Query 026507
Match_columns 237
No_of_seqs 159 out of 867
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 9.5E-35 2.1E-39 244.8 24.2 167 59-236 47-216 (219)
2 PF03168 LEA_2: Late embryogen 99.5 3.9E-13 8.4E-18 99.1 9.7 98 107-210 1-100 (101)
3 smart00769 WHy Water Stress an 98.5 1.7E-06 3.7E-11 64.1 10.6 61 99-160 12-73 (100)
4 PF07092 DUF1356: Protein of u 98.4 2E-05 4.2E-10 66.8 15.9 117 37-160 65-182 (238)
5 PF12751 Vac7: Vacuolar segreg 98.1 2.1E-05 4.7E-10 70.6 9.3 90 39-137 293-382 (387)
6 COG5608 LEA14-like dessication 97.4 0.021 4.6E-07 45.1 15.6 82 77-165 31-113 (161)
7 PLN03160 uncharacterized prote 96.4 0.015 3.2E-07 49.3 7.3 106 40-152 31-147 (219)
8 TIGR02588 conserved hypothetic 87.6 11 0.00024 28.9 10.2 51 58-116 11-63 (122)
9 KOG3950 Gamma/delta sarcoglyca 86.0 2 4.3E-05 36.8 5.6 76 44-120 31-126 (292)
10 PRK13150 cytochrome c-type bio 77.7 19 0.00041 29.0 8.1 64 104-174 78-145 (159)
11 PF09624 DUF2393: Protein of u 72.8 32 0.0007 26.8 8.4 62 66-137 33-96 (149)
12 PRK10893 lipopolysaccharide ex 70.5 37 0.00081 28.0 8.5 38 75-115 37-74 (192)
13 COG4698 Uncharacterized protei 70.5 4.4 9.5E-05 33.1 2.8 39 48-88 10-48 (197)
14 PF10164 DUF2367: Uncharacteri 69.5 16 0.00035 26.8 5.3 14 4-17 6-19 (98)
15 PF04790 Sarcoglycan_1: Sarcog 68.9 49 0.0011 28.8 9.2 18 99-116 83-100 (264)
16 PF14927 Neurensin: Neurensin 67.7 8.1 0.00018 30.4 3.8 30 44-73 38-67 (140)
17 PF12273 RCR: Chitin synthesis 67.3 3.3 7.2E-05 31.9 1.5 6 50-55 1-6 (130)
18 COG1580 FliL Flagellar basal b 66.6 24 0.00051 28.4 6.3 29 47-75 15-43 (159)
19 PRK13159 cytochrome c-type bio 64.0 74 0.0016 25.4 8.9 56 112-175 80-139 (155)
20 PF14155 DUF4307: Domain of un 60.9 68 0.0015 24.0 9.4 29 129-160 71-101 (112)
21 PRK05529 cell division protein 60.8 17 0.00037 31.3 4.9 45 78-123 58-128 (255)
22 PRK07021 fliL flagellar basal 56.6 48 0.001 26.4 6.5 18 118-135 77-94 (162)
23 PF12505 DUF3712: Protein of u 52.9 30 0.00065 26.2 4.6 27 100-127 98-124 (125)
24 PF11837 DUF3357: Domain of un 52.7 4.6 9.9E-05 30.1 0.0 20 50-69 29-48 (106)
25 COG2332 CcmE Cytochrome c-type 51.9 1.2E+02 0.0026 24.1 7.9 64 104-174 72-139 (153)
26 PF12505 DUF3712: Protein of u 51.9 1E+02 0.0022 23.2 9.2 64 134-203 2-67 (125)
27 PHA02819 hypothetical protein; 51.0 18 0.0004 24.8 2.7 26 46-71 41-66 (71)
28 PF08113 CoxIIa: Cytochrome c 51.0 12 0.00026 21.8 1.6 15 58-72 10-24 (34)
29 PF11906 DUF3426: Protein of u 50.3 92 0.002 24.0 7.2 40 100-140 66-106 (149)
30 PF02009 Rifin_STEVOR: Rifin/s 48.6 8.1 0.00017 34.3 0.9 22 55-76 260-281 (299)
31 PHA03054 IMV membrane protein; 45.6 22 0.00048 24.5 2.4 25 47-71 44-68 (72)
32 PRK08455 fliL flagellar basal 45.3 35 0.00076 27.9 4.1 15 120-134 103-117 (182)
33 COG5353 Uncharacterized protei 45.1 15 0.00032 29.2 1.7 31 47-77 4-34 (161)
34 PHA02844 putative transmembran 44.5 31 0.00067 24.0 3.0 27 46-72 43-69 (75)
35 PRK06531 yajC preprotein trans 43.8 13 0.00028 28.1 1.3 12 67-78 13-24 (113)
36 PF15145 DUF4577: Domain of un 43.7 29 0.00064 26.1 3.0 24 53-76 65-88 (128)
37 PF10907 DUF2749: Protein of u 43.6 26 0.00056 23.7 2.5 16 62-77 13-28 (66)
38 PF01102 Glycophorin_A: Glycop 42.9 11 0.00025 28.8 0.8 24 62-85 77-101 (122)
39 PF09604 Potass_KdpF: F subuni 42.7 13 0.00028 20.3 0.8 20 59-78 5-24 (25)
40 PF15012 DUF4519: Domain of un 42.6 26 0.00057 23.0 2.4 13 65-77 44-56 (56)
41 PF07787 DUF1625: Protein of u 42.5 26 0.00056 30.0 3.1 14 63-76 235-248 (248)
42 PHA02650 hypothetical protein; 42.2 30 0.00064 24.4 2.7 27 46-72 44-70 (81)
43 PRK13183 psbN photosystem II r 41.4 36 0.00077 21.4 2.7 24 53-76 9-32 (46)
44 PF06024 DUF912: Nucleopolyhed 41.0 37 0.00081 24.9 3.3 15 60-74 72-86 (101)
45 KOG1546 Metacaspase involved i 40.9 24 0.00053 31.7 2.7 10 113-122 137-146 (362)
46 PF02468 PsbN: Photosystem II 40.6 27 0.00058 21.7 2.1 23 54-76 7-29 (43)
47 COG5178 PRP8 U5 snRNP spliceos 40.4 29 0.00063 36.5 3.4 33 178-210 319-354 (2365)
48 COG1463 Ttg2C ABC-type transpo 40.3 70 0.0015 28.9 5.7 13 127-139 58-70 (359)
49 KOG0810 SNARE protein Syntaxin 39.7 12 0.00027 33.1 0.6 7 48-54 272-278 (297)
50 smart00831 Cation_ATPase_N Cat 39.6 39 0.00085 22.0 3.0 26 43-68 35-60 (64)
51 KOG4849 mRNA cleavage factor I 39.5 35 0.00077 30.9 3.5 12 21-32 270-281 (498)
52 PTZ00116 signal peptidase; Pro 37.5 1.1E+02 0.0023 25.3 5.7 18 76-93 36-53 (185)
53 CHL00020 psbN photosystem II p 37.2 39 0.00085 20.9 2.4 24 53-76 6-29 (43)
54 PLN03094 Substrate binding sub 37.1 97 0.0021 28.4 6.0 27 46-72 80-106 (370)
55 PHA03049 IMV membrane protein; 36.9 16 0.00036 24.8 0.8 21 55-75 4-24 (68)
56 cd01324 cbb3_Oxidase_CcoQ Cyto 36.9 24 0.00053 22.3 1.5 23 55-77 12-34 (48)
57 PRK14758 hypothetical protein; 36.3 65 0.0014 17.7 2.9 20 53-72 7-26 (27)
58 PF04478 Mid2: Mid2 like cell 36.3 31 0.00067 27.5 2.3 21 60-80 61-81 (154)
59 PHA03283 envelope glycoprotein 35.7 77 0.0017 30.3 5.2 13 63-75 412-424 (542)
60 PF06092 DUF943: Enterobacteri 35.7 25 0.00055 28.1 1.8 17 60-76 12-28 (157)
61 PHA02692 hypothetical protein; 35.3 42 0.0009 23.1 2.5 9 47-55 41-49 (70)
62 PRK13254 cytochrome c-type bio 34.4 2.3E+02 0.005 22.3 9.7 63 106-175 73-139 (148)
63 PF09307 MHC2-interact: CLIP, 34.3 13 0.00029 28.1 0.0 31 44-75 27-57 (114)
64 PF05961 Chordopox_A13L: Chord 33.9 19 0.0004 24.6 0.6 21 55-75 4-24 (68)
65 TIGR02115 potass_kdpF K+-trans 33.7 11 0.00024 20.7 -0.3 19 59-77 4-22 (26)
66 PF05545 FixQ: Cbb3-type cytoc 32.1 28 0.00061 21.8 1.3 15 63-77 19-33 (49)
67 PF07172 GRP: Glycine rich pro 32.0 42 0.00091 24.5 2.3 12 59-70 9-20 (95)
68 PF11395 DUF2873: Protein of u 31.9 28 0.00061 20.8 1.1 9 66-74 24-32 (43)
69 PF06129 Chordopox_G3: Chordop 31.8 74 0.0016 23.9 3.6 64 68-132 15-85 (109)
70 TIGR01477 RIFIN variant surfac 31.1 22 0.00047 32.3 0.8 21 57-77 316-336 (353)
71 PF05170 AsmA: AsmA family; I 30.9 2.3E+02 0.005 27.2 7.9 95 78-190 439-534 (604)
72 PF03100 CcmE: CcmE; InterPro 30.6 1.1E+02 0.0025 23.4 4.7 8 114-121 81-88 (131)
73 COG5009 MrcA Membrane carboxyp 30.4 26 0.00057 34.9 1.3 36 47-82 3-38 (797)
74 PTZ00046 rifin; Provisional 30.4 23 0.00049 32.2 0.8 21 57-77 321-341 (358)
75 PF09788 Tmemb_55A: Transmembr 30.2 49 0.0011 28.6 2.7 8 39-46 177-184 (256)
76 PRK14759 potassium-transportin 29.7 30 0.00065 19.6 0.9 19 59-77 9-27 (29)
77 PF04573 SPC22: Signal peptida 29.5 1.8E+02 0.0038 23.7 5.8 11 74-84 32-42 (175)
78 PRK12785 fliL flagellar basal 29.4 1.6E+02 0.0034 23.6 5.5 16 119-134 86-101 (166)
79 PF14283 DUF4366: Domain of un 29.3 43 0.00094 28.3 2.3 19 63-81 172-190 (218)
80 PF05399 EVI2A: Ectropic viral 29.0 64 0.0014 27.2 3.1 23 47-69 127-149 (227)
81 TIGR00996 Mtu_fam_mce virulenc 28.8 1.1E+02 0.0024 26.4 4.9 12 127-138 50-61 (291)
82 COG1589 FtsQ Cell division sep 28.7 58 0.0013 28.1 3.1 34 59-92 38-71 (269)
83 PF09911 DUF2140: Uncharacteri 27.2 94 0.002 25.5 3.9 29 49-79 3-31 (187)
84 PF07790 DUF1628: Protein of u 26.8 2.1E+02 0.0046 19.5 7.5 23 108-131 56-78 (80)
85 PF04505 Dispanin: Interferon- 26.8 1.5E+02 0.0032 20.9 4.3 7 63-69 33-39 (82)
86 PF11125 DUF2830: Protein of u 26.5 82 0.0018 20.0 2.6 20 38-57 7-26 (54)
87 PRK05696 fliL flagellar basal 26.5 1.6E+02 0.0034 23.6 5.0 26 106-134 76-101 (170)
88 COG4736 CcoQ Cbb3-type cytochr 26.4 32 0.0007 23.0 0.8 12 66-77 22-33 (60)
89 PF06637 PV-1: PV-1 protein (P 25.6 55 0.0012 30.0 2.4 15 99-113 83-97 (442)
90 PF12321 DUF3634: Protein of u 25.6 34 0.00075 25.6 0.9 8 68-75 11-18 (108)
91 PF11770 GAPT: GRB2-binding ad 24.8 83 0.0018 25.0 2.9 16 61-76 21-36 (158)
92 PF15050 SCIMP: SCIMP protein 24.2 36 0.00078 26.0 0.8 9 67-75 24-32 (133)
93 PF09677 TrbI_Ftype: Type-F co 24.1 64 0.0014 24.2 2.1 17 66-82 18-34 (111)
94 PF11322 DUF3124: Protein of u 23.7 1.8E+02 0.0039 22.4 4.5 54 99-155 20-75 (125)
95 PRK01844 hypothetical protein; 23.6 95 0.002 21.5 2.7 15 55-69 8-22 (72)
