHHHhhhcCCc-
Q 026506 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV----FSNKGGFV-YLLAPTPELWTLVLSHR- 88 (237)
Q Consensus 15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~- 88 (237)
.+++||||++.+..+ ||.|.+|+.|..+.|..... +|... ....|+|. |...|... ....++..
T Consensus 25 ~~~~GdrV~~~~~~~--------cg~C~~C~~g~~~~C~~~~~-~g~~~~~~~~~~~G~~aey~~v~~~~-~~~~lP~~~ 94 (280)
T TIGR03366 25 PLRLGQRVVWSVTVP--------CGRCFRCRRGLPQKCDSLRK-YGHEALDSGWPLSGGYAEHCHLPAGT-AIVPVPDDL 94 (280)
T ss_pred CCCCCCEEEEcCCCC--------CCCChhhhCcCcccCCChhh-cCcccccCCccccccceeeEEecCCC-cEEECCCCC
Confidence 699999999887666 99999999998888864221 12110 01235544 33444321 11111111
Q ss_pred ----ccccccc-cH-HHHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506 89 ----TQILYIA-DI-SFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF 161 (237)
Q Consensus 89 ----~~~~~~~-~~-~~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 161 (237)
...+... .. ...+......++++||.+|+|+ |.++.++++..+ ..+++++|.++++++.+++ .|.+..
T Consensus 95 ~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~ 169 (280)
T TIGR03366 95 PDAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATAL 169 (280)
T ss_pred CHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEe
Confidence 1111100 00 1133445566899999999988 778888888763 3458999999999888877 454332
Q ss_pred EEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 162 i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++.. +..+..........+|+++.....+ ..++.+.+.|+++|+++.++.
T Consensus 170 i~~~--~~~~~~~~~~~~~g~d~vid~~G~~-~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 170 AEPE--VLAERQGGLQNGRGVDVALEFSGAT-AAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred cCch--hhHHHHHHHhCCCCCCEEEECCCCh-HHHHHHHHHhcCCCEEEEecc
Confidence 2211 1100000000114699977655443 378899999999999998773
No 127
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.29 E-value=1.5e-10 Score=90.42 Aligned_cols=113 Identities=20% Similarity=0.325 Sum_probs=95.3
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCEEE
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIF 186 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~v~ 186 (237)
...+||||||.|.+...+|.. .|...++|+|+....+..|.+.+...++.| +.+...|+.. ..+.+ .++.|-|+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~--~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIP--DGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCC--CCCeeEEE
Confidence 358999999999999999998 478899999999999999999999999875 9999999876 22333 15899999
Q ss_pred EeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHH
Q 026506 187 LDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCES 225 (237)
Q Consensus 187 ~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~ 225 (237)
++-|+|| .+++.+.+.|+|||.|.+-+...+..+..+..
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~ 176 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLE 176 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHH
Confidence 9999997 47999999999999999888777766663333
No 128
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=2.5e-11 Score=91.16 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=87.4
Q ss_pred hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 182 (237)
++.......+||+|||||......- . .+..+|+.+|+++.|-+.+.+.+......+...+..++..+ ++....+++
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~-~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~--l~~l~d~s~ 146 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYP-W-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGEN--LPQLADGSY 146 (252)
T ss_pred HhcccCccceEEecccCCCCccccc-C-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhc--CcccccCCe
Confidence 3344444578999999998763322 2 25689999999999999999988877555533488888876 332223899
Q ss_pred CEEEE-----eCCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHH
Q 026506 183 DSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227 (237)
Q Consensus 183 D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~ 227 (237)
|.|+. ...++.+.|++..++|+|||+++++.....+-..|...+.
T Consensus 147 DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q 196 (252)
T KOG4300|consen 147 DTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ 196 (252)
T ss_pred eeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHH
Confidence 99863 4567788999999999999999988765555444444433
No 129
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.28 E-value=1.2e-11 Score=100.49 Aligned_cols=125 Identities=29% Similarity=0.413 Sum_probs=98.8
Q ss_pred ccccccHH--HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506 91 ILYIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (237)
Q Consensus 91 ~~~~~~~~--~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d 168 (237)
.++.++.+ .....+.+.+++.|||+++++|+-+.+++..+...+.+++.|+++.++...++++.+.|..+ +.+...|
T Consensus 66 ~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D 144 (283)
T PF01189_consen 66 LFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINAD 144 (283)
T ss_dssp SEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESH
T ss_pred cEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeec
Confidence 34444433 35567789999999999999999999999998767899999999999999999999999887 7777777
Q ss_pred ccCCCCCCCCCCCCCEEEEeCCCh---------------------------hchHHHHHhcc----cCCCEEEEEeCCHH
Q 026506 169 IQGQGFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKML----KQDGILCSFSPCIE 217 (237)
Q Consensus 169 ~~~~~~~~~~~~~~D~v~~~~~~~---------------------------~~~l~~~~~~L----~~gG~l~~~~~~~~ 217 (237)
.... .+......||.|++|+|+. .+.|+.+.+.+ ||||+++ |++|.-
T Consensus 145 ~~~~-~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv-YsTCS~ 222 (283)
T PF01189_consen 145 ARKL-DPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV-YSTCSL 222 (283)
T ss_dssp HHHH-HHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE-EEESHH
T ss_pred cccc-cccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE-EEeccH
Confidence 7641 0111113599999998854 24789999999 9999999 998874
Q ss_pred H
Q 026506 218 Q 218 (237)
Q Consensus 218 ~ 218 (237)
.
T Consensus 223 ~ 223 (283)
T PF01189_consen 223 S 223 (283)
T ss_dssp H
T ss_pred H
Confidence 3
No 130
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.28 E-value=4.4e-11 Score=101.88 Aligned_cols=188 Identities=18% Similarity=0.140 Sum_probs=113.1
Q ss_pred CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccC-----CCCceE-EeccCcEE-EEECCCHHHHhhhc
Q 026506 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGK-----PFGSMV-FSNKGGFV-YLLAPTPELWTLVL 85 (237)
Q Consensus 13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~g~~~-~~~~~~~~-~~~~~~~~~~~~~~ 85 (237)
...|++||||++.+..+ ||.|.+|+.|..+.|..... .+|... ....|+|. |...|..+.....+
T Consensus 80 V~~~~vGdrV~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~v 151 (393)
T TIGR02819 80 VEFIKIGDIVSVPFNIA--------CGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKF 151 (393)
T ss_pred cccccCCCEEEEecccC--------CCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEEC
Confidence 45799999999987666 99999999999988874211 011100 01135555 55555322111112
Q ss_pred CCc----------ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 026506 86 SHR----------TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF 153 (237)
Q Consensus 86 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 153 (237)
+.. ..+..+...+ ..+....+.++++||..|+|+ |.++.++++..+ ...++++|.++++++.+++
T Consensus 152 P~~~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~-- 228 (393)
T TIGR02819 152 PDRDQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS-- 228 (393)
T ss_pred CCcccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH--
Confidence 211 1111111111 123445678999999999988 777888888764 3556778888989998887
Q ss_pred HHcCCCCcEEEEE-ccccCCCCCC-CCCCCCCEEEEeCCChh-------------chHHHHHhcccCCCEEEEEeCC
Q 026506 154 ERTGVSSFVTVGV-RDIQGQGFPD-EFSGLADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 154 ~~~~~~~~i~~~~-~d~~~~~~~~-~~~~~~D~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
.|... +.... .+..+ .+.. ....++|+++.....+. .+++.+.+.+++||++++++..
T Consensus 229 --~Ga~~-v~~~~~~~~~~-~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 229 --FGCET-VDLSKDATLPE-QIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred --cCCeE-EecCCcccHHH-HHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 46431 22111 11111 0111 11146999886655442 4899999999999999987753
No 131
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.28 E-value=9.3e-11 Score=101.13 Aligned_cols=125 Identities=21% Similarity=0.254 Sum_probs=92.5
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC--C
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--E 177 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~ 177 (237)
+.+.+.+.++.+|||+|||+|.++..++... .+|+++|+++++++.|++|+..+++.+ +++..+|+.+. ++. .
T Consensus 284 ~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~-l~~~~~ 358 (431)
T TIGR00479 284 ALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETV-LPKQPW 358 (431)
T ss_pred HHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHH-HHHHHh
Confidence 4455567788999999999999999988763 689999999999999999999888866 99999998641 111 0
Q ss_pred CCCCCCEEEEeCCCh---hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 178 FSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
....||+|++|+|.. ..+++.+. .++|++.+++. -....+.+-++.+.+ +|.
T Consensus 359 ~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs-c~p~tlard~~~l~~~gy~ 414 (431)
T TIGR00479 359 AGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS-CNPATLARDLEFLCKEGYG 414 (431)
T ss_pred cCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc-CCHHHHHHHHHHHHHCCee
Confidence 114699999999853 34555444 57888766533 234556666777766 664
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.27 E-value=1.1e-10 Score=88.01 Aligned_cols=103 Identities=24% Similarity=0.254 Sum_probs=79.1
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.+++.+++.++++|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. . .++++..+|+.+..++.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~~~~-- 75 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFDLPK-- 75 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCCccc--
Confidence 4677788888999999999999999999887 36899999999999999998753 2 34899999998654443
Q ss_pred CCCCCEEEEeCCCh--hchHHHHHhcc--cCCCEEE
Q 026506 179 SGLADSIFLDLPQP--WLAIPSAKKML--KQDGILC 210 (237)
Q Consensus 179 ~~~~D~v~~~~~~~--~~~l~~~~~~L--~~gG~l~ 210 (237)
..+|.|+.|+|-. ...+..+.+.. .++|.++
T Consensus 76 -~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~ 110 (169)
T smart00650 76 -LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLM 110 (169)
T ss_pred -cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEE
Confidence 4699999998744 24555555433 3566665
No 133
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=7.7e-11 Score=86.75 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=97.1
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
.....++|||||+|..+.+++..+++...+.++|+||.+++..++.+..++.. ++.+..|+. ..+.. ++.|+++
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~-~~l~~---~~VDvLv 115 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLL-SGLRN---ESVDVLV 115 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHH-hhhcc---CCccEEE
Confidence 33678999999999999999999888888999999999999999988877743 788889987 44544 7899999
Q ss_pred EeCCCh--------------------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 187 LDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 187 ~~~~~~--------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
.|+|-- ..++.++-..|+|.|.++++.......+++++.++. +|.
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~ 187 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYG 187 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccc
Confidence 887610 135666778889999999888766777888888888 775
No 134
>PRK03612 spermidine synthase; Provisional
Probab=99.27 E-value=3.2e-11 Score=105.91 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=89.6
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH--HHHc---CC-CCcEEEEEccccCCCCCCCCCC
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARED--FERT---GV-SSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~---~~-~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
+++.+|||+|||+|..+..++++ ++..+++++|+++++++.++++ +... .. +.+++++.+|..+ +.....+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~l~~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--WLRKLAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--HHHhCCC
Confidence 45679999999999999888865 2337999999999999999984 2211 11 2458999999875 1111126
Q ss_pred CCCEEEEeCCChh----------chHHHHHhcccCCCEEEEEeC----CHHHHHHHHHHHHh-cC
Q 026506 181 LADSIFLDLPQPW----------LAIPSAKKMLKQDGILCSFSP----CIEQVQRSCESLRL-NF 230 (237)
Q Consensus 181 ~~D~v~~~~~~~~----------~~l~~~~~~L~~gG~l~~~~~----~~~~~~~~~~~l~~-~f 230 (237)
+||+|++|.+++. ++++.+.+.|+|||++++... ......++.+.+++ +|
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 8999999987543 468899999999999987542 13445677778888 68
No 135
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.26 E-value=1.8e-10 Score=93.06 Aligned_cols=188 Identities=21% Similarity=0.169 Sum_probs=117.6
Q ss_pred ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeecccccc-------CCCCceEEeccCcEE-EEECC-CHHHH
Q 026506 11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIG-------KPFGSMVFSNKGGFV-YLLAP-TPELW 81 (237)
Q Consensus 11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~~g~~~~~~~~~~~-~~~~~-~~~~~ 81 (237)
+-.+.+||||+|+...... ||+|..|..|.-+.|+-+. +.-|..-.+..+... .++.- +...|
T Consensus 72 ~gVt~vkpGDhVI~~f~p~--------CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y 143 (366)
T COG1062 72 EGVTSVKPGDHVILLFTPE--------CGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEY 143 (366)
T ss_pred CCccccCCCCEEEEcccCC--------CCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhh
Confidence 4568899999999977556 8999999999888876321 122322222222111 11111 11222
Q ss_pred hhhcCCccccccc---------------ccHHHHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHH
Q 026506 82 TLVLSHRTQILYI---------------ADISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQR 145 (237)
Q Consensus 82 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~ 145 (237)
..........+.+ ......+..+++++|+++..+|+|. |..+++-+... +..+++++|++++.
T Consensus 144 ~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~K 222 (366)
T COG1062 144 TVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEK 222 (366)
T ss_pred eeecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHH
Confidence 1111111111111 1123467778899999999999999 55566666665 56899999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 146 AASAREDFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 146 ~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
++.|++ +|....++.... |+.+ ...+.+.++.|.+|....... .+++++..+.++|..++++
T Consensus 223 l~~A~~----fGAT~~vn~~~~~~vv~-~i~~~T~gG~d~~~e~~G~~~-~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 223 LELAKK----FGATHFVNPKEVDDVVE-AIVELTDGGADYAFECVGNVE-VMRQALEATHRGGTSVIIG 285 (366)
T ss_pred HHHHHh----cCCceeecchhhhhHHH-HHHHhcCCCCCEEEEccCCHH-HHHHHHHHHhcCCeEEEEe
Confidence 999998 576554444333 3332 122223368999876655544 9999999999999988664
No 136
>PRK05785 hypothetical protein; Provisional
Probab=99.26 E-value=9.9e-11 Score=92.21 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=69.7
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
++.+|||+|||+|.++..+++.. ..+++++|+|++|++.|++. .....+|+.+.++++ +.||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d---~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRD---KSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCC---CCEEEEEe
Confidence 47899999999999999888774 36899999999999998863 123567877666665 78999985
Q ss_pred -----eCCChhchHHHHHhcccCCC
Q 026506 188 -----DLPQPWLAIPSAKKMLKQDG 207 (237)
Q Consensus 188 -----~~~~~~~~l~~~~~~L~~gG 207 (237)
+.+++...++++.+.|||..
T Consensus 117 ~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 117 SFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cChhhccCCHHHHHHHHHHHhcCce
Confidence 34566789999999999954
No 137
>PLN02672 methionine S-methyltransferase
Probab=99.26 E-value=9.4e-11 Score=108.91 Aligned_cols=123 Identities=20% Similarity=0.174 Sum_probs=92.6
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC---------------CcEEEEEccccCCC
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---------------SFVTVGVRDIQGQG 173 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---------------~~i~~~~~d~~~~~ 173 (237)
+.+|||+|||+|.+++.++... +..+++++|+|+++++.|++|+..++.+ +++++..+|+.+ .
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~-~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG-Y 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh-h
Confidence 4689999999999999999885 4479999999999999999999876432 358999999874 2
Q ss_pred CCCCCCCCCCEEEEeCC-----------------Ch--------------------------hchHHHHHhcccCCCEEE
Q 026506 174 FPDEFSGLADSIFLDLP-----------------QP--------------------------WLAIPSAKKMLKQDGILC 210 (237)
Q Consensus 174 ~~~~~~~~~D~v~~~~~-----------------~~--------------------------~~~l~~~~~~L~~gG~l~ 210 (237)
+... ...||+|+.|+| .| ..+++++.+.|+|||.++
T Consensus 197 ~~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 197 CRDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred cccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 3211 136999998876 00 124566778999999988
Q ss_pred EEeCCHHHHHHHH-HHHHh-cCccccc
Q 026506 211 SFSPCIEQVQRSC-ESLRL-NFTGKES 235 (237)
Q Consensus 211 ~~~~~~~~~~~~~-~~l~~-~f~~v~~ 235 (237)
+-. ...|.+.+. +.+++ +|..+++
T Consensus 276 lEi-G~~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 276 FNM-GGRPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred EEE-CccHHHHHHHHHHHHCCCCeeEE
Confidence 544 456667777 47766 7876554
No 138
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.25 E-value=7e-11 Score=89.64 Aligned_cols=119 Identities=22% Similarity=0.258 Sum_probs=83.5
Q ss_pred ccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCc--------EEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 026506 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG--------HVYTFDFHEQRAASAREDFERTGVSSFV 162 (237)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~--------~v~~vD~~~~~~~~a~~~~~~~~~~~~i 162 (237)
.+.+..++.++..+++++++.++|-.||+|++.+..+....... ++++.|+++++++.+++|++..++...+
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 34455555678888899999999999999999988776653322 3899999999999999999999988889
Q ss_pred EEEEccccCCCCCCCCCCCCCEEEEeCCCh-------------hchHHHHHhcccCCCEEEEEe
Q 026506 163 TVGVRDIQGQGFPDEFSGLADSIFLDLPQP-------------WLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 163 ~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~-------------~~~l~~~~~~L~~gG~l~~~~ 213 (237)
++...|+.+..+.. +.+|.|+.|+|-- ..+++.+.+.+++ ..++++.
T Consensus 91 ~~~~~D~~~l~~~~---~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 91 DFIQWDARELPLPD---GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp EEEE--GGGGGGTT---SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred EEEecchhhccccc---CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 99999998754333 6899999999821 2457778888888 4444344
No 139
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3.2e-10 Score=84.39 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
+.-.|.+|+|+|||+|.+++..+.. +...|+++|+++++++.+++|.++.+ ..+++...|+.+ +. +.+|.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~--~~----~~~dt 111 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSD--FR----GKFDT 111 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhh--cC----Cccce
Confidence 4566889999999999999776654 45899999999999999999998833 349999999975 44 67999
Q ss_pred EEEeCC-------ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHH
Q 026506 185 IFLDLP-------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (237)
Q Consensus 185 v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l 226 (237)
++.|+| ..+.+++.+++.-+ ++|+........+.+..
T Consensus 112 vimNPPFG~~~rhaDr~Fl~~Ale~s~-----vVYsiH~a~~~~f~~~~ 155 (198)
T COG2263 112 VIMNPPFGSQRRHADRPFLLKALEISD-----VVYSIHKAGSRDFVEKF 155 (198)
T ss_pred EEECCCCccccccCCHHHHHHHHHhhh-----eEEEeeccccHHHHHHH
Confidence 999987 23456666665542 34555544444444433
No 140
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=9.6e-11 Score=88.24 Aligned_cols=115 Identities=23% Similarity=0.318 Sum_probs=89.8
Q ss_pred cccHHHHHHhcC--CCCCCEEEEEccCccHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHcCC---------CCc
Q 026506 94 IADISFVIMYLE--LVPGCLVLESGTGSGSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTGV---------SSF 161 (237)
Q Consensus 94 ~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~---------~~~ 161 (237)
|...+.+++.+. ++||.+.||+|+|+|+++..++..+++.+. .+++|.-++.++.+++++...-. ...
T Consensus 66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 444445777776 899999999999999999999988765544 49999999999999999875431 123
Q ss_pred EEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506 162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 162 i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
+.+..+|.. ..+++. .+||.|++.+..+. ..+++.+.|++||++++-
T Consensus 146 l~ivvGDgr-~g~~e~--a~YDaIhvGAaa~~-~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 146 LSIVVGDGR-KGYAEQ--APYDAIHVGAAASE-LPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eEEEeCCcc-ccCCcc--CCcceEEEccCccc-cHHHHHHhhccCCeEEEe
Confidence 678889987 444443 68999988865544 889999999999998743
No 141
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.23 E-value=4e-11 Score=100.39 Aligned_cols=104 Identities=23% Similarity=0.161 Sum_probs=84.4
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCC-CCCCCCCCCCCEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQ-GFPDEFSGLADSI 185 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~-~~~~~~~~~~D~v 185 (237)
.|++||++.|=||+++++.+.. ++.+|+.||.|...++.|++|++.+|++ .++.++.+|+++. .....-+.+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4999999999999999776654 6679999999999999999999999974 4578999999861 1111112489999
Q ss_pred EEeCCCh--------------hchHHHHHhcccCCCEEEEEe
Q 026506 186 FLDLPQP--------------WLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 186 ~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~ 213 (237)
++|+|.. ..++..+.++|+|||.+++.+
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999832 357888999999999999665
No 142
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.23 E-value=1.1e-10 Score=96.62 Aligned_cols=122 Identities=12% Similarity=0.130 Sum_probs=84.4
Q ss_pred HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
+++...++.+|||+|||+|.++..++.. ..+|+++|+++.+++.|+++++.+++.+ +++..+|+.+.... ..+.
T Consensus 167 ~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~--~~~~ 240 (315)
T PRK03522 167 DWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATA--QGEV 240 (315)
T ss_pred HHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHh--cCCC
Confidence 3444345789999999999999998875 3689999999999999999999988855 99999998752111 1146
Q ss_pred CCEEEEeCCChh--chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCc
Q 026506 182 ADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFT 231 (237)
Q Consensus 182 ~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~ 231 (237)
||+|++|+|... ..+...+..++|++.+++.. ....+.+-++.+ .+|.
T Consensus 241 ~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc-~p~t~~rd~~~l-~~y~ 290 (315)
T PRK03522 241 PDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSC-NAQTMAKDLAHL-PGYR 290 (315)
T ss_pred CeEEEECCCCCCccHHHHHHHHHcCCCeEEEEEC-CcccchhHHhhc-cCcE
Confidence 999999988542 12333344456765555332 224444555555 3443
No 143
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.23 E-value=2e-10 Score=91.03 Aligned_cols=110 Identities=22% Similarity=0.282 Sum_probs=83.6
Q ss_pred HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (237)
Q Consensus 98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 177 (237)
..+...+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+. .+++...|+.+ ++..
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~--~~~~ 110 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEE--LAAE 110 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHH--hhhh
Confidence 34555555678899999999999999888765 26799999999999999998876554 36777777754 2211
Q ss_pred CCCCCCEEEE-----eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 178 FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 178 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
..+.||+|++ +.+++..+++.+.+.|+|||.+++..+
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 1268999975 345666789999999999999986543
No 144
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.22 E-value=1.1e-10 Score=94.13 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=74.6
Q ss_pred CCCCCEEEEEccCccH----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHH----cC----------------
Q 026506 106 LVPGCLVLESGTGSGS----LTTSLARAVA----PTGHVYTFDFHEQRAASAREDFER----TG---------------- 157 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~----~~~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~----~~---------------- 157 (237)
..++.+|+|+|||+|. +++.+++... ...+|+++|+|+.+++.|++..-. .+
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999996 4445555432 146899999999999999985310 01
Q ss_pred ------CCCcEEEEEccccCCCCCCCCCCCCCEEEEeC-------CChhchHHHHHhcccCCCEEEEE
Q 026506 158 ------VSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL-------PQPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 158 ------~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~-------~~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
+.+.+++...|+.+...+. +.||+|++.. +....+++++.+.|+|||.+++-
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~---~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPL---GDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCcc---CCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 1134788899998644433 7899998732 23346899999999999999843
No 145
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.21 E-value=2.1e-11 Score=92.57 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=76.6
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC--CCCCCCE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--FSGLADS 184 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~--~~~~~D~ 184 (237)
-+|.++||+.||+|.+++..+.+ +..+|+.+|.++..++.+++|++..+..+.+.+...|+.. .+... ....||+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~-~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK-FLLKLAKKGEKFDI 117 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH-HHHHHHHCTS-EEE
T ss_pred cCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH-HHHhhcccCCCceE
Confidence 47899999999999999887776 5689999999999999999999999988779999999764 11110 1268999
Q ss_pred EEEeCCChh-----chHHHHH--hcccCCCEEEEEeCC
Q 026506 185 IFLDLPQPW-----LAIPSAK--KMLKQDGILCSFSPC 215 (237)
Q Consensus 185 v~~~~~~~~-----~~l~~~~--~~L~~gG~l~~~~~~ 215 (237)
||+|+|-.. .+++.+. ..|+++|.+++-...
T Consensus 118 IflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 118 IFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp EEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred EEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 999998433 3455554 678899998866543
No 146
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=4.2e-10 Score=88.13 Aligned_cols=121 Identities=21% Similarity=0.152 Sum_probs=90.3
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC--CCCCCCCE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--EFSGLADS 184 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~~~~D~ 184 (237)
..+..+||+|||+|..++.++..++ .+.++++|.++.++..|.+|+.++++.+++.+++.+.....+.+ ...+.+|+
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 4456999999999999999999985 68999999999999999999999999888988865444321111 12378999
Q ss_pred EEEeCCCh-------------------------------hchHHHHHhcccCCCEEEEEeC----CHHHHHHHHHHHHh
Q 026506 185 IFLDLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSP----CIEQVQRSCESLRL 228 (237)
Q Consensus 185 v~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~----~~~~~~~~~~~l~~ 228 (237)
++.|+|-- ..++.-+-+.|+|||.+.+-.. ...-+..|+..+.+
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~ 304 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKD 304 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchh
Confidence 99887610 1246667899999999886543 22335566665555
No 147
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.21 E-value=1.1e-10 Score=98.73 Aligned_cols=187 Identities=18% Similarity=0.141 Sum_probs=108.3
Q ss_pred CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC--CCceE-------------E--eccCcEE-EEE
Q 026506 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP--FGSMV-------------F--SNKGGFV-YLL 74 (237)
Q Consensus 13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~g~~~-------------~--~~~~~~~-~~~ 74 (237)
...+++||||.+....+ ||.|.+|+.|..+.|...... .|... . ...|++. |..
T Consensus 80 v~~~~~GdrV~~~~~~~--------cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~ 151 (371)
T cd08281 80 VTDLEVGDHVVLVFVPS--------CGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAV 151 (371)
T ss_pred CCcCCCCCEEEEccCCC--------CCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEE
Confidence 34689999999866555 899999999988887642110 01000 0 0012333 333
Q ss_pred CCCHHHHhh--hcCC-cccccccc-cHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026506 75 APTPELWTL--VLSH-RTQILYIA-DISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA 147 (237)
Q Consensus 75 ~~~~~~~~~--~~~~-~~~~~~~~-~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~ 147 (237)
.|....+.. .++. .+..+... ..+. +.....++++++||..|+|+ |.++.++++..+ ..+|+++|.+++.++
T Consensus 152 v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~ 230 (371)
T cd08281 152 VSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLA 230 (371)
T ss_pred ecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHH
Confidence 333221111 1111 11111111 1111 23445688999999999988 777888888763 247999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 148 SAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 148 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.+++ .|.+..++....|..+ .+.....+++|+|+..... ...++.+.+.|+++|+++.++.
T Consensus 231 ~a~~----~Ga~~~i~~~~~~~~~-~i~~~~~~g~d~vid~~G~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 231 LARE----LGATATVNAGDPNAVE-QVRELTGGGVDYAFEMAGS-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred HHHH----cCCceEeCCCchhHHH-HHHHHhCCCCCEEEECCCC-hHHHHHHHHHHhcCCEEEEEcc
Confidence 8876 4654323322222221 1111111469997755543 3478889999999999997763
No 148
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.21 E-value=3.2e-10 Score=95.80 Aligned_cols=120 Identities=11% Similarity=0.139 Sum_probs=87.4
Q ss_pred hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 182 (237)
.++..++.+|||+|||+|.+++.++.. ..+++++|+++.+++.|++|++.+++++ +++..+|+.+.. .. ....|
T Consensus 228 ~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~~-~~-~~~~~ 301 (374)
T TIGR02085 228 WVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFA-TA-QMSAP 301 (374)
T ss_pred HHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHH-Hh-cCCCC
Confidence 334345689999999999999888854 3689999999999999999999988865 999999986421 11 11459
Q ss_pred CEEEEeCCChh---chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCc
Q 026506 183 DSIFLDLPQPW---LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFT 231 (237)
Q Consensus 183 D~v~~~~~~~~---~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~ 231 (237)
|+|++|+|... .+++.+. .++|++.+++.. ...++.+-+..| .+|.
T Consensus 302 D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl~~L-~gy~ 350 (374)
T TIGR02085 302 ELVLVNPPRRGIGKELCDYLS-QMAPKFILYSSC-NAQTMAKDIAEL-SGYQ 350 (374)
T ss_pred CEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHHHHh-cCce
Confidence 99999998542 3444443 478887776443 345666666666 5554
No 149
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.20 E-value=1.8e-10 Score=89.68 Aligned_cols=98 Identities=14% Similarity=0.075 Sum_probs=71.6
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEccccCC
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--------------SSFVTVGVRDIQGQ 172 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~ 172 (237)
.++.+|||+|||.|..+..++.+ ...|+++|+|+.+++.+.+. .++ ...+++.++|+.+.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCC
Confidence 56789999999999999999876 47899999999999986432 121 12488899999863
Q ss_pred CCCCCCCCCCCEEEEe-----CC--ChhchHHHHHhcccCCCEEEEE
Q 026506 173 GFPDEFSGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 173 ~~~~~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
... ..+.||.|+-. .+ .....++.+.++|+|||+++++
T Consensus 107 ~~~--~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 107 TAA--DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred Ccc--cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 321 11568887632 22 1235799999999999986544
No 150
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.20 E-value=4.8e-11 Score=88.82 Aligned_cols=94 Identities=33% Similarity=0.426 Sum_probs=70.6
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..++.+|||+|||.|.++..++.. + .+++++|+++.+++. .+ ......+......+. +.||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~~g~D~~~~~~~~----------~~-~~~~~~~~~~~~~~~---~~fD~i 82 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--G-FEVTGVDISPQMIEK----------RN-VVFDNFDAQDPPFPD---GSFDLI 82 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--T-SEEEEEESSHHHHHH----------TT-SEEEEEECHTHHCHS---SSEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--C-CEEEEEECCHHHHhh----------hh-hhhhhhhhhhhhccc---cchhhH
Confidence 577889999999999999888655 2 499999999999887 11 222222222122233 789999
Q ss_pred EEe-----CCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506 186 FLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 186 ~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
++. .+++..+++.+.+.|||||.+++..+..
T Consensus 83 ~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 83 ICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 864 4567789999999999999999888864
No 151
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.19 E-value=1.4e-10 Score=88.87 Aligned_cols=100 Identities=24% Similarity=0.415 Sum_probs=77.0
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..++++|+|+.||.|.+++.++... ....|+++|++|..++.++++++.+++.+.+....+|..+. .+. +.+|.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~-~~~---~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF-LPE---GKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----T---T-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh-cCc---cccCEE
Confidence 6789999999999999999998853 45789999999999999999999999998899999998752 223 789999
Q ss_pred EEeCCC-hhchHHHHHhcccCCCEEE
Q 026506 186 FLDLPQ-PWLAIPSAKKMLKQDGILC 210 (237)
Q Consensus 186 ~~~~~~-~~~~l~~~~~~L~~gG~l~ 210 (237)
+++.|. ...++..+...+++||.+.
T Consensus 174 im~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred EECChHHHHHHHHHHHHHhcCCcEEE
Confidence 998874 4578999999999999875
No 152
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.19 E-value=4.1e-10 Score=88.65 Aligned_cols=102 Identities=23% Similarity=0.278 Sum_probs=79.3
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
..+.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++...+..+ +.+...|+.+..... .+.||+|+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~--~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLK-IEYRCTSVEDLAEKG--AKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhcCC--CCCccEEE
Confidence 34789999999999999887765 2469999999999999999887766533 778888876422221 26799997
Q ss_pred Ee-----CCChhchHHHHHhcccCCCEEEEEeC
Q 026506 187 LD-----LPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 187 ~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++ ..++..+++++.+.|+|||.+++..+
T Consensus 118 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 63 45667789999999999999886543
No 153
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.19 E-value=5.8e-10 Score=83.69 Aligned_cols=106 Identities=18% Similarity=0.158 Sum_probs=82.5
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CCCCCCCEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~~D~v 185 (237)
-.|.++||+.+|+|.+++..+.+ +..+++.+|.+...+..+++|++..+.....++...|+.. .++. .....||+|
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~-~L~~~~~~~~FDlV 118 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR-ALKQLGTREPFDLV 118 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH-HHHhcCCCCcccEE
Confidence 57899999999999999888877 4689999999999999999999998877778888888873 2111 111349999
Q ss_pred EEeCCChhchH------HH--HHhcccCCCEEEEEeCC
Q 026506 186 FLDLPQPWLAI------PS--AKKMLKQDGILCSFSPC 215 (237)
Q Consensus 186 ~~~~~~~~~~l------~~--~~~~L~~gG~l~~~~~~ 215 (237)
|+|+|-.+..+ .. -...|+|+|.+++-...
T Consensus 119 flDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 119 FLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 99999664333 12 23569999999966553
No 154
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.19 E-value=2.7e-10 Score=99.51 Aligned_cols=107 Identities=26% Similarity=0.272 Sum_probs=81.9
Q ss_pred HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCC
Q 026506 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFP 175 (237)
Q Consensus 98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~ 175 (237)
..++..+...++.+|||+|||+|.++..++... .+++++|+++.+++.+++. .+...++.+...|+.. .+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCC
Confidence 346677776778899999999999999998873 6899999999999887653 2222348889999863 2334
Q ss_pred CCCCCCCCEEEEeCC-----C--hhchHHHHHhcccCCCEEEEEe
Q 026506 176 DEFSGLADSIFLDLP-----Q--PWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 176 ~~~~~~~D~v~~~~~-----~--~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
. +.||+|+++.. + ...+++++.+.|||||++++..
T Consensus 101 ~---~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 101 D---GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred C---CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 3 68999987542 1 2468999999999999998753
No 155
>PHA03412 putative methyltransferase; Provisional
Probab=99.18 E-value=2.8e-10 Score=88.59 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=70.0
Q ss_pred CCCEEEEEccCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
.+.+|||+|||+|.++..+++.+. +..+++++|+++.+++.|+++.. + +.+...|+....+ . +.||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~-~~~~~~D~~~~~~-~---~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----E-ATWINADALTTEF-D---TLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----C-CEEEEcchhcccc-c---CCccEE
Confidence 467999999999999999887642 24689999999999999998642 3 7788899875332 2 689999
Q ss_pred EEeCCCh-----------------hchHHHHHhcccCCCEE
Q 026506 186 FLDLPQP-----------------WLAIPSAKKMLKQDGIL 209 (237)
Q Consensus 186 ~~~~~~~-----------------~~~l~~~~~~L~~gG~l 209 (237)
+.|+|-. ..+++.+.+++++|+.|
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 9998711 23677888866666653
No 156
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.18 E-value=2.2e-10 Score=87.72 Aligned_cols=124 Identities=19% Similarity=0.162 Sum_probs=98.6
Q ss_pred cccccccHHH-HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506 90 QILYIADISF-VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (237)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d 168 (237)
.+..+.+... +...+....+.+++|+|.=+|+.++.+|..++.+++|+++|++++..+.+.+..+..|...++++.+++
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 3333444443 344556677889999999999999999999988999999999999999999999989998889999998
Q ss_pred ccC---CCCCCCCCCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEEe
Q 026506 169 IQG---QGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 169 ~~~---~~~~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..+ .-+.....+.||.+|+|.. ......+++.+++++||+|++-.
T Consensus 134 a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEec
Confidence 875 1112222378999999875 44578999999999999998553
No 157
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.16 E-value=6.5e-10 Score=86.92 Aligned_cols=99 Identities=17% Similarity=0.096 Sum_probs=72.0
Q ss_pred CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEcccc
Q 026506 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--------------SSFVTVGVRDIQ 170 (237)
Q Consensus 105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~ 170 (237)
...++.+|||+|||.|..+..++.+ ..+|+++|+++.+++.+.+. .++ ...+++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECccc
Confidence 4456789999999999999999875 47899999999999986431 222 234888899998
Q ss_pred CCCCCCCCCCCCCEEEE-----eCC--ChhchHHHHHhcccCCCEEEE
Q 026506 171 GQGFPDEFSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCS 211 (237)
Q Consensus 171 ~~~~~~~~~~~~D~v~~-----~~~--~~~~~l~~~~~~L~~gG~l~~ 211 (237)
+..... .+.||.|+- ..+ ....+++.+.++|+|||++++
T Consensus 108 ~l~~~~--~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 108 ALTAAD--LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCCccc--CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 632221 156898873 222 223679999999999987543
No 158
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=99.16 E-value=5.7e-11 Score=68.79 Aligned_cols=53 Identities=26% Similarity=0.429 Sum_probs=37.6
Q ss_pred ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE
Q 026506 11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV 63 (237)
Q Consensus 11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~ 63 (237)
+++++|++||||.+.++++++..+.|.+|..+++..|.+.|++++|.+.|..+
T Consensus 1 ~R~Gpf~~GdrVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~HDdlIG~~eGsVV 53 (54)
T PF14801_consen 1 MRRGPFRAGDRVQLTDPKGRKHTITLEPGGEFHTHRGAIRHDDLIGRPEGSVV 53 (54)
T ss_dssp ----S--TT-EEEEEETT--EEEEE--TT-EEEETTEEEEHHHHTT--TTEEE
T ss_pred CCcCCCCCCCEEEEccCCCCeeeEEECCCCeEEcCccccchhheecCCCcEEe
Confidence 46899999999999999999999999999999999999999999999998765
No 159
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.16 E-value=3.5e-10 Score=94.50 Aligned_cols=180 Identities=21% Similarity=0.209 Sum_probs=108.2
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH----- 87 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 87 (237)
..+++||||+.....+ ||.|.+|+.|..+.|......+|. ...|++. |...|....+ .++.
T Consensus 74 ~~~~~Gd~V~~~~~~~--------c~~c~~c~~g~~~~c~~~~~~~g~---~~~G~~ae~~~v~~~~~~--~~P~~~~~~ 140 (339)
T cd08239 74 THFRVGDRVMVYHYVG--------CGACRNCRRGWMQLCTSKRAAYGW---NRDGGHAEYMLVPEKTLI--PLPDDLSFA 140 (339)
T ss_pred ccCCCCCEEEECCCCC--------CCCChhhhCcCcccCcCccccccc---CCCCcceeEEEechHHeE--ECCCCCCHH
Confidence 4689999999987666 899999999988777532111221 1234444 3333322211 1111
Q ss_pred ccccc-ccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 026506 88 RTQIL-YIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (237)
Q Consensus 88 ~~~~~-~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~ 164 (237)
.+..+ .+...+ ..+..+.+.++++||.+|+|. |.++.++++..+. .++++++.+++..+.+++ .|.+..++.
T Consensus 141 ~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~~~~~~~----~ga~~~i~~ 215 (339)
T cd08239 141 DGALLLCGIGTAYHALRRVGVSGRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPERLELAKA----LGADFVINS 215 (339)
T ss_pred HhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCCEEEcC
Confidence 11111 111111 234556788899999999987 7778888888642 359999999998888865 454332222
Q ss_pred EEccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 165 GVRDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 165 ~~~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
...+ .+ .+.. ..+.++|+|+...... ..+..+.+.|+++|++++++.
T Consensus 216 ~~~~-~~-~~~~~~~~~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 216 GQDD-VQ-EIRELTSGAGADVAIECSGNT-AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred Ccch-HH-HHHHHhCCCCCCEEEECCCCH-HHHHHHHHHhhcCCEEEEEcC
Confidence 2222 11 0110 1113699977555443 367888999999999998764
No 160
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.16 E-value=3.9e-10 Score=92.63 Aligned_cols=107 Identities=17% Similarity=0.138 Sum_probs=74.8
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCCCCCCCCCCC-E
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGLAD-S 184 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~~D-~ 184 (237)
.++.+|||+|||+|..+..+++.+....+++++|+|+++++.+++++........+..+.+|+.+ ..++.......+ +
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 46789999999999999999988643478999999999999999987653222236778899875 223321001122 2
Q ss_pred EEEeC-----C--ChhchHHHHHhcccCCCEEEEEe
Q 026506 185 IFLDL-----P--QPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 185 v~~~~-----~--~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
++.+. + ....+++++.+.|+|||.+++-.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 23221 1 22357999999999999998644
No 161
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.15 E-value=6.3e-10 Score=87.36 Aligned_cols=105 Identities=27% Similarity=0.350 Sum_probs=77.9
Q ss_pred HHHhcC--CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506 100 VIMYLE--LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (237)
Q Consensus 100 ~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 177 (237)
++..+. ..++.+|||+|||+|.++..++.. ..+++++|+++++++.|++++...+..+++.+...|+.+ .+
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~-- 117 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS--LC-- 117 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh--CC--
Confidence 444444 567899999999999999988765 368999999999999999998776654458999999864 22
Q ss_pred CCCCCCEEEEe-----CC--ChhchHHHHHhcccCCCEEEEEeC
Q 026506 178 FSGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 178 ~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+.||+|+.. .+ ....+++++.+.+++++.+. +.+
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~-~~~ 158 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT-FAP 158 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE-ECC
Confidence 569998752 12 22356788888877655544 444
No 162
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4.8e-10 Score=95.64 Aligned_cols=125 Identities=20% Similarity=0.225 Sum_probs=94.6
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.+.++++..++++++|+-||.|.+++.++.. ..+|+++|+++++++.|++|++.+++.| +++..+++.+.......
T Consensus 284 ~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 284 TALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccc
Confidence 4667778888999999999999999999966 3899999999999999999999999998 99999998762111111
Q ss_pred CCCCCEEEEeCCChh---chHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh-cC
Q 026506 179 SGLADSIFLDLPQPW---LAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL-NF 230 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~---~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~-~f 230 (237)
...+|+|++|+|... ++++.+ ..++|-.+++ +.|. .++.+-+..|.+ ++
T Consensus 360 ~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvY--VSCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 360 GYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVY--VSCNPATLARDLAILASTGY 413 (432)
T ss_pred cCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEE--EeCCHHHHHHHHHHHHhCCe
Confidence 247899999998543 333333 3445555554 4444 667777788777 54
No 163
>PRK00536 speE spermidine synthase; Provisional
Probab=99.13 E-value=1.3e-09 Score=86.89 Aligned_cols=124 Identities=19% Similarity=0.039 Sum_probs=91.2
Q ss_pred hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~ 179 (237)
..+.. ..+||.+|.|-|+.+..++++ + .+|+.+|++++.++.+++.+.... . +.++++... +. +...
T Consensus 68 ~~h~~-pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~-----~~~~ 137 (262)
T PRK00536 68 CTKKE-LKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL-----DLDI 137 (262)
T ss_pred hhCCC-CCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh-----hccC
Confidence 34444 489999999999999999988 3 499999999999999999654321 1 344666541 21 1111
Q ss_pred CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe--CC--HHHHHHHHHHHHhcCcccccc
Q 026506 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS--PC--IEQVQRSCESLRLNFTGKESC 236 (237)
Q Consensus 180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~--~~--~~~~~~~~~~l~~~f~~v~~~ 236 (237)
+.||+|++|...+.+..+.+.+.|+|||.++.-+ |. ......+.+.+++.|+.+..+
T Consensus 138 ~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y 198 (262)
T PRK00536 138 KKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPF 198 (262)
T ss_pred CcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEE
Confidence 6799999997666778999999999999999754 33 344567777777778866543
No 164
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=99.12 E-value=5.6e-09 Score=80.09 Aligned_cols=160 Identities=21% Similarity=0.267 Sum_probs=100.5
Q ss_pred CCCCceEEeccCc----EEEEECCCHHHHhhhcCCcccccccccHHHH---HHhcCCCCCCEEEEEccCccHHHHHHHHH
Q 026506 57 KPFGSMVFSNKGG----FVYLLAPTPELWTLVLSHRTQILYIADISFV---IMYLELVPGCLVLESGTGSGSLTTSLARA 129 (237)
Q Consensus 57 ~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vldiG~G~G~~~~~~~~~ 129 (237)
..||+......+. .++.+.|..... .+.+ +..+.+++|.+||-+|+.+|....+++.-
T Consensus 30 ~vYGEk~i~~~~~~~~~eYR~W~P~RSKL---------------aAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDI 94 (229)
T PF01269_consen 30 SVYGEKRISVEGEGKKVEYRVWNPFRSKL---------------AAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDI 94 (229)
T ss_dssp -SSSSEEEEETTE---EEEEEE-TTT-HH---------------HHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHH
T ss_pred cccCceeEeecCCCCccceeecCchhhHH---------------HHHHHcCccccCCCCCCEEEEecccCCCccchhhhc
Confidence 3566666665555 556666643311 1112 23456889999999999999999999999
Q ss_pred hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhc---hHHHHHhcccCC
Q 026506 130 VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL---AIPSAKKMLKQD 206 (237)
Q Consensus 130 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~---~l~~~~~~L~~g 206 (237)
.++.+.|+++|.++......-...++.. | +-.+.+|+.........-+.+|+|+.|...+.+ ++.++...||+|
T Consensus 95 vg~~G~VYaVEfs~r~~rdL~~la~~R~--N-IiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~g 171 (229)
T PF01269_consen 95 VGPDGVVYAVEFSPRSMRDLLNLAKKRP--N-IIPILEDARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPG 171 (229)
T ss_dssp HTTTSEEEEEESSHHHHHHHHHHHHHST--T-EEEEES-TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEE
T ss_pred cCCCCcEEEEEecchhHHHHHHHhccCC--c-eeeeeccCCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCC
Confidence 9888999999999966555444333322 4 888999998522222233589999999876653 578888999999
Q ss_pred CEEEEEeC--C-------HHHHHHHHHHHHh-cCcccc
Q 026506 207 GILCSFSP--C-------IEQVQRSCESLRL-NFTGKE 234 (237)
Q Consensus 207 G~l~~~~~--~-------~~~~~~~~~~l~~-~f~~v~ 234 (237)
|.+++..- + ..-..+..+.|++ +|.-++
T Consensus 172 G~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 172 GHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp EEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred cEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 99886531 1 1224556667776 576433
No 165
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.12 E-value=7e-10 Score=83.35 Aligned_cols=105 Identities=22% Similarity=0.283 Sum_probs=79.1
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCC
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLAD 183 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D 183 (237)
+.||.+|||+|||.|.+...+... .....+++|++++.+..+.++ | +.++++|+.+ ..+++ +.||
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d---~sFD 77 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPD---QSFD 77 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCC---CCcc
Confidence 468899999999999999888876 358899999999998888773 5 6678888875 23555 8999
Q ss_pred EEEEeC-----CChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHH
Q 026506 184 SIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (237)
Q Consensus 184 ~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l 226 (237)
.|+++- ..|..+|+++. +-|...++.-|+-...+.-++.+
T Consensus 78 ~VIlsqtLQ~~~~P~~vL~Eml---RVgr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 78 YVILSQTLQAVRRPDEVLEEML---RVGRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred EEehHhHHHhHhHHHHHHHHHH---HhcCeEEEEecChHHHHHHHHHH
Confidence 999753 35555666664 55777787778776655554544
No 166
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.12 E-value=1.3e-09 Score=95.42 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=100.8
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADS 184 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~ 184 (237)
..+..+||||||.|.++..+|... |...++|+|++...+..+.+.....++.| +.+...|+.. ..++. +.+|.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~---~sv~~ 420 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPN---NSLDG 420 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCc---ccccE
Confidence 346799999999999999999884 77899999999999998888888888877 7777777642 23444 77999
Q ss_pred EEEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-c-Ccc
Q 026506 185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N-FTG 232 (237)
Q Consensus 185 v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~-f~~ 232 (237)
|+++.|+|| ++++.+.+.|+|||.+.+-+...+....+++.+.+ + |..
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence 999999997 47999999999999999888888888888888776 3 653
No 167
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.12 E-value=6e-10 Score=85.27 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=78.1
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCCCCCCCE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADS 184 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~D~ 184 (237)
..+.++||++||+|.+++.++.+ +..+++++|.++.+++.+++|++.++..+++++..+|+... .+.. ....+|+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~-~~~~~dv 124 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK-KPTFDNV 124 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-cCCCceE
Confidence 35789999999999999988887 34689999999999999999999988765689999998541 1111 0124899
Q ss_pred EEEeCCChhc----hHHHH--HhcccCCCEEEEEeC
Q 026506 185 IFLDLPQPWL----AIPSA--KKMLKQDGILCSFSP 214 (237)
Q Consensus 185 v~~~~~~~~~----~l~~~--~~~L~~gG~l~~~~~ 214 (237)
|+.|+|-... +++.+ ...|+++|.+++-.+
T Consensus 125 v~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 125 IYLDPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred EEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 9999874432 33333 235788888776544
No 168
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.12 E-value=1.2e-10 Score=93.99 Aligned_cols=104 Identities=23% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccCCCCCC-CCCCCCCE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFPD-EFSGLADS 184 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~-~~~~~~D~ 184 (237)
..+.+|||+.|=+|+++++.+. +++.+|+.+|.|..+++.+++|+..++++ .++++...|+.+. +.. ...++||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~-l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF-LKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH-HHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH-HHHHhcCCCCCE
Confidence 3578999999999999976554 46678999999999999999999999875 5689999999751 110 11268999
Q ss_pred EEEeCCCh-----------hchHHHHHhcccCCCEEEEEe
Q 026506 185 IFLDLPQP-----------WLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 185 v~~~~~~~-----------~~~l~~~~~~L~~gG~l~~~~ 213 (237)
|++|+|.. ..++..+.++|+|||.|++.+
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 99999843 357888999999999987554
No 169
>PHA03411 putative methyltransferase; Provisional
Probab=99.12 E-value=1.7e-09 Score=86.18 Aligned_cols=115 Identities=9% Similarity=0.008 Sum_probs=81.8
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
...+.+|||+|||+|.++..++... +..+++++|+++.+++.++++. .+ +++..+|+.+.. .. ..||+|
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~-----~~-v~~v~~D~~e~~-~~---~kFDlI 130 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL-----PE-AEWITSDVFEFE-SN---EKFDVV 130 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----cC-CEEEECchhhhc-cc---CCCcEE
Confidence 3456799999999999998887764 3368999999999999998863 23 788899987522 22 679999
Q ss_pred EEeCCCh-------------------------hchHHHHHhcccCCCEEEEEeCCH------HHHHHHHHHHHh-cCc
Q 026506 186 FLDLPQP-------------------------WLAIPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL-NFT 231 (237)
Q Consensus 186 ~~~~~~~-------------------------~~~l~~~~~~L~~gG~l~~~~~~~------~~~~~~~~~l~~-~f~ 231 (237)
+.|+|-. .+.+......|+|+|.+.+.-... -...+..+.+++ ||.
T Consensus 131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 9987621 124566678899999765442111 113566677777 664
No 170
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.12 E-value=7.7e-10 Score=89.18 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=85.7
Q ss_pred hcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccccCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~ 179 (237)
..+.+| .+||.||.|.|+.+..++++. +..+++.+|+++..++.+++.+.... . +.+++++..|..+ +-....
T Consensus 72 ~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~--~v~~~~ 147 (282)
T COG0421 72 LAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE--FLRDCE 147 (282)
T ss_pred hhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH--HHHhCC
Confidence 445566 699999999999999999985 45899999999999999999876432 2 3678999999875 222122
Q ss_pred CCCCEEEEeCCCh---------hchHHHHHhcccCCCEEEEE
Q 026506 180 GLADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 180 ~~~D~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~ 212 (237)
.+||+|++|..++ +++++.+.+.|+++|+++..
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4799999987655 57899999999999999977
No 171
>PLN02740 Alcohol dehydrogenase-like
Probab=99.12 E-value=8.7e-10 Score=93.71 Aligned_cols=184 Identities=15% Similarity=0.164 Sum_probs=108.6
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC-C-------Cc----------eEE--eccCcEE-E
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP-F-------GS----------MVF--SNKGGFV-Y 72 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-------g~----------~~~--~~~~~~~-~ 72 (237)
..|++||||++....+ ||.|..|+.|..+.|...... + |. ... ...|+|. |
T Consensus 85 ~~~~vGdrV~~~~~~~--------cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey 156 (381)
T PLN02740 85 EDLKAGDHVIPIFNGE--------CGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEY 156 (381)
T ss_pred CcCCCCCEEEecCCCC--------CCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeE
Confidence 4689999999987666 888999988887777642210 0 00 000 0134444 4
Q ss_pred EECCCHHHHhhhcCCc-----ccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH
Q 026506 73 LLAPTPELWTLVLSHR-----TQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE 143 (237)
Q Consensus 73 ~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~ 143 (237)
...|.... ..++.. ...+. ....++ +....++++|++||.+|+|+ |..++++++..+ ..+|+++|.++
T Consensus 157 ~~v~~~~~--~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~ 233 (381)
T PLN02740 157 TVLDSACV--VKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINP 233 (381)
T ss_pred EEEehHHe--EECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCCh
Confidence 44432221 111111 11111 111111 22346788999999999988 778888888863 34799999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEEc--cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506 144 QRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (237)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 214 (237)
+.++.+++ .|.+..++.... ++.+ .+.....+++|+|+.....+ ..++.+.+.+++| |++++++.
T Consensus 234 ~r~~~a~~----~Ga~~~i~~~~~~~~~~~-~v~~~~~~g~dvvid~~G~~-~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 234 EKFEKGKE----MGITDFINPKDSDKPVHE-RIREMTGGGVDYSFECAGNV-EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred HHHHHHHH----cCCcEEEecccccchHHH-HHHHHhCCCCCEEEECCCCh-HHHHHHHHhhhcCCCEEEEEcc
Confidence 99998876 465432332211 1111 01111113699977655544 4788999999997 99887763
No 172
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=1.2e-09 Score=89.77 Aligned_cols=108 Identities=24% Similarity=0.333 Sum_probs=91.3
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..+|.+|+|+.+|.|.+++.+|..- ..+|+++|+||.+++.+++|+..+++.+.+..+.+|..+..... +.+|.|
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrI 260 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADRI 260 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCEE
Confidence 4569999999999999999999873 34499999999999999999999999988999999998632222 679999
Q ss_pred EEeCCC-hhchHHHHHhcccCCCEEEEEeCCHHH
Q 026506 186 FLDLPQ-PWLAIPSAKKMLKQDGILCSFSPCIEQ 218 (237)
Q Consensus 186 ~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~~~~ 218 (237)
+++.|. ...++..+.+.+++||++..+....+.
