Query 026508
Match_columns 237
No_of_seqs 181 out of 1130
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 15:14:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3re3_A 2-C-methyl-D-erythritol 100.0 1E-79 3.6E-84 519.1 17.3 160 77-236 2-162 (162)
2 1t0a_A 2C-methyl-D-erythritol 100.0 1.5E-79 5.3E-84 516.8 16.4 159 79-237 1-159 (159)
3 2pmp_A 2-C-methyl-D-erythritol 100.0 1.1E-79 3.9E-84 518.0 15.7 159 79-237 2-160 (160)
4 3f0d_A 2-C-methyl-D-erythritol 100.0 4.1E-79 1.4E-83 523.4 16.1 161 77-237 20-180 (183)
5 1gx1_A 2-C-methyl-D-erythritol 100.0 7.9E-79 2.7E-83 513.0 17.0 157 80-236 1-157 (160)
6 2uzh_A 2C-methyl-D-erythritol 100.0 2.5E-77 8.6E-82 505.7 17.3 157 77-236 2-158 (165)
7 1iv3_A 2-C-methyl-D-erythritol 100.0 3.3E-75 1.1E-79 487.6 16.7 151 81-235 1-151 (152)
8 3b6n_A 2-C-methyl-D-erythritol 100.0 7E-75 2.4E-79 498.5 13.5 157 80-237 4-185 (187)
9 1w55_A ISPD/ISPF bifunctional 100.0 5.8E-70 2E-74 500.4 15.4 157 80-236 209-365 (371)
10 3pam_A Transmembrane protein; 75.6 2.7 9.4E-05 34.5 4.2 52 156-211 101-162 (259)
11 3fwu_A Macrophage migration in 64.4 6.2 0.00021 30.9 3.8 94 113-222 31-131 (133)
12 3fwt_A Macrophage migration in 60.9 11 0.00036 29.5 4.5 93 113-221 31-130 (133)
13 3lvu_A ABC transporter, peripl 55.9 12 0.00042 30.5 4.3 53 155-211 99-163 (258)
14 3t5s_A Gilaa.00834.A, macropha 53.6 11 0.00039 29.5 3.6 89 117-221 38-132 (135)
15 3djh_A Macrophage migration in 50.3 11 0.00037 28.2 2.9 34 188-221 75-110 (114)
16 3t66_A Nickel ABC transporter 46.3 28 0.00097 31.7 5.5 51 157-211 304-365 (496)
17 4dh4_A MIF; trimer, isomerase; 45.9 13 0.00045 27.6 2.7 90 116-221 15-111 (114)
18 1oef_A Apolipoprotein E; glyco 45.9 15 0.0005 21.7 2.4 17 184-200 2-18 (26)
19 2xcz_A Possible ATLS1-like lig 44.2 53 0.0018 24.0 5.9 43 185-227 16-58 (115)
20 3zs6_A Periplasmic oligopeptid 44.1 49 0.0017 30.0 6.8 55 154-211 328-384 (506)
21 3b64_A Macrophage migration in 43.3 23 0.00077 26.1 3.7 90 113-218 10-106 (112)
22 3o9p_A Periplasmic murein pept 41.2 35 0.0012 31.1 5.3 54 155-211 341-396 (519)
23 2xcz_A Possible ATLS1-like lig 40.8 42 0.0014 24.6 4.8 87 113-215 11-103 (115)
24 1jet_A OPPA, oligo-peptide bin 39.8 24 0.00081 32.2 3.9 93 115-211 285-394 (517)
25 1ywx_A 30S ribosomal protein S 37.0 60 0.0021 25.1 5.3 29 183-211 26-54 (102)
26 3kan_A D-dopachrome tautomeras 36.9 42 0.0014 25.3 4.4 44 173-216 58-104 (117)
27 3abf_A 4-oxalocrotonate tautom 36.9 22 0.00074 23.2 2.4 35 187-221 19-55 (64)
28 3ry3_A Putative solute-binding 35.6 40 0.0014 31.1 4.8 51 157-211 333-395 (528)
29 3o6p_A Peptide ABC transporter 33.7 12 0.00042 30.0 0.9 47 157-203 80-130 (229)
30 1wyu_A Glycine dehydrogenase ( 33.4 20 0.0007 31.5 2.3 93 111-211 3-132 (438)
31 1uiz_A MIF, macrophage migrati 32.9 64 0.0022 23.6 4.7 43 185-227 16-58 (115)
