BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026508
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PMP|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Synthase From The Isoprenoid Biosynthetic Pathway Of
Arabidopsis Thaliana
Length = 160
Score = 313 bits (802), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 149/159 (93%), Positives = 157/159 (98%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
LPFR+GHGFDLHRLEPGYPLIIGGI +PH+RGCEAHSDGDVLLHCVVDAILGALGLPDIG
Sbjct: 2 LPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIG 61
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 198
QIFPDSDPKWKGA SSVFIKEAVRLMDEAGYEIGNLDATLILQRPK+SP+KETIR+NLS+
Sbjct: 62 QIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSK 121
Query: 199 LLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 237
LLGADP+VVNLKAKTHEKVDSLGENRSIAAHTVILLMKK
Sbjct: 122 LLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 160
>pdb|3F0D|A Chain A, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|B Chain B, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|C Chain C, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|D Chain D, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|E Chain E, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0D|F Chain F, High Resolution Crystal Structure Of
2c-Methyl-D-Erythritol 2,4- Cyclodiphosphatase Synthase
From Burkholderia Pseudomallei
pdb|3F0E|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0E|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0E|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei
pdb|3F0F|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0F|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0F|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Hydrolyzed Cdp
pdb|3F0G|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|D Chain D, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|E Chain E, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3F0G|F Chain F, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase With Cmp
pdb|3IEQ|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEQ|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEQ|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine
pdb|3IEW|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3IEW|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3IEW|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Bound Ctp And Cdp
pdb|3JVH|A Chain A, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3JVH|B Chain B, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3JVH|C Chain C, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Burkholderia Pseudomallei With Fol Fragment 8395
pdb|3K14|A Chain A, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K14|B Chain B, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K14|C Chain C, Co-Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 535, Ethyl
3-Methyl-5,6-Dihydroimidazo[2,1-B][1,
3]thiazole-2-Carboxylate
pdb|3K2X|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3K2X|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3K2X|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With 5'-Iodo- Cytosine
pdb|3KE1|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3KE1|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3KE1|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With A Fragment- Nucleoside
Fusion D000161829
pdb|3MBM|A Chain A, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3MBM|B Chain B, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3MBM|C Chain C, Crystal Structure Of 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine And Fol Fragment 717,
Imidazo[2,1-b][1,3]thiazol-6-ylmethanol
pdb|3P0Z|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P0Z|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P0Z|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol955, 4-
(1h-Imidazol)-1-Yl)phenol
pdb|3P10|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3P10|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3P10|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytidine And Fol694, 2-
(Thiophen-2-Yl)phenyl Methanol
pdb|3Q8H|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3Q8H|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3Q8H|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei In Complex With Cytidine Derivative
Ebsi01028
pdb|3QHD|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
pdb|3QHD|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
pdb|3QHD|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei Bound To Cytidine, Fol795 And Fol955
Length = 183
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 107/159 (67%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
+ FR+G G+D+H+L PG PLIIGG+ +P+ERG HSD DVLLH + DA+ GA L DIG
Sbjct: 22 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIG 81
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 198
+ F D+DP++KGA S ++E + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct: 82 RHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAA 141
Query: 199 LLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 237
L VN+KAKT+EK+ LG I A L++++
Sbjct: 142 DLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE 180
>pdb|3IKE|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKE|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKE|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Cytosine
pdb|3IKF|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
