Query 026507
Match_columns 237
No_of_seqs 159 out of 867
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 15:13:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.3 1.6E-05 5.5E-10 63.7 13.4 77 77-160 43-120 (174)
2 1xo8_A AT1G01470; structural g 98.2 2.7E-06 9.2E-11 66.8 7.3 77 77-160 20-97 (151)
3 3but_A Uncharacterized protein 98.1 0.00011 3.7E-09 56.5 13.4 73 100-173 16-89 (136)
4 3hd7_B Syntaxin-1A; membrane p 64.2 3.1 0.00011 30.0 1.9 18 49-66 86-103 (109)
5 2knc_B Integrin beta-3; transm 59.3 6 0.00021 26.9 2.5 23 50-72 11-33 (79)
6 2k9j_B Integrin beta-3; transm 50.5 12 0.00041 22.3 2.5 22 50-71 10-31 (43)
7 2lk9_A Bone marrow stromal ant 35.4 23 0.00079 19.9 1.9 9 57-65 12-20 (35)
8 3s8f_C Cytochrome C oxidase po 32.7 18 0.00062 20.5 1.2 15 58-72 10-24 (34)
9 4gyx_A Type III collagen fragm 28.1 72 0.0024 16.9 3.0 18 9-26 4-21 (31)
10 1zza_A Stannin, AG8_1; helix, 27.9 22 0.00076 23.7 1.2 23 55-77 19-41 (90)
11 2l8s_A Integrin alpha-1; trans 27.7 41 0.0014 21.0 2.4 18 54-71 14-31 (54)
12 3hd7_B Syntaxin-1A; membrane p 27.0 27 0.00093 24.9 1.7 23 48-70 82-104 (109)
13 2knc_A Integrin alpha-IIB; tra 26.2 45 0.0016 20.8 2.4 18 54-71 17-34 (54)
14 3p5s_A CD38 molecule; cyclic A 25.0 15 0.00052 30.9 0.0 12 175-186 190-201 (278)
15 2ks1_B Epidermal growth factor 24.5 17 0.00059 21.7 0.2 11 65-75 26-36 (44)
16 2l2t_A Receptor tyrosine-prote 23.7 30 0.001 20.7 1.2 24 53-76 13-36 (44)
17 2k1a_A Integrin alpha-IIB; sin 23.3 59 0.002 19.2 2.4 17 55-71 16-32 (42)
18 2l0d_A Cell surface protein; s 20.6 2.4E+02 0.0081 20.1 9.6 52 101-157 18-69 (114)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.30 E-value=1.6e-05 Score=63.68 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCCEEEEeeeeeeeeccCCCCceeEEEEEEEEEEecCCCeeeEEEeceEEEEEECCEEeeceecC-CeeecCCCeEEEEE
Q 026507 77 EFPEFRVDSASIAQLNTTSANSTMTATWQLSLRVRNPNRKLALVYNTLEAAVLYGEWELDSTLLP-PFSQEKGNETRLHF 155 (237)
Q Consensus 77 ~~P~f~V~~~~v~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~ 155 (237)
+.|++++.++++.+++.. ..+|.+.|+++|||. +.+.+..++.++.-.|..++++..+ ++..++++++.+.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~------~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~V 115 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD------GVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDV 115 (174)
T ss_dssp CCCEEEEEEEEEEEECSS------SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc------eEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEE
Confidence 679999999999887653 488999999999999 8999999999999999999999887 58999999999999
Q ss_pred EEEee
Q 026507 156 QAGLL 160 (237)
Q Consensus 156 ~l~~~ 160 (237)
.+...
T Consensus 116 pv~v~ 120 (174)
T 1yyc_A 116 PVKVA 120 (174)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 98875
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.23 E-value=2.7e-06 Score=66.76 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=68.0
Q ss_pred CCCEEEEeeeeeeeeccCCCCceeEEEEEEEEEEecCCCeeeEEEeceEEEEEECCEEeeceecC-CeeecCCCeEEEEE
Q 026507 77 EFPEFRVDSASIAQLNTTSANSTMTATWQLSLRVRNPNRKLALVYNTLEAAVLYGEWELDSTLLP-PFSQEKGNETRLHF 155 (237)
Q Consensus 77 ~~P~f~V~~~~v~~~~~~~~~~~l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~ 155 (237)
+.|++++.++++.+++. ...+|.+.|+++|||. +.+.+..++.++.-.|..++++..+ ++..++++++.+.+
T Consensus 20 ~~P~v~v~~v~~~~~~~------~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~v 92 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR------DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDI 92 (151)
T ss_dssp CSCCCBCSEEEECCCTT------TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEE
T ss_pred CCCEEEEEEeEEeccCc------ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEE
Confidence 67999999999877654 3578999999999999 8999999999999999999999886 58899999999999
Q ss_pred EEEee
Q 026507 156 QAGLL 160 (237)
Q Consensus 156 ~l~~~ 160 (237)
.+...