32 3rqt_A Putative uncharacterize 32.7 38 0.0013 30.7 4.1 46 157-203 310-358 (486)
33 3drf_A Oligopeptide-binding pr 31.9 50 0.0017 30.9 4.8 50 157-210 381-443 (590)
34 3kan_A D-dopachrome tautomeras 31.9 1.3E+02 0.0046 22.4 6.5 40 186-225 16-55 (117)
35 1jg5_A GTP cyclohydrolase I fe 31.7 50 0.0017 25.1 3.9 50 112-174 20-69 (83)
36 1mww_A Hypothetical protein HI 31.4 1.3E+02 0.0043 22.4 6.3 83 118-215 16-105 (128)
37 2o7i_A Oligopeptide ABC transp 30.8 48 0.0016 31.0 4.5 51 157-211 344-408 (592)
38 2os5_A Acemif; macrophage migr 30.7 42 0.0014 24.9 3.4 88 113-215 11-103 (119)
39 1uiz_A MIF, macrophage migrati 30.5 37 0.0013 24.9 3.0 88 113-215 11-103 (115)
40 1hfo_A Migration inhibitory fa 30.3 38 0.0013 24.7 3.0 83 117-215 15-102 (113)
41 3ouv_A Serine/threonine protei 30.1 45 0.0015 22.6 3.2 36 146-185 11-54 (71)
42 2noo_A NIKA, nickel-binding pe 29.9 57 0.002 29.5 4.7 101 103-211 251-375 (502)
43 2os5_A Acemif; macrophage migr 29.3 1.4E+02 0.0049 21.9 6.2 42 185-226 16-57 (119)
44 3il3_A 3-oxoacyl-[acyl-carrier 29.1 37 0.0013 29.5 3.3 56 147-208 209-272 (323)
45 4af3_D Incenp, inner centromer 29.1 23 0.00079 25.6 1.6 30 125-154 33-62 (71)
46 1hfo_A Migration inhibitory fa 29.0 82 0.0028 22.8 4.7 43 185-227 15-57 (113)
47 3fwt_A Macrophage migration in 27.7 90 0.0031 24.1 4.9 43 184-226 36-78 (133)
48 2v94_A RPS24, 30S ribosomal pr 27.6 38 0.0013 26.4 2.7 30 185-214 37-66 (107)
49 1zu0_A Chitin oligosaccharide 27.6 48 0.0017 30.4 3.9 51 157-211 323-387 (529)
50 4dh4_A MIF; trimer, isomerase; 27.4 1.7E+02 0.0059 21.3 6.3 41 186-226 17-57 (114)
51 1xn9_A 30S ribosomal protein S 27.3 1.1E+02 0.0038 23.5 5.3 28 185-212 28-55 (101)
52 2wkb_A Macrophage migration in 27.0 69 0.0024 24.0 4.1 43 185-227 16-58 (125)
53 4ewp_A 3-oxoacyl-[acyl-carrier 26.7 64 0.0022 27.8 4.3 43 159-207 254-296 (350)
54 2x4k_A 4-oxalocrotonate tautom 26.7 71 0.0024 20.1 3.6 30 186-215 20-49 (63)
55 2wkb_A Macrophage migration in 26.6 49 0.0017 24.9 3.1 87 113-215 10-103 (125)
56 2grv_A LPQW; substrate-binding 26.3 80 0.0027 30.0 5.2 93 115-211 314-445 (621)
57 3gwa_A 3-oxoacyl-(acyl-carrier 26.3 53 0.0018 29.1 3.8 43 160-208 272-314 (365)
58 3djh_A Macrophage migration in 26.2 97 0.0033 22.9 4.7 40 186-225 16-55 (114)
59 2d5w_A Peptide ABC transporter 26.0 51 0.0017 30.7 3.8 87 120-211 331-440 (603)
60 2c71_A Glycoside hydrolase, fa 25.7 48 0.0016 27.2 3.2 48 124-174 138-185 (216)
61 1uqw_A Putative binding protei 25.2 83 0.0028 28.6 4.9 50 157-211 328-379 (509)
62 1dpe_A Dipeptide-binding prote 24.6 62 0.0021 29.3 3.9 45 157-203 328-378 (507)
63 1xoc_A Oligopeptide-binding pr 24.5 83 0.0028 28.6 4.8 51 157-211 332-395 (520)
64 3m8u_A Heme-binding protein A; 24.4 61 0.0021 29.6 3.9 45 157-203 330-380 (522)
65 3tpa_A Heme-binding protein A; 24.4 69 0.0024 29.3 4.3 96 103-203 274-385 (521)