pdb|3IKF|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
pdb|3IKF|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Burkholderia
Pseudomallei With Fol Fragment 717,
Imidazo[2,,1-B][1,3]thiazol-6-Ylmethanol
Length = 166
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 107/159 (67%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
+ FR+G G+D+H+L PG PLIIGG+ +P+ERG HSD DVLLH + DA+ GA L DIG
Sbjct: 5 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIG 64
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 198
+ F D+DP++KGA S ++E + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct: 65 RHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAA 124
Query: 199 LLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 237
L VN+KAKT+EK+ LG I A L++++
Sbjct: 125 DLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE 163
>pdb|1JN1|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Synthase From Haemophilus Influenzae (Hi0671)
pdb|1JN1|B Chain B, Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Synthase From Haemophilus Influenzae (Hi0671)
pdb|1JN1|C Chain C, Structure Of 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate
Synthase From Haemophilus Influenzae (Hi0671)
Length = 158
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 102/156 (65%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+GHGFD+H PLIIGG+ VP+ G AHSDGDV LH + DAILGA L DIG++F
Sbjct: 3 RIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLF 62
Query: 142 PDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 201
PD+D ++K A S ++EA R + E GY+IGN+D T+I Q PK+ P+ + +R ++E L
Sbjct: 63 PDTDMQYKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKMRPHIDAMRAKIAEDLQ 122
Query: 202 ADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 237
D VN+KA T EK+ G IA V LL+++
Sbjct: 123 CDIEQVNVKATTTEKLGFTGRQEGIACEAVALLIRQ 158
>pdb|1VH8|A Chain A, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VH8|B Chain B, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VH8|C Chain C, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VH8|D Chain D, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VH8|E Chain E, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VH8|F Chain F, Crystal Structure Of A 2c-methyl-d-erythritol
2,4-cyclodiphosphate Synthase
pdb|1VHA|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
pdb|1VHA|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
pdb|1VHA|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
pdb|1VHA|D Chain D, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
pdb|1VHA|E Chain E, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
pdb|1VHA|F Chain F, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase
Length = 170
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 100/156 (64%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+GHGFD+H PLIIGG+ VP+ G AHSDGDV LH + DAILGA L DIG++F
Sbjct: 5 RIGHGFDVHAFGEDRPLIIGGVEVPYHTGFIAHSDGDVALHALTDAILGAAALGDIGKLF 64
Query: 142 PDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 201
PD+D ++K A S ++EA R + E GY+IGN+D T+I Q PK P+ + R ++E L
Sbjct: 65 PDTDXQYKNADSRGLLREAFRQVQEKGYKIGNVDITIIAQAPKXRPHIDAXRAKIAEDLQ 124
Query: 202 ADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 237
D VN+KA T EK+ G IA V LL+++
Sbjct: 125 CDIEQVNVKATTTEKLGFTGRQEGIACEAVALLIRQ 160
>pdb|1T0A|A Chain A, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Shewanella Oneidensis
pdb|1T0A|B Chain B, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Shewanella Oneidensis
pdb|1T0A|C Chain C, Crystal Structure Of
2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase
From Shewanella Oneidensis
Length = 159
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 100/159 (62%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
+ R+GHGFD+H+ PLI+ G+ VP+E G AHSDGDV+LH + DAILGA L DIG
Sbjct: 1 MKIRIGHGFDVHKFGEPRPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAXALGDIG 60
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 198
+ FPD+D +KGA S V ++ L G+E+GNLD T+I Q PK +P+ E R L+
Sbjct: 61 KHFPDTDAAYKGADSRVLLRHCYALAKAKGFELGNLDVTIIAQAPKXAPHIEDXRQVLAA 120
Query: 199 LLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 237
L AD +N+KA T EK+ G IA V+LL ++
Sbjct: 121 DLNADVADINVKATTTEKLGFTGRKEGIAVEAVVLLSRQ 159
>pdb|3F6M|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase Ispf From Yersinia Pestis
pdb|3FPI|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase Ispf Complexed With Cytidine
Triphosphate
Length = 165
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 2/157 (1%)
Query: 82 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQ 139
R+GHGFD+H+ E G PLIIGG+ +P+E+G AHSDGDV LH DA+LGA L DIG+
Sbjct: 5 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGK 64
Query: 140 IFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSEL 199
+FPD+DP +KGA S ++EA R + GY++GNLD T+I Q PK +P+ R NL+E
Sbjct: 65 LFPDTDPAFKGADSRGLLREAYRRILAKGYKLGNLDITIIAQAPKXAPHIPQXRVNLAED 124
Query: 200 LGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236
L +N+KA T E++ G IA V+LL+
Sbjct: 125 LQCHXDDINVKATTTEQLGFTGRGEGIACEAVVLLVN 161
>pdb|3RE3|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
pdb|3RE3|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
pdb|3RE3|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
pdb|3RE3|D Chain D, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Francisella
Tularensis
Length = 162