T Consensus 261 im~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 261 IMGLPKSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred EeCCCCcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 998874 367899999999999999988765443
No 173
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.11 E-value=1.2e-09 Score=74.51 Aligned_cols=97 Identities=26% Similarity=0.241 Sum_probs=73.5
Q ss_pred EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (237)
Q Consensus 111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 190 (237)
+++|+|||.|..+..++. ....+++++|.++..++.+++....... ..+++...|+.+..... .+++|+|+.+.+
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEA--DESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhcccc--CCceEEEEEccc
Confidence 489999999999988877 2457999999999999998864433333 34888889887633211 267999988665
Q ss_pred C------hhchHHHHHhcccCCCEEEEE
Q 026506 191 Q------PWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 191 ~------~~~~l~~~~~~L~~gG~l~~~ 212 (237)
. ....++.+.+.|+|||.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 246789999999999999854
No 174
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=1e-09 Score=87.63 Aligned_cols=185 Identities=17% Similarity=0.146 Sum_probs=111.0
Q ss_pred CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCC--------CceEEeccCcEE-EEEC-CCHHHHh
Q 026506 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF--------GSMVFSNKGGFV-YLLA-PTPELWT 82 (237)
Q Consensus 13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------g~~~~~~~~~~~-~~~~-~~~~~~~ 82 (237)
.+.||+||+|+-...-. ||+|..|..+..+.|+.+-... |..-....|... +.+. .+...|.
T Consensus 80 V~~vk~GD~Viplf~p~--------CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYT 151 (375)
T KOG0022|consen 80 VTTVKPGDHVIPLFTPQ--------CGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYT 151 (375)
T ss_pred ccccCCCCEEeeccccC--------CCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEE
Confidence 46799999999766333 8999999988877776432211 111111112111 1111 0111111
Q ss_pred hhcCCcccccc---------------cccHHHHHHhcCCCCCCEEEEEccCccHHH-HHHHHHhCCCcEEEEEeCCHHHH
Q 026506 83 LVLSHRTQILY---------------IADISFVIMYLELVPGCLVLESGTGSGSLT-TSLARAVAPTGHVYTFDFHEQRA 146 (237)
Q Consensus 83 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~vldiG~G~G~~~-~~~~~~~~~~~~v~~vD~~~~~~ 146 (237)
-.......-+. ......+...+++.||.++..+|.|.-+++ ++-++.. ++++++++|+|++..
T Consensus 152 Vv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf 230 (375)
T KOG0022|consen 152 VVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKF 230 (375)
T ss_pred EeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHH
Confidence 00000111111 111123566778999999999999995554 4445554 568999999999999
Q ss_pred HHHHHHHHHcCCCCcEEEEEccccC---CCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEe
Q 026506 147 ASAREDFERTGVSSFVTVGVRDIQG---QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFS 213 (237)
Q Consensus 147 ~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~ 213 (237)
+.|++ +|+.+-++.. |... +.+.+.+++++|.-|....... ++.+++...+.| |.-++++
T Consensus 231 ~~ak~----fGaTe~iNp~--d~~~~i~evi~EmTdgGvDysfEc~G~~~-~m~~al~s~h~GwG~sv~iG 294 (375)
T KOG0022|consen 231 EKAKE----FGATEFINPK--DLKKPIQEVIIEMTDGGVDYSFECIGNVS-TMRAALESCHKGWGKSVVIG 294 (375)
T ss_pred HHHHh----cCcceecChh--hccccHHHHHHHHhcCCceEEEEecCCHH-HHHHHHHHhhcCCCeEEEEE
Confidence 99988 5765434433 3332 1122334588999888776655 889999999888 8776554
No 175
>PLN02827 Alcohol dehydrogenase-like
Probab=99.10 E-value=1.3e-09 Score=92.47 Aligned_cols=184 Identities=17% Similarity=0.178 Sum_probs=107.2
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCC---------------CceEE--eccCcEE-EEEC
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF---------------GSMVF--SNKGGFV-YLLA 75 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------g~~~~--~~~~~~~-~~~~ 75 (237)
..|++||||+.....+ ||.|.+|+.|..+.|...+... |.... ...|++. |...
T Consensus 83 ~~~~~GdrV~~~~~~~--------cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v 154 (378)
T PLN02827 83 TEFEKGDHVLTVFTGE--------CGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVV 154 (378)
T ss_pred cccCCCCEEEEecCCC--------CCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEe
Confidence 4689999999987666 8899999999888776432100 00000 0124444 3444
Q ss_pred CCHHHHhhhcCC-----cccccccc-cHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026506 76 PTPELWTLVLSH-----RTQILYIA-DISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRA 146 (237)
Q Consensus 76 ~~~~~~~~~~~~-----~~~~~~~~-~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~ 146 (237)
|....+ ..+. ....+... ..+. +....++.+|++||..|+|+ |.+++++++..+ ...++++|.+++..
T Consensus 155 ~~~~~~--~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~ 231 (378)
T PLN02827 155 HSGCAV--KVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKA 231 (378)
T ss_pred chhheE--ECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHH
Confidence 432211 1111 11111111 1111 22345678899999999988 778888888764 34688999999988
Q ss_pred HHHHHHHHHcCCCCcEEEEE--ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506 147 ASAREDFERTGVSSFVTVGV--RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (237)
Q Consensus 147 ~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 214 (237)
+.+++ .|++..++... .++.+ .+.....+++|+|+.....+ ..+..+.+.+++| |++++++.
T Consensus 232 ~~a~~----lGa~~~i~~~~~~~~~~~-~v~~~~~~g~d~vid~~G~~-~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 232 EKAKT----FGVTDFINPNDLSEPIQQ-VIKRMTGGGADYSFECVGDT-GIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred HHHHH----cCCcEEEcccccchHHHH-HHHHHhCCCCCEEEECCCCh-HHHHHHHHhhccCCCEEEEECC
Confidence 88866 46543222221 11111 11111124699977655443 3688899999999 99987764
No 176
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.09 E-value=1e-09 Score=85.09 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=68.9
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..++.+|||+|||+|..+..++... +..+++++|+|+++++.|+++. .+ +.+..+|+.+ +++. +.||+|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----~~-~~~~~~d~~~-~~~~---~sfD~V 109 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----PN-INIIQGSLFD-PFKD---NFFDLV 109 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----CC-CcEEEeeccC-CCCC---CCEEEE
Confidence 4567899999999999999998875 4578999999999999998853 22 5677888774 4544 789999
Q ss_pred EEeCC----C---hhchHHHHHhcccCCCEEEE
Q 026506 186 FLDLP----Q---PWLAIPSAKKMLKQDGILCS 211 (237)
Q Consensus 186 ~~~~~----~---~~~~l~~~~~~L~~gG~l~~ 211 (237)
+++.. . ....++++.+.+ ++.+++
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEE
Confidence 86321 1 234677777776 445554
No 177
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.09 E-value=1.1e-09 Score=91.96 Aligned_cols=181 Identities=15% Similarity=0.106 Sum_probs=106.5
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH----- 87 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 87 (237)
..|++||||......+ |+.|.+|..|..+.|...+. .| ....|++. |...|.... ..++.
T Consensus 73 ~~~~vGd~V~~~~~~~--------c~~c~~c~~g~~~~c~~~~~-~g---~~~~G~~aey~~v~~~~~--~~lP~~~s~~ 138 (347)
T PRK10309 73 DDLHPGDAVACVPLLP--------CFTCPECLRGFYSLCAKYDF-IG---SRRDGGNAEYIVVKRKNL--FALPTDMPIE 138 (347)
T ss_pred CCCCCCCEEEECCCcC--------CCCCcchhCcCcccCCCcce-ec---cCCCCccceeEEeehHHe--EECcCCCCHH
Confidence 4689999999977555 88999999998777763221 11 11234443 334332221 11121
Q ss_pred cccccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506 88 RTQILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (237)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~ 165 (237)
.+..+.+..... .+......++++||..|+|+ |..+.++++..+ ...+++++.+++..+.+++ .|.+..++..
T Consensus 139 ~aa~~~~~~~~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~ 213 (347)
T PRK10309 139 DGAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSR 213 (347)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCc
Confidence 111111211111 23445677899999999988 778888888863 3458899999998888765 4543322222
Q ss_pred EccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 166 VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 166 ~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
..+..+ ......+..+|.+++|.......+..+.+.|++||++++++.
T Consensus 214 ~~~~~~-~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 214 EMSAPQ-IQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred ccCHHH-HHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 111110 000011146884455554444588999999999999998863
No 178
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.09 E-value=1.3e-09 Score=92.32 Aligned_cols=184 Identities=17% Similarity=0.132 Sum_probs=106.8
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC--CCc-------------eEEe--ccCcEE-EEEC
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP--FGS-------------MVFS--NKGGFV-YLLA 75 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~g~-------------~~~~--~~~~~~-~~~~ 75 (237)
..|++||||.+....+ ||.|..|+.|..+.|...... +|. .... ..|++. |...
T Consensus 75 ~~~~~GdrV~~~~~~~--------cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v 146 (368)
T TIGR02818 75 TSVKVGDHVIPLYTAE--------CGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVV 146 (368)
T ss_pred ccCCCCCEEEEcCCCC--------CCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEe
Confidence 4689999999876556 899999999988777532100 000 0000 113333 3444
Q ss_pred CCHHHHhhhcCC-----cccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026506 76 PTPELWTLVLSH-----RTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRA 146 (237)
Q Consensus 76 ~~~~~~~~~~~~-----~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~ 146 (237)
|....+ .++. ....+. +...+. +.....++++++||..|+|+ |.+++++++.++ ..+|+++|.+++.+
T Consensus 147 ~~~~~~--~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~ 223 (368)
T TIGR02818 147 PEISLA--KINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKF 223 (368)
T ss_pred chhheE--ECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHH
Confidence 322211 1111 111111 111111 22445788999999999988 778888888863 24799999999999
Q ss_pred HHHHHHHHHcCCCCcEEEEE--ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506 147 ASAREDFERTGVSSFVTVGV--RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (237)
Q Consensus 147 ~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 214 (237)
+.+++ .|.+..++... .++.+ .+.....+++|+++.....+ ..+..+.+.++++ |+++.++.
T Consensus 224 ~~a~~----~Ga~~~i~~~~~~~~~~~-~v~~~~~~g~d~vid~~G~~-~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 224 ELAKK----LGATDCVNPNDYDKPIQE-VIVEITDGGVDYSFECIGNV-NVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred HHHHH----hCCCeEEcccccchhHHH-HHHHHhCCCCCEEEECCCCH-HHHHHHHHHhhcCCCeEEEEec
Confidence 98876 46543232221 11110 01111114699977655443 3788889999886 99887764
No 179
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.09 E-value=1.5e-09 Score=91.47 Aligned_cols=185 Identities=15% Similarity=0.020 Sum_probs=106.2
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccC-------CCCceEE--eccCcEE-EEECCCHHHHhh
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGK-------PFGSMVF--SNKGGFV-YLLAPTPELWTL 83 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~g~~~~--~~~~~~~-~~~~~~~~~~~~ 83 (237)
..|++||||.+....+ ||.|..|..|..+.|..... ..|.... ...|++. |...|....+
T Consensus 74 ~~~~~GdrV~~~~~~~--------cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~-- 143 (358)
T TIGR03451 74 TDVAPGDYVVLNWRAV--------CGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCT-- 143 (358)
T ss_pred cccCCCCEEEEccCCC--------CCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheE--
Confidence 4689999999977666 88899998887766652110 0010000 0123333 3333322111
Q ss_pred hcCC-----cccccc-cccHH--HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026506 84 VLSH-----RTQILY-IADIS--FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154 (237)
Q Consensus 84 ~~~~-----~~~~~~-~~~~~--~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 154 (237)
.++. .+..+. ....+ .+....++.++++||..|+|+ |..+.++++..+ ..+|+++|.+++..+.+++
T Consensus 144 ~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~--- 219 (358)
T TIGR03451 144 KVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE--- 219 (358)
T ss_pred ECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH---
Confidence 1111 111111 11111 123345678999999999988 778888888763 3469999999999998866
Q ss_pred HcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 155 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.|.+..++....+..+.......+.++|+|+-....+ ..++.+.+.+++||++++++.
T Consensus 220 -~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~-~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 220 -FGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGRP-ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -cCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCCH-HHHHHHHHHhccCCEEEEECC
Confidence 4653323322222211000001113699977555433 478889999999999998764
No 180
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.09 E-value=2.1e-09 Score=87.18 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=70.0
Q ss_pred HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC
Q 026506 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD 176 (237)
Q Consensus 98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 176 (237)
..+++.+.+.++..++|.+||.|+.+..++...++.++|+++|.++++++.+++++.. .+++.++++|+.+.. ...
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHH
Confidence 3477788888999999999999999999999976568999999999999999998754 345999999987611 111
Q ss_pred CCCCCCCEEEEeC
Q 026506 177 EFSGLADSIFLDL 189 (237)
Q Consensus 177 ~~~~~~D~v~~~~ 189 (237)
.....+|.|++|.
T Consensus 86 ~~~~~vDgIl~DL 98 (296)
T PRK00050 86 EGLGKVDGILLDL 98 (296)
T ss_pred cCCCccCEEEECC
Confidence 1012699998754
No 181
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.08 E-value=6.7e-10 Score=88.43 Aligned_cols=125 Identities=23% Similarity=0.247 Sum_probs=91.8
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEEccccCCCCCCCCCC-CCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV---SSFVTVGVRDIQGQGFPDEFSG-LAD 183 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~~-~~D 183 (237)
...+||.||.|.|..+..++++- +..+++++|+++..++.+++.+..... +.+++++.+|... +-..... +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~--~l~~~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK--FLKETQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH--HHHTSSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH--HHHhccCCccc
Confidence 56899999999999998888763 347899999999999999998765321 3569999999875 1111114 799
Q ss_pred EEEEeCCCh---------hchHHHHHhcccCCCEEEEEeC--C--HHHHHHHHHHHHhcCccccc
Q 026506 184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSP--C--IEQVQRSCESLRLNFTGKES 235 (237)
Q Consensus 184 ~v~~~~~~~---------~~~l~~~~~~L~~gG~l~~~~~--~--~~~~~~~~~~l~~~f~~v~~ 235 (237)
+|++|..++ .++++.+.+.|+|+|.+++... . ......+.+.+++.|..+..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~ 217 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKP 217 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEE
Confidence 999988764 3689999999999999997652 2 34456667777777776544
No 182
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.08 E-value=2.2e-09 Score=90.36 Aligned_cols=179 Identities=20% Similarity=0.164 Sum_probs=104.0
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccC-CCCceEEeccCcEE-EEECCCHHHHh--hhcCCcc
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGK-PFGSMVFSNKGGFV-YLLAPTPELWT--LVLSHRT 89 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~ 89 (237)
..|++||||.+....+ ||.|.+|+.|..+.|+.... ..|. ....|.+. |...|....+. ..++...
T Consensus 76 ~~~~vGdrV~~~~~~~--------cg~C~~c~~g~~~~c~~~~~~~~g~--~~~~G~~aey~~~~~~~~~~~P~~~~~~a 145 (355)
T cd08230 76 SGLSPGDLVVPTVRRP--------PGKCLNCRIGRPDFCETGEYTERGI--KGLHGFMREYFVDDPEYLVKVPPSLADVG 145 (355)
T ss_pred CCCCCCCEEEeccccC--------CCcChhhhCcCcccCCCcceeccCc--CCCCccceeEEEeccccEEECCCCCCcce
Confidence 3699999999876555 88899998887777753210 0010 01234443 33333222111 0111111
Q ss_pred cccccccHHH-HH-------HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeC---CHHHHHHHHHHHHHcC
Q 026506 90 QILYIADISF-VI-------MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF---HEQRAASAREDFERTG 157 (237)
Q Consensus 90 ~~~~~~~~~~-~~-------~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~---~~~~~~~a~~~~~~~~ 157 (237)
....+..... .+ ......++++||.+|+|+ |.++.++++..+ .++++++. +++.++.+++ .|
T Consensus 146 ~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~G 219 (355)
T cd08230 146 VLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LG 219 (355)
T ss_pred eecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cC
Confidence 1122222111 11 112256889999999998 888888888863 47998886 6788887765 45
Q ss_pred CCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 158 VSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 158 ~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.+. +.....+..+ .. ..+.+|+||.....+. .+..+.+.|+++|++++++.
T Consensus 220 a~~-v~~~~~~~~~--~~--~~~~~d~vid~~g~~~-~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 220 ATY-VNSSKTPVAE--VK--LVGEFDLIIEATGVPP-LAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEE-ecCCccchhh--hh--hcCCCCEEEECcCCHH-HHHHHHHHccCCcEEEEEec
Confidence 432 2222222211 11 1256999776665433 78899999999999998764
No 183
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.08 E-value=2e-09 Score=90.61 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=81.1
Q ss_pred CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCC----------
Q 026506 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE---------- 177 (237)
Q Consensus 110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~---------- 177 (237)
.++||++||+|.+++.+++.. .+|+++|.++.+++.+++|+..+++.+ +++..+|+.+. .+...
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhccccccccccc
Confidence 579999999999999888763 589999999999999999999988875 99999998641 11100
Q ss_pred -CCCCCCEEEEeCCChhchHHHHHhcc-cCCCEEEEEeCCHHHHHHHHHHHHhcCc
Q 026506 178 -FSGLADSIFLDLPQPWLAIPSAKKML-KQDGILCSFSPCIEQVQRSCESLRLNFT 231 (237)
Q Consensus 178 -~~~~~D~v~~~~~~~~~~l~~~~~~L-~~gG~l~~~~~~~~~~~~~~~~l~~~f~ 231 (237)
....||+|++|+|... .-+.+.+.| ++++.++ ++-...++.+-+..|.++|.
T Consensus 284 ~~~~~~D~v~lDPPR~G-~~~~~l~~l~~~~~ivy-vSC~p~tlarDl~~L~~gY~ 337 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAG-LDDETLKLVQAYERILY-ISCNPETLCENLETLSQTHK 337 (362)
T ss_pred ccCCCCCEEEECCCCCC-CcHHHHHHHHccCCEEE-EEeCHHHHHHHHHHHcCCcE
Confidence 0125899999999543 333333333 3555555 33333556666666655554
No 184
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.08 E-value=1.2e-09 Score=83.12 Aligned_cols=119 Identities=24% Similarity=0.267 Sum_probs=90.0
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC-----CCCCCC
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-----FSGLAD 183 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-----~~~~~D 183 (237)
+.+|||||+|||..+.++++.+ |.....-.|.++..+...+..+...+..|.......|+....++-. ..+.||
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 3369999999999999999998 5578888999999988888888877877755667778775433321 125799
Q ss_pred EEEE-eC------CChhchHHHHHhcccCCCEEEEEeCCH-------HHHHHHHHHHHh
Q 026506 184 SIFL-DL------PQPWLAIPSAKKMLKQDGILCSFSPCI-------EQVQRSCESLRL 228 (237)
Q Consensus 184 ~v~~-~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~-------~~~~~~~~~l~~ 228 (237)
.|+. |+ .....+++.+.+.|++||.|++|+|+. +..+++-..||+
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~ 163 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRS 163 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhc
Confidence 9985 22 122357899999999999999999875 335666666665
No 185
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.07 E-value=3.3e-09 Score=87.11 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=61.7
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEE-ccccC--CCCCCCCCCCCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGV-RDIQG--QGFPDEFSGLAD 183 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~--~~~~~~~~~~~D 183 (237)
.+.++||||||+|.+...++... ...+++++|+++.+++.|+++++.+ ++.+++++.. .|... ..+. ...+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~-~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII-HKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc-ccCCceE
Confidence 46799999999998887777765 3578999999999999999999998 7877787754 22221 1111 0126799
Q ss_pred EEEEeCC
Q 026506 184 SIFLDLP 190 (237)
Q Consensus 184 ~v~~~~~ 190 (237)
+|++|+|
T Consensus 192 livcNPP 198 (321)
T PRK11727 192 ATLCNPP 198 (321)
T ss_pred EEEeCCC
Confidence 9999987
No 186
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.07 E-value=2.3e-09 Score=89.87 Aligned_cols=124 Identities=19% Similarity=0.171 Sum_probs=84.4
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC--
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-- 177 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 177 (237)
+.+.++..+ .++||++||+|.+++.+++.. .+|+++|+++++++.|++|+..+++.+ +++..+|+.+. ++..
T Consensus 190 v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~-~~~~~~ 263 (353)
T TIGR02143 190 ACEVTQGSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEF-TQAMNG 263 (353)
T ss_pred HHHHhhcCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHH-HHHHhh
Confidence 334444333 479999999999999888774 589999999999999999999998876 99999998641 1100
Q ss_pred ---C---------CCCCCEEEEeCCChhchHHHHHh-cccCCCEEEEEeCCHHHHHHHHHHHHhcCc
Q 026506 178 ---F---------SGLADSIFLDLPQPWLAIPSAKK-MLKQDGILCSFSPCIEQVQRSCESLRLNFT 231 (237)
Q Consensus 178 ---~---------~~~~D~v~~~~~~~~~~l~~~~~-~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~ 231 (237)
. ...||+|++|+|... ..+.+.+ +.+|++.++ ++-...++.+-+..|.++|.
T Consensus 264 ~~~~~~~~~~~~~~~~~d~v~lDPPR~G-~~~~~l~~l~~~~~ivY-vsC~p~tlaRDl~~L~~~Y~ 328 (353)
T TIGR02143 264 VREFRRLKGIDLKSYNCSTIFVDPPRAG-LDPDTCKLVQAYERILY-ISCNPETLKANLEQLSETHR 328 (353)
T ss_pred ccccccccccccccCCCCEEEECCCCCC-CcHHHHHHHHcCCcEEE-EEcCHHHHHHHHHHHhcCcE
Confidence 0 023899999999543 3333322 234665555 33334566666666655443
No 187
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.06 E-value=1.2e-09 Score=92.24 Aligned_cols=102 Identities=20% Similarity=0.200 Sum_probs=83.2
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
++.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++.+ +++...|+.. .+.. ...||+|++
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~-~l~~--~~~fD~V~l 131 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANA-LLHE--ERKFDVVDI 131 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHH-HHhh--cCCCCEEEE
Confidence 357999999999999999988753 4689999999999999999999998876 7788888864 1221 156999999
Q ss_pred eCCCh-hchHHHHHhcccCCCEEEEEeC
Q 026506 188 DLPQP-WLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 188 ~~~~~-~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
|++.. ..++..+.+.+++||.+++...
T Consensus 132 DP~Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 132 DPFGSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEEec
Confidence 98644 3577888899999999997644
No 188
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.06 E-value=1.4e-09 Score=88.59 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=73.2
Q ss_pred HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (237)
Q Consensus 97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 176 (237)
+..++..+.+.++++|||+|||+|.++..++.. ..+++++|+++.+++.+++++...+...++++..+|+.+..+
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-- 99 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--
Confidence 334777788889999999999999999998876 267999999999999999998876644459999999986333
Q ss_pred CCCCCCCEEEEeCCChh
Q 026506 177 EFSGLADSIFLDLPQPW 193 (237)
Q Consensus 177 ~~~~~~D~v~~~~~~~~ 193 (237)
..+|.|+.|.|-..
T Consensus 100 ---~~~d~VvaNlPY~I 113 (294)
T PTZ00338 100 ---PYFDVCVANVPYQI 113 (294)
T ss_pred ---cccCEEEecCCccc
Confidence 45899999988553
No 189
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.05 E-value=8.5e-09 Score=81.46 Aligned_cols=99 Identities=26% Similarity=0.374 Sum_probs=71.5
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..++.+|||+|||+|.++..++.. ..+++++|+++.+++.|+++....+..+++++..+|+. ... +.||+|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~---~~fD~v 131 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLL---GRFDTV 131 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hcc---CCcCEE
Confidence 456789999999999999888865 25699999999999999999887776455888888853 222 679999
Q ss_pred EEeC-----CCh--hchHHHHHhcccCCCEEEEEeC
Q 026506 186 FLDL-----PQP--WLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 186 ~~~~-----~~~--~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++.. +.+ ...++.+.+.++ +|.++.+.+
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~~~ 166 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTFAP 166 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEECC
Confidence 7632 211 245666666554 444444544
No 190
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.04 E-value=1.3e-09 Score=88.48 Aligned_cols=103 Identities=25% Similarity=0.305 Sum_probs=82.8
Q ss_pred HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
..-++-.+.+|||+|||+|-+++..|++ ++.+|+++|-+ ++.+.|++.+..++..+.++++.+.+.+..+|. .+
T Consensus 54 ~n~~lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~---eK 127 (346)
T KOG1499|consen 54 QNKHLFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDIELPV---EK 127 (346)
T ss_pred cchhhcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEEecCc---cc
Confidence 3334567899999999999999888777 46899999975 556999999999999998999999888765663 78
Q ss_pred CCEEEEeCCChhchHHHH--------HhcccCCCEEE
Q 026506 182 ADSIFLDLPQPWLAIPSA--------KKMLKQDGILC 210 (237)
Q Consensus 182 ~D~v~~~~~~~~~~l~~~--------~~~L~~gG~l~ 210 (237)
+|+|+...-..+.+++++ -+.|+|||.++
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 999998776665444443 46789999886
No 191
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.04 E-value=6.4e-10 Score=82.12 Aligned_cols=77 Identities=25% Similarity=0.315 Sum_probs=56.2
Q ss_pred CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC-CCCCCCEEEEe
Q 026506 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-FSGLADSIFLD 188 (237)
Q Consensus 110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~~D~v~~~ 188 (237)
..|+|+.||.|+.++++|+.. .+|+++|+++.+++.|+.|++..|+.++++++.+|+.+. .... ....+|+||++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~-~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL-LKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH-GGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH-HhhccccccccEEEEC
Confidence 379999999999999999984 689999999999999999999999888899999999862 1111 00128999998
Q ss_pred CC
Q 026506 189 LP 190 (237)
Q Consensus 189 ~~ 190 (237)
+|
T Consensus 77 PP 78 (163)
T PF09445_consen 77 PP 78 (163)
T ss_dssp --
T ss_pred CC
Confidence 86
No 192
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.02 E-value=3.2e-09 Score=89.81 Aligned_cols=186 Identities=17% Similarity=0.179 Sum_probs=106.1
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCC---------------CceEE--eccCcEE-EEEC
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF---------------GSMVF--SNKGGFV-YLLA 75 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------g~~~~--~~~~~~~-~~~~ 75 (237)
..|++||||......+ ||.|..|+.|..+.|...+... |.... ...|++. |...
T Consensus 76 ~~~~vGdrV~~~~~~~--------cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v 147 (368)
T cd08300 76 TSVKPGDHVIPLYTPE--------CGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVV 147 (368)
T ss_pred ccCCCCCEEEEcCCCC--------CCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEE
Confidence 4589999999876555 8999999988777775332100 00000 0112333 3333
Q ss_pred CCHHHHhh--hcC-Ccccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026506 76 PTPELWTL--VLS-HRTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS 148 (237)
Q Consensus 76 ~~~~~~~~--~~~-~~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~ 148 (237)
|....+.. .++ .....+. +...+. +.....++++++||..|+|+ |.++.++++..+ ..++++++.+++.++.
T Consensus 148 ~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~ 226 (368)
T cd08300 148 AEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFEL 226 (368)
T ss_pred chhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHH
Confidence 32211110 011 1111111 111111 23446688999999999887 777888888863 3479999999999888
Q ss_pred HHHHHHHcCCCCcEEEEEc--cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506 149 AREDFERTGVSSFVTVGVR--DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (237)
Q Consensus 149 a~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 214 (237)
+++ .|.+..++.... ++.+ .......+++|+|+...... ..+..+.+.++++ |+++.++.
T Consensus 227 ~~~----lGa~~~i~~~~~~~~~~~-~v~~~~~~g~d~vid~~g~~-~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 227 AKK----FGATDCVNPKDHDKPIQQ-VLVEMTDGGVDYTFECIGNV-KVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred HHH----cCCCEEEcccccchHHHH-HHHHHhCCCCcEEEECCCCh-HHHHHHHHhhccCCCeEEEEcc
Confidence 865 465432332221 1111 01111124699987655433 3788899999987 99987753
No 193
>PRK06202 hypothetical protein; Provisional
Probab=99.02 E-value=4.5e-09 Score=83.24 Aligned_cols=93 Identities=20% Similarity=0.154 Sum_probs=66.0
Q ss_pred CCCCCCEEEEEccCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 105 ELVPGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 105 ~~~~~~~vldiG~G~G~~~~~~~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
...++.+|||+|||+|.++..++... ++..+++++|+++++++.|+++....+ +.+...+......+. +.
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~---~~ 129 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEG---ER 129 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccC---CC
Confidence 34567899999999999988887653 334689999999999999988754322 444555443322332 68
Q ss_pred CCEEEEe-----CCCh--hchHHHHHhccc
Q 026506 182 ADSIFLD-----LPQP--WLAIPSAKKMLK 204 (237)
Q Consensus 182 ~D~v~~~-----~~~~--~~~l~~~~~~L~ 204 (237)
||+|+++ .+++ ..+++++.+.++
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 9999864 3332 358889998887
No 194
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.01 E-value=3.4e-09 Score=82.72 Aligned_cols=106 Identities=11% Similarity=-0.035 Sum_probs=76.7
Q ss_pred cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH------------HcCCCCcEEEEEccccC
Q 026506 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE------------RTGVSSFVTVGVRDIQG 171 (237)
Q Consensus 104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~------------~~~~~~~i~~~~~d~~~ 171 (237)
+...++.+||+.|||.|..+..++.+ +.+|+++|+|+.+++.+.+... ... ...+++.++|+++
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~ 114 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFN 114 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-cCceEEEEccCcC
Confidence 34456789999999999999999887 3679999999999998765210 011 1248999999997
Q ss_pred CCCCCCCCCCCCEEEEe-----CC--ChhchHHHHHhcccCCCEEEEEe
Q 026506 172 QGFPDEFSGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 172 ~~~~~~~~~~~D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
........+.||.|+.. .+ ....+.+.+.++|+|||.++++.
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 43222223679998632 22 22368899999999999987664
No 195
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.01 E-value=2.9e-09 Score=83.38 Aligned_cols=87 Identities=26% Similarity=0.320 Sum_probs=74.2
Q ss_pred cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (237)
Q Consensus 96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 175 (237)
.+..+++.+++++++.|||+|.|||.++..+++. +++|+++|+++.++....+++......+++++..+|+...++|
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 3345788889999999999999999999999988 3899999999999999999886555557899999999875554
Q ss_pred CCCCCCCCEEEEeCC
Q 026506 176 DEFSGLADSIFLDLP 190 (237)
Q Consensus 176 ~~~~~~~D~v~~~~~ 190 (237)
.||.++.|.|
T Consensus 123 -----~fd~cVsNlP 132 (315)
T KOG0820|consen 123 -----RFDGCVSNLP 132 (315)
T ss_pred -----ccceeeccCC
Confidence 4999998765
No 196
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.00 E-value=6.3e-09 Score=79.18 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=83.0
Q ss_pred HHHHHHhcCCCC--CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CC
Q 026506 97 ISFVIMYLELVP--GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QG 173 (237)
Q Consensus 97 ~~~~~~~~~~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~ 173 (237)
....++++.... ..-|||||||+|..+..+... ....+++|+|+.|++.|.+.-- .| ++..+|+-+ .+
T Consensus 37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~-eg-----dlil~DMG~Glp 107 (270)
T KOG1541|consen 37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVEREL-EG-----DLILCDMGEGLP 107 (270)
T ss_pred HHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhh-hc-----CeeeeecCCCCC
Confidence 334556665555 678999999999988766654 3678999999999999987321 12 345566653 45
Q ss_pred CCCCCCCCCCEEEEeCC------------Ch----hchHHHHHhcccCCCEEE--EEeCCHHHHHHHHHHHHh-cCcc
Q 026506 174 FPDEFSGLADSIFLDLP------------QP----WLAIPSAKKMLKQDGILC--SFSPCIEQVQRSCESLRL-NFTG 232 (237)
Q Consensus 174 ~~~~~~~~~D~v~~~~~------------~~----~~~l~~~~~~L~~gG~l~--~~~~~~~~~~~~~~~l~~-~f~~ 232 (237)
+.+ +.||-++.-.. .| ..++..++..|++|++.+ +|--+..|.+.++..... ||..
T Consensus 108 frp---GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 108 FRP---GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred CCC---CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCC
Confidence 555 88998864111 11 136788999999999865 334445666666664444 7753
No 197
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.99 E-value=9.4e-09 Score=82.69 Aligned_cols=87 Identities=25% Similarity=0.304 Sum_probs=70.1
Q ss_pred cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (237)
Q Consensus 96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 175 (237)
....+++.++..++++|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. . .++++..+|+.+..+
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~~- 89 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVDL- 89 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCCc-
Confidence 3344777778888999999999999999999987 26899999999999999988753 2 349999999976333
Q ss_pred CCCCCCCCEEEEeCCChh
Q 026506 176 DEFSGLADSIFLDLPQPW 193 (237)
Q Consensus 176 ~~~~~~~D~v~~~~~~~~ 193 (237)
..+|.|+.|.|-..
T Consensus 90 ----~~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 ----PEFNKVVSNLPYQI 103 (258)
T ss_pred ----hhceEEEEcCCccc
Confidence 34799999988543
No 198
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=98.99 E-value=7.5e-09 Score=87.60 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=105.3
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC----------------CCceEEe--ccCcEE-EEE
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP----------------FGSMVFS--NKGGFV-YLL 74 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------~g~~~~~--~~~~~~-~~~ 74 (237)
..|++||||++....+ |+.|.+|..|..+.|...... .|..... ..|++. |..
T Consensus 76 ~~~~~GdrV~~~~~~~--------c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~ 147 (369)
T cd08301 76 TDLKPGDHVLPVFTGE--------CKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTV 147 (369)
T ss_pred CccccCCEEEEccCCC--------CCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEE
Confidence 4689999999877555 899999999888777643211 0000000 123333 333
Q ss_pred CCCHHHHhh--hcCC-cccccc-cccHH--HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026506 75 APTPELWTL--VLSH-RTQILY-IADIS--FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA 147 (237)
Q Consensus 75 ~~~~~~~~~--~~~~-~~~~~~-~~~~~--~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~ 147 (237)
.|....+.. .++. ....+. ....+ .+....++.+|++||..|+|+ |.++.++++..+ ..++++++.+++..+
T Consensus 148 v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~ 226 (369)
T cd08301 148 VHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFE 226 (369)
T ss_pred EecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHH
Confidence 332211100 0010 111111 11111 123345688999999999887 777888888763 347999999999988
Q ss_pred HHHHHHHHcCCCCcEEEEEc--cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506 148 SAREDFERTGVSSFVTVGVR--DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (237)
Q Consensus 148 ~a~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 214 (237)
.+++ .|.+..++.... ++. ..+.....+.+|+++-.... ...+..+.+.+++| |+++.++.
T Consensus 227 ~~~~----~Ga~~~i~~~~~~~~~~-~~v~~~~~~~~d~vid~~G~-~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 227 QAKK----FGVTEFVNPKDHDKPVQ-EVIAEMTGGGVDYSFECTGN-IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred HHHH----cCCceEEcccccchhHH-HHHHHHhCCCCCEEEECCCC-hHHHHHHHHHhhcCCCEEEEECc
Confidence 8866 465432322211 111 00111111468987654443 34778889999996 99987754
No 199
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.99 E-value=4.4e-09 Score=76.56 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=85.8
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC--CCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPD 176 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~ 176 (237)
.|+...++..|.-|||+|.|+|.++.+++++-.+...++++|.++++.....+.. +. .+++.+|+.+.. +.+
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~-~~ii~gda~~l~~~l~e 112 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PG-VNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CC-ccccccchhhHHHHHhh
Confidence 4677778899999999999999999999988666788999999999999888753 22 557788887632 333
Q ss_pred CCCCCCCEEEEeCC-------ChhchHHHHHhcccCCCEEEEEe
Q 026506 177 EFSGLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 177 ~~~~~~D~v~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..+..||.|++..| ...+.++++...|.+||.++.+.
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 33467999997665 22368999999999999987553
No 200
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.98 E-value=3.6e-09 Score=88.68 Aligned_cols=123 Identities=24% Similarity=0.312 Sum_probs=79.0
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC------
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ------ 172 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------ 172 (237)
.++++++..++ .+||+.||.|.+++.++... .+|+++|+++++++.|++|+..+++.+ +++..+++.+.
T Consensus 188 ~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~~ 262 (352)
T PF05958_consen 188 QALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKALAK 262 (352)
T ss_dssp HHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHHCC
T ss_pred HHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHHHh
Confidence 46677777766 89999999999999998764 789999999999999999999999987 99887765321
Q ss_pred --CCCC-----CCCCCCCEEEEeCCChh---chHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHhcCc
Q 026506 173 --GFPD-----EFSGLADSIFLDLPQPW---LAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRLNFT 231 (237)
Q Consensus 173 --~~~~-----~~~~~~D~v~~~~~~~~---~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~~f~ 231 (237)
.+.. .....+|+|++|+|... .+++.+. ++ .+++ |..|. .++.+-+..|.++|.
T Consensus 263 ~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~---~~-~~iv-YvSCnP~tlaRDl~~L~~~y~ 327 (352)
T PF05958_consen 263 AREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK---KL-KRIV-YVSCNPATLARDLKILKEGYK 327 (352)
T ss_dssp S-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH---HS-SEEE-EEES-HHHHHHHHHHHHCCEE
T ss_pred hHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh---cC-CeEE-EEECCHHHHHHHHHHHhhcCE
Confidence 0000 00136899999998553 2344332 23 3555 55565 667777777776654
No 201
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.98 E-value=6.5e-09 Score=87.33 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=85.9
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
+.+|||+.||+|..++.++....+..+|+++|+++++++.+++|++.++..+ +++...|+... +.. ....||+|++|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~-l~~-~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANV-LRY-RNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHH-HHH-hCCCCCEEEeC
Confidence 3589999999999999999875445789999999999999999999888765 88888888741 111 12569999999
Q ss_pred CCCh-hchHHHHHhcccCCCEEEEEeCCH
Q 026506 189 LPQP-WLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 189 ~~~~-~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
+... ..++..+.+.+++||.+++.++-.
T Consensus 122 PfGs~~~fld~al~~~~~~glL~vTaTD~ 150 (374)
T TIGR00308 122 PFGTPAPFVDSAIQASAERGLLLVTATDT 150 (374)
T ss_pred CCCCcHHHHHHHHHhcccCCEEEEEeccc
Confidence 8654 368999999999999999886543
No 202
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.98 E-value=1.2e-08 Score=81.91 Aligned_cols=114 Identities=23% Similarity=0.219 Sum_probs=80.1
Q ss_pred HHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (237)
Q Consensus 97 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 176 (237)
...+++.++..++++|||+|||+|.++..+++.. ..++++|+++.+++.+++++.. ..++++..+|+.+..++
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence 3447777788889999999999999999999874 4699999999999999987643 23489999999764332
Q ss_pred CCCCCCC---EEEEeCCChhchHHHHHhcc-cCCCEEEEEeCCHHHHHHH
Q 026506 177 EFSGLAD---SIFLDLPQPWLAIPSAKKML-KQDGILCSFSPCIEQVQRS 222 (237)
Q Consensus 177 ~~~~~~D---~v~~~~~~~~~~l~~~~~~L-~~gG~l~~~~~~~~~~~~~ 222 (237)
.+| .|+.|.|-.. .-..+.+.+ .++...+++.-..+..+++
T Consensus 91 ----~~d~~~~vvsNlPy~i-~~~il~~ll~~~~~~~~~~~~q~e~a~Rl 135 (253)
T TIGR00755 91 ----DFPKQLKVVSNLPYNI-SSPLIFKLLEKPKFRLAVLMVQKEVAERL 135 (253)
T ss_pred ----HcCCcceEEEcCChhh-HHHHHHHHhccCCCceEEEEehHHHHHHH
Confidence 355 8888887544 334444444 5555544444433433333
No 203
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=5.9e-08 Score=72.99 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=107.2
Q ss_pred CCCceEEeccCcEEEEECCCHHHHhhhcCCcccccccccHHHH---HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCc
Q 026506 58 PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFV---IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG 134 (237)
Q Consensus 58 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~ 134 (237)
-||+.+....+..|+.+.|..... .+.+ +..+.+++|.+||-+|+.+|+...+++.-.+ .+
T Consensus 38 VYGE~ii~~~~~eYR~Wnp~RSKL---------------aAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G 101 (231)
T COG1889 38 VYGERIIKVEGEEYREWNPRRSKL---------------AAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EG 101 (231)
T ss_pred ccCceeEEecCcceeeeCcchhHH---------------HHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CC
Confidence 467776666666666666643211 1112 3345688999999999999999999999986 68
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhc---hHHHHHhcccCCCEEEE
Q 026506 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCS 211 (237)
Q Consensus 135 ~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~---~l~~~~~~L~~gG~l~~ 211 (237)
.++++|.++......-..++.. .| +-.+.+|+....-....-+.+|+|+.|...+.+ +..++...||+||.+++
T Consensus 102 ~iYaVEfs~R~~reLl~~a~~R--~N-i~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 102 RIYAVEFSPRPMRELLDVAEKR--PN-IIPILEDARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred cEEEEEecchhHHHHHHHHHhC--CC-ceeeecccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 9999999998766655554432 24 778889987421112233579999999877654 57888999999997664
Q ss_pred Ee--CC-------HHHHHHHHHHHHh-cCcccc
Q 026506 212 FS--PC-------IEQVQRSCESLRL-NFTGKE 234 (237)
Q Consensus 212 ~~--~~-------~~~~~~~~~~l~~-~f~~v~ 234 (237)
.. -+ .+-.++..+.|++ +|.-++
T Consensus 179 ~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 179 AIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred EEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 42 11 2224556667777 676444
No 204
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.94 E-value=3e-08 Score=81.58 Aligned_cols=98 Identities=23% Similarity=0.309 Sum_probs=68.9
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEccccCCCCCCCCCCCCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV----SSFVTVGVRDIQGQGFPDEFSGLAD 183 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~~D 183 (237)
++.+|||+|||+|.++..++.. ..+|+++|+++.+++.++++....+. ...+++...|+.+ + . +.||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~--l-~---~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES--L-S---GKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh--c-C---CCcC
Confidence 5789999999999999888875 36899999999999999998875421 1236777888653 2 2 6799
Q ss_pred EEEE-----eCCChh--chHHHHHhcccCCCEEEEEeCC
Q 026506 184 SIFL-----DLPQPW--LAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 184 ~v~~-----~~~~~~--~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
+|++ +.+... ..++.+. .+.++|.++.+.+.
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs~~p~ 252 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIISFAPK 252 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEEeCCc
Confidence 9864 333321 2344444 45677776655553
No 205
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=9.9e-09 Score=78.20 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=89.2
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC----CC-CC
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD----EF-SG 180 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~-~~ 180 (237)
+.++..|+|+|+.+|+++..+++.+++...|+++|+.|- ....+ +.++++|+....... .. ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~-V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPG-VIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCC-ceEEeeeccCccHHHHHHHHcCCC
Confidence 578999999999999999999999877778999999662 12334 888999988632221 11 13
Q ss_pred CCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506 181 LADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES 235 (237)
Q Consensus 181 ~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~ 235 (237)
.+|+|++|+... ..+++-+...|+|||.+++-.-..+..+..+..++..|..|+.
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~ 181 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKI 181 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEE
Confidence 479999887532 1357778889999999987766667778888888888877654
No 206
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=98.91 E-value=2.7e-08 Score=83.32 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=66.7
Q ss_pred cCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (237)
Q Consensus 104 ~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 182 (237)
+..++|++||.+|+|+ |.++.++++++.+..+++++|.+++.++.+++ .+... ...+ +.+. .++
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~~----~~~~-----~~~~--~g~ 223 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADETY----LIDD-----IPED--LAV 223 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCcee----ehhh-----hhhc--cCC
Confidence 3467899999999998 66777777764334689999999999888865 23211 1111 1111 258
Q ss_pred CEEEEeCCC--hhchHHHHHhcccCCCEEEEEe
Q 026506 183 DSIFLDLPQ--PWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 183 D~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
|+||-..+. ....++.+.+.|++||++++++
T Consensus 224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred cEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 998765553 3357899999999999999876
No 207
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.91 E-value=9e-09 Score=83.40 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=67.6
Q ss_pred HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (237)
Q Consensus 98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 177 (237)
..+++.+++.++++|||+|||+|.++..++... .+++++|+++.+++.+++++.. .++++..+|+.+..++.
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~- 103 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE- 103 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH-
Confidence 346777888899999999999999999999883 4899999999999999887632 34999999998643332
Q ss_pred CCCCCCEEEEeCCCh
Q 026506 178 FSGLADSIFLDLPQP 192 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~ 192 (237)
..+|.|+.|+|-.
T Consensus 104 --~~~~~vv~NlPY~ 116 (272)
T PRK00274 104 --LQPLKVVANLPYN 116 (272)
T ss_pred --cCcceEEEeCCcc
Confidence 1158889998743
No 208
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.91 E-value=8.1e-09 Score=88.76 Aligned_cols=98 Identities=24% Similarity=0.329 Sum_probs=74.2
Q ss_pred CCEEEEEccCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 109 GCLVLESGTGSGSLTTSLARA---VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
+..|+|+|||+|.++...+++ .+...+|+++|-|+.+...+++.+..+++.++|+++.+|+.+...+ .++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence 578999999999998665543 3445799999999999988888878888888899999999875444 579999
Q ss_pred EEeCC-------ChhchHHHHHhcccCCCEEE
Q 026506 186 FLDLP-------QPWLAIPSAKKMLKQDGILC 210 (237)
Q Consensus 186 ~~~~~-------~~~~~l~~~~~~L~~gG~l~ 210 (237)
+...- ...+.|..+.+.|||+|+++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 97542 12357888899999999986
No 209
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=98.90 E-value=3.4e-08 Score=82.35 Aligned_cols=170 Identities=21% Similarity=0.154 Sum_probs=103.3
Q ss_pred CCCCCCCEEEEEEc-CCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc---
Q 026506 14 RCIKEGDLVIVYER-HDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR--- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 88 (237)
..+++||||.+... .+ |+.|..|+.|..+.|..... .|. ...|++. |...|.... ..++..
T Consensus 76 ~~~~~Gd~V~~~~~~~~--------c~~c~~c~~g~~~~c~~~~~-~g~---~~~G~~aey~~v~~~~~--~~lP~~~~~ 141 (329)
T TIGR02822 76 GGFAVGDRVGIAWLRRT--------CGVCRYCRRGAENLCPASRY-TGW---DTDGGYAEYTTVPAAFA--YRLPTGYDD 141 (329)
T ss_pred cccCCCCEEEEcCccCc--------CCCChHHhCcCcccCCCccc-CCc---ccCCcceeEEEeccccE--EECCCCCCH
Confidence 46899999988542 23 78888898888777764221 221 1123333 333332211 111111
Q ss_pred ---ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 89 ---TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 89 ---~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
..+..+...+ ..+...++++|++||..|+|+ |..+.++++..+ .++++++.+++.++.+++ .|.+..++
T Consensus 142 ~~aa~l~~~~~ta~~~~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~----~Ga~~vi~ 215 (329)
T TIGR02822 142 VELAPLLCAGIIGYRALLRASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA----LGAASAGG 215 (329)
T ss_pred HHhHHHhccchHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH----hCCceecc
Confidence 1111111111 133456788999999999887 667777777753 479999999999888877 56543222
Q ss_pred EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
. .+ ... +.+|+++...... ..+..+.+.|++||++++++.
T Consensus 216 ~-----~~--~~~---~~~d~~i~~~~~~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 216 A-----YD--TPP---EPLDAAILFAPAG-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred c-----cc--cCc---ccceEEEECCCcH-HHHHHHHHhhCCCcEEEEEec
Confidence 1 11 111 4588766543333 478999999999999998774
No 210
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.8e-08 Score=82.43 Aligned_cols=128 Identities=21% Similarity=0.260 Sum_probs=91.5
Q ss_pred CcccccccccHHHHH--HhcCCCCCCEEEEEccCccHHHHHHHHHhCCC---cEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506 87 HRTQILYIADISFVI--MYLELVPGCLVLESGTGSGSLTTSLARAVAPT---GHVYTFDFHEQRAASAREDFERTGVSSF 161 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~--~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 161 (237)
.....++..++..++ ..++++|+++|||+++.+|+-++++.+.+... +.+++-|.++.++...++........+
T Consensus 132 ~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~- 210 (375)
T KOG2198|consen 132 TGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN- 210 (375)
T ss_pred cccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc-
Confidence 345556666655544 56789999999999999999999998887532 479999999999999988876554333
Q ss_pred EEEEEccccC---C---CCCCCCCCCCCEEEEeCCCh----------------------------hchHHHHHhcccCCC
Q 026506 162 VTVGVRDIQG---Q---GFPDEFSGLADSIFLDLPQP----------------------------WLAIPSAKKMLKQDG 207 (237)
Q Consensus 162 i~~~~~d~~~---~---~~~~~~~~~~D~v~~~~~~~----------------------------~~~l~~~~~~L~~gG 207 (237)
+.+...|+.. . ...+.....||.|++|.|+. ..++.+..++||+||
T Consensus 211 ~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG 290 (375)
T KOG2198|consen 211 LLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG 290 (375)
T ss_pred eeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCC
Confidence 4444433322 1 01111124799999988743 146888999999999
Q ss_pred EEEEEeCCH
Q 026506 208 ILCSFSPCI 216 (237)
Q Consensus 208 ~l~~~~~~~ 216 (237)
+++ |++|.
T Consensus 291 ~lV-YSTCS 298 (375)
T KOG2198|consen 291 RLV-YSTCS 298 (375)
T ss_pred EEE-EeccC
Confidence 998 88885
No 211
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=98.88 E-value=3.4e-08 Score=83.51 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=104.5
Q ss_pred CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeecccccc-CCCCc-------------eE--EeccCcEE-EEEC
Q 026506 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIG-KPFGS-------------MV--FSNKGGFV-YLLA 75 (237)
Q Consensus 13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~g~-------------~~--~~~~~~~~-~~~~ 75 (237)
...+++||||+.....+ |+.|.+|..|..+.|.... ...|. .. ....|++. |...
T Consensus 74 v~~~~~GdrV~~~~~~~--------c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v 145 (365)
T cd08277 74 VTNLKPGDKVIPLFIGQ--------CGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVV 145 (365)
T ss_pred CccCCCCCEEEECCCCC--------CCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEE
Confidence 34689999998866555 8889999888777765211 00000 00 00123333 3333
Q ss_pred CCHHHHhhhcCC-----cccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026506 76 PTPELWTLVLSH-----RTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRA 146 (237)
Q Consensus 76 ~~~~~~~~~~~~-----~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~ 146 (237)
+... ...++. ....+. +...+. +.....++++++||.+|+|+ |..+.++++..+ ..+|++++.+++..
T Consensus 146 ~~~~--~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~ 222 (365)
T cd08277 146 DENY--VAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKF 222 (365)
T ss_pred chhh--eEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHH
Confidence 3211 111111 111111 111111 23445678999999999987 777788888763 34799999999998
Q ss_pred HHHHHHHHHcCCCCcEEEEEcc--ccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCC-CEEEEEeC
Q 026506 147 ASAREDFERTGVSSFVTVGVRD--IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (237)
Q Consensus 147 ~~a~~~~~~~~~~~~i~~~~~d--~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~ 214 (237)
+.+++ .|.+..+.....+ +.+ .+.....+++|+|+...... ..+..+.+.|+++ |+++.++.
T Consensus 223 ~~~~~----~ga~~~i~~~~~~~~~~~-~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 223 EKAKE----FGATDFINPKDSDKPVSE-VIREMTGGGVDYSFECTGNA-DLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred HHHHH----cCCCcEeccccccchHHH-HHHHHhCCCCCEEEECCCCh-HHHHHHHHhcccCCCEEEEEcC
Confidence 88865 4654322222111 110 01111114699977655433 4788899999885 99987764
No 212
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.88 E-value=3.3e-08 Score=78.79 Aligned_cols=100 Identities=25% Similarity=0.286 Sum_probs=78.1
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
+....+..+..+|+|+|+|.|.++..+++.. |..+++..|. |+.++.+++ .+++++..+|+. ..+|
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P---- 157 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLP---- 157 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCS----
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhc----
Confidence 4555667777899999999999999999886 6789999998 888888877 356999999998 5565
Q ss_pred CCCCEEEEeC-----CCh--hchHHHHHhcccCC--CEEEEEeC
Q 026506 180 GLADSIFLDL-----PQP--WLAIPSAKKMLKQD--GILCSFSP 214 (237)
Q Consensus 180 ~~~D~v~~~~-----~~~--~~~l~~~~~~L~~g--G~l~~~~~ 214 (237)
. +|++++.. ++. ..+|+++.+.|+|| |+|+++..