96 PF04806 EspF: EspF protein re 23.5 18 0.00039 22.4 -0.7 14 16-29 11-24 (47)
97 PF02480 Herpes_gE: Alphaherpe 22.4 29 0.00062 32.6 -0.0 21 55-75 357-377 (439)
98 PF14992 TMCO5: TMCO5 family 22.4 57 0.0012 28.7 1.8 23 44-66 213-235 (280)
99 PF07423 DUF1510: Protein of u 22.2 48 0.001 28.0 1.3 35 35-69 1-36 (217)
100 PF12606 RELT: Tumour necrosis 22.1 33 0.00072 22.0 0.2 31 55-85 5-35 (50)
101 PF12868 DUF3824: Domain of un 21.9 1.4E+02 0.0031 23.3 3.8 12 32-43 110-121 (137)
102 PRK11486 flagellar biosynthesi 21.9 58 0.0013 25.0 1.6 21 55-75 21-41 (124)
103 PF15361 RIC3: Resistance to i 21.7 1.7E+02 0.0037 23.2 4.3 16 60-75 88-103 (152)
104 smart00019 SF_P Pulmonary surf 21.4 69 0.0015 25.4 1.9 34 32-65 19-53 (191)
105 KOG1341 Na+/K+ transporter [In 21.0 57 0.0012 32.1 1.6 32 44-75 458-489 (854)
106 PF14828 Amnionless: Amnionles 21.0 58 0.0013 30.5 1.7 22 60-81 348-369 (437)
107 PRK05886 yajC preprotein trans 21.0 43 0.00094 25.1 0.7 11 67-77 15-25 (109)
108 PRK00523 hypothetical protein; 21.0 1.1E+02 0.0025 21.1 2.7 16 54-69 8-23 (72)
109 KOG1902 Putative signal transd 20.7 1.1E+02 0.0025 27.7 3.3 22 10-31 318-340 (441)
110 PF05478 Prominin: Prominin; 20.6 1.1E+02 0.0024 31.0 3.6 22 46-67 138-159 (806)
111 PF05781 MRVI1: MRVI1 protein; 20.6 80 0.0017 30.3 2.5 26 50-75 478-503 (538)
112 PF15399 DUF4620: Domain of un 20.2 95 0.0021 22.4 2.2 13 41-53 63-75 (113)
113 PF08693 SKG6: Transmembrane a 20.0 1E+02 0.0022 18.8 2.0 8 68-75 30-37 (40)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=9.5e-35 Score=244.77 Aligned_cols=167 Identities=11% Similarity=0.237 Sum_probs=144.4
Q ss_pred HHHHHHHHHhheeeEEecCCCEEEEeeeeeeeeccCCC---CceeEEEEEEEEEEecCCCeeeEEEeceEEEEEECCEEe
Q 026507 59 IISIMAVASFATWLILKPEFPEFRVDSASIAQLNTTSA---NSTMTATWQLSLRVRNPNRKLALVYNTLEAAVLYGEWEL 135 (237)
Q Consensus 59 lill~gv~~li~~lvlrP~~P~f~V~~~~v~~~~~~~~---~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~l 135 (237)
+++++++++.++|++||||+|+|+|+++++++|+++.. +..+|++++++++++|||+ ++|+|+++++.++|+|+.+
T Consensus 47 ~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~~~~v~Y~g~~v 125 (219)
T PLN03160 47 LLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSNTTTTIYYGGTVV 125 (219)
T ss_pred HHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcCeEEEEEECCEEE
Confidence 34445667778899999999999999999999998642 3468899999999999999 8999999999999999999
Q ss_pred eceecCCeeecCCCeEEEEEEEEeeeeccChHHHHHHHHHHhCCeEEEEEEEEEEEEEEEEEEEEeeeEEEEEcCeEEEe
Q 026507 136 DSTLLPPFSQEKGNETRLHFQAGLLSEYVGESVARGIEKERARGEVEFGIGVYGWVRYKARWWSMRWRFMNVYCNGVKIG 215 (237)
Q Consensus 136 g~~~vp~f~q~~~~~~~v~~~l~~~~~~l~~~~~~~l~~d~~~G~v~l~v~v~~~vr~~vg~~~~~~~~~~v~C~~l~v~ 215 (237)
|.+.+|+|+|++++++.+.+++......+.. ..+|.+|.++|.++|+++++.++++++|++.++++.++++|+ +.|+
T Consensus 126 G~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~-v~V~ 202 (219)
T PLN03160 126 GEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCT-MTVN 202 (219)
T ss_pred EEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeE-EEEE
Confidence 9999999999999999999998766544433 257999999999999999999999999999999999999998 9998
Q ss_pred ecCCCCCCccccccCCCceee
Q 026507 216 VSNDGGTAGDLVGQVRPCRVE 236 (237)
Q Consensus 216 ~~~~g~~~g~~~~~~~~C~v~ 236 (237)
+++. .+++++|+.+
T Consensus 203 ~~~~-------~i~~~~C~~~ 216 (219)
T PLN03160 203 ITSQ-------AIQGQKCKRH 216 (219)
T ss_pred CCCC-------EEeccEeccc
Confidence 7431 4578899875
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.47 E-value=3.9e-13 Score=99.13 Aligned_cols=98 Identities=22% Similarity=0.301 Sum_probs=73.6
Q ss_pred EEEEecCCCeeeEEEeceEEEEEECCEEee-ceecCCeeecCCCeEEEEEEEEeeeeccChHHHHHHHHHHhCCeEEEEE
Q 026507 107 SLRVRNPNRKLALVYNTLEAAVLYGEWELD-STLLPPFSQEKGNETRLHFQAGLLSEYVGESVARGIEKERARGEVEFGI 185 (237)
Q Consensus 107 ~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg-~~~vp~f~q~~~~~~~v~~~l~~~~~~l~~~~~~~l~~d~~~G~v~l~v 185 (237)
+|+++|||. ++++|++++++++|+|..+| ....++|.|++++++.+.+.+..+...+ .+.+.++. +|...+++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceEE
Confidence 689999999 99999999999999999999 7788999999999999999888875443 45566656 66777888
Q ss_pred EEEEEEEEEE-EEEEEeeeEEEEEcC
Q 026507 186 GVYGWVRYKA-RWWSMRWRFMNVYCN 210 (237)
Q Consensus 186 ~v~~~vr~~v-g~~~~~~~~~~v~C~ 210 (237)
.+++++++++ +.+...++.+.++|+
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeE
Confidence 8888888884 433223344555553
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.51 E-value=1.7e-06 Score=64.13 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=56.9
Q ss_pred eeEEEEEEEEEEecCCCeeeEEEeceEEEEEECCEEeeceecC-CeeecCCCeEEEEEEEEee
Q 026507 99 TMTATWQLSLRVRNPNRKLALVYNTLEAAVLYGEWELDSTLLP-PFSQEKGNETRLHFQAGLL 160 (237)
Q Consensus 99 ~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~l~~~ 160 (237)
.++.++.++++++|||. +.+.|+.++.+++|+|..+|.+..+ ++..++++++.+.+.+...
T Consensus 12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~ 73 (100)
T smart00769 12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN 73 (100)
T ss_pred ceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee
Confidence 57899999999999999 8999999999999999999999985 7999999999999998874
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.42 E-value=2e-05 Score=66.79 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=78.4
Q ss_pred CCcccCCccceehhhHHHHHHHHHHHHHHHHhheeeEEecCCCEEEEeeeeeeeeccCCCCceeEEEEEEEEEEecCCCe
Q 026507 37 SPFRLASFWSRLLCRLFLVVIVIISIMAVASFATWLILKPEFPEFRVDSASIAQLNTTSANSTMTATWQLSLRVRNPNRK 116 (237)
Q Consensus 37 ~~~~~~p~~~r~~~~~~~~l~~lill~gv~~li~~lvlrP~~P~f~V~~~~v~~~~~~~~~~~l~~~~~~~l~~~NPN~~ 116 (237)
.+.|.+|++.++.-+ +++++.+++.|+++ +.|-||.-.++-.++......++..+..+..++.-.|.++|+|.
T Consensus 65 ~DqRLKPrRTklyV~--~sV~~CLl~~~L~i----FFLfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF- 137 (238)
T PF07092_consen 65 SDQRLKPRRTKLYVF--LSVLLCLLLSGLVI----FFLFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF- 137 (238)
T ss_pred cccccCCceeEEEee--HHHHHHHHHHHheE----EEEeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-
Confidence 567888887655433 22222233333222 23447765555444444444444444578999999999999998
Q ss_pred eeEEEeceEEEEEECCEEeeceecCC-eeecCCCeEEEEEEEEee
Q 026507 117 LALVYNTLEAAVLYGEWELDSTLLPP-FSQEKGNETRLHFQAGLL 160 (237)
Q Consensus 117 ~~i~Y~~~~~~v~Y~g~~lg~~~vp~-f~q~~~~~~~v~~~l~~~ 160 (237)
..+.-.++.+++.|....+|.+.... ...++++.+.+.+.+...
T Consensus 138 y~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t~ 182 (238)
T PF07092_consen 138 YPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKTT 182 (238)
T ss_pred EEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeEE
Confidence 89999999999999999999987654 456777777777766553
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=98.08 E-value=2.1e-05 Score=70.57 Aligned_cols=90 Identities=18% Similarity=0.345 Sum_probs=58.3
Q ss_pred cccCCccceehhhHHHHHHHHHHHHHHHHhheeeEEecCCCEEEEeeeeeeeeccCCCCceeEEEEEEEEEEecCCCeee
Q 026507 39 FRLASFWSRLLCRLFLVVIVIISIMAVASFATWLILKPEFPEFRVDSASIAQLNTTSANSTMTATWQLSLRVRNPNRKLA 118 (237)
Q Consensus 39 ~~~~p~~~r~~~~~~~~l~~lill~gv~~li~~lvlrP~~P~f~V~~~~v~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~ 118 (237)
||+...|+|+.+|+++.+++|+++.+++.+++ ..-|| --.|+-..|.+.=.+ .-..-|++++.+.|||. +.
T Consensus 293 ~r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~-AttKp---L~~v~v~~I~NVlaS----~qELmfdl~V~A~NPn~-~~ 363 (387)
T PF12751_consen 293 YRQRSWFSRFASCIYLSILLLLVIGFAIGFVF-ATTKP---LTDVQVVSIQNVLAS----EQELMFDLTVEAFNPNW-FT 363 (387)
T ss_pred hccccHHhhhhHHHHHHHHHHHHHHHHHHhhh-hcCcc---cccceEEEeeeeeec----cceEEEeeEEEEECCCe-EE
Confidence 44445667888888877666555555444443 33454 222222233332222 44678999999999998 99
Q ss_pred EEEeceEEEEEECCEEeec
Q 026507 119 LVYNTLEAAVLYGEWELDS 137 (237)
Q Consensus 119 i~Y~~~~~~v~Y~g~~lg~ 137 (237)
|..++.+++||-+...+|.