T Consensus 93 pv~v~ 97 (151)
T 1xo8_A 93 PVVVP 97 (151)
T ss_dssp CCCEE
T ss_pred EEEEE
Confidence 88776
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.08 E-value=0.00011 Score=56.51 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=63.0
Q ss_pred eEEEEEEEEEEecCCCeeeEEEeceEEEEEECCEEeecee-cCCeeecCCCeEEEEEEEEeeeeccChHHHHHHH
Q 026507 100 MTATWQLSLRVRNPNRKLALVYNTLEAAVLYGEWELDSTL-LPPFSQEKGNETRLHFQAGLLSEYVGESVARGIE 173 (237)
Q Consensus 100 l~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~-vp~f~q~~~~~~~v~~~l~~~~~~l~~~~~~~l~ 173 (237)
-...|.+.|+++|||. +.+.++.++.++...|..+|++. ...+..++.+.+.+.+.+..+...+.+...+.+.
T Consensus 16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~ 89 (136)
T 3but_A 16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIA 89 (136)
T ss_dssp SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHH
T ss_pred cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhh
Confidence 3578999999999998 89999999999999999999987 5689999999999999999987666665555554
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=64.15 E-value=3.1 Score=30.02 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 026507 49 LCRLFLVVIVIISIMAVA 66 (237)
Q Consensus 49 ~~~~~~~l~~lill~gv~ 66 (237)
.||+++++++++++++++
T Consensus 86 ~~i~l~~~~i~~~i~~~~ 103 (109)
T 3hd7_B 86 KIMIIICCVILGIIIAST 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHH
Confidence 333333333333344433
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=59.25 E-value=6 Score=26.89 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHhheee
Q 026507 50 CRLFLVVIVIISIMAVASFATWL 72 (237)
Q Consensus 50 ~~~~~~l~~lill~gv~~li~~l 72 (237)
..+++.+++.++++|++++++|-
T Consensus 11 ~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677788888777774
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=50.53 E-value=12 Score=22.30 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhee
Q 026507 50 CRLFLVVIVIISIMAVASFATW 71 (237)
Q Consensus 50 ~~~~~~l~~lill~gv~~li~~ 71 (237)
..++..++..++++|++++++|
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777888887777
No 7
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=35.37 E-value=23 Score=19.87 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 026507 57 IVIISIMAV 65 (237)
Q Consensus 57 ~~lill~gv 65 (237)
+.+++++++
T Consensus 12 l~LLviV~L 20 (35)
T 2lk9_A 12 LVLLIIVIL 20 (35)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333333333
No 8
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=32.66 E-value=18 Score=20.45 Aligned_cols=15 Identities=20% Similarity=0.674 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhheee
Q 026507 58 VIISIMAVASFATWL 72 (237)
Q Consensus 58 ~lill~gv~~li~~l 72 (237)
..++++|+.++++|+
T Consensus 10 ~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 10 AVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 345555666666664
No 9
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=28.06 E-value=72 Score=16.87 Aligned_cols=18 Identities=28% Similarity=0.650 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 026507 9 KPEPATGYPVTYAYAAPP 26 (237)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~ 26 (237)
.||.|-+.|-.|+++-||
T Consensus 4 gppgprgqpgvmgfpgpp 21 (31)
T 4gyx_A 4 GPPGPRGQPGVMGFPGPP 21 (31)
T ss_dssp CCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCccccCCCCC
Confidence 467777788888888544
No 10
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=27.89 E-value=22 Score=23.69 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhheeeEEecC
Q 026507 55 VVIVIISIMAVASFATWLILKPE 77 (237)
Q Consensus 55 ~l~~lill~gv~~li~~lvlrP~ 77 (237)
++++.+..+|+.++..|..+|-+
T Consensus 19 viliavaalg~li~gcwcylrlq 41 (90)