T Consensus 158 ~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 158 V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 4 99998632 222 25899999999999 99997753
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.87 E-value=8.5e-09 Score=85.27 Aligned_cols=127 Identities=18% Similarity=0.153 Sum_probs=86.3
Q ss_pred ccccccccHHH-HHHhcCCCCCCEEEEEccCccHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506 89 TQILYIADISF-VIMYLELVPGCLVLESGTGSGSLTTSLARAV------APTGHVYTFDFHEQRAASAREDFERTGVSSF 161 (237)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 161 (237)
.+...|..+.. ++..+...++.+|+|.+||+|.+...+...+ ....+++|+|+++.....|+-++...+....
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 45556666654 6777888888999999999999998887753 2457899999999999999988776664332
Q ss_pred -EEEEEccccCCCCCCCCCCCCCEEEEeCCCh--------------------------hchHHHHHhcccCCCEEEEEeC
Q 026506 162 -VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 162 -i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~--------------------------~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
..+..+|........ ....||+|+.++|-- +.+++.+.+.|++||+++++.|
T Consensus 106 ~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 106 NINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp GCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccc-cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 457788876422211 126799999987611 1368889999999999988887
Q ss_pred CH
Q 026506 215 CI 216 (237)
Q Consensus 215 ~~ 216 (237)
..
T Consensus 185 ~~ 186 (311)
T PF02384_consen 185 NG 186 (311)
T ss_dssp HH
T ss_pred ch
Confidence 53
No 214
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.84 E-value=3.3e-08 Score=79.81 Aligned_cols=98 Identities=26% Similarity=0.266 Sum_probs=78.4
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
...+..|||+|||+|.++...+.. +..+|+++|- .+|.+.|++.++.+.+.++|.++.+.+.+..+| ++.|++
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~Dvi 247 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVI 247 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHh--CcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCc----hhccEE
Confidence 346789999999999999777665 5689999996 578999999998888888899999988875566 579999
Q ss_pred EEeCCChh-------chHHHHHhcccCCCEEE
Q 026506 186 FLDLPQPW-------LAIPSAKKMLKQDGILC 210 (237)
Q Consensus 186 ~~~~~~~~-------~~l~~~~~~L~~gG~l~ 210 (237)
+..+-..- +..-.+.+.|+|.|.++
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 87664332 23334679999999886
No 215
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.84 E-value=2.5e-08 Score=83.77 Aligned_cols=175 Identities=18% Similarity=0.148 Sum_probs=101.5
Q ss_pred CCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC------c--
Q 026506 18 EGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH------R-- 88 (237)
Q Consensus 18 ~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~-- 88 (237)
+||||.+....+ ||.|..|+.|..+.|..... .|.. ..|++. |...|....+ .++. .
T Consensus 76 ~GdrV~~~~~~~--------cg~c~~c~~g~~~~c~~~~~-~g~~---~~G~~ae~~~v~~~~~~--~ip~~~~~~~~~~ 141 (349)
T TIGR03201 76 IGKAVIVPAVIP--------CGECELCKTGRGTICRAQKM-PGND---MQGGFASHIVVPAKGLC--VVDEARLAAAGLP 141 (349)
T ss_pred CCCEEEECCCCC--------CCCChhhhCcCcccCCCCCc-cCcC---CCCcccceEEechHHeE--ECCcccccccCCC
Confidence 999999987666 88889998888777753211 1211 124443 3333322111 1111 0
Q ss_pred ---cc-ccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 026506 89 ---TQ-ILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (237)
Q Consensus 89 ---~~-~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i 162 (237)
.. +..+...+ ..+....++++++|+.+|+|+ |..+.++++..+ .++++++.+++.++.+++ .|.+..+
T Consensus 142 ~~~~a~~~~~~~ta~~a~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~~~i 215 (349)
T TIGR03201 142 LEHVSVVADAVTTPYQAAVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGADLTL 215 (349)
T ss_pred HHHhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCceEe
Confidence 00 01111111 123345678899999999988 788888888863 479999999999988866 3543323
Q ss_pred EEEEc---cccCCCCCC-CCCCCCC----EEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 163 TVGVR---DIQGQGFPD-EFSGLAD----SIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 163 ~~~~~---d~~~~~~~~-~~~~~~D----~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+.... ++.+ .... ..+.++| +|+... .....++.+.+.|++||++++++.
T Consensus 216 ~~~~~~~~~~~~-~~~~~t~~~g~d~~~d~v~d~~-g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 216 NPKDKSAREVKK-LIKAFAKARGLRSTGWKIFECS-GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred cCccccHHHHHH-HHHhhcccCCCCCCcCEEEECC-CChHHHHHHHHHHhcCCeEEEECc
Confidence 22221 1111 0110 0113455 555444 434478889999999999998763
No 216
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.84 E-value=1.2e-09 Score=83.55 Aligned_cols=114 Identities=21% Similarity=0.126 Sum_probs=79.9
Q ss_pred cccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 026506 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI 169 (237)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~ 169 (237)
..-.|...+.++..++..+-.++||+|||||..+..+.... .++.++|+|++|++.|.++ +.-+ ...+.|.
T Consensus 107 ~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea 177 (287)
T COG4976 107 GYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEA 177 (287)
T ss_pred cCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHH
Confidence 33445666667777777778899999999999998888774 6799999999999999885 3222 1223333
Q ss_pred cCCCCCCCCCCCCCEEEE-e----CCChhchHHHHHhcccCCCEEEEEe
Q 026506 170 QGQGFPDEFSGLADSIFL-D----LPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 170 ~~~~~~~~~~~~~D~v~~-~----~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.. -.+.....+||+|.. | ...-..++..+...|+|||.+.+.+
T Consensus 178 ~~-Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 178 VL-FLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred HH-HhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 21 011122368999864 2 2333457888899999999998665
No 217
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.84 E-value=1.3e-08 Score=79.43 Aligned_cols=104 Identities=25% Similarity=0.181 Sum_probs=73.6
Q ss_pred HhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-c-----C-----CCCcEEEEEcccc
Q 026506 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-T-----G-----VSSFVTVGVRDIQ 170 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~-----~-----~~~~i~~~~~d~~ 170 (237)
..+...++.+||+.|||.|.....++.+ +.+|+++|+++.+++.+.+.... . + -..+|++.++|++
T Consensus 31 ~~l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF 107 (218)
T PF05724_consen 31 DSLALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFF 107 (218)
T ss_dssp HHHTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TT
T ss_pred HhcCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccc
Confidence 3355678889999999999999999886 37999999999999988442111 0 0 0124789999998
Q ss_pred CCCCCCCCCCCCCEEEEe-------CCChhchHHHHHhcccCCCEEE
Q 026506 171 GQGFPDEFSGLADSIFLD-------LPQPWLAIPSAKKMLKQDGILC 210 (237)
Q Consensus 171 ~~~~~~~~~~~~D~v~~~-------~~~~~~~l~~~~~~L~~gG~l~ 210 (237)
+ ++....++||+|+-. +....+..+.+.++|+|||.++
T Consensus 108 ~--l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 108 E--LPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp T--GGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred c--CChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 7 322222579998742 2233468999999999999943
No 218
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.83 E-value=1.4e-08 Score=76.69 Aligned_cols=120 Identities=23% Similarity=0.199 Sum_probs=72.3
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccCCCCCC-CCCCCC
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPD-EFSGLA 182 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~-~~~~~~ 182 (237)
...+.+|||+|||+|..++.++... +..+|+..|.++ .++.++.|++.++ ....+.+...|+.+..... .....|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 4678899999999999988888774 457999999988 9999999999876 4455788887775411000 112579
Q ss_pred CEEEE-eC----CChhchHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHH
Q 026506 183 DSIFL-DL----PQPWLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLR 227 (237)
Q Consensus 183 D~v~~-~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~ 227 (237)
|+|+. |. .....++..+.++|+++|.+++..+.. ....++.+.++
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~ 171 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLK 171 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH-
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhh
Confidence 99875 22 233357778888999999855444322 33455555554
No 219
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=98.81 E-value=8.6e-08 Score=80.90 Aligned_cols=177 Identities=19% Similarity=0.207 Sum_probs=99.8
Q ss_pred CCCCCCCCEEEEEEc-CCcEEEEEEcCCCeeeeccceeeccccccCCC------CceEEeccCcEE-EEECCCHHHHhhh
Q 026506 13 TRCIKEGDLVIVYER-HDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPF------GSMVFSNKGGFV-YLLAPTPELWTLV 84 (237)
Q Consensus 13 ~~~~~~Gd~V~i~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------g~~~~~~~~~~~-~~~~~~~~~~~~~ 84 (237)
...|++||||++... .+ ||.|.+|+.|..+.|+...... |. ...|++. |...|.... ..
T Consensus 85 v~~~~vGdrV~~~~~~~~--------Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~---~~~G~~aey~~v~~~~~--~~ 151 (360)
T PLN02586 85 VKKFKEGDRVGVGVIVGS--------CKSCESCDQDLENYCPKMIFTYNSIGHDGT---KNYGGYSDMIVVDQHFV--LR 151 (360)
T ss_pred CCccCCCCEEEEccccCc--------CCCCccccCCCcccCCCccccccccccCCC---cCCCccceEEEEchHHe--ee
Confidence 346899999986542 34 8999999999888886321100 11 1134444 444443221 11
Q ss_pred cCCc-----ccccccccH-HH-HHHh-cCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH-HHHHHHH
Q 026506 85 LSHR-----TQILYIADI-SF-VIMY-LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA-SAREDFE 154 (237)
Q Consensus 85 ~~~~-----~~~~~~~~~-~~-~~~~-~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~-~a~~~~~ 154 (237)
++.. +..+..... .. .+.. ....++++||..|+|+ |..+.++++..+ .++++++.+++... .+++
T Consensus 152 lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~~--- 226 (360)
T PLN02586 152 FPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAINR--- 226 (360)
T ss_pred CCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHHh---
Confidence 1211 111111111 11 2222 2356899999999988 888888888863 46888877765433 3333
Q ss_pred HcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 155 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.|.+..++....+ .+.... +.+|+|+.....+ ..++.+.+.|++||+++.++.
T Consensus 227 -~Ga~~vi~~~~~~----~~~~~~-~~~D~vid~~g~~-~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 227 -LGADSFLVSTDPE----KMKAAI-GTMDYIIDTVSAV-HALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -CCCcEEEcCCCHH----HHHhhc-CCCCEEEECCCCH-HHHHHHHHHhcCCcEEEEeCC
Confidence 4643312111111 111111 3589987555433 378889999999999997753
No 220
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.81 E-value=1.3e-08 Score=78.55 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=67.7
Q ss_pred HhcCCCCCC-EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 102 MYLELVPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 102 ~~~~~~~~~-~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
......++. .++|+|||+|.-+..++.+. .+|+++|+++.+++.|++.....-..........+..+ +.. ..+
T Consensus 26 ~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~--L~g-~e~ 99 (261)
T KOG3010|consen 26 KIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD--LLG-GEE 99 (261)
T ss_pred HHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCcccccccccc--ccC-CCc
Confidence 334445555 88999999997777777774 78999999999999998853211111111222222221 221 127
Q ss_pred CCCEEEEeCC----ChhchHHHHHhcccCCC-EEEEEe
Q 026506 181 LADSIFLDLP----QPWLAIPSAKKMLKQDG-ILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~----~~~~~l~~~~~~L~~gG-~l~~~~ 213 (237)
++|+|++.-. +...+.+.+.+.||+.| .+.++.
T Consensus 100 SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 100 SVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred ceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEE
Confidence 8999876443 33468899999998766 666654
No 221
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.81 E-value=2.5e-07 Score=71.29 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=61.7
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-C-CCCCCCCCCCCE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-Q-GFPDEFSGLADS 184 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~~~~D~ 184 (237)
.++.+|||+|||+|.++..++... ...++++|+++++++.++++ + +++...|+.+ . .++. +.||+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~~~~---~sfD~ 78 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEAFPD---KSFDY 78 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhcccccCC---CCcCE
Confidence 467899999999999998887653 35789999999999888652 2 5667777753 1 2333 67999
Q ss_pred EEEe-----CCChhchHHHHHhccc
Q 026506 185 IFLD-----LPQPWLAIPSAKKMLK 204 (237)
Q Consensus 185 v~~~-----~~~~~~~l~~~~~~L~ 204 (237)
|+++ .+++..+++++.+.++
T Consensus 79 Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 79 VILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred EEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 9864 3456667777766554
No 222
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=5.1e-08 Score=75.30 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=43.0
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 154 (237)
...+..+|||||-+|.+++++++.+++ ..+.++|+++..++.|++++.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcc
Confidence 455779999999999999999999865 789999999999999999864
No 223
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.77 E-value=2e-07 Score=84.92 Aligned_cols=126 Identities=21% Similarity=0.177 Sum_probs=90.4
Q ss_pred ccccccHHHHHHhcCC-CCCCEEEEEccCccHHHHHHHHHhC--------------------------------------
Q 026506 91 ILYIADISFVIMYLEL-VPGCLVLESGTGSGSLTTSLARAVA-------------------------------------- 131 (237)
Q Consensus 91 ~~~~~~~~~~~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~-------------------------------------- 131 (237)
.+.+..++.++...+. .++..++|.+||+|++.+..+....
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 3444445556677776 6789999999999999987765310
Q ss_pred ---CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh------h---ch---H
Q 026506 132 ---PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP------W---LA---I 196 (237)
Q Consensus 132 ---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~------~---~~---l 196 (237)
...+++++|+++.+++.|++|+...|+.+.+++..+|+.+...+. ..+.+|+|+.|+|-- . ++ +
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~l 330 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALYSQL 330 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHHHHH
Confidence 113699999999999999999999999877999999997633221 114699999998721 1 12 2
Q ss_pred HHHHhcccCCCEEEEEeCCHH
Q 026506 197 PSAKKMLKQDGILCSFSPCIE 217 (237)
Q Consensus 197 ~~~~~~L~~gG~l~~~~~~~~ 217 (237)
....+...+|+.++++++...
T Consensus 331 g~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 331 GRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHhCCCCeEEEEeCCHH
Confidence 233444459999998888654
No 224
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=7.3e-08 Score=76.37 Aligned_cols=87 Identities=25% Similarity=0.315 Sum_probs=72.2
Q ss_pred HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (237)
Q Consensus 98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 177 (237)
..++..+++.+++.|||||+|.|.+|..+++.. .+|+++|+++.+++..++.+. ...+++++.+|+....++..
T Consensus 20 ~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 20 DKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh
Confidence 347888889999999999999999999999984 679999999999999998764 22349999999998666632
Q ss_pred CCCCCCEEEEeCCCh
Q 026506 178 FSGLADSIFLDLPQP 192 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~ 192 (237)
..++.|+.|.|-.
T Consensus 94 --~~~~~vVaNlPY~ 106 (259)
T COG0030 94 --AQPYKVVANLPYN 106 (259)
T ss_pred --cCCCEEEEcCCCc
Confidence 1689999998844
No 225
>PRK10083 putative oxidoreductase; Provisional
Probab=98.77 E-value=1.8e-07 Score=78.18 Aligned_cols=180 Identities=14% Similarity=0.139 Sum_probs=103.2
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 88 (237)
..+++||+|.+.+..+ |+.|.+|..|..+.|.-.+ .......|.+. |...+....+ .++..
T Consensus 73 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~--~ip~~~~~~ 138 (339)
T PRK10083 73 DAARIGERVAVDPVIS--------CGHCYPCSIGKPNVCTSLV----VLGVHRDGGFSEYAVVPAKNAH--RIPDAIADQ 138 (339)
T ss_pred ccCCCCCEEEEccccC--------CCCCccccCcCcccCCCCc----eEEEccCCcceeeEEechHHeE--ECcCCCCHH
Confidence 4689999999987666 7888888888777775221 11111123333 3333322111 11111
Q ss_pred -ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506 89 -TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (237)
Q Consensus 89 -~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~ 165 (237)
.....+.... .+....++.++++|+..|+|. |..+.++++...+...+++++.+++..+.+++ .|++..+...
T Consensus 139 ~a~~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~ 214 (339)
T PRK10083 139 YAVMVEPFTIAANVTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE----SGADWVINNA 214 (339)
T ss_pred HHhhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH----hCCcEEecCc
Confidence 1111111111 133455688999999999877 66677777753233568889999998888876 4554322322
Q ss_pred EccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 166 VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 166 ~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
..++. ..+... +..+|+++...... ..+..+.+.|+++|+++.++.
T Consensus 215 ~~~~~-~~~~~~-g~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 215 QEPLG-EALEEK-GIKPTLIIDAACHP-SILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred cccHH-HHHhcC-CCCCCEEEECCCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence 22222 111111 12356766544433 378889999999999998753
No 226
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=98.76 E-value=1.1e-07 Score=81.05 Aligned_cols=187 Identities=18% Similarity=0.225 Sum_probs=106.3
Q ss_pred CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC------CCce----------EEeccCcEE-EEEC
Q 026506 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP------FGSM----------VFSNKGGFV-YLLA 75 (237)
Q Consensus 13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~g~~----------~~~~~~~~~-~~~~ 75 (237)
...+++||+|......+ ||.|.+|+.|..+.|+..... +|.. .....|.+. +...
T Consensus 73 v~~~~~Gd~V~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 144 (386)
T cd08283 73 VRNLKVGDRVVVPFTIA--------CGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRV 144 (386)
T ss_pred CCCCCCCCEEEEcCcCC--------CCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEc
Confidence 44689999999987666 888999988877776532110 0000 000123333 2232
Q ss_pred CCHHHHhhhcCCc-----cc-ccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 026506 76 PTPELWTLVLSHR-----TQ-ILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA 147 (237)
Q Consensus 76 ~~~~~~~~~~~~~-----~~-~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~ 147 (237)
+........++.. +. +......+ ..+....+.++.+||+.|+|+ |..+..+++..+ ..++++++.++++.+
T Consensus 145 ~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~ 223 (386)
T cd08283 145 PFADVGPFKIPDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLE 223 (386)
T ss_pred ccccCeEEECCCCCCHHHHhhhccchhhhHHHHhhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHH
Confidence 2211011111111 01 11111111 123456678899999999988 888888888863 346999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEcc-ccC--CCCCCCCCCCCCEEEEeCC--------------------ChhchHHHHHhccc
Q 026506 148 SAREDFERTGVSSFVTVGVRD-IQG--QGFPDEFSGLADSIFLDLP--------------------QPWLAIPSAKKMLK 204 (237)
Q Consensus 148 ~a~~~~~~~~~~~~i~~~~~d-~~~--~~~~~~~~~~~D~v~~~~~--------------------~~~~~l~~~~~~L~ 204 (237)
.+++.. +. ..+.....+ +.+ ..+.. +..+|+|+.... ++...+..+.+.|+
T Consensus 224 ~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~--~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 297 (386)
T cd08283 224 MARSHL---GA-ETINFEEVDDVVEALRELTG--GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVR 297 (386)
T ss_pred HHHHcC---Cc-EEEcCCcchHHHHHHHHHcC--CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhc
Confidence 888742 22 112222221 211 01111 136999776442 12347888999999
Q ss_pred CCCEEEEEeC
Q 026506 205 QDGILCSFSP 214 (237)
Q Consensus 205 ~gG~l~~~~~ 214 (237)
++|+++.++.
T Consensus 298 ~~G~iv~~g~ 307 (386)
T cd08283 298 KGGTVSIIGV 307 (386)
T ss_pred cCCEEEEEcC
Confidence 9999998753
No 227
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.76 E-value=1.3e-07 Score=71.70 Aligned_cols=98 Identities=23% Similarity=0.190 Sum_probs=79.8
Q ss_pred EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (237)
Q Consensus 111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 190 (237)
+++|+|+|.|.-++.++-.. |..+++.+|.+...+.+.+......+++| +++....+.+ .... ..||+|+.-+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~-~~~~---~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE-PEYR---ESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH-TTTT---T-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc-cccC---CCccEEEeehh
Confidence 89999999999888888775 67899999999999999999999999987 9999998875 2222 78999998765
Q ss_pred Ch-hchHHHHHhcccCCCEEEEEeC
Q 026506 191 QP-WLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 191 ~~-~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.+ ..+++-+.+.+++||+++++-.
T Consensus 125 ~~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 125 APLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 43 4578888999999999998864
No 228
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=98.75 E-value=8e-08 Score=80.71 Aligned_cols=183 Identities=20% Similarity=0.240 Sum_probs=104.0
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhh--hcC-Ccc
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTL--VLS-HRT 89 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~--~~~-~~~ 89 (237)
..+++||+|......+ |+.|.+|+.|....|...+. .|. ....|.+. |...+....+.. .++ ...
T Consensus 84 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~--~~~~g~~a~~~~~~~~~~~~lP~~~~~~~a 152 (351)
T cd08233 84 TGFKVGDRVVVEPTIK--------CGTCGACKRGLYNLCDSLGF-IGL--GGGGGGFAEYVVVPAYHVHKLPDNVPLEEA 152 (351)
T ss_pred CCCCCCCEEEECCCCC--------CCCChHHhCcCcccCCCCce-ecc--CCCCCceeeEEEechHHeEECcCCCCHHHh
Confidence 4689999999977556 88888888887666653221 010 00023333 333332111100 001 011
Q ss_pred cccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506 90 QILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (237)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~ 167 (237)
..+.+...+. .+......++++||..|+|. |..+.++++..+ ..++++++.+++..+.+++ .|.+..+.....
T Consensus 153 a~~~~~~ta~~~l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~ 227 (351)
T cd08233 153 ALVEPLAVAWHAVRRSGFKPGDTALVLGAGPIGLLTILALKAAG-ASKIIVSEPSEARRELAEE----LGATIVLDPTEV 227 (351)
T ss_pred hhccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEECCCcc
Confidence 1111211121 33556778899999999876 777778888763 2378999999998888765 354332222222
Q ss_pred cccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 168 DIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 168 d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++.+ .+.. ..+.++|+++...... ..++.+.+.|+++|+++.++.
T Consensus 228 ~~~~-~l~~~~~~~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 228 DVVA-EVRKLTGGGGVDVSFDCAGVQ-ATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CHHH-HHHHHhCCCCCCEEEECCCCH-HHHHHHHHhccCCCEEEEEcc
Confidence 2221 1111 1113599977655433 378889999999999987754
No 229
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.73 E-value=1.2e-07 Score=79.56 Aligned_cols=183 Identities=20% Similarity=0.186 Sum_probs=103.9
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccc--cCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc--
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWI--GKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR-- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 88 (237)
..+++||+|...+..+ |+.|..|..|..+.|... +...+. ...|.+. |...|....+...++..
T Consensus 73 ~~~~~Gd~V~~~~~~~--------~~~c~~c~~g~~~~~~~~~~~~~~~~---~~~g~~~~y~~v~~~~~~~~~lP~~~~ 141 (351)
T cd08285 73 KDFKPGDRVIVPAITP--------DWRSVAAQRGYPSQSGGMLGGWKFSN---FKDGVFAEYFHVNDADANLAPLPDGLT 141 (351)
T ss_pred CccCCCCEEEEcCcCC--------CCCCHHHHCcCcccCcCCCCCccccC---CCCcceeEEEEcchhhCceEECCCCCC
Confidence 4589999999876555 888888888877666521 111110 1123333 33333211111111111
Q ss_pred ---cccc-ccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 026506 89 ---TQIL-YIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (237)
Q Consensus 89 ---~~~~-~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i 162 (237)
...+ .+...+ ..+.....+++++||..|+|+ |..+.++++..+ ...+++++.+++..+.+++ .|.+..+
T Consensus 142 ~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v 216 (351)
T cd08285 142 DEQAVMLPDMMSTGFHGAELANIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIV 216 (351)
T ss_pred HHHhhhhccchhhHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEe
Confidence 1111 111111 123455678899999999887 777788888763 3479999999988888776 4543322
Q ss_pred EEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 163 TVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 163 ~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+....+..+.......+.++|+++...... ..+..+.+.|+++|+++.++
T Consensus 217 ~~~~~~~~~~i~~~~~~~~~d~vld~~g~~-~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 217 DYKNGDVVEQILKLTGGKGVDAVIIAGGGQ-DTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred cCCCCCHHHHHHHHhCCCCCcEEEECCCCH-HHHHHHHHHhhcCCEEEEec
Confidence 222222211000001114699977655433 47889999999999998765
No 230
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.73 E-value=4.5e-07 Score=73.85 Aligned_cols=88 Identities=18% Similarity=0.239 Sum_probs=69.2
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD 176 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~ 176 (237)
.+++.+.+.++..++|.-+|.|+.+..++..++. ++|+++|.++.+++.+++++..+ .+++.++++++.+. .+..
T Consensus 11 Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 11 EVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHh
Confidence 3677788889999999999999999999998754 89999999999999999988654 35689999888751 1111
Q ss_pred CCCCCCCEEEEeC
Q 026506 177 EFSGLADSIFLDL 189 (237)
Q Consensus 177 ~~~~~~D~v~~~~ 189 (237)
.....+|.|+.|.
T Consensus 88 ~~~~~vDgIl~DL 100 (305)
T TIGR00006 88 LLVTKIDGILVDL 100 (305)
T ss_pred cCCCcccEEEEec
Confidence 1114689998764
No 231
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.72 E-value=1.1e-08 Score=77.82 Aligned_cols=124 Identities=18% Similarity=0.194 Sum_probs=75.2
Q ss_pred HHHhcC-CCC--CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC----
Q 026506 100 VIMYLE-LVP--GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---- 172 (237)
Q Consensus 100 ~~~~~~-~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~---- 172 (237)
+.+..+ +.+ +.++||+||+||+++..++.+.++..+|+++|+.+. ....+ +....+|+.+.
T Consensus 12 i~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~~~~~~~~ 79 (181)
T PF01728_consen 12 IDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDITNPENIK 79 (181)
T ss_dssp HHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGGEEEEHSH
T ss_pred HHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeecccchhhHHH
Confidence 344444 344 489999999999999998888645689999999765 11112 44445554330
Q ss_pred CCCCC---CCCCCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccc
Q 026506 173 GFPDE---FSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGK 233 (237)
Q Consensus 173 ~~~~~---~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v 233 (237)
.+... ....+|+|++|.... ...+.-+.+.|+|||.+++-.-......+++..++..|..+
T Consensus 80 ~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v 159 (181)
T PF01728_consen 80 DIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKV 159 (181)
T ss_dssp HGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHE
T ss_pred hhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEE
Confidence 01111 125799999987211 12455667889999987755433333347777777777766
Q ss_pred cc
Q 026506 234 ES 235 (237)
Q Consensus 234 ~~ 235 (237)
++
T Consensus 160 ~~ 161 (181)
T PF01728_consen 160 KI 161 (181)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 232
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.72 E-value=1.1e-07 Score=76.50 Aligned_cols=183 Identities=22% Similarity=0.193 Sum_probs=102.8
Q ss_pred ccCCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccc--cc---cC-CCCceEEeccCcEE-EEECCCHHHHhh
Q 026506 11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSD--WI---GK-PFGSMVFSNKGGFV-YLLAPTPELWTL 83 (237)
Q Consensus 11 ~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~---~~-~~g~~~~~~~~~~~-~~~~~~~~~~~~ 83 (237)
+-...||.||||-|-...+ .|.+|-.|..|.=+.|. .+ +. ..|. ..+|+|. |....... ..
T Consensus 82 s~V~~~kiGD~vGVg~~~~-------sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt---~~~ggf~~~~~v~~~~--a~ 149 (360)
T KOG0023|consen 82 SNVTGFKIGDRVGVGWLNG-------SCLSCEYCKSGNENYCPKMHFTYNGVYHDGT---ITQGGFQEYAVVDEVF--AI 149 (360)
T ss_pred CCcccccccCeeeeeEEec-------cccCccccccCCcccCCceeEeccccccCCC---CccCccceeEEEeeee--EE
Confidence 4478899999999965433 36666666666555554 11 11 1111 1234444 22221111 11
Q ss_pred hcCC-----cccccccccHH--HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026506 84 VLSH-----RTQILYIADIS--FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155 (237)
Q Consensus 84 ~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 155 (237)
..+. .++.+.-..+. ..+.+.+..||.++-..|.|. |.++..++.++ ..+|+++|.+...-+.+-+ .
T Consensus 150 kIP~~~pl~~aAPlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~~---~ 224 (360)
T KOG0023|consen 150 KIPENLPLASAAPLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAIK---S 224 (360)
T ss_pred ECCCCCChhhccchhhcceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHHH---h
Confidence 1111 11111100000 145677788999999999988 99999999998 3789999998755554433 3
Q ss_pred cCCCCcEEEE-EccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 156 TGVSSFVTVG-VRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 156 ~~~~~~i~~~-~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+|.+.-+... ..|..+ .+...+.+..|.+. +. ....++.+.++||++|++++++.
T Consensus 225 LGAd~fv~~~~d~d~~~-~~~~~~dg~~~~v~-~~--a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 225 LGADVFVDSTEDPDIMK-AIMKTTDGGIDTVS-NL--AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred cCcceeEEecCCHHHHH-HHHHhhcCcceeee-ec--cccchHHHHHHhhcCCEEEEEeC
Confidence 6766534433 333332 12211224455533 22 22368889999999999997753
No 233
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2.1e-08 Score=71.29 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=63.5
Q ss_pred CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
+--.|..++|+|||.|.+..+.+.. ....+.++|++|++++.+.+|++...+. +++.+.|+.+..+.. +.||.
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~---g~fDt 117 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKG---GIFDT 117 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccC---CeEee
Confidence 4456899999999999999554433 4578999999999999999999877653 688888887644433 78999
Q ss_pred EEEeCC
Q 026506 185 IFLDLP 190 (237)
Q Consensus 185 v~~~~~ 190 (237)
++.|+|
T Consensus 118 aviNpp 123 (185)
T KOG3420|consen 118 AVINPP 123 (185)
T ss_pred EEecCC
Confidence 999987
No 234
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=98.68 E-value=2.6e-07 Score=78.39 Aligned_cols=177 Identities=20% Similarity=0.204 Sum_probs=100.7
Q ss_pred CCCCCCCCEEEEEEcC-CcEEEEEEcCCCeeeeccceeeccccccCC------CCceEEeccCcEE-EEECCCHHHHhhh
Q 026506 13 TRCIKEGDLVIVYERH-DCMKAVKVCQNSAFQNRFGAFKHSDWIGKP------FGSMVFSNKGGFV-YLLAPTPELWTLV 84 (237)
Q Consensus 13 ~~~~~~Gd~V~i~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~g~~~~~~~~~~~-~~~~~~~~~~~~~ 84 (237)
...|++||||.+.... + ||.|..|+.|..+.|+..... .|. ...|++. |...|.... ..
T Consensus 79 v~~~~vGdrV~~~~~~~~--------cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~---~~~G~~aey~~v~~~~~--~~ 145 (375)
T PLN02178 79 VTKFKEGDRVGVGVIIGS--------CQSCESCNQDLENYCPKVVFTYNSRSSDGT---RNQGGYSDVIVVDHRFV--LS 145 (375)
T ss_pred CCccCCCCEEEEcCccCC--------CCCChhHhCcchhcCCCccccccccccCCC---cCCCccccEEEEchHHe--EE
Confidence 3468999999875432 3 889999999988888642110 011 1134444 444443221 11
Q ss_pred cCCc-----ccccccccH-HH-HHHhcC--CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHH-HHHHHHHH
Q 026506 85 LSHR-----TQILYIADI-SF-VIMYLE--LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQR-AASAREDF 153 (237)
Q Consensus 85 ~~~~-----~~~~~~~~~-~~-~~~~~~--~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~-~~~a~~~~ 153 (237)
++.. +..+..... .. .+.... .+++++|+..|+|+ |..+.++++..+ .++++++.+++. .+.+++
T Consensus 146 lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~~-- 221 (375)
T PLN02178 146 IPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAIDR-- 221 (375)
T ss_pred CCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHHh--
Confidence 1211 111111111 11 222232 35799999999988 788888888864 468888877543 455543
Q ss_pred HHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 154 ERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 154 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.|.+..+... +.. .+.... +.+|+++.....+ ..+..+.+.++++|+++.++.
T Consensus 222 --lGa~~~i~~~--~~~--~v~~~~-~~~D~vid~~G~~-~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 222 --LGADSFLVTT--DSQ--KMKEAV-GTMDFIIDTVSAE-HALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred --CCCcEEEcCc--CHH--HHHHhh-CCCcEEEECCCcH-HHHHHHHHhhcCCCEEEEEcc
Confidence 5654322211 100 111111 3589977655443 368889999999999997763
No 235
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=98.68 E-value=2.4e-07 Score=78.91 Aligned_cols=183 Identities=20% Similarity=0.261 Sum_probs=102.5
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhh--------
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLV-------- 84 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~-------- 84 (237)
..|++||||+..+..+ |+.|..|..|...+|.... ..| ....|.+. +...+....+...
T Consensus 107 ~~~~~Gd~V~~~~~~~--------~~~~~~c~~~~~~~~~~~~-~~g---~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~ 174 (384)
T cd08265 107 KNFEKGDPVTAEEMMW--------CGMCRACRSGSPNHCKNLK-ELG---FSADGAFAEYIAVNARYAWEINELREIYSE 174 (384)
T ss_pred CCCCCCCEEEECCCCC--------CCCChhhhCcCcccCCCcc-eee---ecCCCcceeeEEechHHeEECCcccccccc
Confidence 3588999999987667 8888888888766665211 011 11123333 3333321111100
Q ss_pred -cC-CcccccccccHHH-HH-Hh-cCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 026506 85 -LS-HRTQILYIADISF-VI-MY-LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158 (237)
Q Consensus 85 -~~-~~~~~~~~~~~~~-~~-~~-~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~ 158 (237)
.. ..+....+...+. .+ .. .+++++++||..|+|. |..++++++..+ ..++++++.+++..+.+++ .|+
T Consensus 175 ~~~~~~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~ 249 (384)
T cd08265 175 DKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGA 249 (384)
T ss_pred CCCHHHhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCC
Confidence 00 0111111211111 22 22 4678899999999887 777777787763 3479999988887776666 455
Q ss_pred CCcEEEEEc---cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 159 SSFVTVGVR---DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 159 ~~~i~~~~~---d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+..+..... +..........+..+|+|+.....+...+..+.+.|+++|+++.++
T Consensus 250 ~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 250 DYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEEC
Confidence 332222211 1111000011124699987554443457888999999999999775
No 236
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.67 E-value=1.8e-07 Score=77.49 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=72.4
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---------CCCcEEEEEccccCC----CC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---------VSSFVTVGVRDIQGQ----GF 174 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~~i~~~~~d~~~~----~~ 174 (237)
++.+|||+|||-|+.+.-+... .-..++++|++...++.|+++..... ..-...+...|.... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999998877666554 34799999999999999999883211 011245677776642 12
Q ss_pred CCCCCCCCCEEEEeCC---------ChhchHHHHHhcccCCCEEEEEeCCHHHH
Q 026506 175 PDEFSGLADSIFLDLP---------QPWLAIPSAKKMLKQDGILCSFSPCIEQV 219 (237)
Q Consensus 175 ~~~~~~~~D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 219 (237)
+. ....||+|-+-.. .....|.++...|+|||+++...|..+.+
T Consensus 140 ~~-~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 140 PP-RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp SS-TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cc-cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 22 1248999865322 11247999999999999999888866554
No 237
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.66 E-value=5.5e-08 Score=73.97 Aligned_cols=114 Identities=24% Similarity=0.291 Sum_probs=71.7
Q ss_pred HHHHHHhcCCCC-CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506 97 ISFVIMYLELVP-GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (237)
Q Consensus 97 ~~~~~~~~~~~~-~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 175 (237)
+..+++++.-.| ...|.|+|||.+.++..+. ...+|+.+|+-.. .. .+...|+...+++
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva~--------------n~--~Vtacdia~vPL~ 119 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVAP--------------NP--RVTACDIANVPLE 119 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------ST--TEEES-TTS-S--
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccCC--------------CC--CEEEecCccCcCC
Confidence 344677776444 5699999999998884432 2357999998431 12 3566888776676
Q ss_pred CCCCCCCCEEEEeCC----ChhchHHHHHhcccCCCEEEEEeCCH--HHHHHHHHHHHh-cCccc
Q 026506 176 DEFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSPCI--EQVQRSCESLRL-NFTGK 233 (237)
Q Consensus 176 ~~~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~-~f~~v 233 (237)
. +.+|+++.+.. +...++.++.|.|||||.|.+..... ...+.+.+.+.. ||...
T Consensus 120 ~---~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~ 181 (219)
T PF05148_consen 120 D---ESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLK 181 (219)
T ss_dssp T---T-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEE
T ss_pred C---CceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEE
Confidence 6 78999987643 44579999999999999999876443 457888888888 88643
No 238
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.66 E-value=6e-07 Score=69.37 Aligned_cols=105 Identities=25% Similarity=0.395 Sum_probs=80.9
Q ss_pred HHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHH----HHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR----AASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~----~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 176 (237)
++.++++||.+||-+|+++|....+++.-.++...|+++|.++.. +.+|+++ .| |-.+..|+.......
T Consensus 149 vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------tN-iiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 149 VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------TN-IIPIIEDARHPAKYR 221 (317)
T ss_pred ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------CC-ceeeeccCCCchhee
Confidence 356678999999999999999999999999999999999998653 4444432 24 777888987532223
Q ss_pred CCCCCCCEEEEeCCChhc---hHHHHHhcccCCCEEEEE
Q 026506 177 EFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 177 ~~~~~~D~v~~~~~~~~~---~l~~~~~~L~~gG~l~~~ 212 (237)
..-+-+|+||.|.+.+.+ +.-++...||+||-++++
T Consensus 222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 333578999999887753 456678899999988865
No 239
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.65 E-value=1.1e-07 Score=73.33 Aligned_cols=123 Identities=20% Similarity=0.172 Sum_probs=74.0
Q ss_pred cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-------HcCC-CCcEE
Q 026506 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-------RTGV-SSFVT 163 (237)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~i~ 163 (237)
+.+.....+++.+++.+++..+|+|||.|....+.+... +..+.+|+|+.+...+.|+.... ..+. ...++
T Consensus 26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205)
T PF08123_consen 26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205)
T ss_dssp CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence 334445567788899999999999999999998888775 44679999999998887765332 2333 23477
Q ss_pred EEEccccCCCCCCCCCCCCCEEEEeCCC----hhchHHHHHhcccCCCEEEEEeCC
Q 026506 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQ----PWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
+..+|+.+..+....-...|+||+|.-. ....+.+....||+|.+++...+.
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred eeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 8888887522211111358999987542 234567777889999998854443
No 240
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.64 E-value=8.7e-07 Score=73.64 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=91.0
Q ss_pred cccccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhC---C----------------------------Cc----
Q 026506 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA---P----------------------------TG---- 134 (237)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~---~----------------------------~~---- 134 (237)
+.+-...++.++.+.+..++..++|--||+|++.+..|.... | ..
T Consensus 173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 334444444577888999999999999999999988765531 0 01
Q ss_pred ---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCC------h-------hchHHH
Q 026506 135 ---HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQ------P-------WLAIPS 198 (237)
Q Consensus 135 ---~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~------~-------~~~l~~ 198 (237)
.++++|+++.+++.|+.|+...|+.+.|++.+.|+.. +.... ..+|+|+.|+|- . .++.+.
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~--l~~~~-~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~ 329 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATD--LKEPL-EEYGVVISNPPYGERLGSEALVAKLYREFGRT 329 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhh--CCCCC-CcCCEEEeCCCcchhcCChhhHHHHHHHHHHH
Confidence 3789999999999999999999999989999999975 33311 579999999871 1 123345
Q ss_pred HHhcccCCCEEEEEeC
Q 026506 199 AKKMLKQDGILCSFSP 214 (237)
Q Consensus 199 ~~~~L~~gG~l~~~~~ 214 (237)
+.+.++..++.++.++
T Consensus 330 lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 330 LKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHhcCCceEEEEcc
Confidence 5577777777776665
No 241
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.63 E-value=3.7e-07 Score=71.81 Aligned_cols=88 Identities=23% Similarity=0.226 Sum_probs=65.8
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
...++||||+|-|..+..++... .+|++.|.|+.|....++ .|. ++...|- +.. .+.+||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----kg~----~vl~~~~----w~~-~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----KGF----TVLDIDD----WQQ-TDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----CCC----eEEehhh----hhc-cCCceEEEee
Confidence 45689999999999999999886 679999999999776665 353 3332221 211 1257999864
Q ss_pred -e----CCChhchHHHHHhcccCCCEEEE
Q 026506 188 -D----LPQPWLAIPSAKKMLKQDGILCS 211 (237)
Q Consensus 188 -~----~~~~~~~l~~~~~~L~~gG~l~~ 211 (237)
| ...|..+|+.+++.|+|+|++++
T Consensus 158 LNvLDRc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 158 LNVLDRCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred hhhhhccCCHHHHHHHHHHHhCCCCEEEE
Confidence 2 35677899999999999999873
No 242
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.62 E-value=2e-07 Score=69.56 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=57.8
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccCCCCCCCCCCCCCEEEE-----eCCChhchHHHHHhcccCCCEE
Q 026506 137 YTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209 (237)
Q Consensus 137 ~~vD~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l 209 (237)
+++|+|++|++.|+++..... ..+++++..+|+.+.+++. +.||+|++ +.+++..+++++.+.|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 379999999999987754322 1234899999998755554 68999975 3456778999999999999999
Q ss_pred EEEe
Q 026506 210 CSFS 213 (237)
Q Consensus 210 ~~~~ 213 (237)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 8664
No 243
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=98.62 E-value=5.8e-07 Score=76.26 Aligned_cols=186 Identities=15% Similarity=0.108 Sum_probs=100.6
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC--C-------------CceE--EeccCcEE-EEEC
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP--F-------------GSMV--FSNKGGFV-YLLA 75 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~-------------g~~~--~~~~~~~~-~~~~ 75 (237)
..+++||||......+ ||+|.+|+.|..+.|...... . |... ....|++. |...
T Consensus 80 ~~~~~Gd~V~~~~~~~--------c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v 151 (373)
T cd08299 80 TTVKPGDKVIPLFVPQ--------CGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVV 151 (373)
T ss_pred ccCCCCCEEEECCCCC--------CCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEe
Confidence 3589999999876666 889999998887777632110 0 0000 00123333 2333
Q ss_pred CCHHHHhh--hcCC-cccccc-cccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 026506 76 PTPELWTL--VLSH-RTQILY-IADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAAS 148 (237)
Q Consensus 76 ~~~~~~~~--~~~~-~~~~~~-~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~ 148 (237)
|....+.. .++. ....+. +...++ +....+++++++||.+|+|. |..+..+++..+ ..+|++++.+++..+.
T Consensus 152 ~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~ 230 (373)
T cd08299 152 DEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAG-ASRIIAVDINKDKFAK 230 (373)
T ss_pred cccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHH
Confidence 32211110 0110 111111 111111 23456788899999998877 666777777753 2479999999988888
Q ss_pred HHHHHHHcCCCCcEEEEEcc--ccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhc-ccCCCEEEEEeC
Q 026506 149 AREDFERTGVSSFVTVGVRD--IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKM-LKQDGILCSFSP 214 (237)
Q Consensus 149 a~~~~~~~~~~~~i~~~~~d--~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~-L~~gG~l~~~~~ 214 (237)
+++ .|++..+.....+ ... .+.....+.+|+++-....+ ..+..+... ++++|+++.++.
T Consensus 231 a~~----lGa~~~i~~~~~~~~~~~-~v~~~~~~~~d~vld~~g~~-~~~~~~~~~~~~~~G~~v~~g~ 293 (373)
T cd08299 231 AKE----LGATECINPQDYKKPIQE-VLTEMTDGGVDFSFEVIGRL-DTMKAALASCHEGYGVSVIVGV 293 (373)
T ss_pred HHH----cCCceEecccccchhHHH-HHHHHhCCCCeEEEECCCCc-HHHHHHHHhhccCCCEEEEEcc
Confidence 855 4654323322111 111 01111114699876544433 356665554 467999987763
No 244
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.61 E-value=7.3e-08 Score=71.63 Aligned_cols=93 Identities=24% Similarity=0.272 Sum_probs=76.4
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
.+.+.|+|+|+|-++...+.. +.+|+++|.+|...+.|++|+...|..+ ++++.+|+.+..+. ..|+|++.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~fe-----~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYDFE-----NADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEeccccccccc-----ccceeHHH
Confidence 379999999999999877776 3789999999999999999987677666 99999999875553 47998765
Q ss_pred CCC-------hhchHHHHHhcccCCCEEE
Q 026506 189 LPQ-------PWLAIPSAKKMLKQDGILC 210 (237)
Q Consensus 189 ~~~-------~~~~l~~~~~~L~~gG~l~ 210 (237)
+-+ ....+..+++.|+..+.++
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 432 2357888999999999887
No 245
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.60 E-value=7.5e-08 Score=74.40 Aligned_cols=99 Identities=24% Similarity=0.269 Sum_probs=69.5
Q ss_pred EEEEEccCccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CCCCCCCCEEEE
Q 026506 111 LVLESGTGSGSLTTSLARAVAPT--GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLADSIFL 187 (237)
Q Consensus 111 ~vldiG~G~G~~~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D~v~~ 187 (237)
+|||+|||.|.....+++-. ++ -.++++|.+|.+++..+++..... .+......|+....+. ....+.+|.|.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence 89999999999998888764 33 689999999999999988653221 3344455555442211 112378898742
Q ss_pred ----eC---CChhchHHHHHhcccCCCEEEEE
Q 026506 188 ----DL---PQPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 188 ----~~---~~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
.+ .....+++++.++|||||.|++=
T Consensus 151 IFvLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 151 IFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EEEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 22 23346899999999999999843
No 246
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=4.7e-07 Score=67.32 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=79.5
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccC--------CCCCC
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQG--------QGFPD 176 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~--------~~~~~ 176 (237)
++|+++|||+||.+|.++....+..+|.+.|.++|+-+- ..... ..++.+ |+.+ +.++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEG-ATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCC-cccccccccCCHHHHHHHHHhCCC
Confidence 578999999999999999888888888999999998321 11112 233333 5543 12222
Q ss_pred CCCCCCCEEEEeCCCh---------h-------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccccc
Q 026506 177 EFSGLADSIFLDLPQP---------W-------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGKES 235 (237)
Q Consensus 177 ~~~~~~D~v~~~~~~~---------~-------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v~~ 235 (237)
..+|+|+.|+... . +++.-+...++|+|.++.-.-..++..++...|.+.|++|+.
T Consensus 135 ---r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~ 206 (232)
T KOG4589|consen 135 ---RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKK 206 (232)
T ss_pred ---CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEe
Confidence 6799999886422 1 234455677889999886555556677777888878887764
No 247
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=98.59 E-value=8.1e-07 Score=74.92 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=100.7
Q ss_pred CCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE----EeccCcEE-EEECCCHHHHhhhcCCc--
Q 026506 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV----FSNKGGFV-YLLAPTPELWTLVLSHR-- 88 (237)
Q Consensus 16 ~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~-- 88 (237)
|++||+|+.....+ |+.|.+|+.|..+.|+.. ..+|... ....|++. |...|... +...++..
T Consensus 82 ~~~Gd~V~~~~~~~--------~~~c~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~g~~a~~~~v~~~~-~~~~lP~~~~ 151 (361)
T cd08231 82 LKVGDRVTWSVGAP--------CGRCYRCLVGDPTKCENR-KKYGHEASCDDPHLSGGYAEHIYLPPGT-AIVRVPDNVP 151 (361)
T ss_pred cCCCCEEEEcccCC--------CCCChhHhCcCccccccc-hhccccccccCCCCCcccceEEEecCCC-ceEECCCCCC
Confidence 99999999987666 888999988866666532 1111100 00123332 33333211 01111111
Q ss_pred --c-ccc-ccccHH-HHHHhcCC-CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 026506 89 --T-QIL-YIADIS-FVIMYLEL-VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF 161 (237)
Q Consensus 89 --~-~~~-~~~~~~-~~~~~~~~-~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ 161 (237)
. ..+ .+...+ ..+..+.. .++.+||..|+|. |..+.++++..+ ..++++++.+++..+.+++ .+++..
T Consensus 152 ~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~v 226 (361)
T cd08231 152 DEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAG-ARRVIVIDGSPERLELARE----FGADAT 226 (361)
T ss_pred HHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCCeE
Confidence 1 111 111111 12333443 4889999999877 777778888763 2389999988888777754 455332
Q ss_pred EEEEEccccC--CCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 162 VTVGVRDIQG--QGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 162 i~~~~~d~~~--~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+.....+..+ ..+.. ..+..+|+++..... ...+..+.+.|+++|+++.++.
T Consensus 227 i~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 227 IDIDELPDPQRRAIVRDITGGRGADVVIEASGH-PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EcCcccccHHHHHHHHHHhCCCCCcEEEECCCC-hHHHHHHHHHhccCCEEEEEcC
Confidence 2222111100 00100 111469997755443 2367888999999999997764
No 248
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.59 E-value=7e-07 Score=79.06 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=58.5
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC--CCCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAP-------TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PDEF 178 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~ 178 (237)
...+|+|.+||+|.+...++..+.. ...++++|+++..++.++.++...+... +++...|.....+ ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~-~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLE-INVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCC-ceeeecccccccccccccc
Confidence 3469999999999999988876521 2578999999999999999987665222 5556666543211 1111
Q ss_pred CCCCCEEEEeCC
Q 026506 179 SGLADSIFLDLP 190 (237)
Q Consensus 179 ~~~~D~v~~~~~ 190 (237)
.+.||+|+.|+|
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 257999999886
No 249
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.59 E-value=8.4e-07 Score=69.63 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=63.7
Q ss_pred HHHhcCC-CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506 100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (237)
Q Consensus 100 ~~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 177 (237)
++..+++ .++.++||+|||+|.++..+++. +..+|+++|+++.++.. .+++ .....+...|+....+.+.
T Consensus 66 ~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~------~~v~~~~~~ni~~~~~~~~ 137 (228)
T TIGR00478 66 ALEEFNIDVKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD------ERVKVLERTNIRYVTPADI 137 (228)
T ss_pred HHHhcCCCCCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC------CCeeEeecCCcccCCHhHc
Confidence 4444443 46789999999999999988886 35789999999977765 3321 1112233334432111110
Q ss_pred --CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506 178 --FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 178 --~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
.-..+|++|+.... .+..+.+.|++ |.++++
T Consensus 138 ~~d~~~~DvsfiS~~~---~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 138 FPDFATFDVSFISLIS---ILPELDLLLNP-NDLTLL 170 (228)
T ss_pred CCCceeeeEEEeehHh---HHHHHHHHhCc-CeEEEE
Confidence 01357877765432 68888999999 776644
No 250
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.2e-06 Score=74.65 Aligned_cols=121 Identities=17% Similarity=0.267 Sum_probs=82.1
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
+-++++..++..++|+.||||.+++.+++.. .+|+++|++++.++.|+.|+..+|+.| .+++++-+++ .++....
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~-~~~sl~~ 449 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED-LFPSLLT 449 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccc-eeeeecchhh-ccchhcc
Confidence 5677888899999999999999998888774 789999999999999999999999988 9999885443 2222111
Q ss_pred C---CCC-EEEEeCCCh---hchHHHHHhcccCCCEEEEEeCCHHH--HHHHHHHHH
Q 026506 180 G---LAD-SIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQ--VQRSCESLR 227 (237)
Q Consensus 180 ~---~~D-~v~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~l~ 227 (237)
. .-+ ++++|+|.. ..+++.+...-++--.+ |..|... ...+....+
T Consensus 450 ~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlv--yvSCn~~t~ar~v~~lc~ 504 (534)
T KOG2187|consen 450 PCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLV--YVSCNPHTAARNVIDLCS 504 (534)
T ss_pred cCCCCCceEEEECCCcccccHHHHHHHHhccCccceE--EEEcCHHHhhhhHHHhhc
Confidence 1 345 567787743 23344433333243333 3434322 455554444
No 251
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=98.58 E-value=1.3e-06 Score=73.81 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=69.5
Q ss_pred HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc--cccCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDEF 178 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~ 178 (237)
...++.++++||..|+|. |..+.++++..+ ...+++++.+++..+.+++ .|....+..... ++.+ .+....
T Consensus 177 ~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~-~l~~~~ 250 (365)
T cd05279 177 NTAKVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVE-VLTEMT 250 (365)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHH-HHHHHh
Confidence 345678899999999887 777777888763 3468889988888888755 454332332222 2111 011111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhccc-CCCEEEEEeC
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFSP 214 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~ 214 (237)
++.+|+++..... ...+..+.+.|+ ++|+++.++.
T Consensus 251 ~~~~d~vid~~g~-~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 251 DGGVDYAFEVIGS-ADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred CCCCcEEEECCCC-HHHHHHHHHHhccCCCEEEEEec
Confidence 2569998754433 347888999999 9999987653
No 252
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=98.57 E-value=7.9e-07 Score=74.18 Aligned_cols=177 Identities=23% Similarity=0.239 Sum_probs=101.4
Q ss_pred CCCCCCCEEEEEE-cCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc---
Q 026506 14 RCIKEGDLVIVYE-RHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR--- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 88 (237)
..+++||||++.. ... ||.|..|..|.++.|.... ..|. ...|.+. +...|.. +...++..