T Consensus 364 V~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 364 VTIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred EEeccceeeeEecCCccCc
Confidence 9999999999977666654
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.42 E-value=0.021 Score=45.14 Aligned_cols=82 Identities=12% Similarity=0.140 Sum_probs=65.2
Q ss_pred CCCEEEEeeeeeeeeccCCCCceeEEEEEEEEEEecCCCeeeEEEeceEEEEEECCEEeeceec-CCeeecCCCeEEEEE
Q 026507 77 EFPEFRVDSASIAQLNTTSANSTMTATWQLSLRVRNPNRKLALVYNTLEAAVLYGEWELDSTLL-PPFSQEKGNETRLHF 155 (237)
Q Consensus 77 ~~P~f~V~~~~v~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~v-p~f~q~~~~~~~v~~ 155 (237)
++|.+.--.+..-... .....+-.++.++|||. +.+-...++.+++-.|..+|.+.. .++..++++...+.+
T Consensus 31 ~~p~ve~~ka~wGkvt------~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv 103 (161)
T COG5608 31 KKPGVESMKAKWGKVT------NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDV 103 (161)
T ss_pred CCCCceEEEEEEEEEe------ccceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEE
Confidence 4566666555554433 23467889999999999 899999999999999999999864 679999999999999
Q ss_pred EEEeeeeccC
Q 026507 156 QAGLLSEYVG 165 (237)
Q Consensus 156 ~l~~~~~~l~ 165 (237)
.+..+...+.
T Consensus 104 ~l~~d~~~~k 113 (161)
T COG5608 104 PLRLDNSKIK 113 (161)
T ss_pred EEEEehHHHH
Confidence 9988754443
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=96.36 E-value=0.015 Score=49.26 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=62.0
Q ss_pred ccCCccceehhhHHHHHHHHHHHHHHHHhheeeEEecC--CCEEEEeeeeeee-------eccCCC-C-ceeEEEEEEEE
Q 026507 40 RLASFWSRLLCRLFLVVIVIISIMAVASFATWLILKPE--FPEFRVDSASIAQ-------LNTTSA-N-STMTATWQLSL 108 (237)
Q Consensus 40 ~~~p~~~r~~~~~~~~l~~lill~gv~~li~~lvlrP~--~P~f~V~~~~v~~-------~~~~~~-~-~~l~~~~~~~l 108 (237)
+++.++++||+|++++++++++++++++++++=-=+|+ --.++++++.+.. +|++-. + ..-|.|. +.+
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~ 109 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASF 109 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeE
Confidence 34556677888888888888888888888777666663 4556666665532 222110 0 0113444 344
Q ss_pred EEecCCCeeeEEEeceEEEEEECCEEeeceecCCeeecCCCeEE
Q 026507 109 RVRNPNRKLALVYNTLEAAVLYGEWELDSTLLPPFSQEKGNETR 152 (237)
Q Consensus 109 ~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~~~~ 152 (237)
.-+ +..+.++|+...+ +...+..+.+++..+..-+.+.
T Consensus 110 ~Y~--~~~~~v~Y~g~~v----G~a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 110 KYS--NTTTTIYYGGTVV----GEARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred EEc--CeEEEEEECCEEE----EEEEcCCcccCCCCeEEEEEEE
Confidence 443 3447899988544 2334555566666555555553
No 8
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=87.59 E-value=11 Score=28.89 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhheeeEE--ecCCCEEEEeeeeeeeeccCCCCceeEEEEEEEEEEecCCCe
Q 026507 58 VIISIMAVASFATWLIL--KPEFPEFRVDSASIAQLNTTSANSTMTATWQLSLRVRNPNRK 116 (237)
Q Consensus 58 ~lill~gv~~li~~lvl--rP~~P~f~V~~~~v~~~~~~~~~~~l~~~~~~~l~~~NPN~~ 116 (237)
.++++++++.+++|..+ +.+.|.+++......+ .....+-+-++++|-..+
T Consensus 11 s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r--------~~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 11 STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER--------MQTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE--------EeCCEEEEEEEEEeCCCc
Confidence 33444555666666544 6789999888776643 233457777888887664
No 9
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=86.04 E-value=2 Score=36.75 Aligned_cols=76 Identities=14% Similarity=0.350 Sum_probs=41.6
Q ss_pred ccceehhhHHHHHHHHHHHHHHHHhheee----EEecC---CCEEEEeeeeeeeecc----------C--C-CCceeEEE
Q 026507 44 FWSRLLCRLFLVVIVIISIMAVASFATWL----ILKPE---FPEFRVDSASIAQLNT----------T--S-ANSTMTAT 103 (237)
Q Consensus 44 ~~~r~~~~~~~~l~~lill~gv~~li~~l----vlrP~---~P~f~V~~~~v~~~~~----------~--~-~~~~l~~~ 103 (237)
+|+|.|-++|..++.+++++-++ +.+|+ -|.|. .-+++=+.+++++-.. . . ....+...
T Consensus 31 GWRKrcLY~fvLlL~i~ivvNLa-lTiWIlkVm~Fs~dGmG~Lkit~~GirleG~sefl~pl~akei~Sr~~~~l~~~S~ 109 (292)
T KOG3950|consen 31 GWRKRCLYTFVLLLMILIVVNLA-LTIWILKVMNFSPDGMGNLKITKKGIRLEGDSEFLQPLYAKEIHSRPGSPLYLQSA 109 (292)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCcccccceEEccCcEEEechhhhhhhhhhhhhhcCCCCceEEEec
Confidence 68877777666555555544433 33353 23342 3344444444443210 0 0 11346677
Q ss_pred EEEEEEEecCCCeeeEE
Q 026507 104 WQLSLRVRNPNRKLALV 120 (237)
Q Consensus 104 ~~~~l~~~NPN~~~~i~ 120 (237)
=++++.++|||.++.=+
T Consensus 110 rnvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 110 RNVTVNARNPNGKVTGQ 126 (292)
T ss_pred cCeeEEccCCCCceeee
Confidence 78999999999976543
No 10
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=77.71 E-value=19 Score=28.95 Aligned_cols=64 Identities=6% Similarity=0.136 Sum_probs=36.2
Q ss_pred EEEEEEEecCCCeeeEEEeceEEEEEECCEE-eeceecCCeeecCCCeEEEEE-EEEe--eeeccChHHHHHHHH
Q 026507 104 WQLSLRVRNPNRKLALVYNTLEAAVLYGEWE-LDSTLLPPFSQEKGNETRLHF-QAGL--LSEYVGESVARGIEK 174 (237)
Q Consensus 104 ~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~-lg~~~vp~f~q~~~~~~~v~~-~l~~--~~~~l~~~~~~~l~~ 174 (237)
+.+.+.+..-+..+.+.|+.+-=+++-.|+. ++.+.+- +. ..+.+ ++-+ ++...++++++.|.+
T Consensus 78 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~~----~~---g~F~A~evLAKhdekYmPpEv~~al~~ 145 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTLE----KG---NHVLAHEVLAKHDENYTPPEVEKAMQE 145 (159)
T ss_pred cEEEEEEEcCCcEEEEEEeccCCccccCCCeEEEEEEEC----CC---CEEEEeEEEeCCCCCCCCHHHHHHHHH
Confidence 4455566666666777777666666666655 5556552 11 12322 2222 356678888877765
No 11
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=72.83 E-value=32 Score=26.77 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=39.9
Q ss_pred HHhheeeEEec--CCCEEEEeeeeeeeeccCCCCceeEEEEEEEEEEecCCCeeeEEEeceEEEEEECCEEeec
Q 026507 66 ASFATWLILKP--EFPEFRVDSASIAQLNTTSANSTMTATWQLSLRVRNPNRKLALVYNTLEAAVLYGEWELDS 137 (237)
Q Consensus 66 ~~li~~lvlrP--~~P~f~V~~~~v~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~ 137 (237)
+.+++|.++.- +++..++.+.+- +.. +-.+.+..+++|-.+ ..+..=.+++++..++...++
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~~-------~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQY-------SESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSGN 96 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--eee-------ccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccCc
Confidence 34444555533 566666665553 332 345778899999988 688877888888876654443
No 12
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=70.47 E-value=37 Score=27.99 Aligned_cols=38 Identities=5% Similarity=0.073 Sum_probs=24.6
Q ss_pred ecCCCEEEEeeeeeeeeccCCCCceeEEEEEEEEEEecCCC
Q 026507 75 KPEFPEFRVDSASIAQLNTTSANSTMTATWQLSLRVRNPNR 115 (237)
Q Consensus 75 rP~~P~f~V~~~~v~~~~~~~~~~~l~~~~~~~l~~~NPN~ 115 (237)
.++.|.|.+++++...|+.+. .+++.+...=.-+=|+.
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G---~l~y~l~a~~~~Hy~~~ 74 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG---ALSYKLVAQHVEYYSDQ 74 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC---CEEEEEEecceEEcCCC
Confidence 467899999999999888643 45555544433333443
No 13
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.46 E-value=4.4 Score=33.12 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=26.8
Q ss_pred ehhhHHHHHHHHHHHHHHHHhheeeEEecCCCEEEEeeeee
Q 026507 48 LLCRLFLVVIVIISIMAVASFATWLILKPEFPEFRVDSASI 88 (237)
Q Consensus 48 ~~~~~~~~l~~lill~gv~~li~~lvlrP~~P~f~V~~~~v 88 (237)
.+.|+|++++.+.++++ ++++.+++.|+.+..++.+.+-
T Consensus 10 ~WKw~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 10 YWKWLFFILLALNTLLA--VLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCc
Confidence 56677766665555443 6777788999997777776654
No 14
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=69.54 E-value=16 Score=26.76 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=8.5
Q ss_pred ccccCCCCCCCCCC
Q 026507 4 SVEANKPEPATGYP 17 (237)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (237)
+.+++.|+||..|.
T Consensus 6 a~~~~~p~~p~~~~ 19 (98)
T PF10164_consen 6 AIPAAPPPPPYPYV 19 (98)
T ss_pred cccCCCCCCCCCee
Confidence 45667666666554
No 15
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=68.87 E-value=49 Score=28.79 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=12.9
Q ss_pred eeEEEEEEEEEEecCCCe
Q 026507 99 TMTATWQLSLRVRNPNRK 116 (237)
Q Consensus 99 ~l~~~~~~~l~~~NPN~~ 116 (237)
.+..+=+++++++|.|..
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 345555688888888885
No 16
>PF14927 Neurensin: Neurensin
Probab=67.75 E-value=8.1 Score=30.35 Aligned_cols=30 Identities=7% Similarity=0.316 Sum_probs=17.5
Q ss_pred ccceehhhHHHHHHHHHHHHHHHHhheeeE
Q 026507 44 FWSRLLCRLFLVVIVIISIMAVASFATWLI 73 (237)
Q Consensus 44 ~~~r~~~~~~~~l~~lill~gv~~li~~lv 73 (237)
+|...++-..+++-++++++|++++++-..