T 1zza_A 19 VILIAIAALGALILGCWCYLRLQ 41 (90)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666778877643
No 11
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=27.70 E-value=41 Score=21.01 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhee
Q 026507 54 LVVIVIISIMAVASFATW 71 (237)
Q Consensus 54 ~~l~~lill~gv~~li~~ 71 (237)
..++.-+++++++++++|
T Consensus 14 ~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555666666
No 12
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=26.96 E-value=27 Score=24.89 Aligned_cols=23 Identities=4% Similarity=0.122 Sum_probs=12.7
Q ss_pred ehhhHHHHHHHHHHHHHHHHhhe
Q 026507 48 LLCRLFLVVIVIISIMAVASFAT 70 (237)
Q Consensus 48 ~~~~~~~~l~~lill~gv~~li~ 70 (237)
.-++.+++++++++++.++++++
T Consensus 82 ~rkk~~i~l~~~~i~~~i~~~~~ 104 (109)
T 3hd7_B 82 ARRKKIMIIICCVILGIIIASTI 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcceehHHHHHHHHHHHHHHh
Confidence 34666666555555555555554
No 13
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.18 E-value=45 Score=20.81 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhee
Q 026507 54 LVVIVIISIMAVASFATW 71 (237)
Q Consensus 54 ~~l~~lill~gv~~li~~ 71 (237)
..++.-+++++++++++|
T Consensus 17 ~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555666666
No 14
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=25.00 E-value=15 Score=30.94 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=6.9
Q ss_pred HHhCCeEEEEEE
Q 026507 175 ERARGEVEFGIG 186 (237)
Q Consensus 175 d~~~G~v~l~v~ 186 (237)
+.+.|.|.+-+.
T Consensus 190 ~~A~G~V~VmLN 201 (278)
T 3p5s_A 190 ESACNTVRVVLN 201 (278)
T ss_dssp HHCCSEEEEEEE
T ss_pred HhCCCeEEEEEc
Confidence 446777655443
No 15
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=24.49 E-value=17 Score=21.74 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=5.1
Q ss_pred HHHhheeeEEe
Q 026507 65 VASFATWLILK 75 (237)
Q Consensus 65 v~~li~~lvlr 75 (237)
+++++.|+.+|
T Consensus 26 ii~~~~~~~~R 36 (44)
T 2ks1_B 26 VVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 34444455454
No 16
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.73 E-value=30 Score=20.68 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhheeeEEec
Q 026507 53 FLVVIVIISIMAVASFATWLILKP 76 (237)
Q Consensus 53 ~~~l~~lill~gv~~li~~lvlrP 76 (237)
..+++.-+++++++++..|+.+|-
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeehHHHHHHHHHHHHHHHHhhh
Confidence 333333233333444555555543
No 17
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=23.28 E-value=59 Score=19.15 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhee
Q 026507 55 VVIVIISIMAVASFATW 71 (237)
Q Consensus 55 ~l~~lill~gv~~li~~ 71 (237)
.++.-+++++++++++|
T Consensus 16 s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 16 GVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444555556655
No 18
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=20.59 E-value=2.4e+02 Score=20.09 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=32.3
Q ss_pred EEEEEEEEEEecCCCeeeEEEeceEEEEEECCEEeeceecCCeeecCCCeEEEEEEE
Q 026507 101 TATWQLSLRVRNPNRKLALVYNTLEAAVLYGEWELDSTLLPPFSQEKGNETRLHFQA 157 (237)
Q Consensus 101 ~~~~~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~l 157 (237)
+-...+++.++|.-.... ....+.++-+|..++...+++ ..++.++.+.+.+
T Consensus 18 ~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~v~~--LaaG~s~tv~~~w 69 (114)
T 2l0d_A 18 NTVNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQTVTS--LESENSTNVDFHW 69 (114)
T ss_dssp TSEEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEEESC--BCBTCEEEEEEEE
T ss_pred CCeEEEEEEEEECCCCCC---CCEEEEEEECCEEEcceeccc--ccCCCEEEEEEEE
Confidence 345677889999865322 446777778888888776654 2333444455443
Done!