T Consensus 74 ~~~~~Gd~V~~~~~~~~--------~~~~~~~~~g~~~~c~~~~-~~~~---~~~g~~a~~~~v~~~--~~~~lp~~~~~ 139 (333)
T cd08296 74 SRWKVGDRVGVGWHGGH--------CGTCDACRRGDFVHCENGK-VTGV---TRDGGYAEYMLAPAE--ALARIPDDLDA 139 (333)
T ss_pred ccCCCCCEEEeccccCC--------CCCChhhhCcCcccCCCCC-ccCc---ccCCcceeEEEEchh--heEeCCCCCCH
Confidence 3588999998743 223 8999999999888886321 1111 1122222 2222221 11111111
Q ss_pred --ccccc-cccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 89 --TQILY-IADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 89 --~~~~~-~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
...+. ....+ ..+..+.+.++++||..|+|. |..+.++++..+ .++++++.+++..+.+++ .|.+..+.
T Consensus 140 ~~aa~l~~~~~ta~~~~~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~~~i~ 213 (333)
T cd08296 140 AEAAPLLCAGVTTFNALRNSGAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARK----LGAHHYID 213 (333)
T ss_pred HHhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH----cCCcEEec
Confidence 11111 11111 123445778899999999877 777778888763 479999999888888865 45433222
Q ss_pred EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
....+... .+... ..+|+++..... ...++.+.+.|+++|+++.++.
T Consensus 214 ~~~~~~~~-~~~~~--~~~d~vi~~~g~-~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 214 TSKEDVAE-ALQEL--GGAKLILATAPN-AKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CCCccHHH-HHHhc--CCCCEEEECCCc-hHHHHHHHHHcccCCEEEEEec
Confidence 22222211 11111 358997754322 3478889999999999997753
No 253
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=98.55 E-value=1.4e-06 Score=73.41 Aligned_cols=181 Identities=17% Similarity=0.166 Sum_probs=98.6
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE---EeccCcEE-EEECCCHHHHhhhcCCc-
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV---FSNKGGFV-YLLAPTPELWTLVLSHR- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~- 88 (237)
..|++||||.+....+ .|+.|.+|+.|..+.|......++... ....|.+. |...|....+ ..+..
T Consensus 83 ~~~~~Gd~V~~~~~~~-------~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~--~iP~~~ 153 (357)
T PLN02514 83 SKFTVGDIVGVGVIVG-------CCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVV--KIPEGM 153 (357)
T ss_pred ccccCCCEEEEcCccc-------cCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeE--ECCCCC
Confidence 4689999998744221 288999999998887763211100000 00123333 3444432211 11111
Q ss_pred ----ccccccc-cHHH-HHHhcC-CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026506 89 ----TQILYIA-DISF-VIMYLE-LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS 160 (237)
Q Consensus 89 ----~~~~~~~-~~~~-~~~~~~-~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 160 (237)
...+... ..+. .+..+. .+++++++..|+|+ |..+.++++..+ .++++++.+++..+.+.+. .|.+.
T Consensus 154 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~---~Ga~~ 228 (357)
T PLN02514 154 APEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEH---LGADD 228 (357)
T ss_pred CHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHh---cCCcE
Confidence 1111111 1111 222233 46899999999888 778888888863 4688888777766555432 45432
Q ss_pred cEEEEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 161 FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 161 ~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.+.. .+. ..+.... ..+|+++...+.. ..+..+.+.|+++|+++.++.
T Consensus 229 ~i~~--~~~--~~~~~~~-~~~D~vid~~g~~-~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 229 YLVS--SDA--AEMQEAA-DSLDYIIDTVPVF-HPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred EecC--CCh--HHHHHhc-CCCcEEEECCCch-HHHHHHHHHhccCCEEEEECC
Confidence 1111 110 1111111 3589977655433 378889999999999997764
No 254
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.55 E-value=9.7e-07 Score=68.21 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=77.5
Q ss_pred EEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe-CC
Q 026506 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD-LP 190 (237)
Q Consensus 112 vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~-~~ 190 (237)
|+|+||-.|++.+.++.. +...+++++|+++.-++.|++++...++.+++++..+|..+ .++.. ...|.|++. ++
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~--e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPG--EDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GG--G---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCC--CCCCEEEEecCC
Confidence 689999999999999887 45578999999999999999999999998889999999873 44441 237888764 33
Q ss_pred Ch--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 191 QP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 191 ~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
.. .+.+++....++..-.++ +.|.. ....+.++|.+ +|.
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lI-LqP~~-~~~~LR~~L~~~gf~ 118 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLI-LQPNT-HAYELRRWLYENGFE 118 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEE-EEESS--HHHHHHHHHHTTEE
T ss_pred HHHHHHHHHhhHHHhccCCeEE-EeCCC-ChHHHHHHHHHCCCE
Confidence 22 245666666666555555 66654 45666667777 665
No 255
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.54 E-value=2.8e-06 Score=68.13 Aligned_cols=88 Identities=22% Similarity=0.294 Sum_probs=70.8
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE 177 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~ 177 (237)
++..+.++++...+|.--|.|+.+..++..+++.++++++|.++.+++.|++.+..++ .++.+++.++.+. .++..
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence 6778889999999999999999999999998777889999999999999999987655 5588888887651 11221
Q ss_pred CCCCCCEEEEeC
Q 026506 178 FSGLADSIFLDL 189 (237)
Q Consensus 178 ~~~~~D~v~~~~ 189 (237)
..+.+|-|+.|.
T Consensus 93 ~i~~vDGiL~DL 104 (314)
T COG0275 93 GIGKVDGILLDL 104 (314)
T ss_pred CCCceeEEEEec
Confidence 125788887654
No 256
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.54 E-value=3.1e-07 Score=73.86 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=79.8
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-CCC----cEEEEEccccCCCCCCCC--
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-VSS----FVTVGVRDIQGQGFPDEF-- 178 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~----~i~~~~~d~~~~~~~~~~-- 178 (237)
.++++.++++|||-|+-++.+-.+ +-..++++|+.+..++.|+++..... ... ...++.+|-....+....
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 467899999999999887766544 34789999999999999988765432 111 256777776542111110
Q ss_pred -CCCCCEEEEe---------CCChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506 179 -SGLADSIFLD---------LPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (237)
Q Consensus 179 -~~~~D~v~~~---------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 228 (237)
..+||+|-+- -....-++.++.+.|+|||.++-..|... .+.+.|+.
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd---~Ii~rlr~ 249 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD---VIIKRLRA 249 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH---HHHHHHHh
Confidence 1349998431 11223479999999999999997777554 45555554
No 257
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=98.54 E-value=6.7e-07 Score=75.64 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=69.0
Q ss_pred hcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
...+.++++||..|+|. |..+.++++..+ ...+++++.+++..+.+++ .+.+..+.....++.+ .+....+.+
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~-~v~~~~~~~ 254 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVA-AIREITGGG 254 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHH-HHHHHhCCC
Confidence 45678899999999877 777888888864 3479999999988887765 3443212211112111 011001256
Q ss_pred CCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+|+|+-..... ..+..+.+.|+++|+++.++.
T Consensus 255 ~d~vld~~g~~-~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 255 VDYALDTTGVP-AVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CcEEEECCCCc-HHHHHHHHHhccCCEEEEeCc
Confidence 99977555433 378899999999999998764
No 258
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.53 E-value=1.2e-06 Score=70.39 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=64.8
Q ss_pred CCEEEEEccCccHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 109 GCLVLESGTGSGSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 109 ~~~vldiG~G~G~~-~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
..+|+=||+|+=-+ ++.++...+....++.+|+++++.+.+++.+. ..++...+.+..+|..+..... ..||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl---~~~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL---KEYDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---ccCCEEE
Confidence 35999999999554 45556555556789999999999999999877 5566677999999987532222 5799998
Q ss_pred EeCC------ChhchHHHHHhcccCCCEEEEEe
Q 026506 187 LDLP------QPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 187 ~~~~------~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+..- .-.+.++++.+.++||..+++=+
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 7542 44579999999999999988543
No 259
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=98.52 E-value=1.4e-06 Score=72.89 Aligned_cols=185 Identities=18% Similarity=0.152 Sum_probs=97.8
Q ss_pred CCCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc---
Q 026506 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR--- 88 (237)
Q Consensus 13 ~~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 88 (237)
...+++||+|......+ ||.|.+|..|...+|+. +...........|.+. |...+..+.+...++..
T Consensus 73 v~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~ 143 (347)
T cd05278 73 VKRLKPGDRVSVPCITF--------CGRCRFCRRGYHAHCEN-GLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPD 143 (347)
T ss_pred ccccCCCCEEEecCCCC--------CCCChhHhCcCcccCcC-CCcccccccCCCCeeeEEEEecchhCeEEECCCCCCH
Confidence 34589999999977556 88888888887666652 1100000000112222 22222110010111100
Q ss_pred ---ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 89 ---TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 89 ---~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
..+......+ ..+...+..++++||..|+|. |..++++++..+ ...+++++.++...+.+++ .+....+.
T Consensus 144 ~~aa~l~~~~~ta~~~~~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~ 218 (347)
T cd05278 144 EDALMLSDILPTGFHGAELAGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIIN 218 (347)
T ss_pred HHHhhhcchhhheeehhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEc
Confidence 0000000000 012344577899999988765 677777888763 2478888888877777665 34322222
Q ss_pred EEEccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 164 VGVRDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 164 ~~~~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
....++.+ .+.. ..+..+|+++..... ...++.+.+.|+++|+++.++
T Consensus 219 ~~~~~~~~-~i~~~~~~~~~d~vld~~g~-~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 219 PKNGDIVE-QILELTGGRGVDCVIEAVGF-EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCcchHHH-HHHHHcCCCCCcEEEEccCC-HHHHHHHHHHhhcCCEEEEEc
Confidence 22222211 0100 111469997754433 247888999999999998664
No 260
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.52 E-value=1.5e-06 Score=71.10 Aligned_cols=120 Identities=17% Similarity=0.146 Sum_probs=87.8
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---c--C-CCCcEEEEEccccCCCCCCCCC
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER---T--G-VSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~--~-~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
++...++|.+|.|-|.-...+.+. +...+++-+|.+|.+++.++++... + . .+.++.+...|+.+ +.....
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~--wlr~a~ 363 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ--WLRTAA 363 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH--HHHhhc
Confidence 355679999999999999888887 3368999999999999999854322 1 1 13568888889876 333333
Q ss_pred CCCCEEEEeCCChh----------chHHHHHhcccCCCEEEEEeCCH----HHHHHHHHHHHh
Q 026506 180 GLADSIFLDLPQPW----------LAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRL 228 (237)
Q Consensus 180 ~~~D~v~~~~~~~~----------~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~l~~ 228 (237)
..||.|+.|.++|. ++...+.+.|+++|.+++-.... +...++...+++
T Consensus 364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~ 426 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKS 426 (508)
T ss_pred ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHh
Confidence 68999999988774 46777889999999999765432 223444555555
No 261
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=98.51 E-value=9.4e-07 Score=74.00 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=67.7
Q ss_pred hcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
...+.++.++|..|+|. |..+.++++..+. .++++++.++...+.+++ .+.+..+.....+..........+..
T Consensus 161 ~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 161 NGKVKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCC
Confidence 44578899999988876 6677778887632 578889998888777765 45543233332232110000011146
Q ss_pred CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+|+++...... ..++.+.+.|+++|+++.++
T Consensus 236 ~d~vld~~g~~-~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 236 VDVVIEAVGIP-ATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CCEEEECCCCH-HHHHHHHHhccCCcEEEEec
Confidence 99977554433 36788889999999998765
No 262
>PLN02702 L-idonate 5-dehydrogenase
Probab=98.51 E-value=8.8e-07 Score=74.83 Aligned_cols=182 Identities=17% Similarity=0.223 Sum_probs=103.7
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 88 (237)
..|++||+|......+ |+.|.+|+.|..+.|.... .++. ....|.+. |...|....+ .++..
T Consensus 93 ~~~~~Gd~V~~~~~~~--------~~~c~~c~~g~~~~c~~~~-~~~~--~~~~g~~~~y~~v~~~~~~--~~P~~l~~~ 159 (364)
T PLN02702 93 KHLVVGDRVALEPGIS--------CWRCNLCKEGRYNLCPEMK-FFAT--PPVHGSLANQVVHPADLCF--KLPENVSLE 159 (364)
T ss_pred CCCCCCCEEEEcCCCC--------CCCCcchhCcCcccCCCcc-ccCC--CCCCCcccceEEcchHHeE--ECCCCCCHH
Confidence 4589999999877666 8889999888877775211 0110 00123332 2333321111 11111
Q ss_pred -ccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506 89 -TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (237)
Q Consensus 89 -~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~ 165 (237)
.....+...+ ..+...++.++.+||.+|+|. |..+.++++..+ ...+++++.+++..+.+++ .+.+..+.+.
T Consensus 160 ~aa~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~ 234 (364)
T PLN02702 160 EGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQ----LGADEIVLVS 234 (364)
T ss_pred HHhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEecC
Confidence 1111111111 123456678899999998876 777788888764 3568899998888887665 4544322221
Q ss_pred --EccccCC--CCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 166 --VRDIQGQ--GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 166 --~~d~~~~--~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
..++.+. .+.....+.+|+|+...+.. ..+..+.+.|+++|+++.++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 235 TNIEDVESEVEEIQKAMGGGIDVSFDCVGFN-KTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred cccccHHHHHHHHhhhcCCCCCEEEECCCCH-HHHHHHHHHHhcCCEEEEEcc
Confidence 1122110 01001124699977655433 478999999999999987753
No 263
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=98.49 E-value=1.8e-06 Score=71.26 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=63.0
Q ss_pred CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
.+++++|.+|+|+ |.++.++++..+ ...++++|.++++++.+++. .. + |..+. . ..++|+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~~---i-----~~~~~--~---~~g~Dvv 204 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----EV---L-----DPEKD--P---RRDYRAI 204 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----cc---c-----Chhhc--c---CCCCCEE
Confidence 4578999999998 888888888863 35677889988887766541 11 1 11110 1 1469998
Q ss_pred EEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
|.....+ ..++.+.+.|+++|++++++.
T Consensus 205 id~~G~~-~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 205 YDASGDP-SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred EECCCCH-HHHHHHHHhhhcCcEEEEEee
Confidence 7665544 378999999999999997763
No 264
>PRK04148 hypothetical protein; Provisional
Probab=98.48 E-value=2.4e-06 Score=60.99 Aligned_cols=98 Identities=18% Similarity=0.099 Sum_probs=63.7
Q ss_pred HHHhcCCCCCCEEEEEccCccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGSGS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~-~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
+...+....+.+++|+|||+|. ++..+++. ...|+++|+++.+++.++++ + +++...|+++..+.-
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~-- 74 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEI-- 74 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHH--
Confidence 3444444456899999999997 66555543 37999999999999888774 3 678889998633331
Q ss_pred CCCCCEEEEeCCChhchHHHHHhccc-CCCEEEE
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCS 211 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~-~gG~l~~ 211 (237)
-..+|+|+.--|.+. ....+.++-+ -|.-+++
T Consensus 75 y~~a~liysirpp~e-l~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 75 YKNAKLIYSIRPPRD-LQPFILELAKKINVPLII 107 (134)
T ss_pred HhcCCEEEEeCCCHH-HHHHHHHHHHHcCCCEEE
Confidence 157999887544332 3333333333 3334443
No 265
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=98.47 E-value=1.5e-06 Score=72.91 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=100.5
Q ss_pred CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----c
Q 026506 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH-----R 88 (237)
Q Consensus 15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~ 88 (237)
.|++||+|......+ |+.|.+|+.|....|... ..+|.. ....|.+. +...+... +...++. .
T Consensus 85 ~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~g~~-~~~~g~~~~~~~~~~~~-~~~~lP~~~~~~~ 153 (350)
T cd08256 85 GVKVGDRVISEQIVP--------CWNCRFCNRGQYWMCQKH-DLYGFQ-NNVNGGMAEYMRFPKEA-IVHKVPDDIPPED 153 (350)
T ss_pred CCCCCCEEEECCcCC--------CCCChHHhCcCcccCcCc-cceeec-cCCCCcceeeEEccccc-ceEECCCCCCHHH
Confidence 689999999887666 888999998887777521 111110 00122222 22222110 0001110 1
Q ss_pred ccccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 026506 89 TQILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (237)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~ 166 (237)
...+.+..... .+......++++||..|+|. |..+.++++.++ ...+++++.+++..+.+++ .+.+..+....
T Consensus 154 aa~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~ 228 (350)
T cd08256 154 AILIEPLACALHAVDRANIKFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALARK----FGADVVLNPPE 228 (350)
T ss_pred HhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHHH----cCCcEEecCCC
Confidence 11111111111 23455678899999988877 777788888874 3568889988887776655 45432111111
Q ss_pred ccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 167 RDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 167 ~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.++.+ .+.. ..+.++|+++...+.. ..+..+.+.++++|+++.++
T Consensus 229 ~~~~~-~~~~~~~~~~vdvvld~~g~~-~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 229 VDVVE-KIKELTGGYGCDIYIEATGHP-SAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred cCHHH-HHHHHhCCCCCCEEEECCCCh-HHHHHHHHHhhcCCEEEEEc
Confidence 11111 0111 1113599977554433 36788899999999998764
No 266
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=1.7e-06 Score=66.95 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=85.2
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC-CCEEEE
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIFL 187 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-~D~v~~ 187 (237)
+.+++|||+|.|.-++.++-.. +..+++.+|....++.+.+......+++| +++.++.+.+ +... .. ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~--~~~~--~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEE--FGQE--KKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhh--cccc--cccCcEEEe
Confidence 6899999999999988888443 66779999999999999999999999988 9999988875 3321 23 999987
Q ss_pred eCCC-hhchHHHHHhcccCCCEEEEEe--CCHHHHHHHHHHHHh
Q 026506 188 DLPQ-PWLAIPSAKKMLKQDGILCSFS--PCIEQVQRSCESLRL 228 (237)
Q Consensus 188 ~~~~-~~~~l~~~~~~L~~gG~l~~~~--~~~~~~~~~~~~l~~ 228 (237)
-+-. -...++-+...+++||.++++- ...+...+..++...
T Consensus 142 RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~ 185 (215)
T COG0357 142 RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILP 185 (215)
T ss_pred ehccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHh
Confidence 6533 3347788899999999876442 223444444444444
No 267
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.44 E-value=1.9e-06 Score=67.35 Aligned_cols=111 Identities=21% Similarity=0.248 Sum_probs=79.0
Q ss_pred HHHHHhcCCCCCC-EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC
Q 026506 98 SFVIMYLELVPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (237)
Q Consensus 98 ~~~~~~~~~~~~~-~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 176 (237)
..++..+...++. .|.|+|||-+-++. . ...+|+.+|+-+ + + -++...|+.+.++++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a--------------~-~-~~V~~cDm~~vPl~d 226 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA--------------V-N-ERVIACDMRNVPLED 226 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec--------------C-C-CceeeccccCCcCcc
Confidence 3467777655544 77899999987764 1 236799999732 1 1 456778888766666
Q ss_pred CCCCCCCEEEEeCC----ChhchHHHHHhcccCCCEEEEEeCCH--HHHHHHHHHHHh-cCccc
Q 026506 177 EFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSPCI--EQVQRSCESLRL-NFTGK 233 (237)
Q Consensus 177 ~~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~-~f~~v 233 (237)
+++|+++.+.. +...++.++.++|++||.+++-.... .....+.+.+.. ||...
T Consensus 227 ---~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 227 ---ESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK 287 (325)
T ss_pred ---CcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence 88999987642 34468999999999999999765433 456667777777 77643
No 268
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.41 E-value=1.4e-06 Score=70.74 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=69.9
Q ss_pred CCEEEEEccCccHH----HHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHH------------------HHc-----C-
Q 026506 109 GCLVLESGTGSGSL----TTSLARAVA---PTGHVYTFDFHEQRAASAREDF------------------ERT-----G- 157 (237)
Q Consensus 109 ~~~vldiG~G~G~~----~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~------------------~~~-----~- 157 (237)
.-+|+..||++|-- ++.+.+..+ ...+|+|+|+|+..++.|++.. ... +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 36999999999952 333333321 1357999999999999998742 000 0
Q ss_pred ------CCCcEEEEEccccCCCCCCCCCCCCCEEEE-------eCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 158 ------VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 158 ------~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-------~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+...+.+...|+.+.+++. .+.||+|++ +......+++.+.+.|+|||.|+ +++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~--~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~-lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAV--PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLF-AGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCcc--CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEE-EeC
Confidence 1244677788887534432 168999986 22344578999999999999876 444
No 269
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.41 E-value=7.2e-08 Score=66.76 Aligned_cols=97 Identities=29% Similarity=0.305 Sum_probs=41.2
Q ss_pred EEEccCccHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506 113 LESGTGSGSLTTSLARAVAPTG--HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (237)
Q Consensus 113 ldiG~G~G~~~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 190 (237)
||+|+..|..+..+++.+.... +++++|..+. .+..++.++..+..+++++..++..+ .++....+++|++++|..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~-~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD-FLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THH-HHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH-HHHHcCCCCEEEEEECCC
Confidence 6899999999988887765443 7999999885 33344444445666669999999864 121111268999999986
Q ss_pred Ch----hchHHHHHhcccCCCEEEE
Q 026506 191 QP----WLAIPSAKKMLKQDGILCS 211 (237)
Q Consensus 191 ~~----~~~l~~~~~~L~~gG~l~~ 211 (237)
.. ...++.+.+.|+|||.+++
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 43 2468889999999999885
No 270
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.40 E-value=5.7e-06 Score=69.25 Aligned_cols=181 Identities=19% Similarity=0.202 Sum_probs=98.8
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCccc--
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRTQ-- 90 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 90 (237)
..+++||+|......+ ||.|..|..|...++.... -.+. ...|++. |...|........++....
T Consensus 73 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~---~~~g~~~~~~~v~~~~~~~~~lP~~l~~~ 140 (345)
T cd08287 73 TSVKPGDFVIAPFAIS--------DGTCPFCRAGFTTSCVHGG-FWGA---FVDGGQGEYVRVPLADGTLVKVPGSPSDD 140 (345)
T ss_pred CccCCCCEEEeccccC--------CCCChhhhCcCcccCCCCC-cccC---CCCCceEEEEEcchhhCceEECCCCCChh
Confidence 3588999998754444 7888888888766664211 1111 1123333 3333321111111111100
Q ss_pred --cc-------ccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 026506 91 --IL-------YIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS 159 (237)
Q Consensus 91 --~~-------~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 159 (237)
.. .....+ ..+......++.+|+..|+|. |..+.++++..+ ...+++++.+++..+.+++ .|++
T Consensus 141 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~ga~ 215 (345)
T cd08287 141 EDLLPSLLALSDVMGTGHHAAVSAGVRPGSTVVVVGDGAVGLCAVLAAKRLG-AERIIAMSRHEDRQALARE----FGAT 215 (345)
T ss_pred hhhhhhhHhhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCc
Confidence 00 000111 122345677899999999887 777778888763 3468999988877776665 4543
Q ss_pred CcEEEEEccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 160 SFVTVGVRDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 160 ~~i~~~~~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..++....+..+ .+.. .....+|+++..... ...+..+.+.++++|+++.++
T Consensus 216 ~v~~~~~~~~~~-~i~~~~~~~~~d~il~~~g~-~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 216 DIVAERGEEAVA-RVRELTGGVGADAVLECVGT-QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred eEecCCcccHHH-HHHHhcCCCCCCEEEECCCC-HHHHHHHHHhhccCCEEEEec
Confidence 322222111111 0100 111468997754433 347899999999999998765
No 271
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=98.39 E-value=3.4e-06 Score=72.48 Aligned_cols=108 Identities=22% Similarity=0.328 Sum_probs=68.0
Q ss_pred hcCCCCCCEEEEEc-cCc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHc----CCCC-cEEEEE-ccccCCC
Q 026506 103 YLELVPGCLVLESG-TGS-GSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERT----GVSS-FVTVGV-RDIQGQG 173 (237)
Q Consensus 103 ~~~~~~~~~vldiG-~G~-G~~~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~-~i~~~~-~d~~~~~ 173 (237)
...+++|++|+.+| +|+ |.++.++++..+ +..+++++|.++++++.+++..... |... .++... .++.+ .
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~-~ 248 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHA-T 248 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHH-H
Confidence 34678899999997 577 888888888763 2347999999999999998742111 2211 011110 11111 0
Q ss_pred CCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506 174 FPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 174 ~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
... ..+.++|+++...+.+ ..+..+.+.++++|.++++
T Consensus 249 v~~~t~g~g~D~vid~~g~~-~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 249 LMELTGGQGFDDVFVFVPVP-ELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHhCCCCCCEEEEcCCCH-HHHHHHHHHhccCCeEEEE
Confidence 100 1114699988765543 4788999999999877655
No 272
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=98.37 E-value=1.7e-06 Score=69.44 Aligned_cols=102 Identities=25% Similarity=0.315 Sum_probs=66.1
Q ss_pred CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
..++.+||..|+|+ |..+..+++..+ .++++++.+++..+.+++. +....++....+...... ......+|+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~~~~~~~d~ 204 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-LTGGGGADV 204 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-HhcCCCCCE
Confidence 47899999999987 666777777753 7899999998887777552 322211111111110000 011256999
Q ss_pred EEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
++...... ..+..+.+.|+++|+++.++..
T Consensus 205 vi~~~~~~-~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 205 VIDAVGGP-ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred EEECCCCH-HHHHHHHHhcccCCEEEEEccC
Confidence 88765542 3678889999999999977643
No 273
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.37 E-value=1.1e-05 Score=64.58 Aligned_cols=120 Identities=12% Similarity=0.123 Sum_probs=87.0
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
...-+||||.||+|.....+....+. ...+...|.++..++..++.++..|+.+.+++..+|+++..-.......++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 34569999999999998887777533 36889999999999999999999999997799999998732222222557888
Q ss_pred EEeC-----CChh---chHHHHHhcccCCCEEEEEe-CCHHHHHHHHHHH
Q 026506 186 FLDL-----PQPW---LAIPSAKKMLKQDGILCSFS-PCIEQVQRSCESL 226 (237)
Q Consensus 186 ~~~~-----~~~~---~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~l 226 (237)
++.. ++.. ..+..+.+++.|||.++.-. |.-.|++-.-..|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~L 263 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVL 263 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHH
Confidence 7643 2322 35788899999999998443 3444544333333
No 274
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.36 E-value=1.7e-06 Score=70.51 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=62.3
Q ss_pred HHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCC
Q 026506 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFP 175 (237)
Q Consensus 98 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~ 175 (237)
..+++.+.+.++..++|.--|.|+.+.+++..+++ ++++++|.++++++.+++++... .+++.+...++.+. .+.
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence 34778888999999999999999999999998865 99999999999999999876543 46699999988761 111
Q ss_pred CC-CCCCCCEEEEeCC
Q 026506 176 DE-FSGLADSIFLDLP 190 (237)
Q Consensus 176 ~~-~~~~~D~v~~~~~ 190 (237)
.. ....+|-|++|.+
T Consensus 87 ~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 87 ELNGINKVDGILFDLG 102 (310)
T ss_dssp HTTTTS-EEEEEEE-S
T ss_pred HccCCCccCEEEEccc
Confidence 11 1257999987654
No 275
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=98.36 E-value=3.3e-06 Score=71.29 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=65.8
Q ss_pred HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--CCCCCC
Q 026506 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEF 178 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~ 178 (237)
....+.++.+||..|+|. |..+..+++..+ ..++++++.+++..+.+++ .+....+.....+.... .+..
T Consensus 176 ~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~~-- 248 (363)
T cd08279 176 NTARVRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLTD-- 248 (363)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHcC--
Confidence 345678899999998876 777777887763 2358899888888777754 35422111111121110 1111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
...+|+++..... ...+..+.+.|+++|+++.++
T Consensus 249 ~~~vd~vld~~~~-~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 249 GRGADYAFEAVGR-AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCCEEEEcCCC-hHHHHHHHHHhhcCCeEEEEe
Confidence 2569987654432 347788999999999998775
No 276
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.35 E-value=1.2e-05 Score=67.43 Aligned_cols=179 Identities=18% Similarity=0.171 Sum_probs=101.4
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH----- 87 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 87 (237)
..|++||+|...+..+ |+.|..|..|....|..+.. .+. ....|.+. +...+... ...++.
T Consensus 74 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~--~~~~g~~~~~~~v~~~~--~~~lP~~~~~~ 140 (343)
T cd05285 74 THLKVGDRVAIEPGVP--------CRTCEFCKSGRYNLCPDMRF-AAT--PPVDGTLCRYVNHPADF--CHKLPDNVSLE 140 (343)
T ss_pred CCCCCCCEEEEccccC--------CCCChhHhCcCcccCcCccc-ccc--ccCCCceeeeEEecHHH--cEECcCCCCHH
Confidence 4589999999877666 88888898887766642211 000 00122222 22332211 111111
Q ss_pred cccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 026506 88 RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (237)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~ 165 (237)
.+..+.+...+ ..+....+.++++||..|+|. |..+.++++..+. ..+++++.+++..+.+++ .+.+..+...
T Consensus 141 ~aa~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~~vi~~~ 215 (343)
T cd05285 141 EGALVEPLSVGVHACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLEFAKE----LGATHTVNVR 215 (343)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----cCCcEEeccc
Confidence 11111111111 123566788999999988877 7777888887632 348888888888777755 3443322222
Q ss_pred Eccc---cC--CCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 166 VRDI---QG--QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 166 ~~d~---~~--~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..+. .+ ..... +.++|+|+...... ..+....+.|+++|+++.++
T Consensus 216 ~~~~~~~~~~~~~~~~--~~~~d~vld~~g~~-~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 216 TEDTPESAEKIAELLG--GKGPDVVIECTGAE-SCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred cccchhHHHHHHHHhC--CCCCCEEEECCCCH-HHHHHHHHHhhcCCEEEEEc
Confidence 2221 00 00111 14599977654432 37888899999999998765
No 277
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.34 E-value=3e-07 Score=70.12 Aligned_cols=77 Identities=23% Similarity=0.221 Sum_probs=63.6
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC----CCCCCCCCCCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ----GFPDEFSGLAD 183 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~~~~D 183 (237)
....|+|..||.|+.+++++... ..|+++|++|..+..|++|++..|+++++.++++|+.+. .+.. ..+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K---~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADK---IKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhh---heee
Confidence 45789999999999998888773 689999999999999999999999999999999999861 1111 3467
Q ss_pred EEEEeCC
Q 026506 184 SIFLDLP 190 (237)
Q Consensus 184 ~v~~~~~ 190 (237)
+|+..+|
T Consensus 168 ~vf~spp 174 (263)
T KOG2730|consen 168 CVFLSPP 174 (263)
T ss_pred eeecCCC
Confidence 8887654
No 278
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=98.33 E-value=6.9e-06 Score=68.67 Aligned_cols=179 Identities=20% Similarity=0.216 Sum_probs=96.3
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH----- 87 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 87 (237)
..|++||+|......+ |+.|++|..+....|.-. +.++ ....|.+. +...+.... ..++.
T Consensus 75 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~---~~~~g~~~~~~~~~~~~~--~~lp~~~~~~ 140 (340)
T TIGR00692 75 EGIKVGDYVSVETHIV--------CGKCYACRRGQYHVCQNT-KIFG---VDTDGCFAEYAVVPAQNI--WKNPKSIPPE 140 (340)
T ss_pred CcCCCCCEEEECCcCC--------CCCChhhhCcChhhCcCc-ceEe---ecCCCcceeEEEeehHHc--EECcCCCChH
Confidence 4589999999887666 777888877765555421 1111 00122222 222222111 11111
Q ss_pred cccccccccHHHHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 026506 88 RTQILYIADISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (237)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~ 166 (237)
.+....+...+.........++.+|+..|+|. |..+..+++..+ ...+++++.+++..+.+++ .+....+....
T Consensus 141 ~a~~~~~~~~a~~~~~~~~~~g~~vlI~~~g~vg~~a~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~ 215 (340)
T TIGR00692 141 YATIQEPLGNAVHTVLAGPISGKSVLVTGAGPIGLMAIAVAKASG-AYPVIVSDPNEYRLELAKK----MGATYVVNPFK 215 (340)
T ss_pred hhhhcchHHHHHHHHHccCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCcEEEcccc
Confidence 11111111111111123356788999888765 667777777763 2348888888887777665 35432222222
Q ss_pred ccccCC--CCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 167 RDIQGQ--GFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 167 ~d~~~~--~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.++.+. .+.. ..++|+++..... ...+..+.+.|+++|+++.++.
T Consensus 216 ~~~~~~l~~~~~--~~~~d~vld~~g~-~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 216 EDVVKEVADLTD--GEGVDVFLEMSGA-PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred cCHHHHHHHhcC--CCCCCEEEECCCC-HHHHHHHHHhhcCCCEEEEEcc
Confidence 222110 1111 1469997765343 2468888999999999988764
No 279
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.33 E-value=1e-05 Score=59.00 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=70.9
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccccCCCCCCCCCC
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
..+..+|+|+|||-|+++..++..+ .+..+|+++|.++...+.+.++....+ ....+.+...+...... . .
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-S---D 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-c---C
Confidence 4678899999999999999998833 356899999999999999999887766 43335555555442111 1 4
Q ss_pred CCCEEEE-e--CCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506 181 LADSIFL-D--LPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 181 ~~D~v~~-~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
..++++- + ..-....++.+.+ ++...++.+||-
T Consensus 99 ~~~~~vgLHaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 99 PPDILVGLHACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred CCeEEEEeecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 4566552 2 2222335555554 777777788875
No 280
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.32 E-value=7.7e-06 Score=65.98 Aligned_cols=100 Identities=22% Similarity=0.202 Sum_probs=74.3
Q ss_pred cHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC
Q 026506 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (237)
Q Consensus 96 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 175 (237)
.+..+++.+++.+++.|+|+|+|+|.++..++... .+++++|+++.+.+..++.+. ...+++++.+|+.+...+
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence 33457888888899999999999999999999884 799999999999999998754 234499999999874443
Q ss_pred CCCCCCCCEEEEeCCChh--chHHHHHh
Q 026506 176 DEFSGLADSIFLDLPQPW--LAIPSAKK 201 (237)
Q Consensus 176 ~~~~~~~D~v~~~~~~~~--~~l~~~~~ 201 (237)
.........|+.+.|-.. ..+.++..
T Consensus 92 ~~~~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp GHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred HhhcCCceEEEEEecccchHHHHHHHhh
Confidence 211134567788887432 35555555
No 281
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=98.31 E-value=8e-06 Score=67.96 Aligned_cols=103 Identities=23% Similarity=0.256 Sum_probs=66.7
Q ss_pred hcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
...+.++++||..|+|. |..+.++++..+ .++++++.+++..+.+++ .+.+..+.....+.. ..........
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~~~~~ 232 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPK-DKKAAGLGGG 232 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHH-HHHHHhcCCC
Confidence 34578889999988876 778888888763 569999999998888765 354321111111110 0000111256
Q ss_pred CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+|+++.... ....++.+.+.|+++|+++.++
T Consensus 233 ~D~vid~~g-~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 233 FDVIFDFVG-TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ceEEEECCC-CHHHHHHHHHHhhcCCEEEEEC
Confidence 998765443 2347889999999999998775
No 282
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=98.30 E-value=2e-05 Score=65.78 Aligned_cols=180 Identities=21% Similarity=0.275 Sum_probs=98.7
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceE--EeccCcEE-EEECCCHHHHhhhcCC---
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV--FSNKGGFV-YLLAPTPELWTLVLSH--- 87 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~--~~~~~~~~-~~~~~~~~~~~~~~~~--- 87 (237)
..|++||+|......+ |+.|.+|..|...+|.-.. ..+... ....|.+. +...+... ...++.
T Consensus 73 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~v~v~~~~--~~~iP~~~~ 141 (339)
T cd08232 73 TGLAPGQRVAVNPSRP--------CGTCDYCRAGRPNLCLNMR-FLGSAMRFPHVQGGFREYLVVDASQ--CVPLPDGLS 141 (339)
T ss_pred CcCCCCCEEEEccCCc--------CCCChHHhCcCcccCcccc-ceeeccccCCCCCceeeEEEechHH--eEECcCCCC
Confidence 4588999999877666 7888888877766665210 000000 00123333 33333211 111111
Q ss_pred --cccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 88 --RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 88 --~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
.+....+...+ ..+..+...++++||..|+|. |..+.++++..+ ..++++++.+++..+.+++ .+.+..+.
T Consensus 142 ~~~aa~~~~~~~a~~~l~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~~vi~ 216 (339)
T cd08232 142 LRRAALAEPLAVALHAVNRAGDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGADETVN 216 (339)
T ss_pred HHHhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCCEEEc
Confidence 11111111111 123334434889999998876 777777888763 2378999988888876655 34332122
Q ss_pred EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
....+... ... ..+++|+++...... ..++.+.+.|+++|+++.++
T Consensus 217 ~~~~~~~~--~~~-~~~~vd~vld~~g~~-~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 217 LARDPLAA--YAA-DKGDFDVVFEASGAP-AALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCchhhhh--hhc-cCCCccEEEECCCCH-HHHHHHHHHHhcCCEEEEEe
Confidence 11111111 111 114599977654432 36888999999999999775
No 283
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.29 E-value=1.1e-06 Score=67.60 Aligned_cols=99 Identities=19% Similarity=0.163 Sum_probs=66.0
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
...+.||.|+|.|..+..++... ..+|..+|..+.+++.|++.+... .....++....+.+...+. ++||+|.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~---~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEE---GKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----T---T-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCC---CcEeEEEe
Confidence 45699999999999998775443 478999999999999999875431 1233456666554322222 68999987
Q ss_pred eCC-------ChhchHHHHHhcccCCCEEEEE
Q 026506 188 DLP-------QPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 188 ~~~-------~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
-.- +..++|+++...|+|+|.+++=
T Consensus 129 QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 129 QWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp ES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 432 2246899999999999999843
No 284
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.27 E-value=6.8e-05 Score=58.64 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=61.1
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
-.|.+||-+|-.--.. ++++ ..+...+|+++|+++..++..++.++..|++ ++....|+. .++|+...+.||+++
T Consensus 43 L~gk~il~lGDDDLtS-lA~a-l~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR-~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTS-LALA-LTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLR-DPLPEELRGKFDVFF 117 (243)
T ss_dssp STT-EEEEES-TT-HH-HHHH-HHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TT-S---TTTSS-BSEEE
T ss_pred ccCCEEEEEcCCcHHH-HHHH-hhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEeccc-ccCCHHHhcCCCEEE
Confidence 4588999998665322 2222 2234589999999999999999999999975 999999998 677776678999999
Q ss_pred EeCCChh----chHHHHHhcccCCC-EEE
Q 026506 187 LDLPQPW----LAIPSAKKMLKQDG-ILC 210 (237)
Q Consensus 187 ~~~~~~~----~~l~~~~~~L~~gG-~l~ 210 (237)
.|+|... .++.+....||..| ..+
T Consensus 118 TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy 146 (243)
T PF01861_consen 118 TDPPYTPEGLKLFLSRGIEALKGEGCAGY 146 (243)
T ss_dssp E---SSHHHHHHHHHHHHHTB-STT-EEE
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCceEE
Confidence 9998664 46888899998666 443
No 285
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.26 E-value=5.9e-06 Score=66.26 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=68.8
Q ss_pred CCEEEEEccCccH----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHH-----cCC-----------------
Q 026506 109 GCLVLESGTGSGS----LTTSLARAVA----PTGHVYTFDFHEQRAASAREDFER-----TGV----------------- 158 (237)
Q Consensus 109 ~~~vldiG~G~G~----~~~~~~~~~~----~~~~v~~vD~~~~~~~~a~~~~~~-----~~~----------------- 158 (237)
.-+|+-.||++|- +++.+.+..+ ...+|+|+|+|...++.|+.-.-. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999993 3444445543 247899999999999998762100 011
Q ss_pred ------CCcEEEEEccccCCCCCCCCCCCCCEEEE-------eCCChhchHHHHHhcccCCCEEE
Q 026506 159 ------SSFVTVGVRDIQGQGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILC 210 (237)
Q Consensus 159 ------~~~i~~~~~d~~~~~~~~~~~~~~D~v~~-------~~~~~~~~l~~~~~~L~~gG~l~ 210 (237)
...+.+...|.....+.. +.||+||+ |.+....+++..+..|+|||.|+
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~---~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lf 238 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFL---GKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLF 238 (268)
T ss_pred EEChHHhcccEEeecCCCCCcccc---CCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEE
Confidence 123556667776544222 77999986 34455578999999999999998
No 286
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=98.25 E-value=1.9e-05 Score=67.06 Aligned_cols=185 Identities=18% Similarity=0.151 Sum_probs=98.7
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCC-----CCce-EEeccCcEE-EEECCCHHHHhhhcC
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP-----FGSM-VFSNKGGFV-YLLAPTPELWTLVLS 86 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~g~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 86 (237)
..+++||||+.....+ ||.|..|+.|....|...... ++.. .....|.+. |...|..+.+...++
T Consensus 73 ~~~~~Gd~V~~~~~~~--------~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP 144 (375)
T cd08282 73 ESLKVGDRVVVPFNVA--------CGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLP 144 (375)
T ss_pred CcCCCCCEEEEeCCCC--------CCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECC
Confidence 4589999999887666 788888887766555421100 0100 000112222 233332110111111
Q ss_pred C----c-----ccccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026506 87 H----R-----TQILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155 (237)
Q Consensus 87 ~----~-----~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 155 (237)
. . .....+...+. .+......++++||..|+|. |..+.++++..+ ..+++++|.+++..+.+++
T Consensus 145 ~~~~~~~~~~~a~~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G-~~~vi~~~~~~~~~~~~~~---- 219 (375)
T cd08282 145 DRDGAKEKDDYLMLSDIFPTGWHGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRG-ASRVYVVDHVPERLDLAES---- 219 (375)
T ss_pred CCCChhhhhheeeecchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----
Confidence 1 0 11111111111 23455678899999998887 777778887763 2478889999988887775
Q ss_pred cCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh----------hchHHHHHhcccCCCEEEEEe
Q 026506 156 TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 156 ~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+... +.....+..+ .+.....+.+|+++...... ...+..+.+.|+++|+++.++
T Consensus 220 ~g~~~-v~~~~~~~~~-~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 220 IGAIP-IDFSDGDPVE-QILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred cCCeE-eccCcccHHH-HHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 34311 2111111111 01111114689977654322 125888999999999997554
No 287
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=98.24 E-value=1.7e-05 Score=65.96 Aligned_cols=107 Identities=20% Similarity=0.147 Sum_probs=72.6
Q ss_pred HhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
...+.++|++||..|+.. |.+++++++.++. .++++-.+++..+.+++ .|.+..+++...|+.+.......+
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGG 209 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCC
Confidence 345688899999998544 7888999999743 55566666666666665 577665666666665421111112
Q ss_pred CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
.++|+|+-.... . .+.+..+.|+++|+++.+....
T Consensus 210 ~gvDvv~D~vG~-~-~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 210 KGVDVVLDTVGG-D-TFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCceEEEECCCH-H-HHHHHHHHhccCCEEEEEecCC
Confidence 369997654443 2 6788999999999999886543
No 288
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.23 E-value=2.8e-05 Score=63.11 Aligned_cols=116 Identities=15% Similarity=0.029 Sum_probs=74.0
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
....+|||+|+|+|..+.++...++...+++.+|.|+.+++.++..+....... ......+......+. ...|+|+
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~---~~~DLvi 107 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR-NAEWRRVLYRDFLPF---PPDDLVI 107 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc-cchhhhhhhcccccC---CCCcEEE
Confidence 345799999999998777666666545789999999999999988765432111 111111111111111 2349987
Q ss_pred Ee-----CCC--hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506 187 LD-----LPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (237)
Q Consensus 187 ~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 228 (237)
.. .+. ..++++++++.+++ .|+++.|.....-+.+..+|+
T Consensus 108 ~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~ 154 (274)
T PF09243_consen 108 ASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARD 154 (274)
T ss_pred EehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHH
Confidence 53 222 23466667666665 888898888777666666666
No 289
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=98.22 E-value=1.7e-05 Score=66.15 Aligned_cols=104 Identities=21% Similarity=0.258 Sum_probs=67.4
Q ss_pred HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CCC
Q 026506 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFS 179 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~ 179 (237)
....+.++++||..|+|. |..++++++..+ .+++++..+++..+.+++ .+.+..+.....++.+ .+.. ..+
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~-~l~~~~~~ 225 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARE----LGADDTINVGDEDVAA-RLRELTDG 225 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHH-HHHHHhCC
Confidence 455678899999998776 777788888863 678888888888877755 3433322222222111 1100 011
Q ss_pred CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..+|+++..... ...+..+.+.|+++|+++.++
T Consensus 226 ~~vd~vld~~g~-~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 226 EGADVVIDATGN-PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCCEEEECCCC-HHHHHHHHHHHhcCCEEEEEc
Confidence 459997765433 236788899999999998765
No 290
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.22 E-value=8.4e-06 Score=65.06 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=98.7
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccccC--CCCCCCCCC
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQG--QGFPDEFSG 180 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~--~~~~~~~~~ 180 (237)
....+++|.+|.|-|+.....+.+ ..-.++..+|++...++..++.+... |. ..++.+..+|... ..... +
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~---~ 194 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE---N 194 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc---C
Confidence 345689999999999998887776 34478999999999999999887653 32 3458888888765 22223 7
Q ss_pred CCCEEEEeCCChh---------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh----cCccccccC
Q 026506 181 LADSIFLDLPQPW---------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL----NFTGKESCI 237 (237)
Q Consensus 181 ~~D~v~~~~~~~~---------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~----~f~~v~~~~ 237 (237)
.||+|+.+..++. .+++.+.+.||++|+++..+-|.....+..+.+++ .|..++.+|
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~ 264 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAI 264 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccceee
Confidence 8999998876552 47888999999999999999888887788777777 277766543
No 291
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=98.22 E-value=2.3e-05 Score=65.52 Aligned_cols=178 Identities=20% Similarity=0.220 Sum_probs=95.2
Q ss_pred CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc-----
Q 026506 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----- 88 (237)
Q Consensus 15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----- 88 (237)
.+++||+|......+ ||.|+.|+.|.-+.|+-.+. .| ....|.+. +...+... ...++..
T Consensus 78 ~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~---~~~~g~~~~~v~v~~~~--~~~lP~~~~~~~ 143 (341)
T cd05281 78 RVKVGDYVSAETHIV--------CGKCYQCRTGNYHVCQNTKI-LG---VDTDGCFAEYVVVPEEN--LWKNDKDIPPEI 143 (341)
T ss_pred CCCCCCEEEECCccC--------CCCChHHHCcCcccCcccce-Ee---ccCCCcceEEEEechHH--cEECcCCCCHHH
Confidence 478999998865555 78888887666555531110 00 01122222 33333211 1111211
Q ss_pred ccccccccHHHHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506 89 TQILYIADISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (237)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~ 167 (237)
.....+...+.........++.+||..|+|. |..+.++++..+ ..++++++.+++..+.+++ .+.+..+.....
T Consensus 144 a~~~~~~~~a~~~~~~~~~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~ 218 (341)
T cd05281 144 ASIQEPLGNAVHTVLAGDVSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKK----MGADVVINPREE 218 (341)
T ss_pred hhhhhHHHHHHHHHHhcCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCcceeeCcccc
Confidence 1111111111111113456889999988776 777777888763 2368888878877776665 354321222222
Q ss_pred cccC-CCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 168 DIQG-QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 168 d~~~-~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++.. .... .++++|+++...... .....+.+.|+++|+++.++.
T Consensus 219 ~~~~~~~~~--~~~~vd~vld~~g~~-~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 219 DVVEVKSVT--DGTGVDVVLEMSGNP-KAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred cHHHHHHHc--CCCCCCEEEECCCCH-HHHHHHHHHhccCCEEEEEcc
Confidence 2210 0011 114699977655433 367888999999999987753
No 292
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=98.21 E-value=1.9e-05 Score=67.51 Aligned_cols=179 Identities=19% Similarity=0.250 Sum_probs=97.4
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 88 (237)
..+++||+|+...... |+.|.+|..|...+|.. ...+|.. ...|++. |...|... ...++..
T Consensus 101 ~~~~~Gd~V~~~~~~~--------~~~~~~c~~~~~~~~~~-~~~~g~~--~~~g~~a~y~~v~~~~--l~~iP~~l~~~ 167 (393)
T cd08246 101 KNWKVGDEVVVHCSVW--------DGNDPERAGGDPMFDPS-QRIWGYE--TNYGSFAQFALVQATQ--LMPKPKHLSWE 167 (393)
T ss_pred CcCCCCCEEEEecccc--------ccCcccccccccccccc-ccccccc--CCCCcceeEEEechHH--eEECCCCCCHH
Confidence 3588999999876555 67777787776666642 1112211 1224443 33333221 1111111
Q ss_pred --ccccccccHHH-HHH-h--cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026506 89 --TQILYIADISF-VIM-Y--LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS 160 (237)
Q Consensus 89 --~~~~~~~~~~~-~~~-~--~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 160 (237)
.....+...+. .+. . ..+.++++||..|+ |+ |..+..+++..+ .++++++.+++..+.+++ .|...
T Consensus 168 ~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~----~G~~~ 241 (393)
T cd08246 168 EAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRA----LGAEG 241 (393)
T ss_pred HHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH----cCCCE
Confidence 01111111111 111 1 45788999999997 55 777777887763 567788888998888876 35332
Q ss_pred cEEEEEccc---------------------cCCCCCCCCC-C-CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 161 FVTVGVRDI---------------------QGQGFPDEFS-G-LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 161 ~i~~~~~d~---------------------~~~~~~~~~~-~-~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.++....+. ....+..... . ++|+++.... . ..+..+.+.++++|+++.++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g-~-~~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 242 VINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPG-R-ATFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred EEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCc-h-HhHHHHHHHhccCCEEEEEc
Confidence 122110000 0000000011 2 6898774433 3 46888999999999999775
No 293
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=98.21 E-value=2.3e-05 Score=65.56 Aligned_cols=184 Identities=20% Similarity=0.177 Sum_probs=96.4
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCce-EEeccCcEE-EEECCCHHHHhhhcCC----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSM-VFSNKGGFV-YLLAPTPELWTLVLSH---- 87 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-~~~~~~~~~-~~~~~~~~~~~~~~~~---- 87 (237)
..+++||+|......+ |+.|.+|+.|....|.-.+. +|.. .....|.+. +...+....+....+.
T Consensus 73 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~ 143 (344)
T cd08284 73 RTLKVGDRVVSPFTIA--------CGECFYCRRGQSGRCAKGGL-FGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSD 143 (344)
T ss_pred cccCCCCEEEEcccCC--------CCCChHHhCcCcccCCCCcc-ccccccCCCCCceeEEEEcccccCceEECCCCCCH
Confidence 3588999999877666 78888887776555532111 1000 000112222 2222211001011110
Q ss_pred --cccccccccHH-HHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 88 --RTQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 88 --~~~~~~~~~~~-~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
..........+ ..+......++.+||..|+|. |..+..+++..+ ..++++++.+++..+.+++ .|... +.
T Consensus 144 ~~a~~l~~~~~ta~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~-~~ 217 (344)
T cd08284 144 EAALLLGDILPTGYFGAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLG-AARVFAVDPVPERLERAAA----LGAEP-IN 217 (344)
T ss_pred HHhhhhcCchHHHHhhhHhcCCccCCEEEEECCcHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----hCCeE-Ee
Confidence 00111111111 123345677899999998776 667777777753 2478888888877776655 35321 21
Q ss_pred EEEccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 164 VGVRDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 164 ~~~~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
....++.. .+.. ..+.++|+++..... ...+..+.+.|+++|+++.++.
T Consensus 218 ~~~~~~~~-~l~~~~~~~~~dvvid~~~~-~~~~~~~~~~l~~~g~~v~~g~ 267 (344)
T cd08284 218 FEDAEPVE-RVREATEGRGADVVLEAVGG-AAALDLAFDLVRPGGVISSVGV 267 (344)
T ss_pred cCCcCHHH-HHHHHhCCCCCCEEEECCCC-HHHHHHHHHhcccCCEEEEECc
Confidence 11111111 0100 111469987755443 3478889999999999987753
No 294
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=98.21 E-value=9.1e-06 Score=67.83 Aligned_cols=178 Identities=22% Similarity=0.275 Sum_probs=97.2
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 88 (237)
..+++||||+...... |+.|.+|+.|..++++... ..|. ...|.+. +...+.. +....+..
T Consensus 77 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~---~~~g~~~~~~~v~~~--~~~~~P~~ls~~ 142 (340)
T cd05284 77 DGLKEGDPVVVHPPWG--------CGTCRYCRRGEENYCENAR-FPGI---GTDGGFAEYLLVPSR--RLVKLPRGLDPV 142 (340)
T ss_pred CcCcCCCEEEEcCCCC--------CCCChHHhCcCcccCCCCc-ccCc---cCCCcceeeEEecHH--HeEECCCCCCHH
Confidence 4588999999877555 7778888888766654211 1111 1122222 2222211 11111111
Q ss_pred -cccccc-ccHHH-HHHhc--CCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 026506 89 -TQILYI-ADISF-VIMYL--ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (237)
Q Consensus 89 -~~~~~~-~~~~~-~~~~~--~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i 162 (237)
...+.. ...+. .+... ...++++||..|+|+ |..+.++++..+. .++++++.+++..+.+++ .+.+..+
T Consensus 143 ~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~~~ 217 (340)
T cd05284 143 EAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSEEALKLAER----LGADHVL 217 (340)
T ss_pred HhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHH----hCCcEEE
Confidence 111111 11111 22222 467789999999877 6667777777642 678888888887777654 4543211
Q ss_pred EEEEccccCCCCCC-CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 163 TVGVRDIQGQGFPD-EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 163 ~~~~~d~~~~~~~~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
... .++. ..+.. ..+..+|+++...+.. ..++.+.+.|+++|+++.++
T Consensus 218 ~~~-~~~~-~~i~~~~~~~~~dvvld~~g~~-~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 218 NAS-DDVV-EEVRELTGGRGADAVIDFVGSD-ETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred cCC-ccHH-HHHHHHhCCCCCCEEEEcCCCH-HHHHHHHHHhhcCCEEEEEc
Confidence 111 1111 11110 0114699987665543 36888899999999998775
No 295
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=98.20 E-value=1.3e-05 Score=67.11 Aligned_cols=180 Identities=19% Similarity=0.195 Sum_probs=100.0
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCC-----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSH----- 87 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 87 (237)
..+++||+|....-.+ ||+|.+|..|..+.|+-. ...+. ...|.+. +...+....+...++.