T Consensus 38 ~w~s~~wkV~~i~g~l~Ll~Gi~~l~vgY~ 67 (140)
T PF14927_consen 38 RWSSVCWKVGFISGLLLLLLGIVALTVGYL 67 (140)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444445544555556777788776655333
No 17
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=67.33 E-value=3.3 Score=31.85 Aligned_cols=6 Identities=0% Similarity=0.119 Sum_probs=2.6
Q ss_pred hhHHHH
Q 026507 50 CRLFLV 55 (237)
Q Consensus 50 ~~~~~~ 55 (237)
||++++
T Consensus 1 RW~l~~ 6 (130)
T PF12273_consen 1 RWVLFA 6 (130)
T ss_pred CeeeHH
Confidence 344443
No 18
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=66.60 E-value=24 Score=28.37 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=19.4
Q ss_pred eehhhHHHHHHHHHHHHHHHHhheeeEEe
Q 026507 47 RLLCRLFLVVIVIISIMAVASFATWLILK 75 (237)
Q Consensus 47 r~~~~~~~~l~~lill~gv~~li~~lvlr 75 (237)
+-..+++++++++++++|+.+.++|+..+
T Consensus 15 k~~~~I~liv~ivl~~~a~~~~~~~~~~~ 43 (159)
T COG1580 15 KKSLWILLIVLIVLLALAGAGYFFWFGSK 43 (159)
T ss_pred CceeehHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34666666666667777777777777753
No 19
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=63.96 E-value=74 Score=25.45 Aligned_cols=56 Identities=7% Similarity=0.128 Sum_probs=31.1
Q ss_pred cCCCeeeEEEeceEEEEEECCEE-eeceecCCeeecCCCeEEEEE-EEEe--eeeccChHHHHHHHHH
Q 026507 112 NPNRKLALVYNTLEAAVLYGEWE-LDSTLLPPFSQEKGNETRLHF-QAGL--LSEYVGESVARGIEKE 175 (237)
Q Consensus 112 NPN~~~~i~Y~~~~~~v~Y~g~~-lg~~~vp~f~q~~~~~~~v~~-~l~~--~~~~l~~~~~~~l~~d 175 (237)
--+..+.+.|..+-=+++=+|+. ++.+.+. + + .+.+ ++-+ ++...++++.+.|.+.
T Consensus 80 D~~~~v~V~Y~GilPDlFrEGqgVVaeG~~~----~--g--~F~A~~vLAKHde~YmP~Ev~~al~~~ 139 (155)
T PRK13159 80 DKNAATQVEYTGILPDLFRDNQSVIANGRMQ----G--G--RFVANEVLAKHDETYMPKELKDAMAEG 139 (155)
T ss_pred cCCcEEEEEEccCCCccccCCCeEEEEEEEc----C--C--EEEEeEEEecCCCcCCCHHHHHHHHhc
Confidence 33445777777765566656655 5566653 1 1 3333 2222 3556777777777653
No 20
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=60.86 E-value=68 Score=24.00 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=16.5
Q ss_pred EECCEEeece--ecCCeeecCCCeEEEEEEEEee
Q 026507 129 LYGEWELDST--LLPPFSQEKGNETRLHFQAGLL 160 (237)
Q Consensus 129 ~Y~g~~lg~~--~vp~f~q~~~~~~~v~~~l~~~ 160 (237)
.|++..+|.- .+|+ +...+..+...+...
T Consensus 71 ~~d~aeVGrreV~vp~---~~~~~~~~~v~v~Tt 101 (112)
T PF14155_consen 71 DYDGAEVGRREVLVPP---SGERTVRVTVTVRTT 101 (112)
T ss_pred eCCCCEEEEEEEEECC---CCCcEEEEEEEEEec
Confidence 4677778864 4555 334445555555544
No 21
>PRK05529 cell division protein FtsQ; Provisional
Probab=60.81 E-value=17 Score=31.32 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=28.5
Q ss_pred CCEEEEeeeeeeeeccCC------------CCc--------------eeEEEEEEEEEEecCCCeeeEEEec
Q 026507 78 FPEFRVDSASIAQLNTTS------------ANS--------------TMTATWQLSLRVRNPNRKLALVYNT 123 (237)
Q Consensus 78 ~P~f~V~~~~v~~~~~~~------------~~~--------------~l~~~~~~~l~~~NPN~~~~i~Y~~ 123 (237)
.|.|.|.++.|++-...+ +.+ .+-.-=+++++-+.||. +.|+...
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEE
Confidence 489999999998654211 111 12234467788889998 7776643
No 22
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=56.59 E-value=48 Score=26.41 Aligned_cols=18 Identities=6% Similarity=-0.258 Sum_probs=12.1
Q ss_pred eEEEeceEEEEEECCEEe
Q 026507 118 ALVYNTLEAAVLYGEWEL 135 (237)
Q Consensus 118 ~i~Y~~~~~~v~Y~g~~l 135 (237)
+-+|=.+++++.+.+...
T Consensus 77 ~~rylkv~i~L~~~~~~~ 94 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEAT 94 (162)
T ss_pred CceEEEEEEEEEECCHHH
Confidence 357777777777776543
No 23
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=52.87 E-value=30 Score=26.19 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=20.5
Q ss_pred eEEEEEEEEEEecCCCeeeEEEeceEEE
Q 026507 100 MTATWQLSLRVRNPNRKLALVYNTLEAA 127 (237)
Q Consensus 100 l~~~~~~~l~~~NPN~~~~i~Y~~~~~~ 127 (237)
-..++..++.+.||.. +++..+.+.++
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 3567888888999988 78877766654
No 24
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=52.69 E-value=4.6 Score=30.11 Aligned_cols=20 Identities=5% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 026507 50 CRLFLVVIVIISIMAVASFA 69 (237)
Q Consensus 50 ~~~~~~l~~lill~gv~~li 69 (237)
.|+.+++..+++++.+++++
T Consensus 29 k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 29 KCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp --------------------
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444
No 25
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=51.94 E-value=1.2e+02 Score=24.13 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=36.8
Q ss_pred EEEEEEEecCCCeeeEEEeceEEEEEECCEE-eeceecCCeeecCCCeEEEEE--EE-EeeeeccChHHHHHHHH
Q 026507 104 WQLSLRVRNPNRKLALVYNTLEAAVLYGEWE-LDSTLLPPFSQEKGNETRLHF--QA-GLLSEYVGESVARGIEK 174 (237)
Q Consensus 104 ~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~-lg~~~vp~f~q~~~~~~~v~~--~l-~~~~~~l~~~~~~~l~~ 174 (237)
+.+.+.+.--|..+.+.|..+-=+++-.|+. ++.+.+.. + ..+.+ .+ .=+....++++.++|+.
T Consensus 72 ~~v~F~vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~~~~----~---~~f~A~~vLAKHdEnY~P~ev~~~mk~ 139 (153)
T COG2332 72 LKVSFVVTDGNKSVTVSYEGILPDLFREGQGVVAEGQLQG----G---GVFEAKEVLAKHDENYTPPEVAKAMKK 139 (153)
T ss_pred cEEEEEEecCCceEEEEEeccCchhhhcCCeEEEEEEecC----C---CEEEeeehhhcCCcccCCHHHHHHhhh
Confidence 3344444466777888888877777777776 56666521 1 12222 11 12344567777777765
No 26
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=51.93 E-value=1e+02 Score=23.23 Aligned_cols=64 Identities=8% Similarity=0.006 Sum_probs=36.0
Q ss_pred EeeceecCCeeecCCCeE-EEEEEEEeeeeccChHHHHHHHHHHh-CCeEEEEEEEEEEEEEEEEEEEEeee
Q 026507 134 ELDSTLLPPFSQEKGNET-RLHFQAGLLSEYVGESVARGIEKERA-RGEVEFGIGVYGWVRYKARWWSMRWR 203 (237)
Q Consensus 134 ~lg~~~vp~f~q~~~~~~-~v~~~l~~~~~~l~~~~~~~l~~d~~-~G~v~l~v~v~~~vr~~vg~~~~~~~ 203 (237)
.+|...+|+.......+. ..+..+.. .+.+...++..+.- ...+.+.++ ++.+.++|.++....
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i----~d~~~f~~f~~~~~~~~~~~l~l~--g~~~~~~g~l~~~~i 67 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTI----TDQDAFTQFVTALLFNEEVTLTLR--GKTDTHLGGLPFSGI 67 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEe----cCHHHHHHHHHHHHhCCcEEEEEE--EeeeEEEccEEEEEE
Confidence 467788999888222222 22223332 24455677777753 455555555 545777787755433
No 27
>PHA02819 hypothetical protein; Provisional
Probab=50.99 E-value=18 Score=24.82 Aligned_cols=26 Identities=8% Similarity=0.329 Sum_probs=10.5
Q ss_pred ceehhhHHHHHHHHHHHHHHHHhhee
Q 026507 46 SRLLCRLFLVVIVIISIMAVASFATW 71 (237)
Q Consensus 46 ~r~~~~~~~~l~~lill~gv~~li~~ 71 (237)
+++..|..+++++++++++++.+++|
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~~flY 66 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIFIIFY 66 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444544443433333333333333
No 28
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=50.98 E-value=12 Score=21.82 Aligned_cols=15 Identities=13% Similarity=0.468 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhheee
Q 026507 58 VIISIMAVASFATWL 72 (237)
Q Consensus 58 ~lill~gv~~li~~l 72 (237)
..+.++++.++++|+
T Consensus 10 ~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 10 GVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHH
Confidence 345555666777774
No 29
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=50.28 E-value=92 Score=24.01 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=31.7
Q ss_pred eEEEEEEEEEEecCCCeeeEEEeceEEEEE-ECCEEeeceec
Q 026507 100 MTATWQLSLRVRNPNRKLALVYNTLEAAVL-YGEWELDSTLL 140 (237)
Q Consensus 100 l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~-Y~g~~lg~~~v 140 (237)
-+-.+.++.+++|... ....|-.++++++ -+|+.+++-.+
T Consensus 66 ~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 66 GPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred CCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEE
Confidence 3466888899999998 6899999999998 66667776544
No 30
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=48.56 E-value=8.1 Score=34.29 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhheeeEEec
Q 026507 55 VVIVIISIMAVASFATWLILKP 76 (237)
Q Consensus 55 ~l~~lill~gv~~li~~lvlrP 76 (237)
+.+++++++.++++|+||+||=
T Consensus 260 aSiiaIliIVLIMvIIYLILRY 281 (299)
T PF02009_consen 260 ASIIAILIIVLIMVIIYLILRY 281 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555677888888863
No 31
>PHA03054 IMV membrane protein; Provisional
Probab=45.63 E-value=22 Score=24.46 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=9.6
Q ss_pred eehhhHHHHHHHHHHHHHHHHhhee
Q 026507 47 RLLCRLFLVVIVIISIMAVASFATW 71 (237)
Q Consensus 47 r~~~~~~~~l~~lill~gv~~li~~ 71 (237)
++..|..+++++++++++++.+++|
T Consensus 44 ~~~~~~~~ii~l~~v~~~~l~~flY 68 (72)
T PHA03054 44 GCWGWYWLIIIFFIVLILLLLIYLY 68 (72)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333333333333
No 32
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=45.33 E-value=35 Score=27.93 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=10.9
Q ss_pred EEeceEEEEEECCEE
Q 026507 120 VYNTLEAAVLYGEWE 134 (237)
Q Consensus 120 ~Y~~~~~~v~Y~g~~ 134 (237)
+|=.+.+++-+.+..
T Consensus 103 ryLkv~i~Le~~~~~ 117 (182)
T PRK08455 103 RYLKTSISLELSNEK 117 (182)
T ss_pred eEEEEEEEEEECCHh
Confidence 777778888776654
No 33
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.08 E-value=15 Score=29.21 Aligned_cols=31 Identities=16% Similarity=0.508 Sum_probs=20.6
Q ss_pred eehhhHHHHHHHHHHHHHHHHhheeeEEecC
Q 026507 47 RLLCRLFLVVIVIISIMAVASFATWLILKPE 77 (237)
Q Consensus 47 r~~~~~~~~l~~lill~gv~~li~~lvlrP~ 77 (237)
|.+-++...+++++++++.+++++|..++|.
T Consensus 4 k~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 4 KHLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred eEeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 3444555555556666677788889888874
No 34
>PHA02844 putative transmembrane protein; Provisional
Probab=44.46 E-value=31 Score=24.00 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=12.2
Q ss_pred ceehhhHHHHHHHHHHHHHHHHhheee
Q 026507 46 SRLLCRLFLVVIVIISIMAVASFATWL 72 (237)
Q Consensus 46 ~r~~~~~~~~l~~lill~gv~~li~~l 72 (237)
+++..|..+++++++++++++.+++||
T Consensus 43 ~~~~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 43 VCSSSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444444444444444444454
No 35
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=43.76 E-value=13 Score=28.10 Aligned_cols=12 Identities=0% Similarity=-0.045 Sum_probs=7.5
Q ss_pred HhheeeEEecCC
Q 026507 67 SFATWLILKPEF 78 (237)
Q Consensus 67 ~li~~lvlrP~~ 78 (237)
++++|+.+||..