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 80 PFRVGHGFDLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
FR+GHG+D+H+ +IIGG+ + + G EAHSDGDVL+H + DAILGALGL DIG
Sbjct: 5 SFRIGHGYDVHKFTSAKQNIIIGGVEIAYHLGLEAHSDGDVLIHALCDAILGALGLGDIG 64
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 198
+ F D+D ++K S F+ E + +D+ Y I N+D T+I Q PK P+ E R L+
Sbjct: 65 KHFLDTDNQFKNIDSKFFLAEIKKXLDKKQYSISNIDCTIIAQAPKXLPHIEKXRACLAN 124
Query: 199 LLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236
+L + +N+KA T E++ +G IA H V LL +
Sbjct: 125 ILEIQISQINIKATTTERLGFIGREEGIATHVVCLLYR 162
>pdb|3GHZ|A Chain A, 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From
Salmonella Typhimurium
pdb|3GHZ|B Chain B, 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From
Salmonella Typhimurium
pdb|3GHZ|C Chain C, 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From
Salmonella Typhimurium
pdb|3T80|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|D Chain D, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|E Chain E, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|F Chain F, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
Length = 162
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 101/156 (64%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++
Sbjct: 4 MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKL 63
Query: 141 FPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 200
FPD+DP +KGA S ++EA R + GY +GN+D T+I Q PK+ P+ +R ++E L
Sbjct: 64 FPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDL 123
Query: 201 GADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236
G VN+KA T EK+ G IA V LLMK
Sbjct: 124 GCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMK 159
>pdb|1H47|A Chain A, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|B Chain B, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|C Chain C, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|D Chain D, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|E Chain E, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|F Chain F, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H48|A Chain A, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|B Chain B, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|C Chain C, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|D Chain D, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|E Chain E, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|F Chain F, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
Length = 161
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 102/158 (64%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
L R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG
Sbjct: 1 LEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIG 60
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 198
++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q PK+ P+ +R ++E
Sbjct: 61 KLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAE 120
Query: 199 LLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236
LG VN+KA T EK+ G IA V LL+K
Sbjct: 121 DLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 158
>pdb|3ELC|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3ELC|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3ELC|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3EOR|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3ERN|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|D Chain D, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|E Chain E, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|F Chain F, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ESJ|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3FBA|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Clycodiphosphate Synthase Complexed With Ligand
Length = 165
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 102/158 (64%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
L R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG
Sbjct: 5 LEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIG 64
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 198
++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q PK+ P+ +R ++E
Sbjct: 65 KLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAE 124
Query: 199 LLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236
LG VN+KA T EK+ G IA V LL+K
Sbjct: 125 DLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 162
>pdb|2GZL|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
Length = 159
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 102/158 (64%)
Query: 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIG 138
L R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG
Sbjct: 1 LEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIG 60
Query: 139 QIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 198
++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q PK+ P+ +R ++E
Sbjct: 61 KLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAE 120
Query: 199 LLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236
LG VN+KA T EK+ G IA V LL+K
Sbjct: 121 DLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 158
>pdb|1JY8|A Chain A, 2c-methyl-d-erythritol 2,4-cyclodiphosphate Synthase
(ispf)
pdb|1KNK|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase (Ispf) From E. Coli
Involved In Mevalonate-Independent Isoprenoid
Biosynthesis
pdb|1U3L|A Chain A, Ispf With Mg And Cdp
pdb|1U3P|A Chain A, Ispf Native
pdb|1U40|A Chain A, Ispf With 4-Diphosphocytidyl-2c-Methyl-D-Erythritol