T Consensus 74 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~---~~~g~~~~~~~v~~~~~~~~~iP~~~~~~ 141 (345)
T cd08260 74 SRWRVGDRVTVPFVLG--------CGTCPYCRAGDSNVCEHQ-VQPGF---THPGSFAEYVAVPRADVNLVRLPDDVDFV 141 (345)
T ss_pred ccCCCCCEEEECCCCC--------CCCCccccCcCcccCCCC-ccccc---CCCCcceeEEEcccccCceEECCCCCCHH
Confidence 4589999998854334 888999988887777631 11111 0112222 2222221001111111
Q ss_pred -cccccccccHHH--HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 88 -RTQILYIADISF--VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 88 -~~~~~~~~~~~~--~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
......+...+. +.......++.+|+..|+|. |..+.++++.. ..++++++.+++..+.+++ .|++..+.
T Consensus 142 ~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~ 215 (345)
T cd08260 142 TAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVN 215 (345)
T ss_pred HhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEc
Confidence 111111111111 22344577889999999876 77777778876 3578999888888887754 45533222
Q ss_pred EEE-ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 164 VGV-RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 164 ~~~-~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
... .+... .+.....+.+|+++..... ...+....+.|+++|+++.++
T Consensus 216 ~~~~~~~~~-~~~~~~~~~~d~vi~~~g~-~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 216 ASEVEDVAA-AVRDLTGGGAHVSVDALGI-PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred cccchhHHH-HHHHHhCCCCCEEEEcCCC-HHHHHHHHHHhhcCCEEEEeC
Confidence 222 22211 0110111369997755443 336788899999999988765
No 296
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.20 E-value=1.5e-06 Score=66.73 Aligned_cols=100 Identities=19% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCCEEEEEccCccH----HHHHHHHHhC---C-CcEEEEEeCCHHHHHHHHHHH--------------HHc-----C---
Q 026506 108 PGCLVLESGTGSGS----LTTSLARAVA---P-TGHVYTFDFHEQRAASAREDF--------------ERT-----G--- 157 (237)
Q Consensus 108 ~~~~vldiG~G~G~----~~~~~~~~~~---~-~~~v~~vD~~~~~~~~a~~~~--------------~~~-----~--- 157 (237)
..-+|+..||++|. +++.+..... + ..+++|+|+|+.+++.|++-. .+. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45799999999995 2333333211 1 358999999999999987731 100 1
Q ss_pred -----CCCcEEEEEccccCCCCCCCCCCCCCEEEEe-------CCChhchHHHHHhcccCCCEEE
Q 026506 158 -----VSSFVTVGVRDIQGQGFPDEFSGLADSIFLD-------LPQPWLAIPSAKKMLKQDGILC 210 (237)
Q Consensus 158 -----~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~-------~~~~~~~l~~~~~~L~~gG~l~ 210 (237)
+.+.+.+...|..+...+. +.||+|++- ......+++.+.+.|+|||.|+
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~---~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~ 172 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPF---GRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLF 172 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEE
T ss_pred eEChHHcCceEEEecccCCCCccc---CCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEE
Confidence 0135788888888512222 789999873 2233568999999999999998
No 297
>PRK10742 putative methyltransferase; Provisional
Probab=98.19 E-value=1.2e-05 Score=63.38 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=68.7
Q ss_pred HHHhcCCCCCC--EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEEccc
Q 026506 100 VIMYLELVPGC--LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT------G--VSSFVTVGVRDI 169 (237)
Q Consensus 100 ~~~~~~~~~~~--~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~--~~~~i~~~~~d~ 169 (237)
+++..++++|. +|||+.+|+|..+..++.. .++|+++|.++......++++.+. + +..++++..+|.
T Consensus 78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred HHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 66777888888 9999999999999988877 356999999999999999988764 2 124588888888
Q ss_pred cCCCCCCCCCCCCCEEEEeCCCh
Q 026506 170 QGQGFPDEFSGLADSIFLDLPQP 192 (237)
Q Consensus 170 ~~~~~~~~~~~~~D~v~~~~~~~ 192 (237)
.+. +.. ....||+|++|++-+
T Consensus 155 ~~~-L~~-~~~~fDVVYlDPMfp 175 (250)
T PRK10742 155 LTA-LTD-ITPRPQVVYLDPMFP 175 (250)
T ss_pred HHH-Hhh-CCCCCcEEEECCCCC
Confidence 751 111 224799999998744
No 298
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=98.18 E-value=8.7e-05 Score=61.40 Aligned_cols=169 Identities=18% Similarity=0.179 Sum_probs=95.8
Q ss_pred CCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc-----c
Q 026506 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR-----T 89 (237)
Q Consensus 16 ~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~ 89 (237)
+++||||......+ |+.|.+|..|....+. +.. ...+....|.+. +...+.. +...++.. .
T Consensus 69 ~~~G~~V~~~~~~~--------~~~~~~~~~~~~~~~~--~~~-~~~~~~~~g~~~~~~~v~~~--~~~~lP~~~~~~~a 135 (319)
T cd08242 69 ELVGKRVVGEINIA--------CGRCEYCRRGLYTHCP--NRT-VLGIVDRDGAFAEYLTLPLE--NLHVVPDLVPDEQA 135 (319)
T ss_pred CCCCCeEEECCCcC--------CCCChhhhCcCcccCC--CCc-ccCccCCCCceEEEEEechH--HeEECcCCCCHHHh
Confidence 68999998876555 7777788777654433 110 000001123332 3333321 11111111 1
Q ss_pred cccccccHHH-HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506 90 QILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (237)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~ 167 (237)
..+.+..... ++...+..++.+||..|+|. |..+.++++..+ .++++++.+++..+.+++ .|....+..
T Consensus 136 a~~~~~~~~~~~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~~~~~~--- 206 (319)
T cd08242 136 VFAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARR----LGVETVLPD--- 206 (319)
T ss_pred hhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----cCCcEEeCc---
Confidence 1111111111 33455678899999998877 777777787763 468999999998888876 354321111
Q ss_pred cccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 168 DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 168 d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
... ... ..+|+++..... ...++.+.+.|+++|+++...
T Consensus 207 --~~~-~~~---~~~d~vid~~g~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 207 --EAE-SEG---GGFDVVVEATGS-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred --ccc-ccC---CCCCEEEECCCC-hHHHHHHHHHhhcCCEEEEEc
Confidence 111 121 569997755433 336788899999999998643
No 299
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.18 E-value=1.2e-05 Score=60.67 Aligned_cols=118 Identities=17% Similarity=0.261 Sum_probs=80.9
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-------CCCcEEEEEccccCCCCCCC-CC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-------VSSFVTVGVRDIQGQGFPDE-FS 179 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~i~~~~~d~~~~~~~~~-~~ 179 (237)
..-.+.|||||-|++.+.++... |+..+.+.|+.....+..++++..+. ..+ +.+...+... -++.. ..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk-~lpn~f~k 136 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMK-FLPNFFEK 136 (249)
T ss_pred ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchh-hccchhhh
Confidence 34578999999999999999986 67889999998888888887776554 333 5566555543 11211 11
Q ss_pred CCCCEEEEeCCChh-------------chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506 180 GLADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (237)
Q Consensus 180 ~~~D~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 228 (237)
++.+-.|...|++. ..+.+..-+|++||.++.+....+.-..+.+.+.+
T Consensus 137 gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~ 198 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEE 198 (249)
T ss_pred cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHh
Confidence 44455555444431 35777788999999999777766655555556655
No 300
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=98.17 E-value=1.3e-05 Score=67.77 Aligned_cols=103 Identities=21% Similarity=0.257 Sum_probs=65.0
Q ss_pred CCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506 105 ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD 183 (237)
Q Consensus 105 ~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 183 (237)
.+.++.+||..|+|. |..+.++++..+ ...+++++.+++..+.+++ .+....+.....+..........+..+|
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHhCCCCCC
Confidence 457889999888776 777777887763 2448889888888877754 3543212222112110000001114699
Q ss_pred EEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 184 SIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 184 ~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+|+...+.. ..+..+.+.|+++|+++.++
T Consensus 259 ~vld~vg~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 259 VVVEALGKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEEeCCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 988655543 36788899999999998775
No 301
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=98.16 E-value=2.2e-05 Score=65.60 Aligned_cols=181 Identities=19% Similarity=0.121 Sum_probs=96.7
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 88 (237)
..+++||+|....... |+.|..|..+..++|.-. .+.. ....|.+. +...|.. +...++..
T Consensus 77 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~---~~~~-~~~~g~~~~~~~v~~~--~~~~iP~~l~~~ 142 (341)
T PRK05396 77 TGFKVGDRVSGEGHIV--------CGHCRNCRAGRRHLCRNT---KGVG-VNRPGAFAEYLVIPAF--NVWKIPDDIPDD 142 (341)
T ss_pred CcCCCCCEEEECCCCC--------CCCChhhhCcChhhCCCc---ceee-ecCCCcceeeEEechH--HeEECcCCCCHH
Confidence 4578999998876555 677778877776666421 1110 11123332 3333321 11111111
Q ss_pred -ccccccccHHHHHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 026506 89 -TQILYIADISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (237)
Q Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~ 166 (237)
...+.+.............++++|+..|+|. |..+.++++..+ ..++++++.+++..+.+++ .|.+..+....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~ 217 (341)
T PRK05396 143 LAAIFDPFGNAVHTALSFDLVGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAK 217 (341)
T ss_pred HhHhhhHHHHHHHHHHcCCCCCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCcc
Confidence 1111111111111112235788999988877 777778888763 2468888888887777665 35433222222
Q ss_pred ccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 167 RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 167 ~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.++.+.......+..+|+|+..... ...++.+.+.|+++|.++.++.
T Consensus 218 ~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 218 EDLRDVMAELGMTEGFDVGLEMSGA-PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred ccHHHHHHHhcCCCCCCEEEECCCC-HHHHHHHHHHHhcCCEEEEEec
Confidence 2221100000112568997754543 3378889999999999998864
No 302
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=6.7e-06 Score=61.81 Aligned_cols=101 Identities=26% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
.-.|.+|||+|+|+|..++..+.. ++..|++.|+.|...+.++-|.+.+++. +.+...|... +. ..||++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~~---~~~Dl~ 146 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---SP---PAFDLL 146 (218)
T ss_pred ccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---CC---cceeEE
Confidence 446899999999999998776665 4678999999999999999999988853 7788888763 33 679998
Q ss_pred EEe-----CCChhchHHHHHhcccCCCE-EEEEeCCHH
Q 026506 186 FLD-----LPQPWLAIPSAKKMLKQDGI-LCSFSPCIE 217 (237)
Q Consensus 186 ~~~-----~~~~~~~l~~~~~~L~~gG~-l~~~~~~~~ 217 (237)
+.. ......++. ..+.++..|. +++..|...
T Consensus 147 LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 147 LAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred EeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 752 233334555 6666666664 555555543
No 303
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=98.12 E-value=1.9e-05 Score=66.23 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=64.4
Q ss_pred CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
..++++||..|+|+ |..+.++++..+ ..++++++.+++..+.+++ .|.+..+.....+..+ .+.....+++|+
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~~~~d~ 246 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGADVVVNGSDPDAAK-RIIKAAGGGVDA 246 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCcEEecCCCccHHH-HHHHHhCCCCcE
Confidence 34788999998877 777788888864 3478899988888887755 3542211111111110 011111136899
Q ss_pred EEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
++...+.. ..+..+.+.|+++|+++.++
T Consensus 247 vid~~g~~-~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 247 VIDFVNNS-ATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred EEECCCCH-HHHHHHHHHhhcCCeEEEEC
Confidence 77544433 47899999999999998764
No 304
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.11 E-value=1.3e-05 Score=67.66 Aligned_cols=109 Identities=21% Similarity=0.180 Sum_probs=80.2
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
.+-++||.=+|+|.=++..+..+.+..+|++.|+|+++++.+++|++.+++.. ++++...|+.. .+. .....||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~-ll~-~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV-LLY-SRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH-HHC-HSTT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH-Hhh-hccccCCEEE
Confidence 45699999999999999998887666799999999999999999999999887 68898888864 221 1127899998
Q ss_pred EeC-CChhchHHHHHhcccCCCEEEEEeCCHHH
Q 026506 187 LDL-PQPWLAIPSAKKMLKQDGILCSFSPCIEQ 218 (237)
Q Consensus 187 ~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 218 (237)
+|+ +.+..++..+.+.++.||.|.+-++-...
T Consensus 127 lDPfGSp~pfldsA~~~v~~gGll~vTaTD~a~ 159 (377)
T PF02005_consen 127 LDPFGSPAPFLDSALQAVKDGGLLCVTATDTAV 159 (377)
T ss_dssp E--SS--HHHHHHHHHHEEEEEEEEEEE--HHH
T ss_pred eCCCCCccHhHHHHHHHhhcCCEEEEecccccc
Confidence 887 45557999999999999999977765433
No 305
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.10 E-value=4.7e-05 Score=66.73 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=94.1
Q ss_pred ccccccccHHH-HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 026506 89 TQILYIADISF-VIMYLELVPGCLVLESGTGSGSLTTSLARAVAP---TGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (237)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~ 164 (237)
.+...|..+.. +++.+.+.+..+|.|..||+|++.......+.. ...+++.|+++.....++.++-.+++...+..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 55666777664 677788888889999999999998888777642 26789999999999999999988887633566
Q ss_pred EEccccCCCCCC--CCCCCCCEEEEeCCCh------------------------------hchHHHHHhcccCCCEEEEE
Q 026506 165 GVRDIQGQGFPD--EFSGLADSIFLDLPQP------------------------------WLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 165 ~~~d~~~~~~~~--~~~~~~D~v~~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~ 212 (237)
..+|....+... ...+.||.|+.++|-. +..++.+...|+|||+..++
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 666665433321 1225699988876621 34688899999998877766
Q ss_pred eCC
Q 026506 213 SPC 215 (237)
Q Consensus 213 ~~~ 215 (237)
.|.
T Consensus 326 l~~ 328 (489)
T COG0286 326 LPD 328 (489)
T ss_pred ecC
Confidence 554
No 306
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=98.10 E-value=4.4e-05 Score=63.64 Aligned_cols=105 Identities=20% Similarity=0.295 Sum_probs=68.7
Q ss_pred HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCCC
Q 026506 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEF 178 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~ 178 (237)
+....+.++++||..|+|+ |..+.++++... ..++++++.+++..+.+++ .+.+..+.... .+.. ..+....
T Consensus 155 ~~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~v~~~~ 228 (338)
T PRK09422 155 IKVSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVA-KIIQEKT 228 (338)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHH-HHHHHhc
Confidence 3456788999999999876 777777777642 3579999999998888855 45433122111 1111 1111111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+++|.++.+.... ..++.+.+.|+++|+++.++
T Consensus 229 -~~~d~vi~~~~~~-~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 229 -GGAHAAVVTAVAK-AAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred -CCCcEEEEeCCCH-HHHHHHHHhccCCCEEEEEe
Confidence 3588767665543 47899999999999998765
No 307
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=98.05 E-value=5.4e-05 Score=62.81 Aligned_cols=177 Identities=19% Similarity=0.216 Sum_probs=95.8
Q ss_pred CCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----c
Q 026506 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----T 89 (237)
Q Consensus 15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~ 89 (237)
.+++||+|......+ ||.|..|..+..+.|...+. .|.. ..|.+. +...+... ....+.. .
T Consensus 78 ~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~g~~---~~g~~~~~~~~~~~~--~~~~p~~~~~~~ 143 (342)
T cd08266 78 NVKPGQRVVIYPGIS--------CGRCEYCLAGRENLCAQYGI-LGEH---VDGGYAEYVAVPARN--LLPIPDNLSFEE 143 (342)
T ss_pred CCCCCCEEEEccccc--------cccchhhccccccccccccc-cccc---cCcceeEEEEechHH--ceeCCCCCCHHH
Confidence 588999999887555 88888888887777763221 1111 122222 23333211 1111111 0
Q ss_pred ccccccc--HH--HHHHhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 90 QILYIAD--IS--FVIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 90 ~~~~~~~--~~--~~~~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
....+.. .+ .+.......++.+++..|++. |..+..++... ..+++.++.+++..+.++. .+....+.
T Consensus 144 a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~ 217 (342)
T cd08266 144 AAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVID 217 (342)
T ss_pred HHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEe
Confidence 0011111 11 122345677889999999864 55555566654 3578888988887776644 23322121
Q ss_pred EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
....+.............+|+++...+. ..+..+.+.++++|.++.++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~d~~i~~~g~--~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 218 YRKEDFVREVRELTGKRGVDVVVEHVGA--ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred cCChHHHHHHHHHhCCCCCcEEEECCcH--HHHHHHHHHhhcCCEEEEEe
Confidence 1111111000000011468998866554 35788889999999998765
No 308
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.04 E-value=9.6e-06 Score=65.99 Aligned_cols=112 Identities=24% Similarity=0.278 Sum_probs=86.8
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHH-------HHHHHHHHcC-CCCcEEEEEccccC
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAA-------SAREDFERTG-VSSFVTVGVRDIQG 171 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~-------~a~~~~~~~~-~~~~i~~~~~d~~~ 171 (237)
+...+.++||+.|+|-..|||++....+.. ++-|+|.|++-.++. ..+.|+++.| .+.-+.+..+|+..
T Consensus 200 ~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 200 MANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN 276 (421)
T ss_pred HhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccC
Confidence 455677899999999999999998777766 378999999877665 3577888888 34556788899886
Q ss_pred CCCCCCCCCCCCEEEEeCCCh--------------------------------------hchHHHHHhcccCCCEEEEEe
Q 026506 172 QGFPDEFSGLADSIFLDLPQP--------------------------------------WLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 172 ~~~~~~~~~~~D~v~~~~~~~--------------------------------------~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.++-. ...||.|++|+|-- ...+.-..+.|..||+++++-
T Consensus 277 ~~~rs--n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 277 PPLRS--NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred cchhh--cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 44433 25799999998710 135777899999999999998
Q ss_pred CCH
Q 026506 214 PCI 216 (237)
Q Consensus 214 ~~~ 216 (237)
|..
T Consensus 355 p~~ 357 (421)
T KOG2671|consen 355 PTI 357 (421)
T ss_pred Cch
Confidence 754
No 309
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.04 E-value=6.7e-05 Score=61.91 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=72.6
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCC-C-CCC-CC
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAP---TGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQ-G-FPD-EF 178 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~-~-~~~-~~ 178 (237)
+.++..++|+|||.|.-+..++..+.. ...++.+|+|.+.++.+.+++.....+. .+..+.+|+.+. . ++. ..
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 356779999999999998887776632 3679999999999999999887333333 244477888641 1 111 11
Q ss_pred CCCCCEEEE------eC--CChhchHHHHHh-cccCCCEEEEEe
Q 026506 179 SGLADSIFL------DL--PQPWLAIPSAKK-MLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~------~~--~~~~~~l~~~~~-~L~~gG~l~~~~ 213 (237)
.....+++. |. .....+|+++.+ .|+||+.+++-.
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 133555543 11 122357888988 999999988543
No 310
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.00 E-value=3.4e-05 Score=56.18 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=48.6
Q ss_pred EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 026506 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (237)
Q Consensus 111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~ 170 (237)
+++|+|||.|..+..++... +..+++++|.++.+.+.+++++..++..+ +.+....+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeee
Confidence 48999999999998888764 55689999999999999999998887765 777665554
No 311
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=98.00 E-value=0.00013 Score=60.66 Aligned_cols=100 Identities=24% Similarity=0.239 Sum_probs=65.6
Q ss_pred HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
......++.+||..|+|. |..+..+++..+ .++++++.+++..+.+++ .+....+.....+.. .. .. +
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~-~~---~ 224 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARK----LGADEVVDSGAELDE-QA-AA---G 224 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----hCCcEEeccCCcchH-Hh-cc---C
Confidence 345678899999999886 777777777753 578999999988877754 343221111111111 11 11 4
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+|+++...... ..+..+.+.|+++|+++.++
T Consensus 225 ~~d~vi~~~~~~-~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 225 GADVILVTVVSG-AAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CCCEEEECCCcH-HHHHHHHHhcccCCEEEEEC
Confidence 699977543332 37788899999999998775
No 312
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=97.99 E-value=0.00018 Score=60.11 Aligned_cols=101 Identities=21% Similarity=0.269 Sum_probs=67.3
Q ss_pred HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
..+.+.++.+++..|+|. |..+.++++..+ .++++++.+++..+.+++ .+.+..+.....+.. .....
T Consensus 163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~-----~~~~~ 231 (337)
T cd05283 163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALK----LGADEFIATKDPEAM-----KKAAG 231 (337)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----cCCcEEecCcchhhh-----hhccC
Confidence 445678899999998877 777777777753 579999998888887754 353321211111111 11125
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.+|+++...+.. ..++.+.+.|+++|+++.++.
T Consensus 232 ~~d~v~~~~g~~-~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 232 SLDLIIDTVSAS-HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred CceEEEECCCCc-chHHHHHHHhcCCCEEEEEec
Confidence 699988655543 357888999999999997763
No 313
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.99 E-value=3e-05 Score=58.28 Aligned_cols=105 Identities=26% Similarity=0.288 Sum_probs=65.1
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHH---------H-HHHHHHHHHcCCCCcEEEEEccc
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR---------A-ASAREDFERTGVSSFVTVGVRDI 169 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~---------~-~~a~~~~~~~~~~~~i~~~~~d~ 169 (237)
++...++++|++|+|+-.|.|+++..++...++.+.|+++-..+.. + ..+++. ...| .+....+.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~----~~aN-~e~~~~~~ 114 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP----VYAN-VEVIGKPL 114 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh----hhhh-hhhhCCcc
Confidence 4556678999999999999999999999999988889888543321 1 111111 1112 22222222
Q ss_pred cCCCCCCCCCCCCCEEE--------E----eCCChhchHHHHHhcccCCCEEEEEe
Q 026506 170 QGQGFPDEFSGLADSIF--------L----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 170 ~~~~~~~~~~~~~D~v~--------~----~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.... +. +..|++. . .......+...+++.|||||.+.+..
T Consensus 115 ~A~~-~p---q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 115 VALG-AP---QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccC-CC---CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 2111 11 2334432 2 12222357888999999999998774
No 314
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=97.99 E-value=6.3e-05 Score=59.03 Aligned_cols=105 Identities=21% Similarity=0.236 Sum_probs=76.8
Q ss_pred HHhcCCCCCCEEEEEcc--CccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 101 IMYLELVPGCLVLESGT--GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~--G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.+..+++||++||..-+ |.|.+..++++.. ..++++.-.+.+..+.|+++ |....|.....|+.+....-..
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTn 212 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITN 212 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccC
Confidence 34567999999997644 3367777788775 46788888888888888884 7766688888888763222222
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+.++|+++-.... ++++..+..||++|.++.++
T Consensus 213 gKGVd~vyDsvG~--dt~~~sl~~Lk~~G~mVSfG 245 (336)
T KOG1197|consen 213 GKGVDAVYDSVGK--DTFAKSLAALKPMGKMVSFG 245 (336)
T ss_pred CCCceeeeccccc--hhhHHHHHHhccCceEEEec
Confidence 3679997754443 37899999999999999774
No 315
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.98 E-value=0.00012 Score=64.14 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=68.7
Q ss_pred CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccccCCC----CCCC--
Q 026506 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQG----FPDE-- 177 (237)
Q Consensus 106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~~----~~~~-- 177 (237)
..++++|+.+|+|+ |..++..++.++ ..|+++|.++++++.+++ .|... .++....+..... ....
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeEEEeccccccccccchhhhcchhHH
Confidence 45799999999999 888888888874 379999999999998887 45431 0111111100000 0000
Q ss_pred -------C--CCCCCEEEEeCCCh----hch-HHHHHhcccCCCEEEEEeC
Q 026506 178 -------F--SGLADSIFLDLPQP----WLA-IPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 178 -------~--~~~~D~v~~~~~~~----~~~-l~~~~~~L~~gG~l~~~~~ 214 (237)
. ..++|+||.....+ ..+ .+++.+.+||||+++.++.
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 13699998765432 224 5999999999999997764
No 316
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=97.96 E-value=0.00011 Score=61.48 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=65.9
Q ss_pred HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCCCCCC
Q 026506 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEF 178 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~ 178 (237)
+......++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++ .+....+........+ .....
T Consensus 152 l~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~~~~~~~~~~-- 224 (343)
T cd08236 152 VRLAGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVARE----LGADDTINPKEEDVEKVRELTE-- 224 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEecCccccHHHHHHHhC--
Confidence 3456678899999998776 777778888763 2348888888877776644 3442212221111000 01111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+..+|+++..... ...+..+.+.|+++|+++.++
T Consensus 225 ~~~~d~vld~~g~-~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 225 GRGADLVIEAAGS-PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHHhhcCCEEEEEc
Confidence 1359997755433 337788899999999998775
No 317
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=97.96 E-value=7.8e-05 Score=61.80 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=94.0
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCcc---
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT--- 89 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 89 (237)
..+++||+|+.....+ |+.|.+|..|..+.|.... .++. ...|.+. +...+... ...++...
T Consensus 74 ~~~~~Gd~V~~~~~~~--------~~~c~~~~~~~~~~~~~~~-~~~~---~~~g~~~~~~~v~~~~--~~~~p~~~~~~ 139 (325)
T cd08264 74 KGVKKGDRVVVYNRVF--------DGTCDMCLSGNEMLCRNGG-IIGV---VSNGGYAEYIVVPEKN--LFKIPDSISDE 139 (325)
T ss_pred CCCCCCCEEEECCCcC--------CCCChhhcCCCccccCccc-eeec---cCCCceeeEEEcCHHH--ceeCCCCCCHH
Confidence 3589999999876444 8889999989888876321 1111 1123333 33333211 11111110
Q ss_pred -cccccc--cH-HHHHHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 90 -QILYIA--DI-SFVIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 90 -~~~~~~--~~-~~~~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
....+. .. ...+....++++++|+.+|+ |+ |..++.+++..+ .+++++.. .+.++ ..+.+..+.
T Consensus 140 ~~~~~~~~~~~a~~~l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G--~~v~~~~~----~~~~~----~~g~~~~~~ 209 (325)
T cd08264 140 LAASLPVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMG--AEVIAVSR----KDWLK----EFGADEVVD 209 (325)
T ss_pred HhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcC--CeEEEEeH----HHHHH----HhCCCeeec
Confidence 000010 01 11234467789999999997 66 777788888764 46777752 13332 245432122
Q ss_pred EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.. +.. ..+.... +.+|+|+..... ..+..+.+.|+++|+++.++.
T Consensus 210 ~~--~~~-~~l~~~~-~~~d~vl~~~g~--~~~~~~~~~l~~~g~~v~~g~ 254 (325)
T cd08264 210 YD--EVE-EKVKEIT-KMADVVINSLGS--SFWDLSLSVLGRGGRLVTFGT 254 (325)
T ss_pred ch--HHH-HHHHHHh-CCCCEEEECCCH--HHHHHHHHhhccCCEEEEEec
Confidence 11 111 1111111 458997754443 478999999999999997653
No 318
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.95 E-value=0.00011 Score=56.20 Aligned_cols=100 Identities=22% Similarity=0.265 Sum_probs=73.3
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCC
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLAD 183 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D 183 (237)
..+|.+||++|-|.|.....+.++ .+ .+-+.+|.+|+.++..++..... ..++.+..+-..+ ..+++ +.||
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d---~~FD 171 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPD---KHFD 171 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccc---cCcc
Confidence 377899999999999988777776 35 45566899999999998864322 1235555554432 34454 7799
Q ss_pred EEEEeCC-----ChhchHHHHHhcccCCCEEEEE
Q 026506 184 SIFLDLP-----QPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 184 ~v~~~~~-----~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
-|+.|.- +.+.+.+.+.++|||+|++-.+
T Consensus 172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 9998864 3456888999999999998654
No 319
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=97.94 E-value=0.00011 Score=61.04 Aligned_cols=173 Identities=15% Similarity=0.132 Sum_probs=97.8
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 88 (237)
..+++||+|+.....+ |+.|.+|..|..+.|.... .+|.. ..|.+. +...|. + +...++..
T Consensus 74 ~~~~~G~~V~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~---~~g~~~~~~~~~~-~-~~~~lp~~~~~~ 139 (334)
T PRK13771 74 KGFKPGDRVASLLYAP--------DGTCEYCRSGEEAYCKNRL-GYGEE---LDGFFAEYAKVKV-T-SLVKVPPNVSDE 139 (334)
T ss_pred ccCCCCCEEEECCCCC--------CcCChhhcCCCcccCcccc-ccccc---cCceeeeeeecch-h-ceEECCCCCCHH
Confidence 3578999999876445 8888889888877775321 12211 122222 222221 1 11111110
Q ss_pred -cc-ccccccHH-HHHHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 89 -TQ-ILYIADIS-FVIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 89 -~~-~~~~~~~~-~~~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
.. .......+ ..+..+...++++|+..|+ |. |..+.++++..+ .++++++.+++..+.+++. ...- +.
T Consensus 140 ~~a~l~~~~~~a~~~~~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~-~~~~----~~ 212 (334)
T PRK13771 140 GAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQVAKALG--AKVIAVTSSESKAKIVSKY-ADYV----IV 212 (334)
T ss_pred HhhcccchHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH-HHHh----cC
Confidence 00 01111111 1233447788999999998 44 778888888863 5788888888888887553 1111 11
Q ss_pred EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.. +.. ..+... +.+|+++..... ..+..+.+.|+++|+++.++.
T Consensus 213 ~~--~~~-~~v~~~--~~~d~~ld~~g~--~~~~~~~~~l~~~G~~v~~g~ 256 (334)
T PRK13771 213 GS--KFS-EEVKKI--GGADIVIETVGT--PTLEESLRSLNMGGKIIQIGN 256 (334)
T ss_pred ch--hHH-HHHHhc--CCCcEEEEcCCh--HHHHHHHHHHhcCCEEEEEec
Confidence 11 111 111111 258997755443 257888999999999987753
No 320
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=97.93 E-value=0.00022 Score=59.53 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=66.1
Q ss_pred HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC--C-CCCC
Q 026506 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--G-FPDE 177 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~-~~~~ 177 (237)
......++++||..|+|. |..+.++++..+ ...+++++.+++..+.+++ .+....+.....+..+. . ....
T Consensus 155 ~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~ 229 (341)
T cd08262 155 RRARLTPGEVALVIGCGPIGLAVIAALKARG-VGPIVASDFSPERRALALA----MGADIVVDPAADSPFAAWAAELARA 229 (341)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcEEEcCCCcCHHHHHHHHHHHh
Confidence 455678899999998766 667777787764 3458888988888887765 34322122111111000 0 0001
Q ss_pred CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+..+|+++..... ...+..+.+.++++|+++.++
T Consensus 230 ~~~~~d~vid~~g~-~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 230 GGPKPAVIFECVGA-PGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred CCCCCCEEEECCCC-HHHHHHHHHHhccCCEEEEEC
Confidence 12469997754433 236788899999999998765
No 321
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.92 E-value=2e-05 Score=60.74 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=70.9
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
....++||||+-|.+..++... +-.+++-+|.|-.|++.++..- ..++ ......+|-...++.+ .++|+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DEE~Ldf~e---ns~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDEEFLDFKE---NSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhccC-CCce--EEEEEecchhcccccc---cchhhhhh
Confidence 3458999999999999888765 3478999999999999887631 1121 1445666765555665 88999986
Q ss_pred eCCChh-----chHHHHHhcccCCCEEE
Q 026506 188 DLPQPW-----LAIPSAKKMLKQDGILC 210 (237)
Q Consensus 188 ~~~~~~-----~~l~~~~~~L~~gG~l~ 210 (237)
....+| ..+.++...|||.|.++
T Consensus 144 SlslHW~NdLPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 144 SLSLHWTNDLPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred hhhhhhhccCchHHHHHHHhcCCCccch
Confidence 554444 46889999999999987
No 322
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=97.90 E-value=0.00018 Score=59.69 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=65.3
Q ss_pred HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
...+++++.++|..|+|. |..+..+++..+ .++++++.+++..+.+++ .|.+..+ +... .+. .
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~-----~~~~--~~~---~ 224 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELARE----LGADWAG-----DSDD--LPP---E 224 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHH----hCCcEEe-----ccCc--cCC---C
Confidence 556788899999998887 666677777753 688888888887777754 3542211 1111 122 4
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+|+++...+.. ..++.+.+.|+++|+++.++
T Consensus 225 ~vD~vi~~~~~~-~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 225 PLDAAIIFAPVG-ALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred cccEEEEcCCcH-HHHHHHHHHhhcCCEEEEEc
Confidence 689877644433 47899999999999999765
No 323
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.88 E-value=3.7e-05 Score=64.44 Aligned_cols=105 Identities=22% Similarity=0.214 Sum_probs=84.6
Q ss_pred cCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCC
Q 026506 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD 183 (237)
Q Consensus 104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D 183 (237)
....++..++|+|||.|.....++.. ....+++++.++..+..+........+++...+...|+.+.++++ ..||
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed---n~fd 180 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED---NTFD 180 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc---cccC
Confidence 35678889999999999999888877 347899999999888877776666666666667888888766776 7788
Q ss_pred EEE-----EeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 184 SIF-----LDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 184 ~v~-----~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+. ...+..+..++++++.++|||..+.+.
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHH
Confidence 874 356788889999999999999998554
No 324
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.88 E-value=0.00033 Score=53.96 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=83.9
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
+.+..++|+||-.+++...+... ++...+++.|+++.-++.|.+++.++++..++++..+|.. ..+... ..+|+++
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl-~~l~~~--d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL-AVLELE--DEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc-cccCcc--CCcCEEE
Confidence 45666999999999999998887 4678899999999999999999999999888999999987 444431 4799987
Q ss_pred Ee-CCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506 187 LD-LPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (237)
Q Consensus 187 ~~-~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 228 (237)
+. ++.. .+.+++..+.|+.=-+++ +.|... ...+.++|..
T Consensus 91 IAGMGG~lI~~ILee~~~~l~~~~rlI-LQPn~~-~~~LR~~L~~ 133 (226)
T COG2384 91 IAGMGGTLIREILEEGKEKLKGVERLI-LQPNIH-TYELREWLSA 133 (226)
T ss_pred EeCCcHHHHHHHHHHhhhhhcCcceEE-ECCCCC-HHHHHHHHHh
Confidence 65 3433 245666666665443444 666542 2334444444
No 325
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.87 E-value=2.2e-05 Score=67.26 Aligned_cols=94 Identities=24% Similarity=0.325 Sum_probs=61.5
Q ss_pred CEEEEEccCccHHHHHHHHHhCCCcEEEEE-----eCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTF-----DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~v-----D~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
.++||+|||+|.++..++.+ .|+++ |..+..+++|.++ |+...+.+ .+. ...+++. +.||+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~-~~s-~rLPfp~---~~fDm 184 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALER----GVPAMIGV-LGS-QRLPFPS---NAFDM 184 (506)
T ss_pred EEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhc----Ccchhhhh-hcc-ccccCCc---cchhh
Confidence 37899999999999888775 23333 4445566777664 65442221 112 2266777 78999
Q ss_pred EEEe-CCCh-----hchHHHHHhcccCCCEEEEEeCCHH
Q 026506 185 IFLD-LPQP-----WLAIPSAKKMLKQDGILCSFSPCIE 217 (237)
Q Consensus 185 v~~~-~~~~-----~~~l~~~~~~L~~gG~l~~~~~~~~ 217 (237)
|-+. ...+ .-+|-++.|+|+|||.++..+|...
T Consensus 185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 7542 1112 2478889999999999997777544
No 326
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.86 E-value=4.7e-05 Score=54.74 Aligned_cols=76 Identities=28% Similarity=0.479 Sum_probs=54.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCEEEEeCC-----C---------hhchHHH
Q 026506 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIFLDLP-----Q---------PWLAIPS 198 (237)
Q Consensus 135 ~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~v~~~~~-----~---------~~~~l~~ 198 (237)
+|+++|+.+++++.++++++..+..++++++..+=.. .-++. +.+|+++.|.+ + ...+++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~---~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE---GPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S-----EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc---CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 5899999999999999999999887778888765433 11222 47999988753 1 1257999
Q ss_pred HHhcccCCCEEEEEe
Q 026506 199 AKKMLKQDGILCSFS 213 (237)
Q Consensus 199 ~~~~L~~gG~l~~~~ 213 (237)
+.+.|+|||++.++.
T Consensus 78 al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 78 ALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhhccCCEEEEEE
Confidence 999999999987554
No 327
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=97.81 E-value=0.00032 Score=58.30 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=65.5
Q ss_pred HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
......++++||.+|+|. |..+.++++..+ ...+++++.+++..+.+++ .+....+.....+.... ......
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~--~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKK----LGATETVDPSREDPEAQ--KEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCeEEecCCCCCHHHH--HHhcCC
Confidence 456778899999998765 667777777753 2348888888888877754 34321111111111000 001125
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+|+++...+. ...++.+.+.|+++|+++.++
T Consensus 226 ~vd~v~~~~~~-~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATGV-PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCCC-hHHHHHHHHHHhcCCEEEEEe
Confidence 69998765443 347888899999999998765
No 328
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.80 E-value=0.00013 Score=59.96 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=69.3
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE-
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL- 187 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~- 187 (237)
-...+|+|.|.|..+..++... .++-+++.+...+..++.... .| ++...+|.++. .|. .|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~-----~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPK-----GDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCC-----cCeEEEE
Confidence 3789999999999999998864 347788888777777766543 33 66688898854 554 578875
Q ss_pred ----eCCCh--hchHHHHHhcccCCCEEEEEeC
Q 026506 188 ----DLPQP--WLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 188 ----~~~~~--~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
|.++. ..+|+++++.|+|||.+++...
T Consensus 244 WiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 244 WILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred eecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 34333 3689999999999999997754
No 329
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.79 E-value=0.00013 Score=60.03 Aligned_cols=87 Identities=21% Similarity=0.110 Sum_probs=59.4
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..+|.++||+||++|+++..+++. +.+|+++|..+ +-.... . +.++.....|.... .+. .+.+|.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~~~L~------~-~~~V~h~~~d~fr~-~p~--~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MAQSLM------D-TGQVEHLRADGFKF-RPP--RKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cCHhhh------C-CCCEEEEeccCccc-CCC--CCCCCEE
Confidence 468999999999999999888887 35999999543 222111 1 23477777777642 221 2789999
Q ss_pred EEeCCCh-hchHHHHHhcccCC
Q 026506 186 FLDLPQP-WLAIPSAKKMLKQD 206 (237)
Q Consensus 186 ~~~~~~~-~~~l~~~~~~L~~g 206 (237)
++|+... ..+.+.+.+.|..|
T Consensus 275 VcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEecccCHHHHHHHHHHHHhcC
Confidence 9998644 34556666666555
No 330
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.79 E-value=6.6e-05 Score=57.60 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=58.0
Q ss_pred CCCEEEEEccCccHHHHHHHH---HhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC----CCCC-CCC
Q 026506 108 PGCLVLESGTGSGSLTTSLAR---AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ----GFPD-EFS 179 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~---~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~-~~~ 179 (237)
+++.|+|+|.-.|+.++..|. .+++.++|+++|++..... ++..+.+....+|++.++|..+. .... ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 358999999999988877764 4456789999999643322 12222334456799999998751 1111 111
Q ss_pred CCCCEEEEeCCCh----hchHHHHHhcccCCCEEEEEeCCHHH
Q 026506 180 GLADSIFLDLPQP----WLAIPSAKKMLKQDGILCSFSPCIEQ 218 (237)
Q Consensus 180 ~~~D~v~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~~ 218 (237)
....+|+.|.... .+.|+.....+++|+++++.....+.
T Consensus 110 ~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~ 152 (206)
T PF04989_consen 110 PHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIED 152 (206)
T ss_dssp -SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHH
T ss_pred CCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccc
Confidence 3456788776522 35688889999999999866554443
No 331
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=97.75 E-value=0.00098 Score=57.10 Aligned_cols=180 Identities=20% Similarity=0.194 Sum_probs=95.3
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 88 (237)
..+++||+|+.....+ |++|.+|+.|....|... ...|. ....|.+. +...+... ....+..
T Consensus 97 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~g~--~~~~g~~ae~~~v~~~~--~~~vP~~l~~~ 163 (398)
T TIGR01751 97 TRWKVGDEVVASCLQV--------DLTAPDGRVGDPMLSSEQ-RIWGY--ETNFGSFAEFALVKDYQ--LMPKPKHLTWE 163 (398)
T ss_pred CCCCCCCEEEEccccc--------cCCchhhccCcccccccc-ccccc--cCCCccceEEEEechHH--eEECCCCCCHH
Confidence 4588999999987555 777888877755444311 11111 01123332 23333211 1111111
Q ss_pred -cc-ccccccHHH-HHH---hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 026506 89 -TQ-ILYIADISF-VIM---YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS 160 (237)
Q Consensus 89 -~~-~~~~~~~~~-~~~---~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~ 160 (237)
.. .......+. ++. .....+++++|..|+ |. |..+.++++..+ .+++.++.+++..+.+++ .+...
T Consensus 164 ~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G--~~vi~~~~~~~~~~~~~~----~g~~~ 237 (398)
T TIGR01751 164 EAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGG--GNPVAVVSSPEKAEYCRE----LGAEA 237 (398)
T ss_pred HHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----cCCCE
Confidence 00 011111111 211 245678999999998 55 777777787753 567778888887777765 35432
Q ss_pred cEEEEEccc----cC-------------CCC----C-CCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 161 FVTVGVRDI----QG-------------QGF----P-DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 161 ~i~~~~~d~----~~-------------~~~----~-~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.++....|. .+ ..+ . ...+.++|+++..... ..+....+.|+++|+++.++.
T Consensus 238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~--~~~~~~~~~l~~~G~~v~~g~ 311 (398)
T TIGR01751 238 VIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGR--ATFPTSVFVCRRGGMVVICGG 311 (398)
T ss_pred EecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcH--HHHHHHHHhhccCCEEEEEcc
Confidence 222111000 00 000 0 0011459987765543 468889999999999987753
No 332
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=97.75 E-value=9.9e-06 Score=57.93 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=62.9
Q ss_pred CccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC-CCCCEEEEeCCChhchH
Q 026506 118 GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS-GLADSIFLDLPQPWLAI 196 (237)
Q Consensus 118 G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~~D~v~~~~~~~~~~l 196 (237)
|.|..+.++++..+ .+++++|.++..++.+++ .|....++....|+.+ .+.+... .++|+||...+.. ..+
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~-~i~~~~~~~~~d~vid~~g~~-~~~ 72 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVE-QIRELTGGRGVDVVIDCVGSG-DTL 72 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHH-HHHHHTTTSSEEEEEESSSSH-HHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccccccccccccccc-ccccccccccceEEEEecCcH-HHH
Confidence 45788899999874 899999999999999887 4644322222222221 1111111 4799987666544 489
Q ss_pred HHHHhcccCCCEEEEEeCCH
Q 026506 197 PSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 197 ~~~~~~L~~gG~l~~~~~~~ 216 (237)
+.+.+.|+++|++++++...
T Consensus 73 ~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 73 QEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHhccCCEEEEEEccC
Confidence 99999999999999887543
No 333
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00024 Score=55.31 Aligned_cols=105 Identities=24% Similarity=0.362 Sum_probs=69.0
Q ss_pred HHHhcCC-CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 100 ~~~~~~~-~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
+++.+.+ .++..+||+|+.||+++.-+++. ++.+|+++|..-.-+..--+ .-+..+.....|+... .++..
T Consensus 70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR-----~d~rV~~~E~tN~r~l-~~~~~ 141 (245)
T COG1189 70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLR-----NDPRVIVLERTNVRYL-TPEDF 141 (245)
T ss_pred HHHhcCcCCCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHh-----cCCcEEEEecCChhhC-CHHHc
Confidence 4455553 46789999999999999888776 56899999986654443222 1123344555666532 22222
Q ss_pred CCCCCEEEEeCC--ChhchHHHHHhcccCCCEEEEE
Q 026506 179 SGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 179 ~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
.+..|++++|.. .....|..+...+++++.++..
T Consensus 142 ~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 142 TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEE
Confidence 246889988764 3335788888888888877644
No 334
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=97.71 E-value=0.00015 Score=61.00 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=70.6
Q ss_pred hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEFS 179 (237)
Q Consensus 103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~ 179 (237)
...+++|++||..|+ |+ |..+.++++..+ .++++++.+++..+.+++. .|.+..++.... ++.+ .+.....
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~-~i~~~~~ 226 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDA-ALKRYFP 226 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHH-HHHHHCC
Confidence 456889999999998 55 888888888863 5799999999888877632 465443332211 2221 1111112
Q ss_pred CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+++|+++-.... ..+..+.+.|+++|++++++.
T Consensus 227 ~gvD~v~d~vG~--~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 227 EGIDIYFDNVGG--DMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CCcEEEEECCCH--HHHHHHHHHhccCCEEEEECc
Confidence 469997755443 378999999999999998764
No 335
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=97.70 E-value=0.00036 Score=57.83 Aligned_cols=173 Identities=20% Similarity=0.247 Sum_probs=94.5
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEEcCCCeeeeccceeeccccccCCCCceEEeccCcEE-EEECCCHHHHhhhcCCc----
Q 026506 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR---- 88 (237)
Q Consensus 14 ~~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 88 (237)
..+++||+|....... |+.|.+|+.+..+.|... ..+|.. ..|.+. +...+.. +....+..
T Consensus 74 ~~~~~Gd~V~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~---~~g~~~~~~~v~~~--~~~~ip~~~~~~ 139 (332)
T cd08259 74 ERFKPGDRVILYYYIP--------CGKCEYCLSGEENLCRNR-AEYGEE---VDGGFAEYVKVPER--SLVKLPDNVSDE 139 (332)
T ss_pred ccCCCCCEEEECCCCC--------CcCChhhhCCCcccCCCc-cccccc---cCCeeeeEEEechh--heEECCCCCCHH
Confidence 4688999999976555 788888888877777642 222211 123332 2222221 11111111
Q ss_pred --ccccccccHH-HHHHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 026506 89 --TQILYIADIS-FVIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (237)
Q Consensus 89 --~~~~~~~~~~-~~~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~ 163 (237)
.........+ ..+....+.++.++|..|+ |. |..+..++... ..+++++..+++..+.+++ .+... +
T Consensus 140 ~~~~~~~~~~ta~~~l~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~~~~~-~- 211 (332)
T cd08259 140 SAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKAL--GARVIAVTRSPEKLKILKE----LGADY-V- 211 (332)
T ss_pred HHhhhccHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----cCCcE-E-
Confidence 0011111111 1223356788999999986 33 66666777665 3578888877777666543 34322 1
Q ss_pred EEEccccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 164 ~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+...++. ..+... ..+|+++...... .+..+.+.++++|+++.++
T Consensus 212 ~~~~~~~-~~~~~~--~~~d~v~~~~g~~--~~~~~~~~~~~~g~~v~~g 256 (332)
T cd08259 212 IDGSKFS-EDVKKL--GGADVVIELVGSP--TIEESLRSLNKGGRLVLIG 256 (332)
T ss_pred EecHHHH-HHHHhc--cCCCEEEECCChH--HHHHHHHHhhcCCEEEEEc
Confidence 1111111 111111 2589987655432 4778889999999988764
No 336
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=97.69 E-value=0.00022 Score=59.24 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=69.8
Q ss_pred HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF 178 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~ 178 (237)
...++++|++||..|+ |+ |..+.++++..+ .++++++.+++..+.+++ .|.+..+..... +..+ ......
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~-~~~~~~ 204 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEE-TLKKAS 204 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHH-HHHHhC
Confidence 4567889999999995 54 888888888863 578999989988888865 465432332221 1111 011111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++++|+++-.... ..+..+.+.|+++|+++.++.
T Consensus 205 ~~gvdvv~d~~G~--~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 205 PDGYDCYFDNVGG--EFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred CCCeEEEEECCCH--HHHHHHHHHhCcCcEEEEecc
Confidence 2469997754443 256889999999999998764
No 337
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=3.6e-05 Score=56.14 Aligned_cols=125 Identities=22% Similarity=0.195 Sum_probs=80.7
Q ss_pred CCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEEEccccCCCCCCCCCCC
Q 026506 105 ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS--FVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 105 ~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~~~~ 181 (237)
....|.+|+++|.|- |..++.+|... +...|+..|-++..++..++....+-... ......-+... .........
T Consensus 26 n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~-aqsq~eq~t 103 (201)
T KOG3201|consen 26 NKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG-AQSQQEQHT 103 (201)
T ss_pred hHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh-hHHHHhhCc
Confidence 344578999999998 54555566554 56889999999999988887654432111 01111111111 011111257
Q ss_pred CCEEEE-eCC----ChhchHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh-cCc
Q 026506 182 ADSIFL-DLP----QPWLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL-NFT 231 (237)
Q Consensus 182 ~D~v~~-~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~-~f~ 231 (237)
||.|+. |.. ....++..+...|+|.|.-++++|-. +++++++..... +|.
T Consensus 104 FDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 104 FDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFT 160 (201)
T ss_pred ccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeE
Confidence 999875 322 22346777889999999999999986 668888888877 664
No 338
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.66 E-value=0.00043 Score=56.37 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=47.7
Q ss_pred CCEEEEEccCccHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccCCCCCC--CCCCCCCE
Q 026506 109 GCLVLESGTGSGSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPD--EFSGLADS 184 (237)
Q Consensus 109 ~~~vldiG~G~G~~-~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~--~~~~~~D~ 184 (237)
.-++||||+|.... .+..++.. .-+++|.|+++..++.|+++++.+ ++..+|++....-...-+.. .....||.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 45899999999644 33334433 479999999999999999999999 88888988764322111111 11247999
Q ss_pred EEEeCC
Q 026506 185 IFLDLP 190 (237)
Q Consensus 185 v~~~~~ 190 (237)
.++++|
T Consensus 181 tmCNPP 186 (299)
T PF05971_consen 181 TMCNPP 186 (299)
T ss_dssp EEE---
T ss_pred EecCCc
Confidence 999887
No 339
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=97.66 E-value=0.00064 Score=56.76 Aligned_cols=105 Identities=25% Similarity=0.326 Sum_probs=65.5
Q ss_pred HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCC
Q 026506 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDE 177 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~ 177 (237)
+..+.+.++.+||..|+|. |..+.++++..+. ..+++++.+++..+.+++ .+.+..+.....++.+ .....
T Consensus 158 l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~-~~v~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~- 231 (343)
T cd08235 158 QRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGA-RKVIVSDLNEFRLEFAKK----LGADYTIDAAEEDLVEKVRELTD- 231 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----hCCcEEecCCccCHHHHHHHHhC-
Confidence 3445778999999998765 6777777777532 338888888888777654 3432211111111111 00111
Q ss_pred CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+..+|+|+...... ..+..+.+.|+++|+++.++
T Consensus 232 -~~~vd~vld~~~~~-~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 232 -GRGADVVIVATGSP-EAQAQALELVRKGGRILFFG 265 (343)
T ss_pred -CcCCCEEEECCCCh-HHHHHHHHHhhcCCEEEEEe
Confidence 14589977554432 37788899999999998775
No 340
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.64 E-value=0.00012 Score=56.26 Aligned_cols=105 Identities=26% Similarity=0.231 Sum_probs=73.1
Q ss_pred CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe-
Q 026506 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD- 188 (237)
Q Consensus 110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~- 188 (237)
-++||+||=+.......... -.|+.+|+++. . -.+.+.|+.+.++|....+.||+|.+.
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~---------------~-~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ---------------H-PGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC---------------C-CCceeeccccCCCCCCcccceeEEEEEE
Confidence 69999999765444322222 45999999652 1 235678898877765555789999653
Q ss_pred ----CCCh---hchHHHHHhcccCCCE-----EEEEeCCHH--H-----HHHHHHHHHh-cCcccc
Q 026506 189 ----LPQP---WLAIPSAKKMLKQDGI-----LCSFSPCIE--Q-----VQRSCESLRL-NFTGKE 234 (237)
Q Consensus 189 ----~~~~---~~~l~~~~~~L~~gG~-----l~~~~~~~~--~-----~~~~~~~l~~-~f~~v~ 234 (237)
.|++ .+.+.++.+.|+|+|. |+++.|-.. . .+++.+.|.. ||..++
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEE
Confidence 3444 4789999999999999 887765432 1 3677788888 887654
No 341
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=97.61 E-value=0.0018 Score=54.12 Aligned_cols=104 Identities=25% Similarity=0.319 Sum_probs=66.7
Q ss_pred HhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CC
Q 026506 102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EF 178 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~ 178 (237)
..+.+.++.+||..|+++ |..+..+++..+ .+++++..+++..+.+++ .+.+..+.....+..+ .+.. ..