T Consensus 13 ~~i~yf~iRPQk 24 (113)
T PRK06531 13 LGLIFFMQRQQK 24 (113)
T ss_pred HHHHHheechHH
Confidence 334567799953
No 36
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=43.68 E-value=29 Score=26.12 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhheeeEEec
Q 026507 53 FLVVIVIISIMAVASFATWLILKP 76 (237)
Q Consensus 53 ~~~l~~lill~gv~~li~~lvlrP 76 (237)
+..++++++.++++.++++|+++-
T Consensus 65 vglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 65 VGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHheeec
Confidence 334556667777788888888764
No 37
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=43.55 E-value=26 Score=23.72 Aligned_cols=16 Identities=44% Similarity=0.866 Sum_probs=11.5
Q ss_pred HHHHHHhheeeEEecC
Q 026507 62 IMAVASFATWLILKPE 77 (237)
Q Consensus 62 l~gv~~li~~lvlrP~ 77 (237)
+.+.+..+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 3444666779999987
No 38
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.88 E-value=11 Score=28.81 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=8.4
Q ss_pred HHHHHHhheeeEEec-CCCEEEEee
Q 026507 62 IMAVASFATWLILKP-EFPEFRVDS 85 (237)
Q Consensus 62 l~gv~~li~~lvlrP-~~P~f~V~~ 85 (237)
++|+++||+|++.|= |+....++.
T Consensus 77 vIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCC
Confidence 345556666666642 444444433
No 39
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=42.72 E-value=13 Score=20.28 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=10.8
Q ss_pred HHHHHHHHHhheeeEEecCC
Q 026507 59 IISIMAVASFATWLILKPEF 78 (237)
Q Consensus 59 lill~gv~~li~~lvlrP~~ 78 (237)
+++.+++.+-.+|-.++|.+
T Consensus 5 ~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 5 GIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 34444445555566667753
No 40
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=42.57 E-value=26 Score=22.97 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=9.0
Q ss_pred HHHhheeeEEecC
Q 026507 65 VASFATWLILKPE 77 (237)
Q Consensus 65 v~~li~~lvlrP~ 77 (237)
++++++|+..||+
T Consensus 44 ~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 44 FIVVFVYLKTRPR 56 (56)
T ss_pred HHhheeEEeccCC
Confidence 3556678888874
No 41
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=42.52 E-value=26 Score=29.99 Aligned_cols=14 Identities=21% Similarity=0.586 Sum_probs=9.8
Q ss_pred HHHHHhheeeEEec
Q 026507 63 MAVASFATWLILKP 76 (237)
Q Consensus 63 ~gv~~li~~lvlrP 76 (237)
..+++.+.|+.+||
T Consensus 235 sl~~Ia~aW~~yRP 248 (248)
T PF07787_consen 235 SLLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHHhheeeCc
Confidence 33456677999997
No 42
>PHA02650 hypothetical protein; Provisional
Probab=42.24 E-value=30 Score=24.37 Aligned_cols=27 Identities=4% Similarity=-0.052 Sum_probs=11.2
Q ss_pred ceehhhHHHHHHHHHHHHHHHHhheee
Q 026507 46 SRLLCRLFLVVIVIISIMAVASFATWL 72 (237)
Q Consensus 46 ~r~~~~~~~~l~~lill~gv~~li~~l 72 (237)
+++..|..+++++++++++++.+++||
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333444444
No 43
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=41.40 E-value=36 Score=21.42 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhheeeEEec
Q 026507 53 FLVVIVIISIMAVASFATWLILKP 76 (237)
Q Consensus 53 ~~~l~~lill~gv~~li~~lvlrP 76 (237)
++++.+..+++++....+|..+-|
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCC
Confidence 445566677788888888988876
No 44
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=41.02 E-value=37 Score=24.93 Aligned_cols=15 Identities=7% Similarity=0.381 Sum_probs=6.4
Q ss_pred HHHHHHHHhheeeEE
Q 026507 60 ISIMAVASFATWLIL 74 (237)
Q Consensus 60 ill~gv~~li~~lvl 74 (237)
+.++.++.+|.|+++
T Consensus 72 v~IlVily~IyYFVI 86 (101)
T PF06024_consen 72 VCILVILYAIYYFVI 86 (101)
T ss_pred HHHHHHHhhheEEEE
Confidence 333333444555444
No 45
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=40.95 E-value=24 Score=31.66 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=4.9
Q ss_pred CCCeeeEEEe
Q 026507 113 PNRKLALVYN 122 (237)
Q Consensus 113 PN~~~~i~Y~ 122 (237)
|+.-+-|+|+
T Consensus 137 ~gD~LvfHYS 146 (362)
T KOG1546|consen 137 PGDSLVFHYS 146 (362)
T ss_pred CCCEEEEEec
Confidence 3444555554
No 46
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=40.59 E-value=27 Score=21.68 Aligned_cols=23 Identities=13% Similarity=0.483 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhheeeEEec
Q 026507 54 LVVIVIISIMAVASFATWLILKP 76 (237)
Q Consensus 54 ~~l~~lill~gv~~li~~lvlrP 76 (237)
+++.+..+++++....+|..+-|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCC
Confidence 45556677778888888999876
No 47
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=40.44 E-value=29 Score=36.51 Aligned_cols=33 Identities=21% Similarity=0.072 Sum_probs=16.2
Q ss_pred CCeEEEEEEEEEEEEEEE---EEEEEeeeEEEEEcC
Q 026507 178 RGEVEFGIGVYGWVRYKA---RWWSMRWRFMNVYCN 210 (237)
Q Consensus 178 ~G~v~l~v~v~~~vr~~v---g~~~~~~~~~~v~C~ 210 (237)
+|-+.+-.+.-.+-.+++ |.+.++...+.+.|.
T Consensus 319 n~i~rii~r~pi~~ey~vafp~lynsrprsvav~~y 354 (2365)
T COG5178 319 NGIVRIIRRPPIDDEYPVAFPGLYNSRPRSVAVECY 354 (2365)
T ss_pred cceeeEEEeCCcCCccccccchhhcCcccceeeecc
Confidence 344444434333333433 345556666677665
No 48
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.26 E-value=70 Score=28.94 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=9.5
Q ss_pred EEEECCEEeecee
Q 026507 127 AVLYGEWELDSTL 139 (237)
Q Consensus 127 ~v~Y~g~~lg~~~ 139 (237)
.|.|.|..||...
T Consensus 58 ~V~~~GV~VG~V~ 70 (359)
T COG1463 58 PVRYRGVKVGKVA 70 (359)
T ss_pred ceEEcCEEeEEEE
Confidence 4578888888754
No 49
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.69 E-value=12 Score=33.11 Aligned_cols=7 Identities=14% Similarity=0.472 Sum_probs=2.9
Q ss_pred ehhhHHH
Q 026507 48 LLCRLFL 54 (237)
Q Consensus 48 ~~~~~~~ 54 (237)
|+|++++
T Consensus 272 ~i~ii~~ 278 (297)
T KOG0810|consen 272 IIIIIIL 278 (297)
T ss_pred eeeehHH
Confidence 4444333
No 50
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=39.60 E-value=39 Score=21.96 Aligned_cols=26 Identities=31% Similarity=0.195 Sum_probs=11.5
Q ss_pred CccceehhhHHHHHHHHHHHHHHHHh
Q 026507 43 SFWSRLLCRLFLVVIVIISIMAVASF 68 (237)
Q Consensus 43 p~~~r~~~~~~~~l~~lill~gv~~l 68 (237)
+-+.+++..+.-.++.++++++++.+
T Consensus 35 s~~~~~l~~~~~p~~~iL~~~a~is~ 60 (64)
T smart00831 35 SPLLRFLRQFHNPLIYILLAAAVLSA 60 (64)
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34445555544444444444444433
No 51
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=39.54 E-value=35 Score=30.94 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCC
Q 026507 21 AYAAPPPQPQVA 32 (237)
Q Consensus 21 ~~~~~~p~~~~~ 32 (237)
|.+|+||++++.
T Consensus 270 G~pP~pp~~~qq 281 (498)
T KOG4849|consen 270 GNPPLPPQQIQQ 281 (498)
T ss_pred CCCCCCchhhcc
Confidence 444555544443
No 52
>PTZ00116 signal peptidase; Provisional
Probab=37.54 E-value=1.1e+02 Score=25.32 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=9.9
Q ss_pred cCCCEEEEeeeeeeeecc
Q 026507 76 PEFPEFRVDSASIAQLNT 93 (237)
Q Consensus 76 P~~P~f~V~~~~v~~~~~ 93 (237)
...|..+++-.+|..+..
T Consensus 36 ~~~~~~~i~v~~V~~~~~ 53 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVY 53 (185)
T ss_pred CCCceeeEEEeecccccc
Confidence 345656665555556653
No 53
>CHL00020 psbN photosystem II protein N
Probab=37.22 E-value=39 Score=20.95 Aligned_cols=24 Identities=4% Similarity=0.254 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhheeeEEec
Q 026507 53 FLVVIVIISIMAVASFATWLILKP 76 (237)
Q Consensus 53 ~~~l~~lill~gv~~li~~lvlrP 76 (237)
++++++..+++++....+|..+-|
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCC
Confidence 445556677778888888888876
No 54
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=37.06 E-value=97 Score=28.40 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=14.6
Q ss_pred ceehhhHHHHHHHHHHHHHHHHhheee
Q 026507 46 SRLLCRLFLVVIVIISIMAVASFATWL 72 (237)
Q Consensus 46 ~r~~~~~~~~l~~lill~gv~~li~~l 72 (237)
+|-.+-...++++++.+++++++++|+
T Consensus 80 rrsvrEg~VGlfvL~gi~ll~~~~~~L 106 (370)
T PLN03094 80 KRSVWEGGVGLFLLSGAALLALTLAWL 106 (370)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555554
No 55
>PHA03049 IMV membrane protein; Provisional
Probab=36.94 E-value=16 Score=24.76 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhheeeEEe
Q 026507 55 VVIVIISIMAVASFATWLILK 75 (237)
Q Consensus 55 ~l~~lill~gv~~li~~lvlr 75 (237)
-++++++.++++++|+|-+++
T Consensus 4 d~~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566777778888888774
No 56
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=36.88 E-value=24 Score=22.30 Aligned_cols=23 Identities=4% Similarity=-0.090 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhheeeEEecC
Q 026507 55 VVIVIISIMAVASFATWLILKPE 77 (237)
Q Consensus 55 ~l~~lill~gv~~li~~lvlrP~ 77 (237)
..++++.++++.+.+++.+++|+
T Consensus 12 ~~~~l~~~~~~Figiv~wa~~p~ 34 (48)
T cd01324 12 DSWGLLYLALFFLGVVVWAFRPG 34 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 34445444555556666677775
No 57
>PRK14758 hypothetical protein; Provisional
Probab=36.31 E-value=65 Score=17.71 Aligned_cols=20 Identities=20% Similarity=0.462 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhheee
Q 026507 53 FLVVIVIISIMAVASFATWL 72 (237)
Q Consensus 53 ~~~l~~lill~gv~~li~~l 72 (237)
|=.+++++++.|+++.-+|+
T Consensus 7 FEliLivlIlCalia~~fy~ 26 (27)
T PRK14758 7 FEFILIILILCALIAARFYL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44445555666666665554
No 58
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=36.28 E-value=31 Score=27.50 Aligned_cols=21 Identities=0% Similarity=0.145 Sum_probs=13.9
Q ss_pred HHHHHHHHhheeeEEecCCCE
Q 026507 60 ISIMAVASFATWLILKPEFPE 80 (237)
Q Consensus 60 ill~gv~~li~~lvlrP~~P~ 80 (237)
.++++++++++|+..|.+.=.