pdb|1U43|A Chain A, Ispf With 4-Diphosphocytidyl-2c-Methyl-D-Erythritol
2-Phosphate
pdb|2AMT|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|B Chain B, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|C Chain C, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|D Chain D, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|E Chain E, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|F Chain F, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
Length = 159
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 101/156 (64%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++
Sbjct: 1 MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKL 60
Query: 141 FPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 200
FPD+DP +KGA S ++EA R + GY +GN+D T+I Q PK+ P+ +R ++E L
Sbjct: 61 FPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDL 120
Query: 201 GADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236
G VN+KA T EK+ G IA V LL+K
Sbjct: 121 GCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
>pdb|1YQN|A Chain A, E. Coli Ispf Double Mutant
Length = 161
Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 101/156 (64%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++
Sbjct: 3 MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKL 62
Query: 141 FPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 200
FPD+DP +KGA S ++EA R + GY +GN+D T+I Q PK+ P+ +R ++E L
Sbjct: 63 FPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDL 122
Query: 201 GADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236
G VN+KA T EK+ G IA V LL+K
Sbjct: 123 GCHMDDVNVKATTTEKLGFTGMGLGIACEAVALLIK 158
>pdb|1GX1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1GX1|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1GX1|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
Length = 160
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 99/155 (63%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++F
Sbjct: 3 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLF 62
Query: 142 PDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 201
PD+DP +KGA S ++EA R + GY +GN+D T+I Q PK P+ R ++E LG
Sbjct: 63 PDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKXLPHIPQXRVFIAEDLG 122
Query: 202 ADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236
VN+KA T EK+ G IA V LL+K
Sbjct: 123 CHXDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 157
>pdb|1KNJ|A Chain A, Co-Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase (Ispf) From E. Coli
Involved In Mevalonate-Independent Isoprenoid
Biosynthesis, Complexed With CmpMECDPMN2+
Length = 159
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 99/155 (63%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++F
Sbjct: 2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLF 61
Query: 142 PDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 201
PD+DP +KGA S ++EA R + GY +GN+D T+I Q PK P+ R ++E LG
Sbjct: 62 PDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKXLPHIPQXRVFIAEDLG 121
Query: 202 ADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236
VN+KA T EK+ G IA V LL+K
Sbjct: 122 CHXDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
>pdb|1W55|A Chain A, Structure Of The Bifunctional Ispdf From Campylobacter
Jejuni
pdb|1W57|A Chain A, Structure Of The Bifunctional Ispdf From Campylobacter
Jejuni Containing Zn
Length = 371
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 92/144 (63%)
Query: 84 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPD 143
G+GFD+H PL++ G+ + G +AHSDGDVL H + DAILGA GL DIG+++PD
Sbjct: 213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPD 272
Query: 144 SDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 203
+D K+K A S +K+A + E G+E+ N+D ++ Q PKL +K+ +++N++ L D
Sbjct: 273 TDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLD 332
Query: 204 PTVVNLKAKTHEKVDSLGENRSIA 227
+N+KA T EK+ +G +A
Sbjct: 333 EFRINVKATTTEKLGFIGRKEGMA 356
>pdb|1IV1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1IV1|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
Length = 152
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 85/135 (62%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+G+G D HRLE G PL + G+ +P G AHSDGD LH + DA+L A GL DIG +
Sbjct: 1 MRIGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAALHALTDALLSAYGLGDIGLL 60
Query: 141 FPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 200
FPD+DP+W+G S VF++EA+RL++ G ++ L L RPKL P+++ + +LS LL
Sbjct: 61 FPDTDPRWRGERSEVFLREALRLVEARGAKLLQASLVLTLDRPKLGPHRKALVDSLSRLL 120
Query: 201 GADPTVVNLKAKTHE 215
+ L KT E
Sbjct: 121 RLPQDRIGLTFKTSE 135
>pdb|1IV2|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV2|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Cdp)
pdb|1IV3|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV3|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Mg Atoms)
pdb|1IV4|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|D Chain D, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|E Chain E, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
pdb|1IV4|F Chain F, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase (Bound Form Substrate)
Length = 152
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 85/135 (62%)
Query: 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQI 140
R+G+G D HRLE G PL + G+ +P G AHSDGD +H + DA+L A GL DIG +
Sbjct: 1 MRIGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAAMHALTDALLSAYGLGDIGLL 60