T Consensus 159 ~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~~~~~~ 231 (341)
T cd08297 159 KKAGLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE----LGADAFVDFKKSDDVE-AVKELTG 231 (341)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCCcEEEcCCCccHHH-HHHHHhc
Confidence 334778899999999875 667777788763 589999988887776643 3543312222112211 0110 01
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+..+|+++.+.... ..+..+.+.++++|+++.++
T Consensus 232 ~~~vd~vl~~~~~~-~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 232 GGGAHAVVVTAVSA-AAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CCCCCEEEEcCCch-HHHHHHHHHhhcCCEEEEec
Confidence 25699977544433 37788899999999999775
No 342
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=97.55 E-value=0.00037 Score=57.78 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=69.7
Q ss_pred HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
...++.+|++||..|+ |. |..+.++++..+ .++++++.+++..+.+++ .|.+..++....|+.+ .+.....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~-~v~~~~~ 209 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEE-ALKEAAP 209 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHH-HHHHHCC
Confidence 4456889999999984 44 778888888863 579999989988888876 4654323332223221 1111112
Q ss_pred CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+++|+|+-.... ..++...+.|+++|+++.++
T Consensus 210 ~gvd~vld~~g~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 210 DGIDCYFDNVGG--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCcEEEEECCCH--HHHHHHHHhhccCCEEEEEc
Confidence 569997744433 47889999999999998765
No 343
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00054 Score=56.71 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=79.4
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
..+|+|.-+|+|.=++.++...+. .+++.-|+||++++.+++|+..+...+ ......|+... +.. ....||+|=+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~l-m~~-~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANAL-LHE-LHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHH-HHh-cCCCccEEecC
Confidence 689999999999999988888644 489999999999999999999884444 44444666531 111 12679998888
Q ss_pred C-CChhchHHHHHhcccCCCEEEEEeC
Q 026506 189 L-PQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 189 ~-~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+ +.|..++..+.+.++.||.+.+-.+
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 6 4555699999999999999986654
No 344
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.53 E-value=9.1e-05 Score=59.06 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=61.9
Q ss_pred CCCCEEEEEccCccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----------------C----------
Q 026506 107 VPGCLVLESGTGSGSLT-TSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV----------------S---------- 159 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~-~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----------------~---------- 159 (237)
..|.++||+|||+-..- +.++.. ..+++..|..+.-++..++.+...+. .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 45789999999994332 222222 36899999998888766665433211 0
Q ss_pred -CcE-EEEEccccCCC-CCC--CCCCCCCEEEEeC---------CChhchHHHHHhcccCCCEEEEEe
Q 026506 160 -SFV-TVGVRDIQGQG-FPD--EFSGLADSIFLDL---------PQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 160 -~~i-~~~~~d~~~~~-~~~--~~~~~~D~v~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..+ ++...|+.+.+ +.. ...++||+|+... .....+++++.++|||||.|++.+
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 112 46678887632 222 1123599987532 233468999999999999998654
No 345
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00014 Score=62.06 Aligned_cols=111 Identities=22% Similarity=0.237 Sum_probs=89.9
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CCCCCCCCE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLADS 184 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~D~ 184 (237)
..++-+|||.=+++|.-++..+..+++..++.+.|.+++.++..+.|++.++..+.++....|+...-+. ......||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 3567799999999999999999998777899999999999999999999998888788888887541111 111267999
Q ss_pred EEEeC-CChhchHHHHHhcccCCCEEEEEeCCH
Q 026506 185 IFLDL-PQPWLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 185 v~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
|=+|+ +.+..+|..+.+.++.||.|.+-.+..
T Consensus 187 IDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 187 IDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred EecCCCCCccHHHHHHHHHhhcCCEEEEEecch
Confidence 98887 455569999999999999999766543
No 346
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=97.45 E-value=0.00074 Score=56.47 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=67.7
Q ss_pred hcCCCCC--CEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 103 YLELVPG--CLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 103 ~~~~~~~--~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
..+++++ ++||..|+ |. |..++++++..+ ..++++++.+++..+.+++. .|.+..+.....++.+ .+....
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~-~i~~~~ 221 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAE-RLRELC 221 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHH-HHHHHC
Confidence 3446665 89999997 54 778888888863 23799999998888877663 4654323322222221 111111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..++|+|+-..... .++.+.+.|+++|+++.++
T Consensus 222 ~~gvd~vid~~g~~--~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 222 PEGVDVYFDNVGGE--ISDTVISQMNENSHIILCG 254 (345)
T ss_pred CCCceEEEECCCcH--HHHHHHHHhccCCEEEEEe
Confidence 24699987544443 4688999999999999876
No 347
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=97.45 E-value=0.0028 Score=53.05 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=62.3
Q ss_pred HHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
+....+.++.+||..|+ |. |..+.++++..+ .++++++.+. ..+.+++ .+... +.....+.... .....
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~----~g~~~-~~~~~~~~~~~-~~~~~ 240 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRA----LGADT-VILRDAPLLAD-AKALG 240 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHh----cCCeE-EEeCCCccHHH-HHhhC
Confidence 34556788999999998 55 777777888763 5677777544 5555543 45421 11110000000 11111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
...+|+++..... ..+..+.+.|+++|+++.++
T Consensus 241 ~~~~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 241 GEPVDVVADVVGG--PLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred CCCCcEEEecCCH--HHHHHHHHHhccCCEEEEec
Confidence 2569998755443 36888999999999998664
No 348
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.44 E-value=6.3e-05 Score=60.23 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=70.5
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
.+..|+|+-+|.|+++..+.-.. ++..|+++|.||..++..+.+++.+++..+..+..+|-.. .-+. ..+|.|.+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~---~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPR---LRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCcc---ccchheee
Confidence 45899999999999998554443 4589999999999999999999998877666677777653 2233 67899887
Q ss_pred eC-CChhchHHHHHhcccCCCE
Q 026506 188 DL-PQPWLAIPSAKKMLKQDGI 208 (237)
Q Consensus 188 ~~-~~~~~~l~~~~~~L~~gG~ 208 (237)
.. |...+---.+.++|+|.|-
T Consensus 269 GLlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 269 GLLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred ccccccccchHHHHHHhhhcCC
Confidence 54 3333334456677776553
No 349
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=97.44 E-value=0.0017 Score=53.52 Aligned_cols=106 Identities=22% Similarity=0.202 Sum_probs=61.5
Q ss_pred HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEE--eCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTF--DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
....+.++.+||..|+|. |..+.++++..+ .+++.+ +.+++..+.+++ .++.. +.....|+.+.......
T Consensus 158 ~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~l~~~~~ 230 (306)
T cd08258 158 ERSGIRPGDTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAKE----LGADA-VNGGEEDLAELVNEITD 230 (306)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHH----hCCcc-cCCCcCCHHHHHHHHcC
Confidence 345677889999977655 666677777763 456665 334445555554 35432 11112222110000011
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
...+|+++...+. ...+....+.|+++|+++.++..
T Consensus 231 ~~~vd~vld~~g~-~~~~~~~~~~l~~~G~~v~~g~~ 266 (306)
T cd08258 231 GDGADVVIECSGA-VPALEQALELLRKGGRIVQVGIF 266 (306)
T ss_pred CCCCCEEEECCCC-hHHHHHHHHHhhcCCEEEEEccc
Confidence 1469997655432 34788899999999999977653
No 350
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.43 E-value=0.004 Score=45.25 Aligned_cols=100 Identities=30% Similarity=0.293 Sum_probs=63.8
Q ss_pred EEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCEEEEeC
Q 026506 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIFLDL 189 (237)
Q Consensus 112 vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~v~~~~ 189 (237)
++|+|||+|... .+.........++++|.++.+++.++.......... +.+...|... ..+... ..+|++....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDS--ASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCC--CceeEEeeee
Confidence 999999999977 333332111378889999999888555432211111 4666666653 223320 2689983322
Q ss_pred CC----hhchHHHHHhcccCCCEEEEEeCC
Q 026506 190 PQ----PWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 190 ~~----~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
.. ....+..+.+.++|+|.+++....
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 21 356899999999999998866543
No 351
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=97.42 E-value=0.00078 Score=56.29 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=69.8
Q ss_pred HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF 178 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~ 178 (237)
...++++|++||..|+ |. |..+.++++..+ .+++++..+++..+.+++. .|.+..++.... ++.+ .+....
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~-~i~~~~ 218 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDA-ALKRYF 218 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHH-HHHHhC
Confidence 3456889999999997 54 788888888863 5788888888888877763 355432332211 2221 111111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+++|+|+-.... ..+..+.+.|+++|+++.++
T Consensus 219 ~~gvd~v~d~~g~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 219 PNGIDIYFDNVGG--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CCCcEEEEECCCH--HHHHHHHHHhccCcEEEEec
Confidence 2569997754443 47889999999999999775
No 352
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00094 Score=48.10 Aligned_cols=107 Identities=16% Similarity=0.080 Sum_probs=73.7
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
.++..+.-++..+.+|+|+|-|....+.++. +.....++|+|+-.+..++-+..+.|......|..-|..+.++.+
T Consensus 63 nVLSll~~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d-- 138 (199)
T KOG4058|consen 63 NVLSLLRGNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD-- 138 (199)
T ss_pred HHHHHccCCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc--
Confidence 3556666677779999999999998777766 246788999999999999998888888777888888877544433
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEE
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILC 210 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~ 210 (237)
-.+-+||....-...+-..+..-|..|..++
T Consensus 139 -y~~vviFgaes~m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 139 -YRNVVIFGAESVMPDLEDKLRTELPANTRVV 169 (199)
T ss_pred -cceEEEeehHHHHhhhHHHHHhhCcCCCeEE
Confidence 2233333221111223444555677777776
No 353
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.33 E-value=0.0026 Score=51.16 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=78.4
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-----------------------------
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG----------------------------- 157 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----------------------------- 157 (237)
+...+||.-|||-|.++..++.. .-.+.+.|.|-.|+-...-.+....
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 34579999999999999999987 3689999998877654433222100
Q ss_pred ----------CCCcEEEEEccccCCCCCCCCCCCCCEEE----EeCCC-hhchHHHHHhcccCCCEEEEEeCCHH-----
Q 026506 158 ----------VSSFVTVGVRDIQGQGFPDEFSGLADSIF----LDLPQ-PWLAIPSAKKMLKQDGILCSFSPCIE----- 217 (237)
Q Consensus 158 ----------~~~~i~~~~~d~~~~~~~~~~~~~~D~v~----~~~~~-~~~~l~~~~~~L~~gG~l~~~~~~~~----- 217 (237)
....+....+|+.+.-.+....+.||+|+ +|... -.++++.+.++|||||..+=++|-..
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 01123444556554211111125799885 45543 34789999999999998886655321
Q ss_pred ----------HHHHHHHHHHh-cCccc
Q 026506 218 ----------QVQRSCESLRL-NFTGK 233 (237)
Q Consensus 218 ----------~~~~~~~~l~~-~f~~v 233 (237)
..+++.+.... ||..+
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~ 238 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIE 238 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEE
Confidence 24556666666 77643
No 354
>PHA01634 hypothetical protein
Probab=97.29 E-value=0.0027 Score=44.56 Aligned_cols=74 Identities=12% Similarity=0.018 Sum_probs=54.1
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
.+.+|+|+|++.|..++.++.. ++..|+++|.++...+..+++.+.+.+-++. +...+ ++. .=+.||+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~-v~~~e-----W~~-~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKA-VMKGE-----WNG-EYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeece-eeccc-----ccc-cCCCcceEEE
Confidence 4689999999999999888876 5689999999999999999987766432211 11122 221 1157999888
Q ss_pred eCC
Q 026506 188 DLP 190 (237)
Q Consensus 188 ~~~ 190 (237)
|..
T Consensus 99 DCe 101 (156)
T PHA01634 99 DCE 101 (156)
T ss_pred Ecc
Confidence 765
No 355
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.27 E-value=0.0012 Score=52.03 Aligned_cols=75 Identities=25% Similarity=0.298 Sum_probs=53.9
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..+..+|+|||||-=-++..+... .+...++++|++..++++....+...+.. .++...|... ..+. ...|+.
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~-~~~~---~~~Dla 175 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLS-DPPK---EPADLA 175 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTT-SHTT---SEESEE
T ss_pred CCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeec-cCCC---CCcchh
Confidence 455789999999998888776654 34579999999999999999998888754 6677778874 3333 568998
Q ss_pred EE
Q 026506 186 FL 187 (237)
Q Consensus 186 ~~ 187 (237)
++
T Consensus 176 Ll 177 (251)
T PF07091_consen 176 LL 177 (251)
T ss_dssp EE
T ss_pred hH
Confidence 76
No 356
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.24 E-value=0.0022 Score=54.90 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=63.9
Q ss_pred CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
.+|++|+.+|+|+ |......++..+ .+|+++|.++.+.+.|+. .|.. .. +.. ... ..+|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~----~G~~----~~--~~~-e~v-----~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM----EGYE----VM--TME-EAV-----KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh----cCCE----Ec--cHH-HHH-----cCCCEE
Confidence 5799999999999 777777777653 479999999998888776 4532 11 111 111 347998
Q ss_pred EEeCCChhchHHHH-HhcccCCCEEEEEeCC
Q 026506 186 FLDLPQPWLAIPSA-KKMLKQDGILCSFSPC 215 (237)
Q Consensus 186 ~~~~~~~~~~l~~~-~~~L~~gG~l~~~~~~ 215 (237)
+....... .+... .+.+++||+++..+..
T Consensus 262 I~atG~~~-~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 262 VTTTGNKD-IITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred EECCCCHH-HHHHHHHhcCCCCcEEEEeCCC
Confidence 87655444 66665 9999999999877643
No 357
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00066 Score=55.78 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=66.4
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCCEE
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSI 185 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D~v 185 (237)
...+|||+|.|+|....+.-..++.-..++.+|.|+..-+..... ..+-..........|+.. ..++.. ..|+++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl-~~nv~t~~td~r~s~vt~dRl~lp~a--d~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTL-AENVSTEKTDWRASDVTEDRLSLPAA--DLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHH-HhhcccccCCCCCCccchhccCCCcc--ceeehh
Confidence 346799999999987766655554445677788887655544332 222222212223334432 122221 346665
Q ss_pred EE-e----CCC---hhchHHHHHhcccCCCEEEEEeCCHHHHHHHHH
Q 026506 186 FL-D----LPQ---PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCE 224 (237)
Q Consensus 186 ~~-~----~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 224 (237)
+. | ... -...++.++.++.|||.++++.+.....-+.+.
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~ 236 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERIL 236 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHH
Confidence 53 1 111 123789999999999999999876654433333
No 358
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.18 E-value=0.0032 Score=50.22 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=79.4
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
-.|..|+.+|--- ..+++++ ..+-..++.++|+++..+++..+.++..|+.+ ++...-|+. .++|+...+.||+.+
T Consensus 151 L~gK~I~vvGDDD-Ltsia~a-Lt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr-~plpe~~~~kFDvfi 226 (354)
T COG1568 151 LEGKEIFVVGDDD-LTSIALA-LTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLR-NPLPEDLKRKFDVFI 226 (354)
T ss_pred cCCCeEEEEcCch-hhHHHHH-hcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhc-ccChHHHHhhCCeee
Confidence 3578899998433 2222222 22334789999999999999999999999877 888999988 677776667899999
Q ss_pred EeCCChhc----hHHHHHhcccCC---CEEEEEeCCHHHHHHHHHHHH
Q 026506 187 LDLPQPWL----AIPSAKKMLKQD---GILCSFSPCIEQVQRSCESLR 227 (237)
Q Consensus 187 ~~~~~~~~----~l~~~~~~L~~g---G~l~~~~~~~~~~~~~~~~l~ 227 (237)
.|+|.... ++.+-...||.- |++.+ +-.-.+..+|.+.=+
T Consensus 227 TDPpeTi~alk~FlgRGI~tLkg~~~aGyfgi-T~ressidkW~eiQr 273 (354)
T COG1568 227 TDPPETIKALKLFLGRGIATLKGEGCAGYFGI-TRRESSIDKWREIQR 273 (354)
T ss_pred cCchhhHHHHHHHHhccHHHhcCCCccceEee-eeccccHHHHHHHHH
Confidence 99987653 445556677755 45442 222234566655433
No 359
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.14 E-value=0.0046 Score=56.63 Aligned_cols=119 Identities=21% Similarity=0.277 Sum_probs=73.9
Q ss_pred CCCCEEEEEccCccHHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHH-----------HHHHHH-----c
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAV------AP-----TGHVYTFDFHE---QRAASA-----------REDFER-----T 156 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~------~~-----~~~v~~vD~~~---~~~~~a-----------~~~~~~-----~ 156 (237)
+..-+|+|+|-|+|...+...+.+ .+ .-+++++|..| +-+..+ ++..+. .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 344699999999999776665444 12 24789999654 222222 121111 1
Q ss_pred CC------CC--cEEEEEccccCCCCCCCCCCCCCEEEEeCCCh------h--chHHHHHhcccCCCEEEEEeCCHHHHH
Q 026506 157 GV------SS--FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP------W--LAIPSAKKMLKQDGILCSFSPCIEQVQ 220 (237)
Q Consensus 157 ~~------~~--~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~------~--~~l~~~~~~L~~gG~l~~~~~~~~~~~ 220 (237)
|. .. .+++..+|+.+ .++.. ...+|++|+|.-.| | +++..+.+.++|||+++.|+. ..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~-~~~~~-~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~----a~ 209 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANE-LLPQL-DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS----AG 209 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHH-HHHhc-cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh----HH
Confidence 21 01 24566688764 22221 14699999986433 3 689999999999999998874 34
Q ss_pred HHHHHHHh-cCc
Q 026506 221 RSCESLRL-NFT 231 (237)
Q Consensus 221 ~~~~~l~~-~f~ 231 (237)
.+.+.|.+ ||.
T Consensus 210 ~vr~~l~~~GF~ 221 (662)
T PRK01747 210 FVRRGLQEAGFT 221 (662)
T ss_pred HHHHHHHHcCCe
Confidence 45566666 775
No 360
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.07 E-value=0.0054 Score=49.10 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC-C-CC--C-----
Q 026506 108 PGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-G-FP--D----- 176 (237)
Q Consensus 108 ~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~--~----- 176 (237)
.=...||||||- -...-++++...+.++|.-+|.+|-.+..++..+....- ....++.+|+.+. . +. .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 345899999996 345667888888899999999999999999988765432 2377889998761 0 11 0
Q ss_pred CCCCCCCEEEE-------eCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506 177 EFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 177 ~~~~~~D~v~~-------~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
.....+=+++. |-.++..+++.+.+.|.||..|++.-.+
T Consensus 147 D~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp -TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 01112223222 2246678999999999999999866433
No 361
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.0018 Score=53.88 Aligned_cols=97 Identities=26% Similarity=0.361 Sum_probs=74.9
Q ss_pred cccccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (237)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 171 (237)
+......+....+++.+|.+|+|..|.+|.-+.+++..+...++++++|.+..+.+..++.+...|... ++...+|+..
T Consensus 197 lqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~ 275 (413)
T KOG2360|consen 197 LQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLN 275 (413)
T ss_pred EechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccC
Confidence 334444456778889999999999999999999999998778999999999999999999988888776 6666888876
Q ss_pred CCCCCCCCCCCCEEEEeCC
Q 026506 172 QGFPDEFSGLADSIFLDLP 190 (237)
Q Consensus 172 ~~~~~~~~~~~D~v~~~~~ 190 (237)
...+... .....+++|++
T Consensus 276 t~~~~~~-~~v~~iL~Dps 293 (413)
T KOG2360|consen 276 TATPEKF-RDVTYILVDPS 293 (413)
T ss_pred CCCcccc-cceeEEEeCCC
Confidence 3222211 23455666665
No 362
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.00 E-value=0.0073 Score=53.04 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=64.3
Q ss_pred CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccC-CC----------
Q 026506 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQG-QG---------- 173 (237)
Q Consensus 107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~-~~---------- 173 (237)
.++.+++.+|+|. |..+..++..++ ..|+++|.+++.++.+++ .|... +.+.. .+... ..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~----lGa~~-v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS----MGAEF-LELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeE-EeccccccccccccceeecCHHHH
Confidence 4678999999999 777888888874 469999999998887776 34322 12111 00000 00
Q ss_pred ------CCCCCCCCCCEEEEeC-----CChhchHHHHHhcccCCCEEEEE
Q 026506 174 ------FPDEFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 174 ------~~~~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
+.+ ....+|+||... +.|.-..++..+.+|||+.++-+
T Consensus 235 ~~~~~~~~e-~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 235 AAEMELFAA-QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHH-HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 110 014699997655 34444788899999999998844
No 363
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=96.98 E-value=0.021 Score=47.29 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=64.0
Q ss_pred cCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCC-CCCCC
Q 026506 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFP-DEFSG 180 (237)
Q Consensus 104 ~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~-~~~~~ 180 (237)
...+++.+++..|+|. |..+..++... ..+++.++.+++..+.+++ .+....+.... .+... .+. ...+.
T Consensus 156 ~~~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~-~~~~~~~~~ 228 (336)
T cd08276 156 GPLKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDWGE-EVLKLTGGR 228 (336)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHHH-HHHHHcCCC
Confidence 4578899999887766 55666667665 3578999988888887765 24333122111 11111 010 01114
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++|+++.... ...+..+.+.|+++|+++.++.
T Consensus 229 ~~d~~i~~~~--~~~~~~~~~~l~~~G~~v~~g~ 260 (336)
T cd08276 229 GVDHVVEVGG--PGTLAQSIKAVAPGGVISLIGF 260 (336)
T ss_pred CCcEEEECCC--hHHHHHHHHhhcCCCEEEEEcc
Confidence 6999875543 2367888999999999987653
No 364
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.97 E-value=0.0023 Score=54.13 Aligned_cols=96 Identities=22% Similarity=0.229 Sum_probs=64.4
Q ss_pred EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeC-
Q 026506 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL- 189 (237)
Q Consensus 111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~- 189 (237)
.+||||+|+|.++...++. + +-.++++|.-..|.+.|++....+|..++|+++..-..+...-. ..+.|+++...
T Consensus 69 ~vLdigtGTGLLSmMAvra-g-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~--~~RadI~v~e~f 144 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRA-G-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGG--SSRADIAVREDF 144 (636)
T ss_pred EEEEccCCccHHHHHHHHh-c-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecC--cchhhhhhHhhh
Confidence 6899999999999777766 3 45799999999999999999999999888888765443311110 02366654211
Q ss_pred ------CChhchHHHHHhcc-cCCCEEE
Q 026506 190 ------PQPWLAIPSAKKML-KQDGILC 210 (237)
Q Consensus 190 ------~~~~~~l~~~~~~L-~~gG~l~ 210 (237)
......++.+++.| ++|-+.+
T Consensus 145 dtEligeGalps~qhAh~~L~~~nc~~V 172 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLLVDNCKTV 172 (636)
T ss_pred hhhhhccccchhHHHHHHHhcccCCeec
Confidence 11223566666555 5555544
No 365
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.93 E-value=0.011 Score=46.59 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=50.9
Q ss_pred HHHhcCCCCCC--EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH---HcCC-----CCcEEEEEccc
Q 026506 100 VIMYLELVPGC--LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE---RTGV-----SSFVTVGVRDI 169 (237)
Q Consensus 100 ~~~~~~~~~~~--~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~-----~~~i~~~~~d~ 169 (237)
+++..+++++. +|||.-+|-|.-+..++.. | ++|+++|.||-.....+.-+. .... ..+++++.+|.
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 66667777765 9999999999999888754 3 689999999987666554332 2111 13699999998
Q ss_pred cCCCCCCCCCCCCCEEEEeC
Q 026506 170 QGQGFPDEFSGLADSIFLDL 189 (237)
Q Consensus 170 ~~~~~~~~~~~~~D~v~~~~ 189 (237)
.+ -+. .....||+|++|+
T Consensus 142 ~~-~L~-~~~~s~DVVY~DP 159 (234)
T PF04445_consen 142 LE-YLR-QPDNSFDVVYFDP 159 (234)
T ss_dssp CC-HCC-CHSS--SEEEE--
T ss_pred HH-HHh-hcCCCCCEEEECC
Confidence 76 111 2227899999986
No 366
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=96.90 E-value=0.021 Score=46.02 Aligned_cols=100 Identities=24% Similarity=0.224 Sum_probs=66.5
Q ss_pred HHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
+....+.+++++|..|+|. |..+..+++..+. .++++++.+++..+.+++. +..+.+.....+ ....
T Consensus 90 ~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~----~~~~--- 157 (277)
T cd08255 90 VRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEAL----GPADPVAADTAD----EIGG--- 157 (277)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHHc----CCCccccccchh----hhcC---
Confidence 3456778999999999877 7777788887643 3499999999888877663 411111111000 0111
Q ss_pred CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..+|+++...... ..+....+.|+++|+++.++
T Consensus 158 ~~~d~vl~~~~~~-~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 158 RGADVVIEASGSP-SALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CCCCEEEEccCCh-HHHHHHHHHhcCCcEEEEEe
Confidence 4699977554433 37788899999999998775
No 367
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=96.87 E-value=0.049 Score=44.61 Aligned_cols=55 Identities=36% Similarity=0.576 Sum_probs=44.8
Q ss_pred CCCCCCEEEEEEcCCcEEEEEEcCCCeee-eccceeeccccccCCCCceEEeccCc
Q 026506 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQ-NRFGAFKHSDWIGKPFGSMVFSNKGG 69 (237)
Q Consensus 15 ~~~~Gd~V~i~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~ 69 (237)
.+++||.|++..+.+..+.+.+.++.... .+.|.++..+++|.+||.++....+.
T Consensus 3 ~I~~gd~Vil~~~~~~~k~v~l~~~~~i~lGK~~sf~~~~lIG~pyg~tfEi~~~~ 58 (299)
T PF04189_consen 3 IIQEGDYVILRLPSGNMKIVKLKPNKTISLGKFGSFPLNDLIGRPYGSTFEIQDDK 58 (299)
T ss_pred CcCCCCEEEEEcCCCcEEEEEECCCCEEEecCCCcccHHHhcCCCCCcEEEEeCCC
Confidence 57999999999888888888999887666 46777889999999999887554433
No 368
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.85 E-value=0.015 Score=47.30 Aligned_cols=110 Identities=17% Similarity=0.082 Sum_probs=68.0
Q ss_pred EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (237)
Q Consensus 111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 190 (237)
+++|+.||.|++...+... +...++++|+++.+.+..+.|.... ...+|+.+..... ..+.+|+++.++|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~-~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKD-FIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhh-cCCCCCEEEeCCC
Confidence 6899999999998777654 3467899999999999988875311 3455665422111 0256999998877
Q ss_pred Chh---------------c---hHHHHHhcccCCCEEEEEeCC------HHHHHHHHHHHHh-cC
Q 026506 191 QPW---------------L---AIPSAKKMLKQDGILCSFSPC------IEQVQRSCESLRL-NF 230 (237)
Q Consensus 191 ~~~---------------~---~l~~~~~~L~~gG~l~~~~~~------~~~~~~~~~~l~~-~f 230 (237)
+.. . .+-++.+.++|.=.++=.++. ......+++.+++ |+
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGY 136 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCc
Confidence 431 1 123344555666444422322 2335666677766 54
No 369
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.85 E-value=0.00022 Score=54.28 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=60.0
Q ss_pred CCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCCCCCCCCEEEE
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~~D~v~~ 187 (237)
+.++||+|+|-|-.+..++... .+|++.|.|..|....++. + .++.. .+..+. +-++|+|.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----~----ynVl~~~ew~~t------~~k~dli~c 175 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----N----YNVLTEIEWLQT------DVKLDLILC 175 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----C----Cceeeehhhhhc------CceeehHHH
Confidence 4699999999999999988876 5799999998888776652 3 22211 122211 135888753
Q ss_pred ----e-CCChhchHHHHHhcccC-CCEEE
Q 026506 188 ----D-LPQPWLAIPSAKKMLKQ-DGILC 210 (237)
Q Consensus 188 ----~-~~~~~~~l~~~~~~L~~-gG~l~ 210 (237)
| .-++..+++.++.+|+| +|+++
T Consensus 176 lNlLDRc~~p~kLL~Di~~vl~psngrvi 204 (288)
T KOG3987|consen 176 LNLLDRCFDPFKLLEDIHLVLAPSNGRVI 204 (288)
T ss_pred HHHHHhhcChHHHHHHHHHHhccCCCcEE
Confidence 1 34666789999999998 88766
No 370
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.0039 Score=54.02 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=72.7
Q ss_pred CCEEEEEccCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 109 GCLVLESGTGSGSLTTSLARA---VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
-..|+.+|+|.|-+.....+. .....+++++|-+|+++-..+. .....++++++++..|+....-+. .+.|++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~---eq~DI~ 443 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPR---EQADII 443 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCch---hhccch
Confidence 346788999999887655433 3345789999999999888766 444566788999999998744332 679998
Q ss_pred EEeC-------CChhchHHHHHhcccCCCEEE
Q 026506 186 FLDL-------PQPWLAIPSAKKMLKQDGILC 210 (237)
Q Consensus 186 ~~~~-------~~~~~~l~~~~~~L~~gG~l~ 210 (237)
+... .-..+.|..+.+.|||.|+.+
T Consensus 444 VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 444 VSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred HHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 7422 233468999999999999877
No 371
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=96.67 E-value=0.013 Score=47.54 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=80.4
Q ss_pred HHHhcCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 177 (237)
+++..++++|++|+.-++. . |....++++.. .++|+++=-+++.++++++. .|.+..+++...|+.+ .+.+.
T Consensus 142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlk--G~rVVGiaGg~eK~~~l~~~---lGfD~~idyk~~d~~~-~L~~a 215 (340)
T COG2130 142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLK--GCRVVGIAGGAEKCDFLTEE---LGFDAGIDYKAEDFAQ-ALKEA 215 (340)
T ss_pred HHHhcCCCCCCEEEEEecccccchHHHHHHHhh--CCeEEEecCCHHHHHHHHHh---cCCceeeecCcccHHH-HHHHH
Confidence 4455578999999887653 3 88888899874 58999999999999998875 4666667888777764 23322
Q ss_pred CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
...+.|+.|.|.... .++.+...|+..+++.+.+.
T Consensus 216 ~P~GIDvyfeNVGg~--v~DAv~~~ln~~aRi~~CG~ 250 (340)
T COG2130 216 CPKGIDVYFENVGGE--VLDAVLPLLNLFARIPVCGA 250 (340)
T ss_pred CCCCeEEEEEcCCch--HHHHHHHhhccccceeeeee
Confidence 336799999888764 67888888888888876543
No 372
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=96.59 E-value=0.039 Score=44.55 Aligned_cols=109 Identities=12% Similarity=0.226 Sum_probs=65.8
Q ss_pred HHHhcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-
Q 026506 100 VIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD- 176 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~- 176 (237)
+-...++++|+.|+-=|+-+ |...+++++.++- ..+-.+ .+..-++.+++.++..|.+..+. .....+.....
T Consensus 152 L~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvV-RdR~~ieel~~~Lk~lGA~~ViT--eeel~~~~~~k~ 227 (354)
T KOG0025|consen 152 LKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVV-RDRPNIEELKKQLKSLGATEVIT--EEELRDRKMKKF 227 (354)
T ss_pred HHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEe-ecCccHHHHHHHHHHcCCceEec--HHHhcchhhhhh
Confidence 34566889999999988877 6678889988743 344433 34455777788888888765222 11111100000
Q ss_pred -CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 177 -EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 177 -~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
....+.-+.+-+.... .-.++.+.|..||.++.|+-
T Consensus 228 ~~~~~~prLalNcVGGk--sa~~iar~L~~GgtmvTYGG 264 (354)
T KOG0025|consen 228 KGDNPRPRLALNCVGGK--SATEIARYLERGGTMVTYGG 264 (354)
T ss_pred hccCCCceEEEeccCch--hHHHHHHHHhcCceEEEecC
Confidence 0012344444444433 34667889999999997753
No 373
>PRK11524 putative methyltransferase; Provisional
Probab=96.58 E-value=0.0077 Score=49.23 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=40.1
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 155 (237)
-.+|+.|||..+|+|..+.+..+. ..+.+++|++++.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 478999999999999988665544 47899999999999999999753
No 374
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.0061 Score=47.34 Aligned_cols=113 Identities=18% Similarity=0.110 Sum_probs=68.1
Q ss_pred CCEEEEEccCccHHHHHHHHHhCC----C----cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC----C
Q 026506 109 GCLVLESGTGSGSLTTSLARAVAP----T----GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP----D 176 (237)
Q Consensus 109 ~~~vldiG~G~G~~~~~~~~~~~~----~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~ 176 (237)
-.+++|+++.+|.++..+++.+.. . .+++++|+.+- ..++. +.-.++|+....-. .
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~G-V~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEG-VIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCc-eEEeecccCCHhHHHHHHH
Confidence 358999999999999998887632 1 23999998541 13334 55567787651111 1
Q ss_pred C-CCCCCCEEEEeCCCh----------------hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHhcCccc
Q 026506 177 E-FSGLADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTGK 233 (237)
Q Consensus 177 ~-~~~~~D~v~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~f~~v 233 (237)
. .+...|+|++|.... ..+|.-...+|+|||.++.-.--......+...|+.-|..|
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhce
Confidence 1 124799999875422 13566678899999999833222222333333444334444
No 375
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=96.52 E-value=0.014 Score=48.47 Aligned_cols=99 Identities=10% Similarity=0.009 Sum_probs=60.8
Q ss_pred CCCEEEEE--ccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 108 PGCLVLES--GTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 108 ~~~~vldi--G~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
++..++.+ |+|. |..+.++++..+ .++++++.+++..+.+++ .|.+..+.....++.+.......+.++|+
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~~~~~~d~ 215 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELIAKLNATI 215 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHhCCCCCcE
Confidence 45555554 6666 777778888763 579999999988888876 46543233222222210000011146999
Q ss_pred EEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++...... ......+.++++|+++.++.
T Consensus 216 vid~~g~~--~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 216 FFDAVGGG--LTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred EEECCCcH--HHHHHHHhhCCCCEEEEEEe
Confidence 87554432 45667889999999988763
No 376
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=96.31 E-value=0.11 Score=40.20 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=69.2
Q ss_pred ccccHHHHHHhcCCCCCCEEEEEccCcc----HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506 93 YIADISFVIMYLELVPGCLVLESGTGSG----SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (237)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~vldiG~G~G----~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d 168 (237)
.|....++...+.=.....+++..++.| .+++..|.+- ..++++.+-.+++.+...++.+...+..+..+|..++
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 4444444545544455678888866543 2333334432 4578888888888777777777767776657888887
Q ss_pred ccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhccc--CCCEEE
Q 026506 169 IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK--QDGILC 210 (237)
Q Consensus 169 ~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~--~gG~l~ 210 (237)
..+..++.. ..+|.+++|.... +..+++++.++ |.|-++
T Consensus 105 ~~e~~~~~~--~~iDF~vVDc~~~-d~~~~vl~~~~~~~~GaVV 145 (218)
T PF07279_consen 105 APEEVMPGL--KGIDFVVVDCKRE-DFAARVLRAAKLSPRGAVV 145 (218)
T ss_pred CHHHHHhhc--cCCCEEEEeCCch-hHHHHHHHHhccCCCceEE
Confidence 543223222 4699999998643 24445555554 445544
No 377
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.31 E-value=0.0083 Score=46.88 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=33.0
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~ 151 (237)
..+|+.|||..+|+|..+.+.... +.+.+++|++++..+.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 477999999999999988665554 4789999999999998864
No 378
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=96.29 E-value=0.024 Score=46.88 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=65.5
Q ss_pred cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
....++.+||..|+ |. |..+.++++..+ .++++++.++...+.+++. .+....+.....++.. .+.....+.
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~-~v~~~~~~~ 214 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAE-ALKEAAPDG 214 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHH-HHHHhccCC
Confidence 45678899999984 54 777777888753 5799999888887777653 3433222222212211 011111146
Q ss_pred CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+|+++..... ..+..+.+.++++|+++.++
T Consensus 215 ~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 215 IDVYFDNVGG--EILDAALTLLNKGGRIALCG 244 (329)
T ss_pred ceEEEEcchH--HHHHHHHHhcCCCceEEEEe
Confidence 9997754443 37888999999999998765
No 379
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.28 E-value=0.0057 Score=52.60 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=72.6
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC---CCCC-CCCCCCCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFP-DEFSGLAD 183 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~-~~~~~~~D 183 (237)
.+..+|.+|-|+|.+...+...+ +..++++++++|++++.|++++....-. +..+...|..+ .... ......||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCc
Confidence 45678999999999988777776 4578999999999999999987543222 23444444433 1010 01225799
Q ss_pred EEEEeCCCh--------------hchHHHHHhcccCCCEEEEEeCC
Q 026506 184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 184 ~v~~~~~~~--------------~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
+++.|.... ..++..+...|.|.|.+++...+
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 998764311 24688889999999998866543
No 380
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.26 E-value=0.0053 Score=49.20 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=69.4
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
..+..++|+|||-|-.+.. .+...+++.|++...+.-+++. +- ......|+...++.. .+||.++
T Consensus 44 ~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~----~~---~~~~~ad~l~~p~~~---~s~d~~l 108 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS----GG---DNVCRADALKLPFRE---ESFDAAL 108 (293)
T ss_pred CCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC----CC---ceeehhhhhcCCCCC---Cccccch
Confidence 3488999999999866521 2456799999998888877652 21 256778888766665 7888865
Q ss_pred EeC--------CChhchHHHHHhcccCCCEEEEEeCCHHH
Q 026506 187 LDL--------PQPWLAIPSAKKMLKQDGILCSFSPCIEQ 218 (237)
Q Consensus 187 ~~~--------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 218 (237)
.-. .....+++++.+.|+|||...+|+-...+
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 321 12236899999999999998878754443
No 381
>PRK13699 putative methylase; Provisional
Probab=96.24 E-value=0.019 Score=45.27 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=40.6
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 156 (237)
..+|+.|||..||+|..+.+..+. ..+.+++|++++..+.+.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 468999999999999988665554 478999999999999999987653
No 382
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=96.16 E-value=0.018 Score=45.90 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=66.4
Q ss_pred CCCCEEEEEccCccHHHHHHHHHh---C-CCcEEEEEeCC--------------------------HHHHHHHHHHHHHc
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAV---A-PTGHVYTFDFH--------------------------EQRAASAREDFERT 156 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~---~-~~~~v~~vD~~--------------------------~~~~~~a~~~~~~~ 156 (237)
.-...++|+|+-.|+.++.++..+ + ...+++++|.= .-..+..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 344689999999998776654433 2 34689999831 11344555555555
Q ss_pred CC-CCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh---hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHH
Q 026506 157 GV-SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227 (237)
Q Consensus 157 ~~-~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~ 227 (237)
++ +.++.++.+.+.+ .++.....++-++.+|..-. ...|+.++..|.|||++++-.-......+.....+
T Consensus 153 gl~~~~v~~vkG~F~d-TLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~gcr~AvdeF~ 226 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPD-TLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPGCRKAVDEFR 226 (248)
T ss_dssp TTSSTTEEEEES-HHH-HCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHHHHHHHHHHH
T ss_pred CCCcccEEEECCcchh-hhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHH
Confidence 53 3459999999874 34432224555555666533 36799999999999999966543333333333333
No 383
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=96.15 E-value=0.029 Score=46.28 Aligned_cols=104 Identities=19% Similarity=0.242 Sum_probs=63.1
Q ss_pred HHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CC
Q 026506 101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DE 177 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~ 177 (237)
+....+.++.+||..|+ |. |..+.++++.++ .+++.+..+++..+.+++ .+.+..+.....++.. .+. ..
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~i~~~~ 204 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELRA----LGIGPVVSTEQPGWQD-KVREAA 204 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHh----cCCCEEEcCCCchHHH-HHHHHh
Confidence 34467788999999986 44 777788888863 466666656666665554 3543211111111110 000 01
Q ss_pred CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+.++|+|+...... .+..+.+.|+++|+++.++
T Consensus 205 ~~~~~d~v~d~~g~~--~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 205 GGAPISVALDSVGGK--LAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred CCCCCcEEEECCCCh--hHHHHHHhhcCCcEEEEEe
Confidence 114699988554442 5688899999999998775
No 384
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.15 E-value=0.042 Score=47.47 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=72.2
Q ss_pred CCCC-EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~-~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
++-. +++.+|||---+..++.+. +...++.+|+|+..++.....-. ..... +.+...|.....++. ..||+|
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~-~~~~~-~~~~~~d~~~l~fed---ESFdiV 118 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNA-KERPE-MQMVEMDMDQLVFED---ESFDIV 118 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccc-cCCcc-eEEEEecchhccCCC---cceeEE
Confidence 4445 9999999998888776654 45789999999999888766432 11222 678888888777877 788887
Q ss_pred EE---------eCCChh------chHHHHHhcccCCCEEEEEe
Q 026506 186 FL---------DLPQPW------LAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 186 ~~---------~~~~~~------~~l~~~~~~L~~gG~l~~~~ 213 (237)
+. +....+ ..+.++++.+++||+.+.++
T Consensus 119 IdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 119 IDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred EecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 64 111222 35788999999999977554
No 385
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=96.14 E-value=0.033 Score=45.62 Aligned_cols=104 Identities=25% Similarity=0.194 Sum_probs=63.9
Q ss_pred HhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CCC
Q 026506 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEF 178 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~ 178 (237)
....+.++.+++..|+|. |..+..+++..+ .+ ++++..+++..+.+++ .++...+.....+..+ .+. ...
T Consensus 123 ~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~l~~~~~ 195 (312)
T cd08269 123 RRGWIRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALARE----LGATEVVTDDSEAIVE-RVRELTG 195 (312)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCceEecCCCcCHHH-HHHHHcC
Confidence 355678899999998766 666777777763 45 8888888877775543 4543211111111111 010 011
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+.++|+++..... ...+....+.|+++|+++.++
T Consensus 196 ~~~vd~vld~~g~-~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 196 GAGADVVIEAVGH-QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHHhccCCEEEEEc
Confidence 1469997755433 336788899999999999775
No 386
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=96.13 E-value=0.034 Score=45.32 Aligned_cols=103 Identities=22% Similarity=0.230 Sum_probs=64.8
Q ss_pred hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
...+.++.+||..|+ |. |..+..++...+ .++++++.+++..+.+++ .+....+.....+..........+.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARA----AGADHVINYRDEDFVERVREITGGR 204 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----CCCCEEEeCCchhHHHHHHHHcCCC
Confidence 356778999999994 54 777777787763 578888888888877754 4543211111111111000001114
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+|+++..... ..+..+.+.|+++|+++.++
T Consensus 205 ~~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 205 GVDVVYDGVGK--DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred CeeEEEECCCc--HhHHHHHHhhccCcEEEEEe
Confidence 69998755443 36788899999999998764
No 387
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=96.10 E-value=0.021 Score=48.00 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=56.1
Q ss_pred CCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506 105 ELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (237)
Q Consensus 105 ~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 182 (237)
+.++|..||.+|.++ |..++++|+..+ ...++.-.+.+.++.+++ +|.+..+++...|+.+...... ..+|
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~----lGAd~vvdy~~~~~~e~~kk~~-~~~~ 226 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKK----LGADEVVDYKDENVVELIKKYT-GKGV 226 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHH----cCCcEeecCCCHHHHHHHHhhc-CCCc
Confidence 578899999998877 567788888864 245555667888888877 5777667777666664322221 3689
Q ss_pred CEEEEeCCCh
Q 026506 183 DSIFLDLPQP 192 (237)
Q Consensus 183 D~v~~~~~~~ 192 (237)
|+|+-.....
T Consensus 227 DvVlD~vg~~ 236 (347)
T KOG1198|consen 227 DVVLDCVGGS 236 (347)
T ss_pred cEEEECCCCC
Confidence 9977655543
No 388
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.04 E-value=0.16 Score=40.44 Aligned_cols=106 Identities=16% Similarity=0.031 Sum_probs=60.1
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----CCCCcEEEEEccccCCCCCCCCCCC-
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-----GVSSFVTVGVRDIQGQGFPDEFSGL- 181 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~~- 181 (237)
....||++|+|+|..++.++... ..++...|. +..++..+.+...+ .....+.+...+...........+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 46789999999997776666653 467888886 44444444443222 2222355555444431111111133
Q ss_pred CCEEEEe-----CCChhchHHHHHhcccCCCEEEEEeCCH
Q 026506 182 ADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 182 ~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
+|+|+.. ...+..++..+...|..++++++..+-.
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 8988742 2233346777788888888665555443
No 389
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.04 E-value=0.019 Score=44.28 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=58.5
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHc-----------------------------
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERT----------------------------- 156 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~----------------------------- 156 (237)
..+-++.|-+||+|++...+.-..+. -..|++.|+++++++.|++|+...
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 44569999999999987666544322 268999999999999998884211
Q ss_pred ------------CCCCcEEEEEccccCCCCC--CCCCCCCCEEEEeCC----Chh----------chHHHHHhcccCCCE
Q 026506 157 ------------GVSSFVTVGVRDIQGQGFP--DEFSGLADSIFLDLP----QPW----------LAIPSAKKMLKQDGI 208 (237)
Q Consensus 157 ------------~~~~~i~~~~~d~~~~~~~--~~~~~~~D~v~~~~~----~~~----------~~l~~~~~~L~~gG~ 208 (237)
|-.....+...|+++.... .......|+|+.|.| ..| ..|+.+...|.++++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 1112255667777651110 001134799999876 122 468999999955555
Q ss_pred EEE
Q 026506 209 LCS 211 (237)
Q Consensus 209 l~~ 211 (237)
+++
T Consensus 210 V~v 212 (246)
T PF11599_consen 210 VAV 212 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 390
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=96.02 E-value=0.0053 Score=54.10 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=60.2
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCC----C---CCCCC
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ----G---FPDEF 178 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----~---~~~~~ 178 (237)
+.++..|||+||.+|++....+..++.++-|+++|+-|- ..+++ +...+.|+... . ....
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----------kp~~~-c~t~v~dIttd~cr~~l~k~l~t- 108 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----------KPIPN-CDTLVEDITTDECRSKLRKILKT- 108 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----------ccCCc-cchhhhhhhHHHHHHHHHHHHHh-
Confidence 578899999999999999888888877788999998552 12223 33333444321 0 0111
Q ss_pred CCCCCEEEEeCCCh----h------------chHHHHHhcccCCCEEE
Q 026506 179 SGLADSIFLDLPQP----W------------LAIPSAKKMLKQDGILC 210 (237)
Q Consensus 179 ~~~~D~v~~~~~~~----~------------~~l~~~~~~L~~gG~l~ 210 (237)
-..|+|++|.... | ..+..+...|..||.++
T Consensus 109 -~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 109 -WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred -CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 2469988875422 2 24566678888999976
No 391
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.00 E-value=0.046 Score=46.80 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=60.4
Q ss_pred CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..|.+|+.+|+|. |......++.+ ..+|+++|.++.....++. .|. .+. +.. ..+ ...|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~le-eal-----~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TME-EAA-----KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHH-HHH-----hcCCEE
Confidence 5789999999999 76676677765 3589999999876544443 242 111 221 111 347998
Q ss_pred EEeCCChhchHH-HHHhcccCCCEEEEEeCC
Q 026506 186 FLDLPQPWLAIP-SAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 186 ~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~ 215 (237)
+...+... .+. .....+|+|++++..+-.
T Consensus 255 ItaTG~~~-vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 255 ITATGNKD-VIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred EECCCCHH-HHHHHHHhcCCCCcEEEEECCC
Confidence 76655443 555 488899999999977643
No 392
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=96.00 E-value=0.061 Score=44.09 Aligned_cols=100 Identities=25% Similarity=0.320 Sum_probs=65.9
Q ss_pred cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
....++++||..|+ |. |..+.++++..+ .+++++..+++..+.+++ .|++. +.....++.+ .+... +.+
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~-~i~~~-~~~ 208 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLKE----LGADE-VVIDDGAIAE-QLRAA-PGG 208 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCcE-EEecCccHHH-HHHHh-CCC
Confidence 34778999999997 44 778888888863 568888888887777754 45432 2111112111 11111 257
Q ss_pred CCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+|+++..... ..+..+.+.|+++|+++.++.
T Consensus 209 ~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 209 FDKVLELVGT--ATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred ceEEEECCCh--HHHHHHHHHhccCCEEEEEcc
Confidence 9998755443 378889999999999987653
No 393
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=95.81 E-value=0.062 Score=44.26 Aligned_cols=106 Identities=22% Similarity=0.176 Sum_probs=66.3
Q ss_pred HHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
......+++.+|+..|+ |. |..+..+++..+ .++++++.+++..+.+++ .+....+.....+..........
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~ 208 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRA----LGADVAVDYTRPDWPDQVREALG 208 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHcC
Confidence 34456788999999985 44 777778888863 578999988888877754 35432122111121110000011
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+..+|+++...... ..+.+.+.|+++|+++.++.
T Consensus 209 ~~~~d~vl~~~g~~--~~~~~~~~l~~~g~~v~~g~ 242 (324)
T cd08244 209 GGGVTVVLDGVGGA--IGRAALALLAPGGRFLTYGW 242 (324)
T ss_pred CCCceEEEECCChH--hHHHHHHHhccCcEEEEEec
Confidence 14699987555443 45888999999999987753
No 394
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.77 E-value=0.058 Score=46.50 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=60.3
Q ss_pred CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..|.+|+.+|+|. |......++.++ .+|+++|.++.....+.. .|. ++. +.. ..+ ..+|+|
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~----~G~----~v~--~l~-eal-----~~aDVV 271 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAM----DGF----RVM--TME-EAA-----ELGDIF 271 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHh----cCC----Eec--CHH-HHH-----hCCCEE
Confidence 3789999999999 666666676653 589999999876544433 232 111 221 111 358998
Q ss_pred EEeCCChhchHH-HHHhcccCCCEEEEEeCC
Q 026506 186 FLDLPQPWLAIP-SAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 186 ~~~~~~~~~~l~-~~~~~L~~gG~l~~~~~~ 215 (237)
+....... .+. .....+|+|++++..+..
T Consensus 272 I~aTG~~~-vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 272 VTATGNKD-VITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred EECCCCHH-HHHHHHHhcCCCCCEEEEcCCC
Confidence 76654443 565 688999999999877644
No 395
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.77 E-value=0.089 Score=36.49 Aligned_cols=97 Identities=21% Similarity=0.170 Sum_probs=61.0
Q ss_pred EEEEccCccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCEEEEeC
Q 026506 112 VLESGTGSGSLTTSLARAVAPTG-HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFLDL 189 (237)
Q Consensus 112 vldiG~G~G~~~~~~~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~v~~~~ 189 (237)
|+.+|+| .++..+++.+.... .++.+|.+++..+.+++. + +.+..+|..+.. +....-..+|.+++..
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEcc
Confidence 3455554 55555555543334 899999999998888763 3 567889887621 1111115689998887
Q ss_pred CChhch--HHHHHhcccCCCEEEEEeCCHHH
Q 026506 190 PQPWLA--IPSAKKMLKQDGILCSFSPCIEQ 218 (237)
Q Consensus 190 ~~~~~~--l~~~~~~L~~gG~l~~~~~~~~~ 218 (237)
++.... +....+.+.|...+++.......
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence 766533 34455667788888877765544
No 396
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.75 E-value=0.2 Score=44.47 Aligned_cols=122 Identities=14% Similarity=0.059 Sum_probs=75.9
Q ss_pred cccccHHH-HHHhcCC--CCCCEEEEEccCccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEE
Q 026506 92 LYIADISF-VIMYLEL--VPGCLVLESGTGSGSLTTSLARAVA---PTGHVYTFDFHEQRAASAREDFERTGVS-SFVTV 164 (237)
Q Consensus 92 ~~~~~~~~-~~~~~~~--~~~~~vldiG~G~G~~~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~i~~ 164 (237)
..|..+.. +...+.+ .|+..+.|..||+|++.......+. ....+++.+.++.+...++.++..++.. +....
T Consensus 198 ~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~ 277 (501)
T TIGR00497 198 FTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNI 277 (501)
T ss_pred eCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCc
Confidence 33444433 4444443 3668999999999998866554432 1246899999999999999987666542 22333
Q ss_pred EEccccCC-CCCCCCCCCCCEEEEeCCCh------------------------------hchHHHHHhcccCCCEEEEEe
Q 026506 165 GVRDIQGQ-GFPDEFSGLADSIFLDLPQP------------------------------WLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 165 ~~~d~~~~-~~~~~~~~~~D~v~~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..+|-... .+.. ...||.|+.++|-. ..++......|++||+..++-
T Consensus 278 ~~~dtl~~~d~~~--~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 278 INADTLTTKEWEN--ENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred ccCCcCCCccccc--cccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 34444321 1111 14588887766410 135667788999999877665
Q ss_pred CC
Q 026506 214 PC 215 (237)
Q Consensus 214 ~~ 215 (237)
|.