T Consensus 61 ~ill~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTD 81 (154)
T ss_pred HHHHHHHHhheeEEEecccCc
Confidence 344566777788888887533
No 59
>PHA03283 envelope glycoprotein E; Provisional
Probab=35.73 E-value=77 Score=30.32 Aligned_cols=13 Identities=8% Similarity=0.325 Sum_probs=8.0
Q ss_pred HHHHHhheeeEEe
Q 026507 63 MAVASFATWLILK 75 (237)
Q Consensus 63 ~gv~~li~~lvlr 75 (237)
++++++++|.-++
T Consensus 412 ~~~~~l~vw~c~~ 424 (542)
T PHA03283 412 ALLVALVVWGCIL 424 (542)
T ss_pred HHHHHHhhhheee
Confidence 4456666776555
No 60
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=35.71 E-value=25 Score=28.14 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=10.9
Q ss_pred HHHHHHHHhheeeEEec
Q 026507 60 ISIMAVASFATWLILKP 76 (237)
Q Consensus 60 ill~gv~~li~~lvlrP 76 (237)
++++|+++.++|+.+||
T Consensus 12 l~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHHhhhhccCC
Confidence 33334344778989998
No 61
>PHA02692 hypothetical protein; Provisional
Probab=35.27 E-value=42 Score=23.08 Aligned_cols=9 Identities=0% Similarity=-0.226 Sum_probs=3.6
Q ss_pred eehhhHHHH
Q 026507 47 RLLCRLFLV 55 (237)
Q Consensus 47 r~~~~~~~~ 55 (237)
+...|..++
T Consensus 41 ~~~~~~~~i 49 (70)
T PHA02692 41 KGVPWTTVF 49 (70)
T ss_pred CCcchHHHH
Confidence 344444333
No 62
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=34.35 E-value=2.3e+02 Score=22.35 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=27.6
Q ss_pred EEEEEecCCCeeeEEEeceEEEEEECCEE-eeceecCCeeecCCCeEEEEE-EEEe--eeeccChHHHHHHHHH
Q 026507 106 LSLRVRNPNRKLALVYNTLEAAVLYGEWE-LDSTLLPPFSQEKGNETRLHF-QAGL--LSEYVGESVARGIEKE 175 (237)
Q Consensus 106 ~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~-lg~~~vp~f~q~~~~~~~v~~-~l~~--~~~~l~~~~~~~l~~d 175 (237)
+++.+...+..+.+.|+..-=+.+=+|+. +..+.+.+ . + .+.+ .+-. ++...++++.++|.++
T Consensus 73 ~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~VVv~G~~~~----~-g--~F~A~~vLaKc~skY~p~ev~~~~~~~ 139 (148)
T PRK13254 73 VRFVVTDGNATVPVVYTGILPDLFREGQGVVAEGRLQD----G-G--VFVADEVLAKHDENYMPKEVADALKKA 139 (148)
T ss_pred EEEEEEeCCeEEEEEECCCCCccccCCCEEEEEEEECC----C-C--eEEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 33444444555566665543333333433 44444421 1 1 2222 2222 2445566666666553
No 63
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=34.28 E-value=13 Score=28.10 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=0.0
Q ss_pred ccceehhhHHHHHHHHHHHHHHHHhheeeEEe
Q 026507 44 FWSRLLCRLFLVVIVIISIMAVASFATWLILK 75 (237)
Q Consensus 44 ~~~r~~~~~~~~l~~lill~gv~~li~~lvlr 75 (237)
+++|.+.+..+.+++.++++|-+ +.+|++|.
T Consensus 27 s~sra~~vagltvLa~LLiAGQa-~TaYfv~~ 57 (114)
T PF09307_consen 27 SCSRALKVAGLTVLACLLIAGQA-VTAYFVFQ 57 (114)
T ss_dssp --------------------------------
T ss_pred CccchhHHHHHHHHHHHHHHhHH-HHHHHHHH
Confidence 44566666666666667777755 44577775
No 64
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=33.90 E-value=19 Score=24.58 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhheeeEEe
Q 026507 55 VVIVIISIMAVASFATWLILK 75 (237)
Q Consensus 55 ~l~~lill~gv~~li~~lvlr 75 (237)
-++++++.++++++|+|-++.
T Consensus 4 d~iLi~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566677778888887774
No 65
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=33.68 E-value=11 Score=20.75 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=10.1
Q ss_pred HHHHHHHHHhheeeEEecC
Q 026507 59 IISIMAVASFATWLILKPE 77 (237)
Q Consensus 59 lill~gv~~li~~lvlrP~ 77 (237)
+++.+++.+.++|-.+||.
T Consensus 4 ~~l~~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 4 LVLAVGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 3444444455555566775
No 66
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=32.05 E-value=28 Score=21.83 Aligned_cols=15 Identities=7% Similarity=-0.017 Sum_probs=8.0
Q ss_pred HHHHHhheeeEEecC
Q 026507 63 MAVASFATWLILKPE 77 (237)
Q Consensus 63 ~gv~~li~~lvlrP~ 77 (237)
+++.+++++.+++|+
T Consensus 19 ~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHccc
Confidence 333444555566776
No 67
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.99 E-value=42 Score=24.50 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhe
Q 026507 59 IISIMAVASFAT 70 (237)
Q Consensus 59 lill~gv~~li~ 70 (237)
|.+++++++||.
T Consensus 9 L~l~LA~lLlis 20 (95)
T PF07172_consen 9 LGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 68
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=31.85 E-value=28 Score=20.85 Aligned_cols=9 Identities=22% Similarity=0.504 Sum_probs=4.9
Q ss_pred HHhheeeEE
Q 026507 66 ASFATWLIL 74 (237)
Q Consensus 66 ~~li~~lvl 74 (237)
.++|+|+++
T Consensus 24 mliif~f~l 32 (43)
T PF11395_consen 24 MLIIFWFSL 32 (43)
T ss_pred HHHHHHHHH
Confidence 445566655
No 69
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=31.83 E-value=74 Score=23.91 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=30.5
Q ss_pred hheeeEEec-CCCEEEEeeeeeeeeccCCCCceeEEEEEEEEEEecCCC----eeeEEEec--eEEEEEECC
Q 026507 68 FATWLILKP-EFPEFRVDSASIAQLNTTSANSTMTATWQLSLRVRNPNR----KLALVYNT--LEAAVLYGE 132 (237)
Q Consensus 68 li~~lvlrP-~~P~f~V~~~~v~~~~~~~~~~~l~~~~~~~l~~~NPN~----~~~i~Y~~--~~~~v~Y~g 132 (237)
+..++-+.| -+-+..|.+..-++.-....+..+.. ..-++-+.||+. .+.++|++ ..+.+.|++
T Consensus 15 ~~Y~~~y~PTNK~ql~v~~~~~~~~i~k~~d~~~~~-~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~ 85 (109)
T PF06129_consen 15 LCYFFNYYPTNKMQLAVRELNYENAIIKQQDDNLPK-LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKN 85 (109)
T ss_pred HHHHHhhccchHHHHhhcccchhhHHHhcccccCcc-ceeeEEecCCCcccccceEEEEccCCCeEEEEECC
Confidence 334556666 34445555443332211111223333 445566777773 34566665 345555655
No 70
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=31.07 E-value=22 Score=32.26 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhheeeEEecC
Q 026507 57 IVIISIMAVASFATWLILKPE 77 (237)
Q Consensus 57 ~~lill~gv~~li~~lvlrP~ 77 (237)
+++++++.++.+|+||+||=|
T Consensus 316 iIAIvvIVLIMvIIYLILRYR 336 (353)
T TIGR01477 316 IIAILIIVLIMVIIYLILRYR 336 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344455555778889999753
No 71
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=30.92 E-value=2.3e+02 Score=27.20 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=47.7
Q ss_pred CCEEEEeeeeeeeeccCCCCceeEEEEEEEEEEecCCCeeeEEEeceEEEEEECCEEeeceecCCeeecCCCeEEEEEEE
Q 026507 78 FPEFRVDSASIAQLNTTSANSTMTATWQLSLRVRNPNRKLALVYNTLEAAVLYGEWELDSTLLPPFSQEKGNETRLHFQA 157 (237)
Q Consensus 78 ~P~f~V~~~~v~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~l 157 (237)
+-++++.++++.++.+++ +.+.+++-+.+ +..+++.+.+ |+|.-=+.+.+.. ......+++..
T Consensus 439 ~~~l~~~~l~~~~l~i~~----------~~~~~~~~~G~--l~l~~l~~~l-~~G~~~~~~~ld~----~~~~~~~~~~~ 501 (604)
T PF05170_consen 439 DLTLSAGSLKANGLPISN----------LKLQLKAKDGL--LTLDPLSAKL-YGGSLSGSASLDA----RQDPPQYSLNL 501 (604)
T ss_pred eEEEEhhheEECCceecc----------cEEEEEecCCe--EEEeeeeEec-CCcEEEEEEEEec----cCCCccEEEee
Confidence 556667777776666543 22334444443 4445666665 6776655555521 22333455556
Q ss_pred EeeeeccChHHHHHHHH-HHhCCeEEEEEEEEEE
Q 026507 158 GLLSEYVGESVARGIEK-ERARGEVEFGIGVYGW 190 (237)
Q Consensus 158 ~~~~~~l~~~~~~~l~~-d~~~G~v~l~v~v~~~ 190 (237)
.++++++..- ..++.. +.-.|...+++.++++
T Consensus 502 ~~~~v~l~~L-l~~~~~~~~l~G~~~~~~~l~g~ 534 (604)
T PF05170_consen 502 NLRGVQLQPL-LQDLALPDPLSGTGDLNLDLTGQ 534 (604)
T ss_pred eeCCcchHHH-HhhhccccCceEEEEEEEEEEeC
Confidence 6666655432 222222 2335555555555443
No 72
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=30.55 E-value=1.1e+02 Score=23.35 Aligned_cols=8 Identities=25% Similarity=0.850 Sum_probs=2.7
Q ss_pred CCeeeEEE
Q 026507 114 NRKLALVY 121 (237)
Q Consensus 114 N~~~~i~Y 121 (237)
+..+.+.|
T Consensus 81 ~~~i~V~Y 88 (131)
T PF03100_consen 81 GKEIPVVY 88 (131)
T ss_dssp S-EEEEEE
T ss_pred CcEEEEEE
Confidence 43333433
No 73
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=30.42 E-value=26 Score=34.94 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=21.2
Q ss_pred eehhhHHHHHHHHHHHHHHHHhheeeEEecCCCEEE
Q 026507 47 RLLCRLFLVVIVIISIMAVASFATWLILKPEFPEFR 82 (237)
Q Consensus 47 r~~~~~~~~l~~lill~gv~~li~~lvlrP~~P~f~ 82 (237)
|++++++.++++++++.+.+++++++.+.+..|.+.
T Consensus 3 r~i~~~l~i~~~~~l~g~~~~~~~~~~~~~dLPd~~ 38 (797)
T COG5009 3 KLIKYLLGILVTLILLGAGALAGLYLYISPDLPDVE 38 (797)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChH
Confidence 445555555555555555556666667777777543
No 74
>PTZ00046 rifin; Provisional
Probab=30.41 E-value=23 Score=32.23 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhheeeEEecC
Q 026507 57 IVIISIMAVASFATWLILKPE 77 (237)
Q Consensus 57 ~~lill~gv~~li~~lvlrP~ 77 (237)
+++++++.++.+|+||+||=|
T Consensus 321 iiAIvVIVLIMvIIYLILRYR 341 (358)
T PTZ00046 321 IVAIVVIVLIMVIIYLILRYR 341 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344555555778889999753
No 75
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=30.22 E-value=49 Score=28.61 Aligned_cols=8 Identities=0% Similarity=-0.048 Sum_probs=4.5
Q ss_pred cccCCccc
Q 026507 39 FRLASFWS 46 (237)
Q Consensus 39 ~~~~p~~~ 46 (237)
.+++|+++
T Consensus 177 lARCPHCr 184 (256)
T PF09788_consen 177 LARCPHCR 184 (256)
T ss_pred cccCCCCc
Confidence 44667653
No 76
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=29.65 E-value=30 Score=19.56 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=10.1
Q ss_pred HHHHHHHHHhheeeEEecC
Q 026507 59 IISIMAVASFATWLILKPE 77 (237)
Q Consensus 59 lill~gv~~li~~lvlrP~ 77 (237)
.++.+|+.+-+++-.+||.