Query: 141 FPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 200
FPD+DP+W+G S VF++EA+RL++ G ++ L L RPKL P+++ + +LS L+
Sbjct: 61 FPDTDPRWRGERSEVFLREAMRLVEARGAKLLQASLVLTLDRPKLGPHRKALVDSLSRLM 120
Query: 201 GADPTVVNLKAKTHE 215
+ L KT E
Sbjct: 121 RLPQDRIGLTFKTSE 135
>pdb|3B6N|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase Pv003920 From Plasmodium Vivax
Length = 187
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 97/181 (53%), Gaps = 26/181 (14%)
Query: 82 RVGHGFDLHRLEPGYP-------------------------LIIGGINVPHERGCEAHSD 116
R+G G+D+H++ G P L IGG+ V +HSD
Sbjct: 6 RIGQGYDIHQIRVGPPEDIVADTTADTAANTADPNKQSFKRLTIGGVPV-ETISVLSHSD 64
Query: 117 GDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDA 176
GDV+ H +VDA+LG + D+G +FPD PK+K S F++ A L+ + Y I N+D
Sbjct: 65 GDVIFHALVDALLGGMSCSDLGTLFPDGSPKYKNKNSLSFLRYARLLLYKRNYAIANVDI 124
Query: 177 TLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236
+I + PK+SP +E I N+S LG + V+LK KTHE++ +G+ ++I LL++
Sbjct: 125 IVIAEVPKISPIREEIVRNISSALGISESQVSLKGKTHEQLGPVGQKKAIECFANALLIR 184
Query: 237 K 237
K
Sbjct: 185 K 185
>pdb|2UZH|A Chain A, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
Cyclodiphosphate Synthase (Ispf)
pdb|2UZH|B Chain B, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
Cyclodiphosphate Synthase (Ispf)
pdb|2UZH|C Chain C, Mycobacterium Smegmatis 2c-Methyl-D-Erythritol-2,4-
Cyclodiphosphate Synthase (Ispf)
Length = 165
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 70/121 (57%)
Query: 82 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 141
RVG G D+H +E G P + + GC HSDGDV H + DA+L A GL D+G IF
Sbjct: 7 RVGLGTDVHPIEAGRPCRLLCLEFDDADGCAGHSDGDVAAHALCDALLSAAGLGDLGTIF 66
Query: 142 PDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 201
P+W+GA + I+ L++ AG+ IGN +I RPK+ P +E + LSEL+G
Sbjct: 67 GTDRPQWRGASGADMIRHVRGLVENAGFVIGNATVQVIGNRPKVGPRREEAQQVLSELVG 126
Query: 202 A 202
A
Sbjct: 127 A 127
>pdb|3ZTW|A Chain A, The 3-Dimensional Structure Of Apo-Mpgp, The
Mannosyl-3-Phosphoglycerate Phosphatase From Thermus
Thermophilus Hb27 In Its Apo-Form
pdb|3ZTW|B Chain B, The 3-Dimensional Structure Of Apo-Mpgp, The
Mannosyl-3-Phosphoglycerate Phosphatase From Thermus
Thermophilus Hb27 In Its Apo-Form
pdb|3ZTY|A Chain A, The 3-Dimensional Structure Of The Gadolinium Derivative
Of Mpgp, The Mannosyl-3-Phosphoglycerate Phosphatase
From Thermus Thermophilus Hb27
pdb|3ZTY|B Chain B, The 3-Dimensional Structure Of The Gadolinium Derivative
Of Mpgp, The Mannosyl-3-Phosphoglycerate Phosphatase
From Thermus Thermophilus Hb27
pdb|3ZU6|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate And Orthophosphate Reaction
Products.
pdb|3ZU6|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate And Orthophosphate Reaction
Products.
pdb|3ZUP|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Alpha-
Mannosylglycerate And Orthophosphate Reaction Products.
pdb|3ZUP|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Alpha-
Mannosylglycerate And Orthophosphate Reaction Products.
pdb|3ZW7|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate And Metaphosphate.
pdb|3ZW7|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate And Metaphosphate.
pdb|3ZWD|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate.
pdb|3ZWD|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The
Alpha-Mannosylglycerate.
pdb|3ZWK|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Metavanadate
pdb|3ZWK|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Metavanadate
pdb|3ZX4|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Alpha-
Mannosylglycerate,Orthophosphate And Magnesium
pdb|3ZX4|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, In Complex With The Alpha-
Mannosylglycerate,Orthophosphate And Magnesium
pdb|3ZX5|A Chain A, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, Covalently Bound To Vanadate And In
Complex With Alpha-Mannosylglycerate And Magnesium
pdb|3ZX5|B Chain B, The 3-Dimensional Structure Of Mpgp From Thermus
Thermophilus Hb27, Covalently Bound To Vanadate And In
Complex With Alpha-Mannosylglycerate And Magnesium
Length = 259
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 173 NLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLG 221
+LD TL+ +R +L P +E L L VV + AKT ++V++LG
Sbjct: 6 DLDGTLLDERGELGPAREA----LERLRALGVPVVPVTAKTRKEVEALG 50
>pdb|2I71|A Chain A, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
pdb|2I71|B Chain B, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
Length = 400
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 98 LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVF- 156
++I GI+V C+ ++D C++ LG+ + + P+ K+KG P F
Sbjct: 67 VVILGISVADVYNCK-YADYRSCKECIIQNSKNDLGISESYVVAPNVYQKFKGKPDHYFT 125
Query: 157 --IKEAVRLMDEAG 168
++R++++ G
Sbjct: 126 YIYYHSLRILEKEG 139
>pdb|1CIY|A Chain A, Insecticidal Toxin: Structure And Channel Formation
Length = 590
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 133 GLPDIGQIFPDSDPKWKGAPSSVFIKEAVRL----MDEAGYEIGNLDATLILQRPKLSPY 188
GL ++ QI+ +S +W+ P++ ++E +R+ M+ A L A Q P LS Y
Sbjct: 74 GLSNLYQIYAESFREWEADPTNPALREEMRIQFNDMNSALTTAIPLLAVQNYQVPLLSVY 133
Query: 189 KETIRTNLSEL 199
+ +LS L
Sbjct: 134 VQAANLHLSVL 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,949,635
Number of Sequences: 62578
Number of extensions: 226893
Number of successful extensions: 513
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 29
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)