T Consensus 356 ~~ 357 (501)
T TIGR00497 356 FP 357 (501)
T ss_pred cC
Confidence 53
No 397
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=95.73 E-value=0.068 Score=44.13 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=62.6
Q ss_pred CCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 108 PGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 108 ~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
++++||..|+ |. |..+.++++..+ .++++++.+++..+.+++ .|....+... +.....+.......+|+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~v~~~~--~~~~~~~~~~~~~~~d~v 217 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKK----LGAKEVIPRE--ELQEESIKPLEKQRWAGA 217 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHH----cCCCEEEcch--hHHHHHHHhhccCCcCEE
Confidence 4679999998 55 777778888763 578999988888887755 4543211111 110011111112569997
Q ss_pred EEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+-.... ..++...+.|+++|+++.++.
T Consensus 218 ld~~g~--~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 218 VDPVGG--KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred EECCcH--HHHHHHHHHhhcCCEEEEEee
Confidence 744433 378889999999999998864
No 398
>PLN02494 adenosylhomocysteinase
Probab=95.70 E-value=0.058 Score=46.90 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=61.2
Q ss_pred CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..|.+|+.+|+|. |......++.++ .+|+++|.++.....+.. .|.. +. +.. ..+ ...|+|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~----~G~~----vv--~le-Eal-----~~ADVV 313 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALM----EGYQ----VL--TLE-DVV-----SEADIF 313 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHh----cCCe----ec--cHH-HHH-----hhCCEE
Confidence 5689999999999 666666666653 589999999876554433 2422 11 221 111 347998
Q ss_pred EEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+........+.+..++.||+||+++..+-
T Consensus 314 I~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 314 VTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 87555444345889999999999997765
No 399
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=95.69 E-value=0.045 Score=45.29 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=63.6
Q ss_pred hcCCCCCCEEEEEc-cCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 103 ~~~~~~~~~vldiG-~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
.....++++++..| +|. |..+.++++..+ .++++++.+++..+.+++ .|.+..+.....++.+.......+.
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 208 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGSAQKAQRAKK----AGAWQVINYREENIVERVKEITGGK 208 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----CCCCEEEcCCCCcHHHHHHHHcCCC
Confidence 34578899999986 444 777778888863 578889988888877754 4543212211111110000001114
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+|+++..... ..+....+.++++|+++.++
T Consensus 209 ~~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g 239 (327)
T PRK10754 209 KVRVVYDSVGK--DTWEASLDCLQRRGLMVSFG 239 (327)
T ss_pred CeEEEEECCcH--HHHHHHHHHhccCCEEEEEc
Confidence 68987744433 36777889999999998764
No 400
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=95.64 E-value=0.072 Score=44.06 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=63.5
Q ss_pred cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
....++++++..|+ |. |..+..++...+ .+++++..+++..+.+++ .+.+..+.....+... .+.......
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~~~~~~~~ 207 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAG--CHVIGTCSSDEKAEFLKS----LGCDRPINYKTEDLGE-VLKKEYPKG 207 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcC--CeEEEEeCcHHHHHHHHH----cCCceEEeCCCccHHH-HHHHhcCCC
Confidence 46788999999985 44 777777887763 568888888887777654 3542211111111110 010111145
Q ss_pred CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+|+++..... ..+..+.+.|+++|+++.++
T Consensus 208 vd~v~~~~g~--~~~~~~~~~l~~~g~~v~~g 237 (329)
T cd08250 208 VDVVYESVGG--EMFDTCVDNLALKGRLIVIG 237 (329)
T ss_pred CeEEEECCcH--HHHHHHHHHhccCCeEEEEe
Confidence 8997755443 47888899999999988665
No 401
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.61 E-value=0.081 Score=43.69 Aligned_cols=103 Identities=16% Similarity=0.047 Sum_probs=66.2
Q ss_pred HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
..+.+......+++.+|+|. |......+....+..++...+.+++..+...+.+...+ +.+...+.. ...
T Consensus 116 a~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~----~~~~~~~~~-~av---- 186 (304)
T PRK07340 116 AARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG----PTAEPLDGE-AIP---- 186 (304)
T ss_pred HHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC----CeeEECCHH-HHh----
Confidence 45566666678999999998 55554444333455789999999888777666654332 222222322 111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
..+|+|+...+....++.. .++||-.+..++..
T Consensus 187 -~~aDiVitaT~s~~Pl~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 187 -EAVDLVVTATTSRTPVYPE---AARAGRLVVAVGAF 219 (304)
T ss_pred -hcCCEEEEccCCCCceeCc---cCCCCCEEEecCCC
Confidence 4689999877766656654 37888877766643
No 402
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=95.57 E-value=0.081 Score=43.23 Aligned_cols=103 Identities=21% Similarity=0.201 Sum_probs=63.3
Q ss_pred hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
...+.++.+|+..|+ |. |..+..++... ..++++++.+++..+.+++ .+....+.....+..+.......+.
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~~~ 207 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALTGGR 207 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHcCCC
Confidence 446778999999998 43 66667777775 3578999988888777754 3432212222112211000000114
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+|+++..... ..+..+.+.++++|+++.++
T Consensus 208 ~~d~v~~~~g~--~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 208 GVDVVYDPVGG--DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred CcEEEEECccH--HHHHHHHHhhccCCEEEEEc
Confidence 68997755443 36677889999999988665
No 403
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=95.55 E-value=0.082 Score=43.67 Aligned_cols=102 Identities=10% Similarity=0.031 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc-ccCCCCCCCCCC
Q 026506 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD-IQGQGFPDEFSG 180 (237)
Q Consensus 104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~ 180 (237)
....++++|+..|+ |. |..+..+++..+ .+++.+..+++..+.+++ .+....+.....+ +.........+.
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ 209 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLTGEK 209 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHhCCC
Confidence 45778999999985 44 777788888763 456667888888887754 4543212221112 111000000114
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
++|+++.... ...+..+.+.|+++|+++.++
T Consensus 210 ~~d~~i~~~~--~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 210 GVNLVLDCVG--GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred CceEEEECCc--hHHHHHHHHHhccCCeEEEEe
Confidence 6999885543 247788999999999998664
No 404
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=95.49 E-value=0.11 Score=43.17 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=62.1
Q ss_pred CCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 109 GCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 109 ~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
+.+|+..|+ |. |..+..+++..+. .++++++.+++..+.+++ .+....+... .+... .+......++|+++
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~~~~~~~-~~~~~-~i~~~~~~~~d~vl 222 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTG-LTVIATASRPESIAWVKE----LGADHVINHH-QDLAE-QLEALGIEPVDYIF 222 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC-cEEEEEcCChhhHHHHHh----cCCcEEEeCC-ccHHH-HHHhhCCCCCCEEE
Confidence 899999985 44 7777788888632 689999988888887754 4543212211 12211 01111124699977
Q ss_pred EeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 187 LDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
...+.. ..+..+.+.++++|+++.++
T Consensus 223 ~~~~~~-~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 223 CLTDTD-QHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred EccCcH-HHHHHHHHHhcCCCEEEEec
Confidence 554432 37888999999999988664
No 405
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=95.49 E-value=0.19 Score=40.73 Aligned_cols=96 Identities=23% Similarity=0.293 Sum_probs=59.7
Q ss_pred CCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506 105 ELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (237)
Q Consensus 105 ~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 182 (237)
.+.++.+++..|+ |. |..+..++... ..+++.++.++ ..+.+++ .+....+.....+... ......+
T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~-~~~~~~~----~g~~~~~~~~~~~~~~----~~~~~~~ 209 (309)
T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKAR--GARVIATASAA-NADFLRS----LGADEVIDYTKGDFER----AAAPGGV 209 (309)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEecch-hHHHHHH----cCCCEEEeCCCCchhh----ccCCCCc
Confidence 3778999999996 54 66677777775 35677777655 5555533 4432212211112211 1112468
Q ss_pred CEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 183 D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
|+++...+.. ....+.+.|+++|.++.++
T Consensus 210 d~v~~~~~~~--~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 210 DAVLDTVGGE--TLARSLALVKPGGRLVSIA 238 (309)
T ss_pred eEEEECCchH--HHHHHHHHHhcCcEEEEEc
Confidence 9988655544 6788889999999998665
No 406
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=95.38 E-value=0.11 Score=42.75 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=61.3
Q ss_pred CCCCCC-EEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 105 ELVPGC-LVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 105 ~~~~~~-~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
...++. +|+..|+ |+ |..+..++...+ .+++.+..+++..+.+++ .+....+.....+........ ++
T Consensus 141 ~~~~~~~~vlI~g~~g~vg~~~~~la~~~G--~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~---~~ 211 (323)
T TIGR02823 141 GLTPEDGPVLVTGATGGVGSLAVAILSKLG--YEVVASTGKAEEEDYLKE----LGASEVIDREDLSPPGKPLEK---ER 211 (323)
T ss_pred CCCCCCceEEEEcCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHh----cCCcEEEccccHHHHHHHhcC---CC
Confidence 367888 9999997 55 777788888863 467777666766666644 454321221111110001111 35
Q ss_pred CCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+|+++...... .+..+.+.|+++|+++.++.
T Consensus 212 ~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g~ 242 (323)
T TIGR02823 212 WAGAVDTVGGH--TLANVLAQLKYGGAVAACGL 242 (323)
T ss_pred ceEEEECccHH--HHHHHHHHhCCCCEEEEEcc
Confidence 89866544432 57888999999999987753
No 407
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=95.26 E-value=0.13 Score=41.16 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=63.9
Q ss_pred HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEccccCCCCCCC
Q 026506 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGFPDE 177 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~~~ 177 (237)
......++++|+..|. |. |..+..+++.. ..++++++.+++..+.+++ .+. ...+.....+..+......
T Consensus 98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 171 (288)
T smart00829 98 DLARLRPGESVLIHAAAGGVGQAAIQLAQHL--GAEVFATAGSPEKRDFLRE----LGIPDDHIFSSRDLSFADEILRAT 171 (288)
T ss_pred HHhCCCCCCEEEEecCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCChhheeeCCCccHHHHHHHHh
Confidence 3456788999999984 44 66777777765 3579999988988887754 354 2212221112111000000
Q ss_pred CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+..+|+++.... . ..+..+.+.++++|.++.++
T Consensus 172 ~~~~~d~vi~~~~-~-~~~~~~~~~l~~~g~~v~~g 205 (288)
T smart00829 172 GGRGVDVVLNSLA-G-EFLDASLRCLAPGGRFVEIG 205 (288)
T ss_pred CCCCcEEEEeCCC-H-HHHHHHHHhccCCcEEEEEc
Confidence 1145898775444 2 46778889999999998765
No 408
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=95.18 E-value=0.11 Score=42.77 Aligned_cols=101 Identities=14% Similarity=0.219 Sum_probs=62.1
Q ss_pred cCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCC-CCCCC
Q 026506 104 LELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSG 180 (237)
Q Consensus 104 ~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~ 180 (237)
....++.+||..|++ . |..+..+++..+ .+++++..+++..+.+++ .+.+..+.....+... .+. ...+.
T Consensus 134 ~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~~~ 206 (323)
T cd05282 134 LKLPPGDWVIQNAANSAVGRMLIQLAKLLG--FKTINVVRRDEQVEELKA----LGADEVIDSSPEDLAQ-RVKEATGGA 206 (323)
T ss_pred ccCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecChHHHHHHHh----cCCCEEecccchhHHH-HHHHHhcCC
Confidence 346789999999873 3 777777888763 578888777877777654 4543322222111111 011 01114
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+|+|+...... ......+.|+++|+++.++
T Consensus 207 ~~d~vl~~~g~~--~~~~~~~~l~~~g~~v~~g 237 (323)
T cd05282 207 GARLALDAVGGE--SATRLARSLRPGGTLVNYG 237 (323)
T ss_pred CceEEEECCCCH--HHHHHHHhhCCCCEEEEEc
Confidence 699987555443 3567788999999988654
No 409
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.16 E-value=0.061 Score=44.56 Aligned_cols=109 Identities=19% Similarity=0.176 Sum_probs=67.9
Q ss_pred EEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (237)
Q Consensus 111 ~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 190 (237)
+++|+.||.|++...+... +-..++++|+++.+.+.-+.|.. ....+|+.+....... ..+|+++..+|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~-~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP-KDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH-HT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc-ccceEEEeccC
Confidence 6899999999998777665 24678999999999999988853 5577787752211110 14999888776
Q ss_pred Chh------------------chHHHHHhcccCCCEEEEEeCCH------HHHHHHHHHHHh-cC
Q 026506 191 QPW------------------LAIPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL-NF 230 (237)
Q Consensus 191 ~~~------------------~~l~~~~~~L~~gG~l~~~~~~~------~~~~~~~~~l~~-~f 230 (237)
+.. ..+-++.+.++|.-.++=.++.. ...+.+++.|.+ |+
T Consensus 71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY 135 (335)
T PF00145_consen 71 CQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGY 135 (335)
T ss_dssp -TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTE
T ss_pred CceEeccccccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccce
Confidence 431 12344456677876665344332 345777777776 53
No 410
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.15 E-value=0.15 Score=41.97 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=57.4
Q ss_pred CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCCCCCCCCEE
Q 026506 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~~D~v 185 (237)
.+.+++.+|.|. |......+..++ .+|+++|.+++..+.++. .+.. +.. .+.. ..+ ..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~----~G~~----~~~~~~l~-~~l-----~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITE----MGLS----PFHLSELA-EEV-----GKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----cCCe----eecHHHHH-HHh-----CCCCEE
Confidence 578999999998 666666666653 589999999876655543 3422 111 1111 111 458998
Q ss_pred EEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 186 FLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
|...|... .-+...+.++||+.++-++
T Consensus 215 I~t~p~~~-i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 215 FNTIPALV-LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred EECCChhh-hhHHHHHcCCCCcEEEEEc
Confidence 88766432 4466778899988877443
No 411
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=95.13 E-value=0.06 Score=44.95 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=60.3
Q ss_pred CCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 107 VPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 107 ~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
.+++++|..|+ |. |..+..+++..+ .+++++. +++..+.+++ .|....+.....++.+ .+.....+.+|+
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G--~~v~~~~-~~~~~~~~~~----~g~~~v~~~~~~~~~~-~l~~~~~~~~d~ 224 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAG--YKVITTA-SPKNFDLVKS----LGADAVFDYHDPDVVE-DIRAATGGKLRY 224 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcC--CeEEEEE-CcccHHHHHh----cCCCEEEECCCchHHH-HHHHhcCCCeeE
Confidence 67899999996 34 777888888863 4677665 5666666644 4553322222112111 111111256999
Q ss_pred EEEeCCChhchHHHHHhcccC--CCEEEEEe
Q 026506 185 IFLDLPQPWLAIPSAKKMLKQ--DGILCSFS 213 (237)
Q Consensus 185 v~~~~~~~~~~l~~~~~~L~~--gG~l~~~~ 213 (237)
++.....+ ..+..+.+.|++ +|+++.++
T Consensus 225 vl~~~g~~-~~~~~~~~~l~~~~~g~~v~~g 254 (339)
T cd08249 225 ALDCISTP-ESAQLCAEALGRSGGGKLVSLL 254 (339)
T ss_pred EEEeeccc-hHHHHHHHHHhccCCCEEEEec
Confidence 77544332 378889999999 99888664
No 412
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.12 E-value=0.55 Score=38.23 Aligned_cols=94 Identities=23% Similarity=0.253 Sum_probs=62.8
Q ss_pred hcCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
.+...++++++..|+. . |..+..+++..+ .++++++.+++..+.+++ .|... .-.... .+.. +
T Consensus 127 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~-~~~~~~-----~~~~---~ 191 (305)
T cd08270 127 RGGPLLGRRVLVTGASGGVGRFAVQLAALAG--AHVVAVVGSPARAEGLRE----LGAAE-VVVGGS-----ELSG---A 191 (305)
T ss_pred HhCCCCCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCcE-EEeccc-----cccC---C
Confidence 3444468999999983 3 667777777753 578999888888887765 35432 111111 1222 4
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+|+++..... . .+....+.|+++|+++.++
T Consensus 192 ~~d~vl~~~g~-~-~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 192 PVDLVVDSVGG-P-QLARALELLAPGGTVVSVG 222 (305)
T ss_pred CceEEEECCCc-H-HHHHHHHHhcCCCEEEEEe
Confidence 68997754443 2 6788999999999999775
No 413
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.12 E-value=0.22 Score=40.73 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=26.5
Q ss_pred CCCCEEEE----eCCCh-hchHHHHHhcccCCCEEEEEeCC
Q 026506 180 GLADSIFL----DLPQP-WLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 180 ~~~D~v~~----~~~~~-~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
+.||+|+. |.... .+.+..+.+.|||||+.+-++|-
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPL 298 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccce
Confidence 46898854 44433 36889999999999999866553
No 414
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.11 E-value=0.09 Score=44.25 Aligned_cols=120 Identities=17% Similarity=0.177 Sum_probs=77.8
Q ss_pred cccHHHHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH-------HHHHcCC-CCcEEEE
Q 026506 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE-------DFERTGV-SSFVTVG 165 (237)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~-------~~~~~~~-~~~i~~~ 165 (237)
+...+.+.+.+.+.+++...|+|+|.|.+..+++... +...-+|+++...-.+.+.. ..+..|- .+.++.+
T Consensus 178 ~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 178 LEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred HHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 3334457788899999999999999999998888775 33566777775443333322 2333443 4557888
Q ss_pred EccccCCCCCCCCCCCCCEEEEeCC--Chh--chHHHHHhcccCCCEEEEEeC
Q 026506 166 VRDIQGQGFPDEFSGLADSIFLDLP--QPW--LAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 166 ~~d~~~~~~~~~~~~~~D~v~~~~~--~~~--~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++++.....-.......++|+++-. ++. .-+++++.-+++|-+++-..|
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccc
Confidence 8888752221112245888887643 221 235578888999999984443
No 415
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.05 E-value=0.21 Score=41.68 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=64.1
Q ss_pred HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEE-EccccCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVG-VRDIQGQGFPD 176 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~i~~~-~~d~~~~~~~~ 176 (237)
..+.+......+++.+|||. |...........+..++..++.+++..+...+.+.. .+ +++. ..|.. ...
T Consensus 118 a~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~----~~~~~~~~~~-~~~-- 190 (325)
T PRK08618 118 ATKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFN----TEIYVVNSAD-EAI-- 190 (325)
T ss_pred HHHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC----CcEEEeCCHH-HHH--
Confidence 44566656677999999998 554443332233457899999998887766655542 23 2222 22322 111
Q ss_pred CCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 177 ~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
...|+|+...+.....+. +.|+||-.+..++..
T Consensus 191 ---~~aDiVi~aT~s~~p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 191 ---EEADIIVTVTNAKTPVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred ---hcCCEEEEccCCCCcchH---HhcCCCcEEEecCCC
Confidence 358999988776654554 788998887666543
No 416
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=95.03 E-value=0.17 Score=42.17 Aligned_cols=104 Identities=11% Similarity=0.036 Sum_probs=64.2
Q ss_pred HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
..+.+......++..||||. |...+.......+..++...|.+++..+...+.+.+.+.. +.. ..|.. ...
T Consensus 119 aa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~--v~~-~~~~~-eav---- 190 (325)
T TIGR02371 119 AAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVP--VRA-ATDPR-EAV---- 190 (325)
T ss_pred HHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCc--EEE-eCCHH-HHh----
Confidence 44566656668999999998 6554333333445688999999999887766665544421 222 22332 112
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
...|+|+...+....++. .+.||||-.+..++.
T Consensus 191 -~~aDiVitaT~s~~P~~~--~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 191 -EGCDILVTTTPSRKPVVK--ADWVSEGTHINAIGA 223 (325)
T ss_pred -ccCCEEEEecCCCCcEec--HHHcCCCCEEEecCC
Confidence 358999887765544443 345688777766654
No 417
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=95.01 E-value=0.15 Score=40.81 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=62.9
Q ss_pred hcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 103 ~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
...++++++++..|+ |. |..+..+++..+ .++++++.+++..+.+++... .....+.....++.........+.
T Consensus 103 ~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
T cd05195 103 LARLQKGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATVGSEEKREFLRELGG--PVDHIFSSRDLSFADGILRATGGR 178 (293)
T ss_pred HhccCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhCC--CcceEeecCchhHHHHHHHHhCCC
Confidence 456789999999974 44 667777777753 578888888887777765310 011111111111111000000114
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+|+++...... .++.+.+.++++|+++.++
T Consensus 179 ~~d~vi~~~~~~--~~~~~~~~l~~~g~~v~~g 209 (293)
T cd05195 179 GVDVVLNSLSGE--LLRASWRCLAPFGRFVEIG 209 (293)
T ss_pred CceEEEeCCCch--HHHHHHHhcccCceEEEee
Confidence 689877555543 7888899999999988664
No 418
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=94.96 E-value=0.19 Score=41.62 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=59.4
Q ss_pred CCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 109 GCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 109 ~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
+.+||..|+ |. |..+.++++... ..+++++..+++..+.+++ .|.+..+.. ..+... .+.....+++|+|+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~-G~~vi~~~~~~~~~~~l~~----~g~~~~~~~-~~~~~~-~i~~~~~~~vd~vl 221 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLE----LGAHHVIDH-SKPLKA-QLEKLGLEAVSYVF 221 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHH----cCCCEEEEC-CCCHHH-HHHHhcCCCCCEEE
Confidence 899999986 33 667777777652 3578998888887777754 455332221 112111 11111124699977
Q ss_pred EeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 187 LDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..... ...+....+.|+++|+++.+.
T Consensus 222 ~~~~~-~~~~~~~~~~l~~~G~~v~~~ 247 (336)
T TIGR02817 222 SLTHT-DQHFKEIVELLAPQGRFALID 247 (336)
T ss_pred EcCCc-HHHHHHHHHHhccCCEEEEEc
Confidence 43322 236788899999999988653
No 419
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.95 E-value=0.33 Score=38.43 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=46.3
Q ss_pred CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH-------------------HHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE-------------------QRAASAREDFERTGVSSFVTVGVRD 168 (237)
Q Consensus 109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d 168 (237)
..+|+.+|||. |......+.+. +-++++.+|.+. ...+.+++++...+-.-.++.....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence 46899999997 77776666665 447888888531 2445556666554432224444433
Q ss_pred ccCCCCCCCCCCCCCEEEEeCCC
Q 026506 169 IQGQGFPDEFSGLADSIFLDLPQ 191 (237)
Q Consensus 169 ~~~~~~~~~~~~~~D~v~~~~~~ 191 (237)
+............||+|+.....
T Consensus 90 i~~~~~~~l~~~~~D~VvdaiD~ 112 (231)
T cd00755 90 LTPDNSEDLLGGDPDFVVDAIDS 112 (231)
T ss_pred cCHhHHHHHhcCCCCEEEEcCCC
Confidence 32111111111459997765443
No 420
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.93 E-value=0.36 Score=39.84 Aligned_cols=92 Identities=22% Similarity=0.199 Sum_probs=54.6
Q ss_pred CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
.+|..+|+|. |......+...+...+|+++|.+++..+.+++ .+... . ...+.. ... ...|+|++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~-~~~-----~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAA-EAV-----KGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHH-HHh-----cCCCEEEEC
Confidence 5799999887 44333333332222479999999987776654 34211 1 111111 111 458999998
Q ss_pred CCCh--hchHHHHHhcccCCCEEEEEeC
Q 026506 189 LPQP--WLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 189 ~~~~--~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.|.. ..+++.+...++++..++..+.
T Consensus 74 vp~~~~~~v~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 74 VPVGASGAVAAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence 8754 2456667777888887664443
No 421
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.92 E-value=0.13 Score=42.00 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=65.7
Q ss_pred CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEE
Q 026506 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (237)
Q Consensus 109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~ 187 (237)
+.+|..+|.|. |..+..++..+ .+.|+..|+|.+++......+ + .+++....+... +.+. -..+|+++-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f---~--~rv~~~~st~~~--iee~-v~~aDlvIg 237 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF---G--GRVHTLYSTPSN--IEEA-VKKADLVIG 237 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh---C--ceeEEEEcCHHH--HHHH-hhhccEEEE
Confidence 46788999998 88888888775 478999999999998877753 2 235555444432 2211 145898763
Q ss_pred e-----CCChhchHHHHHhcccCCCEEEEE
Q 026506 188 D-----LPQPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 188 ~-----~~~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
. ...|.-..++..+.||||+.++=+
T Consensus 238 aVLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 238 AVLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred EEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 2 234556788999999999999833
No 422
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.91 E-value=0.29 Score=37.11 Aligned_cols=94 Identities=22% Similarity=0.284 Sum_probs=55.6
Q ss_pred EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------cC-CC--------CcEEEEEccccCCC
Q 026506 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-------TG-VS--------SFVTVGVRDIQGQG 173 (237)
Q Consensus 111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~-~~--------~~i~~~~~d~~~~~ 173 (237)
+|..+|+|+ |.-...++... +.+|+.+|.+++.++.+++++.. .+ .. .++.+ ..|+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~--- 74 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLE--- 74 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGG---
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHH---
Confidence 477899998 54333333332 47999999999999888776654 11 11 12332 23332
Q ss_pred CCCCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEEeC
Q 026506 174 FPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 174 ~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.. ...|+|+...+... ++++++.+.++|+..|...+.
T Consensus 75 --~~--~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 75 --EA--VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp --GG--CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred --HH--hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 11 25899998887654 578888888888888875543
No 423
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.89 E-value=0.33 Score=36.29 Aligned_cols=100 Identities=23% Similarity=0.175 Sum_probs=57.4
Q ss_pred EEccCccHHHHHHHHHhCCCcEEEEE--eCCHHHHHH---HHHHHHHcCCCCcEEEEEccccCC-CCCCCCCCCCCEEEE
Q 026506 114 ESGTGSGSLTTSLARAVAPTGHVYTF--DFHEQRAAS---AREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSIFL 187 (237)
Q Consensus 114 diG~G~G~~~~~~~~~~~~~~~v~~v--D~~~~~~~~---a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~~D~v~~ 187 (237)
-+|=|-=.++..++...+...++++. |..++..+. +..++..+.-....-....|+.+. .........||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 35666667777888887545667666 444433332 224444332112122233455441 111112368999998
Q ss_pred eCCChh------------------chHHHHHhcccCCCEEEEEe
Q 026506 188 DLPQPW------------------LAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 188 ~~~~~~------------------~~l~~~~~~L~~gG~l~~~~ 213 (237)
+-|... .+++++.++|+++|.+.+.-
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 876432 46889999999999988654
No 424
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=94.88 E-value=0.44 Score=38.96 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=56.1
Q ss_pred CCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCC
Q 026506 105 ELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (237)
Q Consensus 105 ~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 182 (237)
...++.+++..|+ |. |..+..++...+ .++++++.+ +..+.+++ .+....+.....++. .....+..+
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g--~~v~~~~~~-~~~~~~~~----~g~~~~~~~~~~~~~---~~~~~~~~~ 209 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALG--AHVTGVCST-RNAELVRS----LGADEVIDYTTEDFV---ALTAGGEKY 209 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCH-HHHHHHHH----cCCCEeecCCCCCcc---hhccCCCCC
Confidence 3778999999997 44 667777777753 578888754 55555543 454221221111111 001112569
Q ss_pred CEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 183 D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
|+++................++++|+++.++
T Consensus 210 d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g 240 (319)
T cd08267 210 DVIFDAVGNSPFSLYRASLALKPGGRYVSVG 240 (319)
T ss_pred cEEEECCCchHHHHHHhhhccCCCCEEEEec
Confidence 9988654422212223333499999998765
No 425
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.85 E-value=0.22 Score=41.31 Aligned_cols=103 Identities=21% Similarity=0.213 Sum_probs=59.5
Q ss_pred HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
..+.+......+++.+|+|. |...........+..+++..+.+++..+...+.+...+.. +.. ..+.. ...
T Consensus 116 a~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~--~~~-~~~~~-~av---- 187 (314)
T PRK06141 116 AASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD--AEV-VTDLE-AAV---- 187 (314)
T ss_pred HHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc--eEE-eCCHH-HHH----
Confidence 44566666678999999998 6655443333335578999999988877666655443321 222 12221 111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..+|+|+...+....++.. +.++||-.+...+
T Consensus 188 -~~aDIVi~aT~s~~pvl~~--~~l~~g~~i~~ig 219 (314)
T PRK06141 188 -RQADIISCATLSTEPLVRG--EWLKPGTHLDLVG 219 (314)
T ss_pred -hcCCEEEEeeCCCCCEecH--HHcCCCCEEEeeC
Confidence 3589887655544333332 4567776554443
No 426
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=94.68 E-value=0.47 Score=38.67 Aligned_cols=97 Identities=15% Similarity=0.054 Sum_probs=63.3
Q ss_pred CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
.+|+.+|.|- |++....++..+....+++.|.+...++.+.+ .++.+ -...+... ... ...|+|++.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d---~~~~~~~~--~~~---~~aD~Viva 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID---ELTVAGLA--EAA---AEADLVIVA 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc---ccccchhh--hhc---ccCCEEEEe
Confidence 5789999988 66655555555666678999998888877765 34322 11112111 111 458999998
Q ss_pred CCCh--hchHHHHHhcccCCCEEEEEeCCHHH
Q 026506 189 LPQP--WLAIPSAKKMLKQDGILCSFSPCIEQ 218 (237)
Q Consensus 189 ~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~ 218 (237)
.|-. .++++++...|++|..+.=++.+...
T Consensus 72 vPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~ 103 (279)
T COG0287 72 VPIEATEEVLKELAPHLKKGAIVTDVGSVKSS 103 (279)
T ss_pred ccHHHHHHHHHHhcccCCCCCEEEecccccHH
Confidence 8744 35788888889999888755554433
No 427
>PRK06823 ornithine cyclodeaminase; Validated
Probab=94.65 E-value=0.26 Score=40.91 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=65.7
Q ss_pred HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (237)
..+.+......++..+|||. +..-........+-.+|...+.+++..+...+.+...+.. +.. ..+.. ...
T Consensus 119 a~~~La~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~--v~~-~~~~~-~av---- 190 (315)
T PRK06823 119 VARLLAPQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFA--VNT-TLDAA-EVA---- 190 (315)
T ss_pred HHHHhcCCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCc--EEE-ECCHH-HHh----
Confidence 45566666678999999999 6655555544556689999999999888766666544321 222 22222 111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
...|+|+...+....+++. +.|+||-.+..++..
T Consensus 191 -~~ADIV~taT~s~~P~~~~--~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 191 -HAANLIVTTTPSREPLLQA--EDIQPGTHITAVGAD 224 (315)
T ss_pred -cCCCEEEEecCCCCceeCH--HHcCCCcEEEecCCC
Confidence 4589988766554444432 456777776655543
No 428
>PRK13699 putative methylase; Provisional
Probab=94.60 E-value=0.056 Score=42.66 Aligned_cols=66 Identities=24% Similarity=0.287 Sum_probs=42.9
Q ss_pred EEEEccccC--CCCCCCCCCCCCEEEEeCCCh--------------------hchHHHHHhcccCCCEEEEEeCCHHHHH
Q 026506 163 TVGVRDIQG--QGFPDEFSGLADSIFLDLPQP--------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQ 220 (237)
Q Consensus 163 ~~~~~d~~~--~~~~~~~~~~~D~v~~~~~~~--------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 220 (237)
++..+|..+ ..+++ +++|+|+.|+|-. ...++++.++|||||.++++.... +..
T Consensus 3 ~l~~gD~le~l~~lpd---~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-~~~ 78 (227)
T PRK13699 3 RFILGNCIDVMARFPD---NAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN-RVD 78 (227)
T ss_pred eEEechHHHHHHhCCc---cccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-cHH
Confidence 345566654 23444 6788888877631 146788899999999988765432 245
Q ss_pred HHHHHHHh-cCcc
Q 026506 221 RSCESLRL-NFTG 232 (237)
Q Consensus 221 ~~~~~l~~-~f~~ 232 (237)
.+...+++ +|.-
T Consensus 79 ~~~~al~~~GF~l 91 (227)
T PRK13699 79 RFMAAWKNAGFSV 91 (227)
T ss_pred HHHHHHHHCCCEE
Confidence 56666766 7753
No 429
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=94.60 E-value=0.15 Score=42.44 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=57.9
Q ss_pred cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCH----HHHHHHHHHHHHcCCCCcEEEEEc---cccCCCC
Q 026506 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHE----QRAASAREDFERTGVSSFVTVGVR---DIQGQGF 174 (237)
Q Consensus 104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~----~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~~~ 174 (237)
....++.+||..|+ |+ |..+.+++...+ .+++++..++ +..+.+++ .+.+..+..... +... .+
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~i 214 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLG--IKTINVVRDRPDLEELKERLKA----LGADHVLTEEELRSLLATE-LL 214 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcC--CeEEEEEcCCCcchhHHHHHHh----cCCCEEEeCcccccccHHH-HH
Confidence 45688999999986 44 777788888864 3455544333 34454433 454332222111 1111 01
Q ss_pred CCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 175 ~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.....+.+|+|+...... .+..+.+.|+++|+++.++
T Consensus 215 ~~~~~~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 215 KSAPGGRPKLALNCVGGK--SATELARLLSPGGTMVTYG 251 (341)
T ss_pred HHHcCCCceEEEECcCcH--hHHHHHHHhCCCCEEEEEe
Confidence 111112689987544432 4567889999999998765
No 430
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.58 E-value=0.072 Score=41.65 Aligned_cols=83 Identities=12% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccccCCCCCCCC--CCCCC
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPDEF--SGLAD 183 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~--~~~~D 183 (237)
.+..++||||.|.-..--.+-.+. =+-+.++.|+++..++.|+.++..+ ++...|+.....-.+.-++... .+.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 456789999887643221111111 1257899999999999999998877 5665566654322222233221 25799
Q ss_pred EEEEeCC
Q 026506 184 SIFLDLP 190 (237)
Q Consensus 184 ~v~~~~~ 190 (237)
...+|+|
T Consensus 156 ~tlCNPP 162 (292)
T COG3129 156 ATLCNPP 162 (292)
T ss_pred eEecCCC
Confidence 9999887
No 431
>PTZ00357 methyltransferase; Provisional
Probab=94.54 E-value=0.29 Score=44.38 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=62.5
Q ss_pred EEEEEccCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHH-HcCC-------CCcEEEEEccccCCCCCC---
Q 026506 111 LVLESGTGSGSLTTSLARA---VAPTGHVYTFDFHEQRAASAREDFE-RTGV-------SSFVTVGVRDIQGQGFPD--- 176 (237)
Q Consensus 111 ~vldiG~G~G~~~~~~~~~---~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~-------~~~i~~~~~d~~~~~~~~--- 176 (237)
.|+.+|+|-|-+....++. .+-..+++++|-|++.....+.+.. ...+ .++++++..|+.....+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999886555443 3445689999999775444443321 1122 345899999998733221
Q ss_pred -----CCCCCCCEEEEeCC-------ChhchHHHHHhcccC----CCE
Q 026506 177 -----EFSGLADSIFLDLP-------QPWLAIPSAKKMLKQ----DGI 208 (237)
Q Consensus 177 -----~~~~~~D~v~~~~~-------~~~~~l~~~~~~L~~----gG~ 208 (237)
...+++|+|+...- -..+.|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 01136999985321 223578888888876 776
No 432
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=94.50 E-value=0.51 Score=38.93 Aligned_cols=97 Identities=23% Similarity=0.309 Sum_probs=60.5
Q ss_pred cCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 104 ~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
....++++++..|+ |. |..+..+++..+ .+++++.. +...+.+++ .|... +.....+....... .+.
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~v~~~~~-~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~---~~~ 203 (331)
T cd08273 135 AKVLTGQRVLIHGASGGVGQALLELALLAG--AEVYGTAS-ERNHAALRE----LGATP-IDYRTKDWLPAMLT---PGG 203 (331)
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeC-HHHHHHHHH----cCCeE-EcCCCcchhhhhcc---CCC
Confidence 46788999999996 44 667777777753 57887776 766666644 34211 11111122111011 146
Q ss_pred CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+|+++...... .+....+.++++|+++.++
T Consensus 204 ~d~vl~~~~~~--~~~~~~~~l~~~g~~v~~g 233 (331)
T cd08273 204 VDVVFDGVGGE--SYEESYAALAPGGTLVCYG 233 (331)
T ss_pred ceEEEECCchH--HHHHHHHHhcCCCEEEEEc
Confidence 89977554443 3788899999999998665
No 433
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.50 E-value=0.025 Score=47.94 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=52.4
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEcccc
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQ 170 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~ 170 (237)
.++|+.|.|+.||.|-+++.++.. .+.|++.|.++++++..+.++..+.++.. +.....|+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAK 309 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHH
Confidence 578999999999999999887776 38999999999999999999988777654 676666554
No 434
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.46 E-value=0.2 Score=42.55 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=58.0
Q ss_pred CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
++.+|+.+|+|. |..+...+..++ .+|+++|.+++.++.+...+ +. . +.....+.. .+... -..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~---g~-~-v~~~~~~~~--~l~~~-l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEF---GG-R-IHTRYSNAY--EIEDA-VKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhc---Cc-e-eEeccCCHH--HHHHH-HccCCEEE
Confidence 456799999998 777777777764 47999999988776655432 21 1 211111111 01110 13589988
Q ss_pred EeCCC-----hhchHHHHHhcccCCCEEEEEe
Q 026506 187 LDLPQ-----PWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 187 ~~~~~-----~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
...+. +.-.-+...+.++|++.++-++
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 65421 2223477778889998887544
No 435
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.46 E-value=0.75 Score=34.22 Aligned_cols=95 Identities=15% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC-CCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~~D~v 185 (237)
.++.+|+-+||=+-...+ .+...+..+++..|++...-. .+ .. ++..-|..+ ..++....+.+|+|
T Consensus 24 ~~~~~iaclstPsl~~~l--~~~~~~~~~~~Lle~D~RF~~--------~~--~~-~F~fyD~~~p~~~~~~l~~~~d~v 90 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEAL--KKESKPRIQSFLLEYDRRFEQ--------FG--GD-EFVFYDYNEPEELPEELKGKFDVV 90 (162)
T ss_pred CCCCEEEEEeCcHHHHHH--HhhcCCCccEEEEeecchHHh--------cC--Cc-ceEECCCCChhhhhhhcCCCceEE
Confidence 456899999887755443 332234578999999764332 22 11 234445443 23343334789999
Q ss_pred EEeCCChh-----chHHHHHhcccCCCEEEEEeC
Q 026506 186 FLDLPQPW-----LAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 186 ~~~~~~~~-----~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++|+|=-. .+.+.+..++++++.+++..+
T Consensus 91 v~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 91 VIDPPFLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 99998321 122444455578788875543
No 436
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.45 E-value=0.22 Score=43.47 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=59.9
Q ss_pred CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
-.|.+|+.+|+|. |......+..+ ..+|+++|.++.....+.. .|. ++. ++.+ .+ ...|+|
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~----~G~----~~~--~lee-ll-----~~ADIV 313 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAM----EGY----QVV--TLED-VV-----ETADIF 313 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHh----cCc----eec--cHHH-HH-----hcCCEE
Confidence 4689999999998 66666666654 3589999988776543332 232 211 2211 11 458999
Q ss_pred EEeCCChhchH-HHHHhcccCCCEEEEEeCC
Q 026506 186 FLDLPQPWLAI-PSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 186 ~~~~~~~~~~l-~~~~~~L~~gG~l~~~~~~ 215 (237)
+....... ++ ....+.||||++|+-.+-.
T Consensus 314 I~atGt~~-iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 314 VTATGNKD-IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EECCCccc-ccCHHHHhccCCCcEEEEcCCC
Confidence 88765443 55 5889999999999977654
No 437
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=94.39 E-value=0.24 Score=40.76 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=60.3
Q ss_pred CCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc-cCCCCCCCCCCCCCEE
Q 026506 109 GCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI-QGQGFPDEFSGLADSI 185 (237)
Q Consensus 109 ~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~~~D~v 185 (237)
+.+|+..|+ |. |..+..+++..+ .++++++.+++..+.+++ .+.+..+.....+. ....... +.+|+|
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~---~~~d~v 217 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLG--YTVVALTGKEEQADYLKS----LGASEVLDREDLLDESKKPLLK---ARWAGA 217 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCcEEEcchhHHHHHHHHhcC---CCccEE
Confidence 568999987 55 777777788763 468999999988887754 45432111111000 0011111 458987
Q ss_pred EEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+..... ..+..+.+.++++|+++.++.
T Consensus 218 i~~~~~--~~~~~~~~~l~~~g~~v~~g~ 244 (325)
T cd05280 218 IDTVGG--DVLANLLKQTKYGGVVASCGN 244 (325)
T ss_pred EECCch--HHHHHHHHhhcCCCEEEEEec
Confidence 744433 378899999999999987753
No 438
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.36 E-value=0.57 Score=42.18 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=60.7
Q ss_pred CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCCCCCCCCCEEEE
Q 026506 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFL 187 (237)
Q Consensus 110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~D~v~~ 187 (237)
++++.+|+|. |......+.. ....++.+|.|++..+.+++ .+ .....+|..+.. +....-..+|.++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 6788888888 5554444333 23579999999999888875 23 667889987622 11111257898887
Q ss_pred eCCChhch--HHHHHhcccCCCEEEEEeCCH
Q 026506 188 DLPQPWLA--IPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 188 ~~~~~~~~--l~~~~~~L~~gG~l~~~~~~~ 216 (237)
..++..+. +-...+...|...++.-....
T Consensus 488 ~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 488 TIPNGYEAGEIVASAREKRPDIEIIARAHYD 518 (558)
T ss_pred EcCChHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 76654432 333345556777777555433
No 439
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.32 E-value=0.2 Score=38.76 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=46.0
Q ss_pred CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC-------------------HHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH-------------------EQRAASAREDFERTGVSSFVTVGVR 167 (237)
Q Consensus 108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~-------------------~~~~~~a~~~~~~~~~~~~i~~~~~ 167 (237)
...+|+.+|||. |......+... +-++++.+|.+ ....+.+.+++....-.-.++....
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 457999999997 76665555554 34789999865 2345556666654432222443333
Q ss_pred cccCCCCCCCCCCCCCEEEEeCC
Q 026506 168 DIQGQGFPDEFSGLADSIFLDLP 190 (237)
Q Consensus 168 d~~~~~~~~~~~~~~D~v~~~~~ 190 (237)
.+....+.+ .-..+|+|+....
T Consensus 99 ~i~~~~~~~-~~~~~D~Vi~~~d 120 (202)
T TIGR02356 99 RVTAENLEL-LINNVDLVLDCTD 120 (202)
T ss_pred cCCHHHHHH-HHhCCCEEEECCC
Confidence 332211111 1146999876544
No 440
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=94.23 E-value=0.36 Score=39.41 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=61.3
Q ss_pred cCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 104 LELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 104 ~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
....++.+++..|+. . |..++.++... ..++++++.+++..+.+++ .+.+..+.....+.............
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWA--GARVIATASSAEGAELVRQ----AGADAVFNYRAEDLADRILAATAGQG 213 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHHcCCCc
Confidence 567789999999863 3 55566666664 3679999988887777654 35432122211111110000001146
Q ss_pred CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+|+++...... .++...+.++++|.++.++
T Consensus 214 ~d~vi~~~~~~--~~~~~~~~l~~~g~~v~~~ 243 (325)
T cd08253 214 VDVIIEVLANV--NLAKDLDVLAPGGRIVVYG 243 (325)
T ss_pred eEEEEECCchH--HHHHHHHhhCCCCEEEEEe
Confidence 99988655443 4567778899999888664
No 441
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=94.16 E-value=0.27 Score=41.01 Aligned_cols=94 Identities=22% Similarity=0.285 Sum_probs=56.5
Q ss_pred CCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 108 PGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 108 ~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
++++|+..|. |. |..+..+++..+ .+++++..+ +..+.+++ .+....+.....+.. ..+.. .+.+|++
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~-~~~~~~~~----~g~~~~~~~~~~~~~-~~l~~--~~~vd~v 231 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWG--AHVTTTCST-DAIPLVKS----LGADDVIDYNNEDFE-EELTE--RGKFDVI 231 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCc-chHHHHHH----hCCceEEECCChhHH-HHHHh--cCCCCEE
Confidence 4899999984 55 777777777764 467766543 44444433 454321221111111 11111 1469998
Q ss_pred EEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 186 FLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+...... .++.+.+.|+++|+++.++
T Consensus 232 i~~~g~~--~~~~~~~~l~~~G~~v~~g 257 (350)
T cd08248 232 LDTVGGD--TEKWALKLLKKGGTYVTLV 257 (350)
T ss_pred EECCChH--HHHHHHHHhccCCEEEEec
Confidence 8655543 7888999999999999764
No 442
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=94.15 E-value=0.3 Score=39.97 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=61.2
Q ss_pred hcCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
.....++.+++..|+. . |..+..++... ..+++.++.++...+.+++ .+....+.....+............
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAA--GATVIATTRTSEKRDALLA----LGAAHVIVTDEEDLVAEVLRITGGK 212 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHhCCC
Confidence 3456788999999873 3 55566666664 3678888888877776644 3432212211111110000000113
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.+|+++..... .....+.+.++++|+++.++
T Consensus 213 ~~d~vi~~~~~--~~~~~~~~~l~~~g~~v~~g 243 (328)
T cd08268 213 GVDVVFDPVGG--PQFAKLADALAPGGTLVVYG 243 (328)
T ss_pred CceEEEECCch--HhHHHHHHhhccCCEEEEEE
Confidence 58998865554 35778889999999998665
No 443
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=94.11 E-value=0.33 Score=33.74 Aligned_cols=105 Identities=22% Similarity=0.212 Sum_probs=64.1
Q ss_pred EEEEEccCc-cHHHHHHHHHhCCCcEEE-EEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 111 LVLESGTGS-GSLTTSLARAVAPTGHVY-TFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~-~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
+|..+|+|. |.....-.....+..++. .+|.+++..+.+.+. .+. . ...|..+ -+.. ..+|+|++.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~---~~~----~-~~~~~~~-ll~~---~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK---YGI----P-VYTDLEE-LLAD---EDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---TTS----E-EESSHHH-HHHH---TTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH---hcc----c-chhHHHH-HHHh---hcCCEEEEe
Confidence 678899988 443332333333445555 669998877766443 443 2 3334332 1221 469999998
Q ss_pred CCChhchHHHHHhcccCCCEEEEEeCC---HHHHHHHHHHHHh
Q 026506 189 LPQPWLAIPSAKKMLKQDGILCSFSPC---IEQVQRSCESLRL 228 (237)
Q Consensus 189 ~~~~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~l~~ 228 (237)
.+... -.+.+...|+.|--+++--|. .++.+++.+..++
T Consensus 70 tp~~~-h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 70 TPPSS-HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp SSGGG-HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred cCCcc-hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 87654 567777788888777766554 4556666666655
No 444
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.10 E-value=1 Score=35.21 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CC----C--CCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FP----D--EFS 179 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~----~--~~~ 179 (237)
.+.+|+..|++ |.++..+++.+ ....+|++++.+++..+.+.+.....+ + +.+...|+.+.. .. . ...
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--N-IHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--C-eEEEECCCCCHHHHHHHHHHHHHHh
Confidence 35789999875 44444444333 234689999998877766544433222 3 777788876511 00 0 001
Q ss_pred CCCCEEEEeCCCh----------------------hchHHHHHhcccCCCEEEEEeCC
Q 026506 180 GLADSIFLDLPQP----------------------WLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 180 ~~~D~v~~~~~~~----------------------~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
+.+|.++.+.... ..+++.+.+.++++|.+++++..
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 4578888765421 12355666777788888877643
No 445
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=94.09 E-value=0.37 Score=38.96 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=63.7
Q ss_pred HhcCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCC
Q 026506 102 MYLELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 179 (237)
......++++++..|.. . |..+..+++.. ..++++++.+++..+.+++ .+.+..+.....+..........+
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~~ 187 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLK--GAEIYATASSDDKLEYLKQ----LGVPHVINYVEEDFEEEIMRLTGG 187 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHcCC
Confidence 45667889999987543 3 55666777776 3679999888887777754 455332222222221100000111
Q ss_pred CCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 180 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
..+|+++.... . ..+....+.++++|+++.++
T Consensus 188 ~~~d~v~~~~~-~-~~~~~~~~~l~~~g~~v~~~ 219 (303)
T cd08251 188 RGVDVVINTLS-G-EAIQKGLNCLAPGGRYVEIA 219 (303)
T ss_pred CCceEEEECCc-H-HHHHHHHHHhccCcEEEEEe
Confidence 46898775443 2 36778889999999988664
No 446
>PRK07589 ornithine cyclodeaminase; Validated
Probab=94.08 E-value=0.33 Score=40.84 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=62.8
Q ss_pred HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccccCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDE 177 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~ 177 (237)
..+++......++..+|||. +..-........+-.+|...+.+++..+...+.+...+ +++.. .|.. ...
T Consensus 120 a~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~----~~v~~~~~~~-~av--- 191 (346)
T PRK07589 120 AAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG----LRIVACRSVA-EAV--- 191 (346)
T ss_pred HHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC----CcEEEeCCHH-HHH---
Confidence 44556556667899999999 66555444444566899999999998877666665433 22222 2322 112
Q ss_pred CCCCCCEEEEeCCChh--chHHHHHhcccCCCEEEEEeC
Q 026506 178 FSGLADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~ 214 (237)
...|+|+...+... .++.. +.|+||-.+..++.
T Consensus 192 --~~ADIIvtaT~S~~~~Pvl~~--~~lkpG~hV~aIGs 226 (346)
T PRK07589 192 --EGADIITTVTADKTNATILTD--DMVEPGMHINAVGG 226 (346)
T ss_pred --hcCCEEEEecCCCCCCceecH--HHcCCCcEEEecCC
Confidence 35898887654322 23332 46677776665543
No 447
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.06 E-value=1.2 Score=32.38 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=55.3
Q ss_pred CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
..+.+++.+|+|. |......+...+ ...++.+|.+++..+...+...... +.....|..+ . . ..+|+|
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~--~-~---~~~Dvv 85 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEE--L-L---AEADLI 85 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhh--c-c---ccCCEE
Confidence 4467999999875 332222222222 3579999999877665544332111 1111222211 1 1 568999
Q ss_pred EEeCCChhc---hHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh
Q 026506 186 FLDLPQPWL---AIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (237)
Q Consensus 186 ~~~~~~~~~---~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 228 (237)
+...+.... ........++++..++-.+..... ..+.+.+++
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~-~~l~~~~~~ 130 (155)
T cd01065 86 INTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLE-TPLLKEARA 130 (155)
T ss_pred EeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCC-CHHHHHHHH
Confidence 887654331 111112346777766644332221 155555555
No 448
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.95 E-value=0.47 Score=39.63 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=69.3
Q ss_pred CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC-CCCEEEEe
Q 026506 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG-LADSIFLD 188 (237)
Q Consensus 110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~~D~v~~~ 188 (237)
.+++|+.||.|++..-+... + -.-+.++|+++.+++.-+.|... -.+...|+.+..... ... .+|+++-.
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~-~~~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEA-LRKSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhh-ccccCCCEEEeC
Confidence 58999999999998666654 2 46788999999999988887532 233445554311111 112 68998876
Q ss_pred CCChh------------------chHHHHHhcccCCCEEEEEeCCH-----HHHHHHHHHHHh-cCc
Q 026506 189 LPQPW------------------LAIPSAKKMLKQDGILCSFSPCI-----EQVQRSCESLRL-NFT 231 (237)
Q Consensus 189 ~~~~~------------------~~l~~~~~~L~~gG~l~~~~~~~-----~~~~~~~~~l~~-~f~ 231 (237)
+|+.. --+.++...++|.-.++=.++.. ...+.+.+.|++ |+.
T Consensus 75 pPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 75 PPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred CCCcchhhcCcccCCcCccceeeHHHHHHHHhhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 66431 13556677778832222112222 245667777777 664
No 449
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=93.94 E-value=0.39 Score=39.13 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=77.4
Q ss_pred HHhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccCCCCCCC
Q 026506 101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDE 177 (237)
Q Consensus 101 ~~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~~~~ 177 (237)
.+...++.|++|+.-|+ |. |.+.-++++.+ .+.|++.=-+++.+...+.. .|.+..+++... |.. ..+...
T Consensus 146 ~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~--Gc~VVGsaGS~EKv~ll~~~---~G~d~afNYK~e~~~~-~aL~r~ 219 (343)
T KOG1196|consen 146 YEICSPKKGETVFVSAASGAVGQLVGQFAKLM--GCYVVGSAGSKEKVDLLKTK---FGFDDAFNYKEESDLS-AALKRC 219 (343)
T ss_pred HHhcCCCCCCEEEEeeccchhHHHHHHHHHhc--CCEEEEecCChhhhhhhHhc---cCCccceeccCccCHH-HHHHHh
Confidence 34556788998887765 44 88899999987 36899998899999988875 466665777665 443 222223
Q ss_pred CCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEeCC
Q 026506 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
...+.|+-|.|.... .++.+...|+..|++++-+..
T Consensus 220 ~P~GIDiYfeNVGG~--~lDavl~nM~~~gri~~CG~I 255 (343)
T KOG1196|consen 220 FPEGIDIYFENVGGK--MLDAVLLNMNLHGRIAVCGMI 255 (343)
T ss_pred CCCcceEEEeccCcH--HHHHHHHhhhhccceEeeeee
Confidence 336799988887754 678888889999998865543
No 450
>PRK11524 putative methyltransferase; Provisional
Probab=93.83 E-value=0.12 Score=42.29 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=42.7
Q ss_pred EEEEEccccC--CCCCCCCCCCCCEEEEeCCCh---------------------hchHHHHHhcccCCCEEEEEeCCHHH
Q 026506 162 VTVGVRDIQG--QGFPDEFSGLADSIFLDLPQP---------------------WLAIPSAKKMLKQDGILCSFSPCIEQ 218 (237)
Q Consensus 162 i~~~~~d~~~--~~~~~~~~~~~D~v~~~~~~~---------------------~~~l~~~~~~L~~gG~l~~~~~~~~~ 218 (237)
..+..+|..+ ..++. +++|+|+.|+|-. ...+..+.++|||||.+++.... ..