T Consensus 9 ~~va~~L~vYL~~ALlrPE 27 (29)
T PRK14759 9 GAVSLGLLIYLTYALLRPE 27 (29)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 3444444445555566875
No 77
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=29.50 E-value=1.8e+02 Score=23.72 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=5.8
Q ss_pred EecCCCEEEEe
Q 026507 74 LKPEFPEFRVD 84 (237)
Q Consensus 74 lrP~~P~f~V~ 84 (237)
+.+..|..++.
T Consensus 32 ~~~~~~~~~i~ 42 (175)
T PF04573_consen 32 FHPPSPSVSIS 42 (175)
T ss_pred ccCCCCceEEE
Confidence 55555555543
No 78
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=29.44 E-value=1.6e+02 Score=23.61 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=11.2
Q ss_pred EEEeceEEEEEECCEE
Q 026507 119 LVYNTLEAAVLYGEWE 134 (237)
Q Consensus 119 i~Y~~~~~~v~Y~g~~ 134 (237)
.+|=.+.+.+.+.+..
T Consensus 86 ~ryLkv~i~L~~~~~~ 101 (166)
T PRK12785 86 VQYLKLKVVLEVKDEK 101 (166)
T ss_pred ceEEEEEEEEEECCHH
Confidence 4777777777777654
No 79
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=29.34 E-value=43 Score=28.31 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=9.2
Q ss_pred HHHHHhheeeEEecCCCEE
Q 026507 63 MAVASFATWLILKPEFPEF 81 (237)
Q Consensus 63 ~gv~~li~~lvlrP~~P~f 81 (237)
+|..++..+-++|||.-..
T Consensus 172 ~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 172 IGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred hhcceEEEEEEeccccccc
Confidence 3333333334667765543
No 80
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.00 E-value=64 Score=27.17 Aligned_cols=23 Identities=13% Similarity=0.420 Sum_probs=13.1
Q ss_pred eehhhHHHHHHHHHHHHHHHHhh
Q 026507 47 RLLCRLFLVVIVIISIMAVASFA 69 (237)
Q Consensus 47 r~~~~~~~~l~~lill~gv~~li 69 (237)
+..-.+|+++|.++++++.++++
T Consensus 127 K~amLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 127 KMAMLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655444
No 81
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=28.83 E-value=1.1e+02 Score=26.39 Aligned_cols=12 Identities=8% Similarity=-0.086 Sum_probs=7.2
Q ss_pred EEEECCEEeece
Q 026507 127 AVLYGEWELDST 138 (237)
Q Consensus 127 ~v~Y~g~~lg~~ 138 (237)
.|.|+|.++|..
T Consensus 50 ~V~~~Gv~VG~V 61 (291)
T TIGR00996 50 KVRVRGVPVGKV 61 (291)
T ss_pred ceEEcceEEEEE
Confidence 356667666653
No 82
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=28.73 E-value=58 Score=28.14 Aligned_cols=34 Identities=15% Similarity=0.430 Sum_probs=24.4
Q ss_pred HHHHHHHHHhheeeEEecCCCEEEEeeeeeeeec
Q 026507 59 IISIMAVASFATWLILKPEFPEFRVDSASIAQLN 92 (237)
Q Consensus 59 lill~gv~~li~~lvlrP~~P~f~V~~~~v~~~~ 92 (237)
+++++++.++++|...-++.|.|.+..+.+++=+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn~ 71 (269)
T COG1589 38 YLVLLLLVLVVLWVLILLSLPYFPIRKVSVSGNN 71 (269)
T ss_pred HHHHHHHHHHHHheehhhhcCCccceEEEEecCc
Confidence 3344445666778888888898999999987543
No 83
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=27.22 E-value=94 Score=25.49 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhheeeEEecCCC
Q 026507 49 LCRLFLVVIVIISIMAVASFATWLILKPEFP 79 (237)
Q Consensus 49 ~~~~~~~l~~lill~gv~~li~~lvlrP~~P 79 (237)
+.|.|++|+++ ++++++.+++.++.|..+
T Consensus 3 WK~aF~~Lla~--~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 3 WKWAFLILLAL--NLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHH--HHHHHhheeeEEEccCCC
Confidence 45666654443 444566677788888865
No 84
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=26.77 E-value=2.1e+02 Score=19.52 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=13.5
Q ss_pred EEEecCCCeeeEEEeceEEEEEEC
Q 026507 108 LRVRNPNRKLALVYNTLEAAVLYG 131 (237)
Q Consensus 108 l~~~NPN~~~~i~Y~~~~~~v~Y~ 131 (237)
+.++|-.. -.+..+++++.+.-.
T Consensus 56 v~i~h~gG-d~l~~~~l~i~v~~~ 78 (80)
T PF07790_consen 56 VTITHEGG-DPLDVDDLKIVVDGN 78 (80)
T ss_pred EEEEEcCC-CCcccceEEEEEecC
Confidence 66666665 356666666655443
No 85
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=26.75 E-value=1.5e+02 Score=20.85 Aligned_cols=7 Identities=0% Similarity=0.415 Sum_probs=3.1
Q ss_pred HHHHHhh
Q 026507 63 MAVASFA 69 (237)
Q Consensus 63 ~gv~~li 69 (237)
+|+++++
T Consensus 33 lGi~Ai~ 39 (82)
T PF04505_consen 33 LGIVAIV 39 (82)
T ss_pred HHHHHhe
Confidence 4444444
No 86
>PF11125 DUF2830: Protein of unknown function (DUF2830); InterPro: IPR022599 This entry represents putative lysis proteins from Bacteriophage MS2 and Bacteriophage BZ13. The bacteriophage MS2 lysin protein COM1L5 from SWISSPROT was identified as an overlapping cistron in the bacteriophage MS2 RNA [].
Probab=26.49 E-value=82 Score=20.02 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=13.2
Q ss_pred CcccCCccceehhhHHHHHH
Q 026507 38 PFRLASFWSRLLCRLFLVVI 57 (237)
Q Consensus 38 ~~~~~p~~~r~~~~~~~~l~ 57 (237)
|-+++.+++++..+|+++++
T Consensus 7 ~C~~~QRS~~LYV~I~LAI~ 26 (54)
T PF11125_consen 7 PCSDQQRSSTLYVLIALAIF 26 (54)
T ss_pred cchhhhhcchHHHHHHHHHH
Confidence 44556677887777776544
No 87
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.46 E-value=1.6e+02 Score=23.61 Aligned_cols=26 Identities=4% Similarity=0.027 Sum_probs=16.5
Q ss_pred EEEEEecCCCeeeEEEeceEEEEEECCEE
Q 026507 106 LSLRVRNPNRKLALVYNTLEAAVLYGEWE 134 (237)
Q Consensus 106 ~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~ 134 (237)
+++....++ +-+|=...+++.+.+..
T Consensus 76 fvvNl~~~~---~~ryLkv~i~l~~~d~~ 101 (170)
T PRK05696 76 FVFNVPGNG---RDRLVQIKVQLMVRGSD 101 (170)
T ss_pred EEEEecCCC---CceEEEEEEEEEECCHH
Confidence 444444443 35787888888887765
No 88
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.40 E-value=32 Score=22.96 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=7.8
Q ss_pred HHhheeeEEecC
Q 026507 66 ASFATWLILKPE 77 (237)
Q Consensus 66 ~~li~~lvlrP~ 77 (237)
.+.++|.++||+
T Consensus 22 fiavi~~ayr~~ 33 (60)
T COG4736 22 FIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHhccc
Confidence 445557778885
No 89
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=25.58 E-value=55 Score=30.03 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=7.6
Q ss_pred eeEEEEEEEEEEecC
Q 026507 99 TMTATWQLSLRVRNP 113 (237)
Q Consensus 99 ~l~~~~~~~l~~~NP 113 (237)
.|+-.+++|.++++-
T Consensus 83 NLtkeLN~t~~~K~~ 97 (442)
T PF06637_consen 83 NLTKELNLTTRAKDA 97 (442)
T ss_pred HHHHHhchhHHHHHH
Confidence 344455555555544
No 90
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=25.57 E-value=34 Score=25.63 Aligned_cols=8 Identities=25% Similarity=0.858 Sum_probs=4.9
Q ss_pred hheeeEEe
Q 026507 68 FATWLILK 75 (237)
Q Consensus 68 li~~lvlr 75 (237)
+|+||++-
T Consensus 11 li~~Lv~~ 18 (108)
T PF12321_consen 11 LIFWLVFV 18 (108)
T ss_pred HHHHHHHc
Confidence 66676653
No 91
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=24.83 E-value=83 Score=25.04 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=8.5
Q ss_pred HHHHHHHhheeeEEec
Q 026507 61 SIMAVASFATWLILKP 76 (237)
Q Consensus 61 ll~gv~~li~~lvlrP 76 (237)
+++...+.++|-+=+.
T Consensus 21 lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 21 LLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHhcceEEEeecc
Confidence 3333455666765553
No 92
>PF15050 SCIMP: SCIMP protein
Probab=24.20 E-value=36 Score=26.00 Aligned_cols=9 Identities=0% Similarity=0.268 Sum_probs=4.4
Q ss_pred HhheeeEEe
Q 026507 67 SFATWLILK 75 (237)
Q Consensus 67 ~li~~lvlr 75 (237)
.||+|.+.|
T Consensus 24 glIlyCvcR 32 (133)
T PF15050_consen 24 GLILYCVCR 32 (133)
T ss_pred HHHHHHHHH
Confidence 445555443
No 93
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=24.06 E-value=64 Score=24.24 Aligned_cols=17 Identities=24% Similarity=0.628 Sum_probs=9.1
Q ss_pred HHhheeeEEecCCCEEE
Q 026507 66 ASFATWLILKPEFPEFR 82 (237)
Q Consensus 66 ~~li~~lvlrP~~P~f~ 82 (237)
-+.+.|++.++..|.+.
T Consensus 18 ~~~vt~~l~~~~~p~iV 34 (111)
T PF09677_consen 18 SAWVTWLLASQPQPRIV 34 (111)
T ss_pred HHHHHHHHHhcCCCceE
Confidence 34555555665556443
No 94
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=23.66 E-value=1.8e+02 Score=22.41 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=33.9
Q ss_pred eeEEEEEEEEEEecCCCeeeEEEeceEEEEEECC--EEeeceecCCeeecCCCeEEEEE
Q 026507 99 TMTATWQLSLRVRNPNRKLALVYNTLEAAVLYGE--WELDSTLLPPFSQEKGNETRLHF 155 (237)
Q Consensus 99 ~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g--~~lg~~~vp~f~q~~~~~~~v~~ 155 (237)
....+|+++|++||.+.+-.++..+.+ +|+. ..|-.---.|...++-.+..+-+
T Consensus 20 ~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 20 HRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFVV 75 (125)
T ss_pred CceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEEE
Confidence 567889999999999887777665542 3432 23433333456666666555443
No 95
>PRK01844 hypothetical protein; Provisional
Probab=23.57 E-value=95 Score=21.52 Aligned_cols=15 Identities=27% Similarity=0.078 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhh
Q 026507 55 VVIVIISIMAVASFA 69 (237)
Q Consensus 55 ~l~~lill~gv~~li 69 (237)
++.++.+++|+++.+
T Consensus 8 ~l~I~~li~G~~~Gf 22 (72)
T PRK01844 8 LVGVVALVAGVALGF 22 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555655444
No 96
>PF04806 EspF: EspF protein repeat; InterPro: IPR006891 Enteropathogenic Escherichia coli O127:H6 attaches to the intestinal muscosa through actin pedestals that are created after it has injected the Type III secretion protein EspF (E. coli secreted protein F-like protein from prophage U) into the cells. EspF recruits the actin machinery by activating the WASP (Wiscott-Aldrich syndrome protein) family of actin nucleating factors []. Subsequent cell-death (apoptosis) is caused by EspF being targeted to the mitochondria as a consequence of its mitochondrial targeting sequence. Import into mitochondria leads to a loss of membrane potential, leakage of cytochrome c and activation of the apoptotic caspase cascade. Mutation of leucine to glutamic at position 16 of EspF (L16E) resulted in the failure of EspF import into mitochondria; mitochondrial membrane potential was not affected and cell death abolished. This suggests that the targeting of EspF to mitochondria is essential for bacterial pathogenesis and apoptosis [, ].; PDB: 2KXC_B 2K42_B.