T Consensus 9 ~~i~~gD~~~~l~~l~~---~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~-~~ 84 (284)
T PRK11524 9 KTIIHGDALTELKKIPS---ESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST-EN 84 (284)
T ss_pred CEEEeccHHHHHHhccc---CcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc-hh
Confidence 4567777765 23443 6899999988721 14788999999999999976543 23
Q ss_pred HHHHHHHHHhcCc
Q 026506 219 VQRSCESLRLNFT 231 (237)
Q Consensus 219 ~~~~~~~l~~~f~ 231 (237)
+..+...++.+|.
T Consensus 85 ~~~~~~~~~~~f~ 97 (284)
T PRK11524 85 MPFIDLYCRKLFT 97 (284)
T ss_pred hhHHHHHHhcCcc
Confidence 3333334443553
No 451
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.83 E-value=0.11 Score=45.20 Aligned_cols=104 Identities=12% Similarity=0.186 Sum_probs=62.8
Q ss_pred CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCC----HHHHHHHHHHHHHcCCCCcEEEEEccccC--CCCCCCCCCCCC
Q 026506 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFH----EQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLAD 183 (237)
Q Consensus 110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~----~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~~D 183 (237)
..|+|+.+|.|++++++... .|++...- ++.+...-+ .|+-. .--|..+ ..+| ..||
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIyd----RGLIG----~yhDWCE~fsTYP----RTYD 429 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYD----RGLIG----VYHDWCEAFSTYP----RTYD 429 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhh----cccch----hccchhhccCCCC----cchh
Confidence 47999999999999887653 25555433 333333333 23221 2224432 2233 6799
Q ss_pred EEEEeCC--------ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 184 SIFLDLP--------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 184 ~v~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
+|-.+.- ....++-++.|+|+|+|.++ +-...+-+.++.+.++. .|.
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~i-iRD~~~vl~~v~~i~~~lrW~ 485 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVI-IRDTVDVLEKVKKIAKSLRWE 485 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEE-EeccHHHHHHHHHHHHhCcce
Confidence 9754321 22357889999999999988 44445566666666665 443
No 452
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.70 E-value=0.54 Score=35.42 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=43.8
Q ss_pred EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH------------------HHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE------------------QRAASAREDFERTGVSSFVTVGVRDIQG 171 (237)
Q Consensus 111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~------------------~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 171 (237)
+|+.+|||. |......+.+. +-.+++.+|.+. ...+.+++++.+.+-.-.+......+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 478999997 66555555554 346788888653 3455556666554432224444444332
Q ss_pred CCCCCCCCCCCCEEEEeCCC
Q 026506 172 QGFPDEFSGLADSIFLDLPQ 191 (237)
Q Consensus 172 ~~~~~~~~~~~D~v~~~~~~ 191 (237)
..... .-..+|+|+.....
T Consensus 80 ~~~~~-~l~~~DlVi~~~d~ 98 (174)
T cd01487 80 NNLEG-LFGDCDIVVEAFDN 98 (174)
T ss_pred hhHHH-HhcCCCEEEECCCC
Confidence 11111 11469998866443
No 453
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.68 E-value=1.1 Score=41.03 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=63.0
Q ss_pred CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC-CCCCCCCCCEEE
Q 026506 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFSGLADSIF 186 (237)
Q Consensus 109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~D~v~ 186 (237)
..+|+.+|+|. |......+... ...++++|.|++.++.+++ .| ..+..+|..+... ....-..+|.++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv 469 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLI 469 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHHHHHhcCCCcCCEEE
Confidence 36899999998 66655555442 3579999999999998876 24 5678889876322 111125789988
Q ss_pred EeCCChhch--HHHHHhcccCCCEEEEEeCCH
Q 026506 187 LDLPQPWLA--IPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 187 ~~~~~~~~~--l~~~~~~L~~gG~l~~~~~~~ 216 (237)
+...++... +-...+.+.|.-.+++-....
T Consensus 470 v~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~ 501 (621)
T PRK03562 470 NAIDDPQTSLQLVELVKEHFPHLQIIARARDV 501 (621)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 877665432 223344556776666544433
No 454
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.64 E-value=0.026 Score=39.98 Aligned_cols=64 Identities=22% Similarity=0.378 Sum_probs=40.7
Q ss_pred EEEEEccccCCCCCCCCCCCCCEEEEeCCCh------h--chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHHHh-cCc
Q 026506 162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP------W--LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (237)
Q Consensus 162 i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~------~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~-~f~ 231 (237)
+++..+|+.+ .++. ....+|+|++|.-.| | ++++.+.+.++|||++..|+.. ..+.+.|.+ ||.
T Consensus 33 L~L~~gDa~~-~l~~-l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a----~~Vr~~L~~aGF~ 105 (124)
T PF05430_consen 33 LTLWFGDARE-MLPQ-LDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA----GAVRRALQQAGFE 105 (124)
T ss_dssp EEEEES-HHH-HHHH-B-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B----HHHHHHHHHCTEE
T ss_pred EEEEEcHHHH-HHHh-CcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech----HHHHHHHHHcCCE
Confidence 5667788764 1211 116799999986322 2 6899999999999999988763 336667777 775
No 455
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.57 E-value=0.16 Score=36.97 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=60.3
Q ss_pred EEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc------ccC-CCCCCCCCCCCC
Q 026506 112 VLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD------IQG-QGFPDEFSGLAD 183 (237)
Q Consensus 112 vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d------~~~-~~~~~~~~~~~D 183 (237)
|+.+|+|. |.+..+.+.. ...+|..+..++ .++..++. + +.+...+ ... ...+......+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKEQ----G----LTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHHH----C----EEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhhe----e----EEEEecccceecccccccCcchhccCCCc
Confidence 67888888 6655555544 246899998866 66654442 3 2222111 000 001100126799
Q ss_pred EEEEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHHHH
Q 026506 184 SIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCES 225 (237)
Q Consensus 184 ~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~ 225 (237)
+||+..... .+.++.+.+.+.++..++++.......+.+.+.
T Consensus 70 ~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~ 113 (151)
T PF02558_consen 70 LVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEY 113 (151)
T ss_dssp EEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCH
T ss_pred EEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHH
Confidence 999887543 357888999999998888776655554444433
No 456
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.50 E-value=0.22 Score=38.78 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=50.5
Q ss_pred HHHHhcCCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC
Q 026506 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (237)
Q Consensus 99 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 171 (237)
.++..++.-..+.|.+||.|+|+.+..+... +..+...+|.++.+..-.+...+. .+.+..++..|+..
T Consensus 41 KIvK~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EA--a~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 41 KIVKKAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEA--APGKLRIHHGDVLR 109 (326)
T ss_pred HHHHhccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhc--CCcceEEeccccce
Confidence 4666677677789999999999999998876 346788999988876665554432 22347777777754
No 457
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.49 E-value=0.3 Score=41.58 Aligned_cols=78 Identities=18% Similarity=0.055 Sum_probs=50.5
Q ss_pred CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
.+||.||||. |....+.+.+- ...+|+..|.+.+..+.+.... .. +++....|+.+..-....-..+|+|+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~----~~-~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI----GG-KVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc----cc-cceeEEecccChHHHHHHHhcCCEEEEe
Confidence 5799999987 55555554442 3379999999988888776642 11 4788888887621111111457998876
Q ss_pred CCChh
Q 026506 189 LPQPW 193 (237)
Q Consensus 189 ~~~~~ 193 (237)
.|.+.
T Consensus 76 ~p~~~ 80 (389)
T COG1748 76 APPFV 80 (389)
T ss_pred CCchh
Confidence 66543
No 458
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=1.6 Score=34.82 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=68.3
Q ss_pred cCCCCCCEEEEEccCccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 104 LELVPGCLVLESGTGSGSLTTSLARAVA---PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 104 ~~~~~~~~vldiG~G~G~~~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
.....+.+.+|+|+|+...+..+...+. ...+++.+|++...++...+.+...-..-.+.-..+|... .+....++
T Consensus 74 a~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La~~~~~ 152 (321)
T COG4301 74 ASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALAELPRG 152 (321)
T ss_pred HHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHhcccCC
Confidence 3445578999999999988877766552 2368999999999887655544332212225666777753 22221112
Q ss_pred CCCEE-EEe-------CCChhchHHHHHhcccCCCEEEEEeC
Q 026506 181 LADSI-FLD-------LPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 181 ~~D~v-~~~-------~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
+--++ |+. +..-..++.++...|+||-.+.+-+.
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 22222 221 12223589999999999999885443
No 459
>PRK06940 short chain dehydrogenase; Provisional
Probab=93.41 E-value=0.61 Score=37.74 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=60.0
Q ss_pred CEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CC----C-CCCCCCC
Q 026506 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FP----D-EFSGLAD 183 (237)
Q Consensus 110 ~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~----~-~~~~~~D 183 (237)
..++..|+ |+++.++++.+....+|+.++.+++.++...+.+...+ ..+.+...|+.+.. .. . ...+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 45666665 46777777766545789999998877665555444333 23667777876510 00 0 0015689
Q ss_pred EEEEeCCCh-----------------hchHHHHHhcccCCCEEEEEe
Q 026506 184 SIFLDLPQP-----------------WLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 184 ~v~~~~~~~-----------------~~~l~~~~~~L~~gG~l~~~~ 213 (237)
.++.+.... ..+++.+.+.++++|.+++++
T Consensus 79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~is 125 (275)
T PRK06940 79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIA 125 (275)
T ss_pred EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 988765311 123556666777777766554
No 460
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.35 E-value=0.49 Score=39.70 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=48.1
Q ss_pred CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCH---------------------HHHHHHHHHHHHcCCCCcEEEE
Q 026506 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE---------------------QRAASAREDFERTGVSSFVTVG 165 (237)
Q Consensus 108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~---------------------~~~~~a~~~~~~~~~~~~i~~~ 165 (237)
...+|+.+|||. |......+... +-++++.+|.+. ...+.+++++...+-.-.++..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 357899999997 66655555554 346899898753 2456666666655433335555
Q ss_pred EccccCCCCCCCCCCCCCEEEEeCC
Q 026506 166 VRDIQGQGFPDEFSGLADSIFLDLP 190 (237)
Q Consensus 166 ~~d~~~~~~~~~~~~~~D~v~~~~~ 190 (237)
..+.....+.+ .-..+|+|+....
T Consensus 102 ~~~~~~~~~~~-~~~~~DlVid~~D 125 (338)
T PRK12475 102 VTDVTVEELEE-LVKEVDLIIDATD 125 (338)
T ss_pred eccCCHHHHHH-HhcCCCEEEEcCC
Confidence 55553211111 1146999776543
No 461
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.22 E-value=1.2 Score=40.50 Aligned_cols=98 Identities=14% Similarity=0.023 Sum_probs=62.7
Q ss_pred CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCC-CCCCCCCCCEEEE
Q 026506 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFSGLADSIFL 187 (237)
Q Consensus 110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~D~v~~ 187 (237)
.+|+.+|+|. |......+.. ....++++|.|++.++.+++ .| ..+..+|..+... ....-.++|.++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 5788888887 5544444443 23579999999999998876 34 5568888876222 1111257899888
Q ss_pred eCCChhch--HHHHHhcccCCCEEEEEeCCHH
Q 026506 188 DLPQPWLA--IPSAKKMLKQDGILCSFSPCIE 217 (237)
Q Consensus 188 ~~~~~~~~--l~~~~~~L~~gG~l~~~~~~~~ 217 (237)
..+++... +-...+.+.|...++.-.....
T Consensus 471 ~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~ 502 (601)
T PRK03659 471 TCNEPEDTMKIVELCQQHFPHLHILARARGRV 502 (601)
T ss_pred EeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence 77765433 2233555678877775554433
No 462
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=93.15 E-value=0.64 Score=38.92 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=58.9
Q ss_pred CCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc---ccCCCCCCCC-
Q 026506 105 ELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD---IQGQGFPDEF- 178 (237)
Q Consensus 105 ~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~- 178 (237)
.+.+|++++..|+++ |..+..+++..+....++++.. ++..+.+++ .|.+..+.....+ ..........
T Consensus 148 ~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~-~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~ 222 (352)
T cd08247 148 KLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCS-SRSAELNKK----LGADHFIDYDAHSGVKLLKPVLENVKG 222 (352)
T ss_pred ccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeC-hhHHHHHHH----hCCCEEEecCCCcccchHHHHHHhhcC
Confidence 478899999999864 6666777776433226777654 444444432 4553322221112 1100011111
Q ss_pred CCCCCEEEEeCCChhchHHHHHhccc---CCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLK---QDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~---~gG~l~~~~ 213 (237)
..++|+++...... ..+..+.+.|+ ++|+++.++
T Consensus 223 ~~~~d~vl~~~g~~-~~~~~~~~~l~~~~~~G~~v~~~ 259 (352)
T cd08247 223 QGKFDLILDCVGGY-DLFPHINSILKPKSKNGHYVTIV 259 (352)
T ss_pred CCCceEEEECCCCH-HHHHHHHHHhCccCCCCEEEEEe
Confidence 25699877654432 36788889999 999998653
No 463
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=93.10 E-value=0.59 Score=38.04 Aligned_cols=102 Identities=20% Similarity=0.165 Sum_probs=61.0
Q ss_pred cCCCCCCEEEEEccC-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCC
Q 026506 104 LELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (237)
Q Consensus 104 ~~~~~~~~vldiG~G-~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 181 (237)
..+.++.+++..|++ . |..+..++... ..+++.++.+++..+.+++ .+....+.....+..........+.+
T Consensus 135 ~~~~~~~~vlv~g~~~~ig~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ 208 (323)
T cd05276 135 GGLKAGETVLIHGGASGVGTAAIQLAKAL--GARVIATAGSEEKLEACRA----LGADVAINYRTEDFAEEVKEATGGRG 208 (323)
T ss_pred cCCCCCCEEEEEcCcChHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEeCCchhHHHHHHHHhCCCC
Confidence 457789999999863 3 56666666665 3568888888887777644 34322112111111110000001146
Q ss_pred CCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 182 ~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+|+++...... .+....+.++++|+++.++
T Consensus 209 ~d~vi~~~g~~--~~~~~~~~~~~~g~~i~~~ 238 (323)
T cd05276 209 VDVILDMVGGD--YLARNLRALAPDGRLVLIG 238 (323)
T ss_pred eEEEEECCchH--HHHHHHHhhccCCEEEEEe
Confidence 89988655533 3677788899999888664
No 464
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.87 E-value=0.59 Score=38.20 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=55.5
Q ss_pred CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---CC-----C--------CcEEEEEccccCC
Q 026506 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---GV-----S--------SFVTVGVRDIQGQ 172 (237)
Q Consensus 110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~-----~--------~~i~~~~~d~~~~ 172 (237)
.+|..+|+|. |.-....+.. ...+|+.+|.+++.++.+.++.... +. . .++.+ ..|.. .
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~-~ 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLK-A 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHH-H
Confidence 3688999987 4433222222 2367999999999998876543211 10 0 01221 11211 1
Q ss_pred CCCCCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEEeC
Q 026506 173 GFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 173 ~~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~ 214 (237)
.. ...|+|+...+... .++.++.+.++++..++....
T Consensus 78 ~~-----~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 78 AV-----ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred hh-----cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 11 45899999888664 346667777888776654433
No 465
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.74 E-value=0.46 Score=37.48 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=47.7
Q ss_pred CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeC-------------------CHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF-------------------HEQRAASAREDFERTGVSSFVTVGVRD 168 (237)
Q Consensus 109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~-------------------~~~~~~~a~~~~~~~~~~~~i~~~~~d 168 (237)
..+|+.+|||. |......+.+.+ -++++.+|. .....+.+++++...+-.-.++.....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 57999999998 666655555553 477888853 344566777777665432235554444
Q ss_pred ccCCCCCCCCCCCCCEEEEeCCCh
Q 026506 169 IQGQGFPDEFSGLADSIFLDLPQP 192 (237)
Q Consensus 169 ~~~~~~~~~~~~~~D~v~~~~~~~ 192 (237)
+......+ .-..+|+|+.....+
T Consensus 100 i~~~~~~~-~~~~~DvVi~~~d~~ 122 (228)
T cd00757 100 LDAENAEE-LIAGYDLVLDCTDNF 122 (228)
T ss_pred eCHHHHHH-HHhCCCEEEEcCCCH
Confidence 32111111 114599988665433
No 466
>PRK08324 short chain dehydrogenase; Validated
Probab=92.72 E-value=0.74 Score=42.54 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=61.0
Q ss_pred CCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-C----CC--CC
Q 026506 107 VPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EF 178 (237)
Q Consensus 107 ~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~----~~--~~ 178 (237)
.++.++|..|+++ +++..+++.+ ....+|+.+|.+++.++.+.+.+... ..+.+...|+.+.. . .. ..
T Consensus 420 l~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 3578999998643 3333333332 12358999999988776665543221 23777778876511 1 00 00
Q ss_pred CCCCCEEEEeCCC------------------------hhchHHHHHhcccC---CCEEEEEeC
Q 026506 179 SGLADSIFLDLPQ------------------------PWLAIPSAKKMLKQ---DGILCSFSP 214 (237)
Q Consensus 179 ~~~~D~v~~~~~~------------------------~~~~l~~~~~~L~~---gG~l~~~~~ 214 (237)
.+++|+||.+... ...+++.+.+.+++ +|.+++++.
T Consensus 496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 1468999876541 12345666777766 688887654
No 467
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.70 E-value=2 Score=35.10 Aligned_cols=96 Identities=18% Similarity=0.167 Sum_probs=53.5
Q ss_pred EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEEEccccCCCCCCCCCCCCCEEE
Q 026506 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---SFVTVGVRDIQGQGFPDEFSGLADSIF 186 (237)
Q Consensus 111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~~~~~~~~~~~D~v~ 186 (237)
+|+.+|+|. |......+... ..+|+.++.+++.++..++. +.. ..... ..... ..... . ..+|+|+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~-~~~~~-~~~~~-~-~~~d~vi 71 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNEN----GLRLEDGEITV-PVLAA-DDPAE-L-GPQDLVI 71 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHc----CCcccCCceee-cccCC-CChhH-c-CCCCEEE
Confidence 688999988 54443333332 35799999877776655542 321 10100 00001 11111 1 5699999
Q ss_pred EeCCCh--hchHHHHHhcccCCCEEEEEeCCH
Q 026506 187 LDLPQP--WLAIPSAKKMLKQDGILCSFSPCI 216 (237)
Q Consensus 187 ~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~ 216 (237)
+..+.. ..+++.+...+.++..++......
T Consensus 72 la~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 72 LAVKAYQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred EecccccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 876643 356777777777777777554433
No 468
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=92.70 E-value=0.9 Score=37.11 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=60.7
Q ss_pred HhcCCCCCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCC-CC
Q 026506 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EF 178 (237)
Q Consensus 102 ~~~~~~~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~ 178 (237)
....+.++.+++..|+ |. |..+..++...+ .++++++.+ +..+.+++ .+....+.... +... .+.. ..
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~-~~~~~~~~----~g~~~~~~~~~-~~~~-~~~~~~~ 208 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAG--ARVYATASS-EKAAFARS----LGADPIIYYRE-TVVE-YVAEHTG 208 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcC--CEEEEEech-HHHHHHHH----cCCCEEEecch-hHHH-HHHHhcC
Confidence 3456788999999984 44 666667777753 568888776 76666644 35432112111 1111 0110 11
Q ss_pred CCCCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 179 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
+..+|+++..... ..+....+.++++|+++.++
T Consensus 209 ~~~~d~v~~~~~~--~~~~~~~~~l~~~g~~v~~~ 241 (326)
T cd08272 209 GRGFDVVFDTVGG--ETLDASFEAVALYGRVVSIL 241 (326)
T ss_pred CCCCcEEEECCCh--HHHHHHHHHhccCCEEEEEe
Confidence 1468998755443 25777889999999988664
No 469
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.68 E-value=0.25 Score=39.63 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=37.2
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHH
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAP-------TGHVYTFDFHEQRAASAREDFER 155 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~ 155 (237)
..-+|+|+|+|.|.++..++..+.. ..+++.+|.|+.+.+.-++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3469999999999999999887743 25899999999998888877654
No 470
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.63 E-value=1.2 Score=36.85 Aligned_cols=103 Identities=17% Similarity=0.056 Sum_probs=59.4
Q ss_pred CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEEccccCCCCCCCCCCCCC
Q 026506 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-----SFVTVGVRDIQGQGFPDEFSGLAD 183 (237)
Q Consensus 110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~~~~D 183 (237)
.+|+.+|+|. |++....+... ...|+.++.+++.++..++. .|+. ....+. .... . ++ ..+.+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~-~~~~-~--~~-~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYA-IPAE-T--AD-AAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeec-cCCC-C--cc-cccccC
Confidence 5799999998 66554444443 25788888877666655542 1211 101110 0000 0 11 115799
Q ss_pred EEEEeCCC--hhchHHHHHhcccCCCEEEEEeCCHHHHHHH
Q 026506 184 SIFLDLPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRS 222 (237)
Q Consensus 184 ~v~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~ 222 (237)
+|++..-. ..+.++.+...+.++..++.+.--....+.+
T Consensus 73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l 113 (305)
T PRK05708 73 RLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAV 113 (305)
T ss_pred EEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH
Confidence 99987543 3457888888899999887665443333333
No 471
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.58 E-value=0.48 Score=33.93 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=57.2
Q ss_pred CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeC-------------------CHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 026506 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF-------------------HEQRAASAREDFERTGVSSFVTVGVRD 168 (237)
Q Consensus 109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~-------------------~~~~~~~a~~~~~~~~~~~~i~~~~~d 168 (237)
..+|+.+|||. |......+.+.+ -++++.+|. .....+.+++++......-.++....+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 36899999997 766655555553 478988883 233567777777765433336666666
Q ss_pred ccCCCCCCCCCCCCCEEEEeCCChhchHHHHHhcccCCCEEEEE
Q 026506 169 IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 169 ~~~~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~ 212 (237)
+......... ..+|+|+..... ......+.+.++..+.-++.
T Consensus 81 ~~~~~~~~~~-~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~ 122 (135)
T PF00899_consen 81 IDEENIEELL-KDYDIVIDCVDS-LAARLLLNEICREYGIPFID 122 (135)
T ss_dssp CSHHHHHHHH-HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEE
T ss_pred cccccccccc-cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEE
Confidence 5221111111 368998776554 33444444455545544433
No 472
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=92.57 E-value=0.69 Score=38.38 Aligned_cols=104 Identities=19% Similarity=0.176 Sum_probs=56.4
Q ss_pred HHHhcCCCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EccccCCCCCCC
Q 026506 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG-VRDIQGQGFPDE 177 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~~~~~ 177 (237)
..+++......++..+|||. +......+....+-.+|...+.+++..+...+.+...+ +.+. ..|.. ...
T Consensus 119 a~~~La~~~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~----~~v~~~~~~~-~av--- 190 (313)
T PF02423_consen 119 AARYLARPDARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLG----VPVVAVDSAE-EAV--- 190 (313)
T ss_dssp HHHHHS-TT--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCC----TCEEEESSHH-HHH---
T ss_pred HHHHhCcCCCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcccc----ccceeccchh-hhc---
Confidence 44566656667999999999 76665555555567899999999998888777776533 2222 23332 222
Q ss_pred CCCCCCEEEEeCCChh--chHHHHHhcccCCCEEEEEeCC
Q 026506 178 FSGLADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPC 215 (237)
Q Consensus 178 ~~~~~D~v~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~ 215 (237)
...|+|+...+... .++.. +.|+||-.+..++..
T Consensus 191 --~~aDii~taT~s~~~~P~~~~--~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 --RGADIIVTATPSTTPAPVFDA--EWLKPGTHINAIGSY 226 (313)
T ss_dssp --TTSSEEEE----SSEEESB-G--GGS-TT-EEEE-S-S
T ss_pred --ccCCEEEEccCCCCCCccccH--HHcCCCcEEEEecCC
Confidence 35899987665544 44442 478888777766543
No 473
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.50 E-value=2.1 Score=34.78 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=50.6
Q ss_pred EEEEEccCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 111 LVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 111 ~vldiG~G~-G~-~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
+|..+|+|. |. ++..+.+. ..+|+++|.+++.++.+.+. +. +.....+. .. ....|+|++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-----~~--~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIER----GL---VDEASTDL-----SL--LKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHC----CC---cccccCCH-----hH--hcCCCEEEEc
Confidence 578889887 44 33333332 35899999999888776652 32 11111111 11 1458999998
Q ss_pred CCChh--chHHHHHhcccCCCEEEEEe
Q 026506 189 LPQPW--LAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 189 ~~~~~--~~l~~~~~~L~~gG~l~~~~ 213 (237)
.|... +.++++...++++..+.-.+
T Consensus 65 vp~~~~~~~~~~l~~~l~~~~ii~d~~ 91 (279)
T PRK07417 65 LPIGLLLPPSEQLIPALPPEAIVTDVG 91 (279)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEeCc
Confidence 87543 35667777777775554333
No 474
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=0.71 Score=38.69 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=42.6
Q ss_pred HHHhcCCCCCCEEEEEccCccHHHHHHHHHh---CC----CcEEEEEeCCHHHHHHHHHHHHHc
Q 026506 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAV---AP----TGHVYTFDFHEQRAASAREDFERT 156 (237)
Q Consensus 100 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~---~~----~~~v~~vD~~~~~~~~a~~~~~~~ 156 (237)
+.+.......-.++|+|+|.|.++..+++.+ .| ..+++.+|+|++..+.=+++++..
T Consensus 69 ~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 69 LWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3444555556789999999999998887654 22 478999999999887766666543
No 475
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=92.45 E-value=2.9 Score=33.30 Aligned_cols=117 Identities=21% Similarity=0.226 Sum_probs=79.9
Q ss_pred CCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccC---CCCCCCCCCCC
Q 026506 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDEFSGLA 182 (237)
Q Consensus 106 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~~~ 182 (237)
.+++.+ +..-+|+-.++..+.+. .-++..+|+.|+-....++++. -+.++.+..+|-.. ..+|.. .+=
T Consensus 87 lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~--erR 157 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPK--ERR 157 (279)
T ss_pred hCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHHHHhhhCCCC--Ccc
Confidence 445544 78889998888777665 3679999999999999988875 23448888888765 223332 345
Q ss_pred CEEEEeCC-----ChhchHHHHHhccc--CCCEEEEEeCCH--HHHHHHHHHHHh-cCc
Q 026506 183 DSIFLDLP-----QPWLAIPSAKKMLK--QDGILCSFSPCI--EQVQRSCESLRL-NFT 231 (237)
Q Consensus 183 D~v~~~~~-----~~~~~l~~~~~~L~--~gG~l~~~~~~~--~~~~~~~~~l~~-~f~ 231 (237)
-+|++|+| +...+++.+.+.++ ++|+..++-|.. .+.+++.+.|+. +..
T Consensus 158 glVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~ 216 (279)
T COG2961 158 GLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIR 216 (279)
T ss_pred eEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCcc
Confidence 67889987 22334444444444 677777787765 667888888887 553
No 476
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=92.38 E-value=0.95 Score=36.92 Aligned_cols=103 Identities=20% Similarity=0.157 Sum_probs=61.3
Q ss_pred hcCCCCCCEEEEEccCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 103 YLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~--G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
...+.++.+++..|++. |..+..++... ..+++++..+++..+.+++ .+....+.....++.........+.
T Consensus 134 ~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 207 (325)
T TIGR02824 134 RGGLKAGETVLIHGGASGIGTTAIQLAKAF--GARVFTTAGSDEKCAACEA----LGADIAINYREEDFVEVVKAETGGK 207 (325)
T ss_pred hcCCCCCCEEEEEcCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCchhHHHHHHHHcCCC
Confidence 45678899999998632 55666666665 3678888888887776643 3442211111111111000001114
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
++|+++..... ..+..+.+.++++|+++.++
T Consensus 208 ~~d~~i~~~~~--~~~~~~~~~l~~~g~~v~~g 238 (325)
T TIGR02824 208 GVDVILDIVGG--SYLNRNIKALALDGRIVQIG 238 (325)
T ss_pred CeEEEEECCch--HHHHHHHHhhccCcEEEEEe
Confidence 58997765443 25777888999999998664
No 477
>PRK08507 prephenate dehydrogenase; Validated
Probab=92.36 E-value=1.9 Score=35.02 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=51.4
Q ss_pred EEEEEccCc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 111 LVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 111 ~vldiG~G~-G~-~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
+|..+|+|. |. ++..+... +....++++|.+++..+.+++ .+... . ..+.. .. ...|+||+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~-g~~~~v~~~d~~~~~~~~~~~----~g~~~---~-~~~~~--~~-----~~aD~Vila 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEK-GLISKVYGYDHNELHLKKALE----LGLVD---E-IVSFE--EL-----KKCDVIFLA 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhc-CCCCEEEEEcCCHHHHHHHHH----CCCCc---c-cCCHH--HH-----hcCCEEEEe
Confidence 577888876 43 33333322 222479999999988776643 34321 1 11211 11 238999998
Q ss_pred CCChh--chHHHHHhcccCCCEEEEEeCCHHH
Q 026506 189 LPQPW--LAIPSAKKMLKQDGILCSFSPCIEQ 218 (237)
Q Consensus 189 ~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~ 218 (237)
.|... +.+..+.. ++++..++-.+.....
T Consensus 66 vp~~~~~~~~~~l~~-l~~~~iv~d~gs~k~~ 96 (275)
T PRK08507 66 IPVDAIIEILPKLLD-IKENTTIIDLGSTKAK 96 (275)
T ss_pred CcHHHHHHHHHHHhc-cCCCCEEEECccchHH
Confidence 87543 45666666 7777766644443333
No 478
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.31 E-value=0.26 Score=40.89 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=45.7
Q ss_pred EEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCC
Q 026506 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (237)
Q Consensus 112 vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 190 (237)
|+|+.||.|++..-+... +-..+.++|+++.+.+..+.|... .+..+|+.+...... ..+|+++..+|
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~--~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDI--PDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhC--CCcCEEEecCC
Confidence 589999999999777654 335577899999999988887431 223456654221111 35899876655
No 479
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=92.23 E-value=1.8 Score=35.63 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=58.6
Q ss_pred cCCC-CCCEEEEEcc-Cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCC
Q 026506 104 LELV-PGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (237)
Q Consensus 104 ~~~~-~~~~vldiG~-G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 180 (237)
+... ++.++|..|+ |+ |..+.++++.++ .++++++.+++..+.+++ .|....+... +.. ........+
T Consensus 141 ~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G--~~vi~~~~~~~~~~~~~~----~g~~~~~~~~--~~~-~~~~~~~~~ 211 (324)
T cd08288 141 HGVTPGDGPVLVTGAAGGVGSVAVALLARLG--YEVVASTGRPEEADYLRS----LGASEIIDRA--ELS-EPGRPLQKE 211 (324)
T ss_pred cCcCCCCCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh----cCCCEEEEcc--hhh-HhhhhhccC
Confidence 3444 5679999997 55 777888888863 578888888888877754 4553312211 111 111111113
Q ss_pred CCCEEEEeCCChhchHHHHHhcccCCCEEEEEe
Q 026506 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 181 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 213 (237)
++|.++-.... ..+..+...++.+|.++.++
T Consensus 212 ~~~~~~d~~~~--~~~~~~~~~~~~~g~~~~~G 242 (324)
T cd08288 212 RWAGAVDTVGG--HTLANVLAQTRYGGAVAACG 242 (324)
T ss_pred cccEEEECCcH--HHHHHHHHHhcCCCEEEEEE
Confidence 57775544332 24566667778878777654
No 480
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=92.22 E-value=2.5 Score=36.13 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=65.1
Q ss_pred HHHHHHhcCCC-CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccCCCC
Q 026506 97 ISFVIMYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQGQGF 174 (237)
Q Consensus 97 ~~~~~~~~~~~-~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~ 174 (237)
..++++.+... ....|+.++-.-|.++..++.. ++ . ...|. --.-...++|+..++++.. ++.. +.. ..+
T Consensus 32 de~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~-~~-~--~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~--~~~-~~~ 103 (378)
T PRK15001 32 DEYLLQQLDDTEIRGPVLILNDAFGALSCALAEH-KP-Y--SIGDS-YISELATRENLRLNGIDESSVKFL--DST-ADY 103 (378)
T ss_pred HHHHHHHHhhcccCCCEEEEcCchhHHHHHHHhC-CC-C--eeehH-HHHHHHHHHHHHHcCCCcccceee--ccc-ccc
Confidence 33455554322 2238999999999999988843 22 2 22342 2334445678888886532 3332 332 233
Q ss_pred CCCCCCCCCEEEEeCCChhc----hHHHHHhcccCCCEEEEEe
Q 026506 175 PDEFSGLADSIFLDLPQPWL----AIPSAKKMLKQDGILCSFS 213 (237)
Q Consensus 175 ~~~~~~~~D~v~~~~~~~~~----~l~~~~~~L~~gG~l~~~~ 213 (237)
+ +.+|+|++-.|...+ .+..+...|.||+.+++-.
T Consensus 104 ~----~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 104 P----QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred c----CCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 4 569999998886653 4666777999999987443
No 481
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.19 E-value=1.2 Score=37.07 Aligned_cols=106 Identities=17% Similarity=0.067 Sum_probs=60.8
Q ss_pred CEEEEEccCc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------cCCC-----CcEEEEEccccCCCCC
Q 026506 110 CLVLESGTGS-GSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFER-------TGVS-----SFVTVGVRDIQGQGFP 175 (237)
Q Consensus 110 ~~vldiG~G~-G~~-~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~~-----~~i~~~~~d~~~~~~~ 175 (237)
.+|..+|+|+ |.- +..++. ....|+..|.+++.++.+++.+.. .+.. .++.+. .|..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~---aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~----- 78 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA---HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIE----- 78 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHH-----
Confidence 5799999998 443 333333 247899999999888776554331 1211 111211 1111
Q ss_pred CCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEEeCCHHHHHHHHHHH
Q 026506 176 DEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (237)
Q Consensus 176 ~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l 226 (237)
+ .-...|+|+...+... .+++++.+.++|+.+|. .+++.....++.+.+
T Consensus 79 ~-av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIla-SnTS~l~~s~la~~~ 131 (321)
T PRK07066 79 A-CVADADFIQESAPEREALKLELHERISRAAKPDAIIA-SSTSGLLPTDFYARA 131 (321)
T ss_pred H-HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEE-ECCCccCHHHHHHhc
Confidence 1 0146899999887654 46788888889887444 333333334444333
No 482
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.11 E-value=2.8 Score=34.20 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=71.4
Q ss_pred CCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFSG 180 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~~ 180 (237)
.+..|+.-||.+|--..........+.+++.+-...+.++...+.+.+.+..+++.+...|+.+.. .+. ..-+
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 477889999888643222222222346677777777777777555554443335888899987621 110 1126
Q ss_pred CCCEEEEeCCCh------------------------hchHHHHHhcccCC--CEEEEE---------------eCCHHHH
Q 026506 181 LADSIFLDLPQP------------------------WLAIPSAKKMLKQD--GILCSF---------------SPCIEQV 219 (237)
Q Consensus 181 ~~D~v~~~~~~~------------------------~~~l~~~~~~L~~g--G~l~~~---------------~~~~~~~ 219 (237)
+.|+.+.|.+-. ....+.+.+.|++. |.++++ ++....+
T Consensus 91 ~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~~~Y~ASK~Al 170 (282)
T KOG1205|consen 91 RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSIYSASKHAL 170 (282)
T ss_pred CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcccccchHHHHH
Confidence 799988765311 12345566666544 887744 3444456
Q ss_pred HHHHHHHHh
Q 026506 220 QRSCESLRL 228 (237)
Q Consensus 220 ~~~~~~l~~ 228 (237)
.-+.+.||.
T Consensus 171 ~~f~etLR~ 179 (282)
T KOG1205|consen 171 EGFFETLRQ 179 (282)
T ss_pred HHHHHHHHH
Confidence 777777776
No 483
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.09 E-value=2.7 Score=34.42 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=55.0
Q ss_pred CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------CC-C--------CcEEEEEccccCC
Q 026506 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------GV-S--------SFVTVGVRDIQGQ 172 (237)
Q Consensus 110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~-~--------~~i~~~~~d~~~~ 172 (237)
.+|..+|+|. |.-....+.. ....|+.+|.+++.++.+.+.+..+ +. . .++.+ ..|..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~-- 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLE-- 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHH--
Confidence 4788999998 4333222222 2368999999999888765543221 21 0 11222 12221
Q ss_pred CCCCCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEE
Q 026506 173 GFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCS 211 (237)
Q Consensus 173 ~~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~ 211 (237)
.. ...|+|+...+... .+++.+...++++..++.
T Consensus 80 ~~-----~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 80 DL-----ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred Hh-----cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 11 45899999887642 456777788888887663
No 484
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.08 E-value=1.6 Score=35.61 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=55.2
Q ss_pred CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--------CCC---------CcEEEEEccccC
Q 026506 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--------GVS---------SFVTVGVRDIQG 171 (237)
Q Consensus 110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~---------~~i~~~~~d~~~ 171 (237)
.+|..+|+|. |.-....+.. ...+|+.+|.+++.++.+++.+... ... .++.+ ..|..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~- 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLA- 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHH-
Confidence 4788999988 4333232222 2368999999999888887653211 110 11221 12221
Q ss_pred CCCCCCCCCCCCEEEEeCCChh----chHHHHHhcccCCCEEEEE
Q 026506 172 QGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSF 212 (237)
Q Consensus 172 ~~~~~~~~~~~D~v~~~~~~~~----~~l~~~~~~L~~gG~l~~~ 212 (237)
... ...|+|+...+... .+++++.+.++++..+...
T Consensus 80 ~a~-----~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 80 EAV-----KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred HHh-----cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 111 45899999888653 4567777777777665433
No 485
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.00 E-value=1.3 Score=39.82 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=51.6
Q ss_pred hcCCCCCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHc-----CC--CCcEEEEEccccCCC-
Q 026506 103 YLELVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERT-----GV--SSFVTVGVRDIQGQG- 173 (237)
Q Consensus 103 ~~~~~~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~-----~~--~~~i~~~~~d~~~~~- 173 (237)
..+.+.|.+||..|+ +|+++..+++.+ ..+.+|++++.+++.++...+.+... +. ...+.++.+|+.+..
T Consensus 74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 445667888888876 455666655443 23468999988887766554433221 11 123778888987521
Q ss_pred CCCCCCCCCCEEEEeCC
Q 026506 174 FPDEFSGLADSIFLDLP 190 (237)
Q Consensus 174 ~~~~~~~~~D~v~~~~~ 190 (237)
+.. .-+++|+||++..
T Consensus 153 I~~-aLggiDiVVn~AG 168 (576)
T PLN03209 153 IGP-ALGNASVVICCIG 168 (576)
T ss_pred HHH-HhcCCCEEEEccc
Confidence 111 1156899887653
No 486
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.97 E-value=0.5 Score=39.79 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=35.7
Q ss_pred CCCCCCEEEEEccCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 026506 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151 (237)
Q Consensus 105 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~ 151 (237)
+..+-+.++|+|+|.|+++..++-.. +-.|.++|.|....+.|++
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 44566799999999999999888765 4689999999776665544
No 487
>PRK08223 hypothetical protein; Validated
Probab=91.95 E-value=1.3 Score=36.24 Aligned_cols=81 Identities=16% Similarity=0.103 Sum_probs=46.8
Q ss_pred CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC-------------------HHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH-------------------EQRAASAREDFERTGVSSFVTVGVR 167 (237)
Q Consensus 108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~-------------------~~~~~~a~~~~~~~~~~~~i~~~~~ 167 (237)
...+|+.+|||. |...+..+.+.+ -+++..+|.+ ....+.+++++...+-.-.++....
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aG-VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLG-IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhC-CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 357999999997 776655555554 4678888742 2356667777765543323554444
Q ss_pred cccCCCCCCCCCCCCCEEEEeCCC
Q 026506 168 DIQGQGFPDEFSGLADSIFLDLPQ 191 (237)
Q Consensus 168 d~~~~~~~~~~~~~~D~v~~~~~~ 191 (237)
.+......+ .-..+|+|+ |..+
T Consensus 105 ~l~~~n~~~-ll~~~DlVv-D~~D 126 (287)
T PRK08223 105 GIGKENADA-FLDGVDVYV-DGLD 126 (287)
T ss_pred ccCccCHHH-HHhCCCEEE-ECCC
Confidence 443222111 114699987 4433
No 488
>PRK08339 short chain dehydrogenase; Provisional
Probab=91.84 E-value=1.4 Score=35.29 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=46.3
Q ss_pred CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC-----CCCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD-----EFSG 180 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~-----~~~~ 180 (237)
.+.++|..|++.| ++..+++.+ ....+|+.++.+++.++.+.+.+.... ...+.+...|+.+.. ... ...+
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 4678888887653 333333332 234689999998887776665544321 123777788876511 100 0014
Q ss_pred CCCEEEEeC
Q 026506 181 LADSIFLDL 189 (237)
Q Consensus 181 ~~D~v~~~~ 189 (237)
..|+++.+.
T Consensus 85 ~iD~lv~na 93 (263)
T PRK08339 85 EPDIFFFST 93 (263)
T ss_pred CCcEEEECC
Confidence 689888664
No 489
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.80 E-value=3.4 Score=34.22 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=60.9
Q ss_pred CEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc----cC-CCCCCCCCCCCC
Q 026506 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI----QG-QGFPDEFSGLAD 183 (237)
Q Consensus 110 ~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~-~~~~~~~~~~~D 183 (237)
.+|+.+|+|. |++....+...+ ..|+.+ ..++.++..+++ |+ .+...+- .. ..........+|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~-~R~~~~~~l~~~----GL----~i~~~~~~~~~~~~~~~~~~~~~~~D 69 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--HDVTLL-VRSRRLEALKKK----GL----RIEDEGGNFTTPVVAATDAEALGPAD 69 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CeEEEE-ecHHHHHHHHhC----Ce----EEecCCCccccccccccChhhcCCCC
Confidence 4789999999 766555555532 344444 445446666553 42 2222111 10 011111225799
Q ss_pred EEEEeCC--ChhchHHHHHhcccCCCEEEEEeCCHHHHHHHHH
Q 026506 184 SIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCE 224 (237)
Q Consensus 184 ~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 224 (237)
+|++..- ...+.++.+.+.+++...++++-......+...+
T Consensus 70 lviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~ 112 (307)
T COG1893 70 LVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK 112 (307)
T ss_pred EEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH
Confidence 9998764 3346889999999999998877766665554433
No 490
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=91.79 E-value=0.58 Score=34.35 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=27.8
Q ss_pred EEccCcc--HHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH--HHHc
Q 026506 114 ESGTGSG--SLTTSLA-RAVAPTGHVYTFDFHEQRAASARED--FERT 156 (237)
Q Consensus 114 diG~G~G--~~~~~~~-~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~ 156 (237)
|+|+..| .....++ +..++..+++++|.+|..++..+++ +..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 7999999 5555444 3455678999999999999999888 5443
No 491
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.77 E-value=1.5 Score=35.45 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=25.5
Q ss_pred CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC
Q 026506 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH 142 (237)
Q Consensus 108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~ 142 (237)
...+|+.+|||. |..+...+.+.+ -++++.+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCC
Confidence 457899999997 777777666653 3688888854
No 492
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.77 E-value=5.1 Score=33.15 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=51.5
Q ss_pred EEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH-HHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEe
Q 026506 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA-SAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (237)
Q Consensus 111 ~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~ 188 (237)
+|..+|+|. |......+...+...++..+|.+++..+ .+.+............+...|.. .+ ...|+|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~--~l-----~~aDiViit 74 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYA--DC-----KGADVVVIT 74 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHH--Hh-----CCCCEEEEc
Confidence 688999988 5544444444333358999999987665 23222111111111233333322 12 458999886
Q ss_pred CCChh--------------chHHHHHh---cccCCCEEEEEeCCH
Q 026506 189 LPQPW--------------LAIPSAKK---MLKQDGILCSFSPCI 216 (237)
Q Consensus 189 ~~~~~--------------~~l~~~~~---~L~~gG~l~~~~~~~ 216 (237)
.+.++ ..++++.+ ...|.|.+++.+...
T Consensus 75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~ 119 (308)
T cd05292 75 AGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV 119 (308)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 54321 12222222 245889888775433
No 493
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.76 E-value=2.5 Score=31.43 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=49.1
Q ss_pred CCCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 106 ~~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
.-.|.+++.+|-|. |.-....++.+ ..+|+++|.+|-..-.|.. .| .++.. .. ... ...|+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~alqA~~----dG----f~v~~--~~-~a~-----~~adi 81 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIRALQAAM----DG----FEVMT--LE-EAL-----RDADI 81 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHHHHHHHH----TT-----EEE---HH-HHT-----TT-SE
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHHHHHhhh----cC----cEecC--HH-HHH-----hhCCE
Confidence 35688999999988 55555555554 4799999999965544433 34 33332 22 112 34798
Q ss_pred EEEeCCChhchHHHHHhcccCCCEEEEEeC
Q 026506 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (237)
Q Consensus 185 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 214 (237)
++.......-.-.+-.+.||+|.++.-.+.
T Consensus 82 ~vtaTG~~~vi~~e~~~~mkdgail~n~Gh 111 (162)
T PF00670_consen 82 FVTATGNKDVITGEHFRQMKDGAILANAGH 111 (162)
T ss_dssp EEE-SSSSSSB-HHHHHHS-TTEEEEESSS
T ss_pred EEECCCCccccCHHHHHHhcCCeEEeccCc
Confidence 776665544334566778888887774443
No 494
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.73 E-value=1.5 Score=34.73 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=47.5
Q ss_pred CCCEEEEEccCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCC-CCC------CCC
Q 026506 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~------~~~ 179 (237)
.+.++|..|+++ +++..++..+ ....+|+.++.+++.++...+.+...+ .++.....|+.+.. ... ...
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899998754 4444444333 224689999998887776666555443 33667778876511 100 001
Q ss_pred CCCCEEEEeC
Q 026506 180 GLADSIFLDL 189 (237)
Q Consensus 180 ~~~D~v~~~~ 189 (237)
+..|.++.+.
T Consensus 85 g~id~lv~~a 94 (253)
T PRK05867 85 GGIDIAVCNA 94 (253)
T ss_pred CCCCEEEECC
Confidence 4689988754
No 495
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=91.72 E-value=0.93 Score=36.48 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=46.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEEEEeCCCh--hchHHHHHhcccCCCE
Q 026506 131 APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP--WLAIPSAKKMLKQDGI 208 (237)
Q Consensus 131 ~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~ 208 (237)
++..+|+++|.++..++.|++ .|+... ...+. ..+ ..+|+|++..|-. .++++++...+++|+.
T Consensus 9 g~~~~v~g~d~~~~~~~~a~~----~g~~~~---~~~~~--~~~-----~~~DlvvlavP~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 9 GPDVEVYGYDRDPETLEAALE----LGIIDE---ASTDI--EAV-----EDADLVVLAVPVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp TTTSEEEEE-SSHHHHHHHHH----TTSSSE---EESHH--HHG-----GCCSEEEE-S-HHHHHHHHHHHHCGS-TTSE
T ss_pred CCCeEEEEEeCCHHHHHHHHH----CCCeee---ccCCH--hHh-----cCCCEEEEcCCHHHHHHHHHHhhhhcCCCcE
Confidence 556899999999999888876 465431 11211 112 3479999988743 3578888889999998
Q ss_pred EEEEeCCHHHH
Q 026506 209 LCSFSPCIEQV 219 (237)
Q Consensus 209 l~~~~~~~~~~ 219 (237)
+.=++......
T Consensus 75 v~Dv~SvK~~~ 85 (258)
T PF02153_consen 75 VTDVGSVKAPI 85 (258)
T ss_dssp EEE--S-CHHH
T ss_pred EEEeCCCCHHH
Confidence 88666554443
No 496
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.67 E-value=1.5 Score=36.28 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=54.7
Q ss_pred CCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc-----CCCCCCCCCCCC
Q 026506 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-----GQGFPDEFSGLA 182 (237)
Q Consensus 109 ~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~-----~~~~~~~~~~~~ 182 (237)
..+|+.+|+|. |......+... ...|+.+..++ .+..++ .++. +....++.. ....++ ....+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~--~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~-~~~~~ 73 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSD--YEAVRE----NGLQ--VDSVHGDFHLPPVQAYRSAE-DMPPC 73 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCC--HHHHHh----CCeE--EEeCCCCeeecCceEEcchh-hcCCC
Confidence 36899999998 65544444443 25677676654 222222 2311 111011100 000111 11569
Q ss_pred CEEEEeCCCh--hchHHHHHhcccCCCEEEEEeCCHHHHHHHH
Q 026506 183 DSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (237)
Q Consensus 183 D~v~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~ 223 (237)
|+|++..+.. .++++.+...+++++.++.........+.+.
T Consensus 74 D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~ 116 (313)
T PRK06249 74 DWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLR 116 (313)
T ss_pred CEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHH
Confidence 9999876533 3567788888899998776644334333343
No 497
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.60 E-value=0.41 Score=36.17 Aligned_cols=104 Identities=20% Similarity=0.165 Sum_probs=62.5
Q ss_pred CCCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCEE
Q 026506 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (237)
Q Consensus 107 ~~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~v 185 (237)
-.|.+|..+|+|. |.-....++.+ ..+|+++|.+....+.... .+ +.. .++.+ .+ ...|+|
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~----~~----~~~--~~l~e-ll-----~~aDiv 95 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE----FG----VEY--VSLDE-LL-----AQADIV 95 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH----TT----EEE--SSHHH-HH-----HH-SEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc----cc----cee--eehhh-hc-----chhhhh
Confidence 4588999999998 66666667766 3699999998775552221 22 222 23321 12 348999
Q ss_pred EEeCCChh----chHHHHHhcccCCCEEEEEeCCH-HHHHHHHHHHHh
Q 026506 186 FLDLPQPW----LAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL 228 (237)
Q Consensus 186 ~~~~~~~~----~~l~~~~~~L~~gG~l~~~~~~~-~~~~~~~~~l~~ 228 (237)
++..|... -+=++.+..||+|.+++-.+-.. -.-+.+.+.|++
T Consensus 96 ~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 96 SLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp EE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 98877433 23456688999998887433111 123556777776
No 498
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.59 E-value=1.5 Score=34.51 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=41.7
Q ss_pred CCCEEEEEccCccHHH-HHHHHHhCCCcEEEEE--eCCHHHHHHHHHHHHHcCCCCcEEEEEccccCCCCCCCCCCCCCE
Q 026506 108 PGCLVLESGTGSGSLT-TSLARAVAPTGHVYTF--DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (237)
Q Consensus 108 ~~~~vldiG~G~G~~~-~~~~~~~~~~~~v~~v--D~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~D~ 184 (237)
.+.+||.+|.|.-..- +..+... +++|+++ +++++..+.+.. ..+.+...++....+ ..+++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~~--------~~i~~~~r~~~~~dl-----~g~~L 88 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKKY--------GNLKLIKGNYDKEFI-----KDKHL 88 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHhC--------CCEEEEeCCCChHHh-----CCCcE
Confidence 4789999999984433 2222223 3455555 777776654432 237777766653222 45888
Q ss_pred EEEeCCCh
Q 026506 185 IFLDLPQP 192 (237)
Q Consensus 185 v~~~~~~~ 192 (237)
|+....++
T Consensus 89 ViaATdD~ 96 (223)
T PRK05562 89 IVIATDDE 96 (223)
T ss_pred EEECCCCH
Confidence 88766544
No 499
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=91.56 E-value=1.2 Score=35.63 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=45.3
Q ss_pred CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCC-------------------HHHHHHHHHHHHHcCCCCcEEEEEc
Q 026506 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH-------------------EQRAASAREDFERTGVSSFVTVGVR 167 (237)
Q Consensus 108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~-------------------~~~~~~a~~~~~~~~~~~~i~~~~~ 167 (237)
...+|+.+|+|. |......+... +-++++.+|.+ ....+.+++++...+-.-.++....
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 357999999987 66655555554 34688888742 2345566666665543323444444
Q ss_pred cccCCCCCCCCCCCCCEEEEeCC
Q 026506 168 DIQGQGFPDEFSGLADSIFLDLP 190 (237)
Q Consensus 168 d~~~~~~~~~~~~~~D~v~~~~~ 190 (237)
.+....... .-..+|+|+....
T Consensus 110 ~i~~~~~~~-~~~~~DiVi~~~D 131 (245)
T PRK05690 110 RLDDDELAA-LIAGHDLVLDCTD 131 (245)
T ss_pred cCCHHHHHH-HHhcCCEEEecCC
Confidence 332211111 1146999876544
No 500
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.54 E-value=6.2 Score=32.77 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=26.9
Q ss_pred CCCEEEEEccCc-cHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 026506 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRA 146 (237)
Q Consensus 108 ~~~~vldiG~G~-G~~~~~~~~~~~~~~~v~~vD~~~~~~ 146 (237)
+..+|..+|+|. |....+.+...+-...+..+|++++..
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~ 41 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKL 41 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHH
Confidence 456899999988 555544444434446899999987644
Done!