Probab=23.53 E-value=18 Score=22.36 Aligned_cols=14 Identities=43% Similarity=0.662 Sum_probs=1.3
Q ss_pred CCCCCCCCCCCCCC
Q 026507 16 YPVTYAYAAPPPQP 29 (237)
Q Consensus 16 ~~~~~~~~~~~p~~ 29 (237)
-||++.-|.|||+.
T Consensus 11 ipp~P~rPAPpPPt 24 (47)
T PF04806_consen 11 IPPTPNRPAPPPPT 24 (47)
T ss_dssp -----SS-------
T ss_pred CCCCCCCCCCCCCC
Confidence 46666666444433
No 97
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=22.44 E-value=29 Score=32.55 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhheeeEEe
Q 026507 55 VVIVIISIMAVASFATWLILK 75 (237)
Q Consensus 55 ~l~~lill~gv~~li~~lvlr 75 (237)
++++++++++++++++|+.++
T Consensus 357 vVlgvavlivVv~viv~vc~~ 377 (439)
T PF02480_consen 357 VVLGVAVLIVVVGVIVWVCLR 377 (439)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHhheeee
Confidence 333444455556666666664
No 98
>PF14992 TMCO5: TMCO5 family
Probab=22.43 E-value=57 Score=28.68 Aligned_cols=23 Identities=30% Similarity=0.714 Sum_probs=13.1
Q ss_pred ccceehhhHHHHHHHHHHHHHHH
Q 026507 44 FWSRLLCRLFLVVIVIISIMAVA 66 (237)
Q Consensus 44 ~~~r~~~~~~~~l~~lill~gv~ 66 (237)
.|.|.+||+++.+++++-++|-+
T Consensus 213 ~wkr~lr~l~f~vL~f~~LL~y~ 235 (280)
T PF14992_consen 213 FWKRALRLLFFMVLFFTRLLGYL 235 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777655555545555433
No 99
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=22.25 E-value=48 Score=28.02 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCCcc-cCCccceehhhHHHHHHHHHHHHHHHHhh
Q 026507 35 NRSPFR-LASFWSRLLCRLFLVVIVIISIMAVASFA 69 (237)
Q Consensus 35 ~~~~~~-~~p~~~r~~~~~~~~l~~lill~gv~~li 69 (237)
.|.-+| +..+..+++=.++.++++||++++..+|+
T Consensus 1 SRf~~r~KrRK~N~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 1 SRFQQRQKRRKTNKILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred CchhHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhee
No 100
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=22.06 E-value=33 Score=21.99 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhheeeEEecCCCEEEEee
Q 026507 55 VVIVIISIMAVASFATWLILKPEFPEFRVDS 85 (237)
Q Consensus 55 ~l~~lill~gv~~li~~lvlrP~~P~f~V~~ 85 (237)
+++.+++++|++.+.++.++|-+.=+-+++.
T Consensus 5 ~iV~i~iv~~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 5 LIVSIFIVMGLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCC
Confidence 3444555556565666666665544444443
No 101
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=21.95 E-value=1.4e+02 Score=23.30 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=5.7
Q ss_pred CCCCCCCcccCC
Q 026507 32 APTNRSPFRLAS 43 (237)
Q Consensus 32 ~~~~~~~~~~~p 43 (237)
+|++.+.|.+.|
T Consensus 110 ~p~~~~~yp~~~ 121 (137)
T PF12868_consen 110 PPPQPYPYPPPP 121 (137)
T ss_pred CCCCCCCCCCCC
Confidence 444445555543
No 102
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=21.92 E-value=58 Score=25.03 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhheeeEEe
Q 026507 55 VVIVIISIMAVASFATWLILK 75 (237)
Q Consensus 55 ~l~~lill~gv~~li~~lvlr 75 (237)
++..|+++++++.++.|++=|
T Consensus 21 v~~~L~lVl~lI~~~aWLlkR 41 (124)
T PRK11486 21 VSGALIGIIALILAAAWLVKR 41 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455666667777787655
No 103
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=21.65 E-value=1.7e+02 Score=23.20 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=11.7
Q ss_pred HHHHHHHHhheeeEEe
Q 026507 60 ISIMAVASFATWLILK 75 (237)
Q Consensus 60 ill~gv~~li~~lvlr 75 (237)
+=.+||+++++|.++|
T Consensus 88 lYtiGI~~f~lY~l~K 103 (152)
T PF15361_consen 88 LYTIGIVLFILYTLFK 103 (152)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456778888888886
No 104
>smart00019 SF_P Pulmonary surfactant proteins. Pulmonary surfactant associated proteins promote alveolar stability by lowering the surface tension at the air-liquid interface in the peripheral air spaces. SP-C, a component of surfactant, is a highly hydrophobic peptide of 35 amino acid residues which is processed from a larger precursor protein. SP-C is post-translationally modified by the covalent attachment of two palmitoyl groups on two adjacent cysteines
Probab=21.40 E-value=69 Score=25.42 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=15.0
Q ss_pred CCCCCCCcccCCc-cceehhhHHHHHHHHHHHHHH
Q 026507 32 APTNRSPFRLASF-WSRLLCRLFLVVIVIISIMAV 65 (237)
Q Consensus 32 ~~~~~~~~~~~p~-~~r~~~~~~~~l~~lill~gv 65 (237)
.|++|---..+|- -+|+++..+.+++++++++|+
T Consensus 19 ~P~gr~~iPccp~~lKrLlivVvVvVlvVvVivGa 53 (191)
T smart00019 19 APRGRFGIPCCPVHLKRLLIVVVVVVLVVVVIVGA 53 (191)
T ss_pred CCCCcccCccccccceeEEEEEeeehhhHHHHHHH
Confidence 4444433334442 245555444444444444443
No 105
>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]
Probab=21.00 E-value=57 Score=32.06 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=21.9
Q ss_pred ccceehhhHHHHHHHHHHHHHHHHhheeeEEe
Q 026507 44 FWSRLLCRLFLVVIVIISIMAVASFATWLILK 75 (237)
Q Consensus 44 ~~~r~~~~~~~~l~~lill~gv~~li~~lvlr 75 (237)
+..||+||++..-.+..=++|.++++.|..++
T Consensus 458 RAlk~Lcsil~vY~l~~nIvafV~llv~i~t~ 489 (854)
T KOG1341|consen 458 RALKCLCSILVVYFLGWNIVAFVTLLVFIYTA 489 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34678888777655555577777777777664
No 106
>PF14828 Amnionless: Amnionless
Probab=20.99 E-value=58 Score=30.49 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=11.2
Q ss_pred HHHHHHHHhheeeEEecCCCEE
Q 026507 60 ISIMAVASFATWLILKPEFPEF 81 (237)
Q Consensus 60 ill~gv~~li~~lvlrP~~P~f 81 (237)
+++++++.+++|+.+.|+.|.+
T Consensus 348 Lllv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 348 LLLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred HHHHHHHHHhheEEeccccccc
Confidence 3344444455555555665554
No 107
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=20.99 E-value=43 Score=25.12 Aligned_cols=11 Identities=0% Similarity=-0.028 Sum_probs=6.4
Q ss_pred HhheeeEEecC
Q 026507 67 SFATWLILKPE 77 (237)
Q Consensus 67 ~li~~lvlrP~ 77 (237)
+++.|+.+||.
T Consensus 15 ~i~yF~~iRPQ 25 (109)
T PRK05886 15 GGFMYFASRRQ 25 (109)
T ss_pred HHHHHHHccHH
Confidence 33445667884
No 108
>PRK00523 hypothetical protein; Provisional
Probab=20.96 E-value=1.1e+02 Score=21.11 Aligned_cols=16 Identities=13% Similarity=-0.164 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 026507 54 LVVIVIISIMAVASFA 69 (237)
Q Consensus 54 ~~l~~lill~gv~~li 69 (237)
..++++.+++|+++.+
T Consensus 8 I~l~i~~li~G~~~Gf 23 (72)
T PRK00523 8 LGLGIPLLIVGGIIGY 23 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444555554443
No 109
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=20.67 E-value=1.1e+02 Score=27.66 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCC
Q 026507 10 PEPATGYPVTYAYAAPP-PQPQV 31 (237)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-p~~~~ 31 (237)
+|+=++-+|.+++.+|| |++|.
T Consensus 318 ~p~~~g~~p~pgm~~p~~p~~q~ 340 (441)
T KOG1902|consen 318 PPPWQGMPPYPGMEQPPHPYYQH 340 (441)
T ss_pred CccccCcCCcCCcccCCCCcccc
Confidence 46667777777777555 44443
No 110
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=20.61 E-value=1.1e+02 Score=31.00 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=11.9
Q ss_pred ceehhhHHHHHHHHHHHHHHHH
Q 026507 46 SRLLCRLFLVVIVIISIMAVAS 67 (237)
Q Consensus 46 ~r~~~~~~~~l~~lill~gv~~ 67 (237)
+|.++.+++.++.+++++|++.
T Consensus 138 ~R~~l~~~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 138 RRGCLGILLLLLTLIILFGVIC 159 (806)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666554
No 111
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=20.58 E-value=80 Score=30.33 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHhheeeEEe
Q 026507 50 CRLFLVVIVIISIMAVASFATWLILK 75 (237)
Q Consensus 50 ~~~~~~l~~lill~gv~~li~~lvlr 75 (237)
+-+++.+++++|+++++.|+.-++|.
T Consensus 478 K~LWIsvAliVLLAaLlSfLtg~~fq 503 (538)
T PF05781_consen 478 KVLWISVALIVLLAALLSFLTGLFFQ 503 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33444444444444444444445554
No 112
>PF15399 DUF4620: Domain of unknown function (DUF4620)
Probab=20.23 E-value=95 Score=22.36 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=8.6
Q ss_pred cCCccceehhhHH
Q 026507 41 LASFWSRLLCRLF 53 (237)
Q Consensus 41 ~~p~~~r~~~~~~ 53 (237)
+.++|-.|+||+-
T Consensus 63 pa~hwlac~ccl~ 75 (113)
T PF15399_consen 63 PAPHWLACCCCLS 75 (113)
T ss_pred ccchhhhhheeec
Confidence 4567877777753
No 113
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.02 E-value=1e+02 Score=18.82 Aligned_cols=8 Identities=0% Similarity=0.027 Sum_probs=3.9
Q ss_pred hheeeEEe
Q 026507 68 FATWLILK 75 (237)
Q Consensus 68 li~~lvlr 75 (237)
+++|+++|
T Consensus 30 ~~l~~~~r 37 (40)
T PF08693_consen 30 AFLFFWYR 37 (40)
T ss_pred HHhheEEe
Confidence 44455554
Done!