66 2opa_A Probable tautomerase YW 24.1 58 0.002 20.8 2.8 29 187-215 18-46 (61)
67 1otf_A 4-oxalocrotonate tautom 23.6 59 0.002 20.7 2.7 29 187-215 18-46 (62)
68 3t5s_A Gilaa.00834.A, macropha 23.2 81 0.0028 24.5 3.9 55 170-225 23-77 (135)
69 1e2b_A Enzyme IIB-cellobiose; 23.1 77 0.0026 23.7 3.6 46 149-196 12-71 (106)
70 2g1d_A 30S ribosomal protein S 22.9 37 0.0013 26.0 1.8 27 186-212 30-56 (98)
71 1vr5_A Oligopeptide ABC transp 21.6 62 0.0021 29.8 3.4 51 157-211 338-402 (547)
72 3m20_A 4-oxalocrotonate tautom 21.1 87 0.003 20.6 3.2 28 188-215 18-45 (62)
73 1n91_A ORF, hypothetical prote 20.5 73 0.0025 24.8 3.1 32 180-211 43-74 (108)
74 3h78_A PQS biosynthetic enzyme 20.5 80 0.0027 28.0 3.8 43 160-208 260-302 (359)
75 3fwu_A Macrophage migration in 20.1 76 0.0026 24.6 3.2 40 187-226 39-78 (133)
No 1
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=100.00 E-value=1e-79 Score=519.15 Aligned_cols=160 Identities=43% Similarity=0.769 Sum_probs=144.7
Q ss_pred CCCceeEEeeeeeeecCCCCC-eEEeeeeeCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCccCCCCHHH
Q 026508 77 KSLPFRVGHGFDLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSV 155 (237)
Q Consensus 77 ~~~~~RIG~G~DvHr~~~gr~-LiLGGV~Ip~~~GL~gHSDGDVLlHAI~DALLGA~glGDIG~~FPdtDp~~Kg~dS~~ 155 (237)
..|+||||+|||+|||++||| ||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||+||..
T Consensus 2 ~~m~~RiG~G~DvH~~~~gr~~liLgGV~ip~~~Gl~gHSDgDVllHAi~DAlLGA~~lGDIG~~Fpdtdp~~kga~S~~ 81 (162)
T 3re3_A 2 NAMSFRIGHGYDVHKFTSAKQNIIIGGVEIAYHLGLEAHSDGDVLIHALCDAILGALGLGDIGKHFLDTDNQFKNIDSKF 81 (162)
T ss_dssp CCCCEEEEEEEEEEECCCCCCCEEETTEEECCCC------CCCHHHHHHHHHHHHHTTCCCHHHHC-------CCSCHHH
T ss_pred CcccEEEEceEEeeeecCCCCcEEEeeEEecCCCCCcccCHHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHH
Confidence 457899999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceEEEEEEEee
Q 026508 156 FIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLM 235 (237)
Q Consensus 156 lL~~v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIaa~Avvll~ 235 (237)
||++++++++++||+|+|+|+|||+|+|||+||+++||+|||++|++++++|||||||+|+|||+||+|||+|+|+|||+
T Consensus 82 lL~~~~~~v~~~G~~i~NvD~tii~q~PKl~p~~~~m~~~la~~L~~~~~~V~vKAtT~E~LGf~Gr~EGIaa~Av~ll~ 161 (162)
T 3re3_A 82 FLAEIKKMLDKKQYSISNIDCTIIAQAPKMLPHIEKMRACLANILEIQISQINIKATTTERLGFIGREEGIATHVVCLLY 161 (162)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEECSSSCCGGGHHHHHHHHHHHHTSCGGGEEEEEECCSSCHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEEEEEEcCCCcchhHHHHHHHHHHHHHCCCCceEEEEEecCCCcCCCcccceEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q 026508 236 K 236 (237)
Q Consensus 236 k 236 (237)
|
T Consensus 162 ~ 162 (162)
T 3re3_A 162 R 162 (162)
T ss_dssp C
T ss_pred C
Confidence 6
No 2
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=100.00 E-value=1.5e-79 Score=516.84 Aligned_cols=159 Identities=47% Similarity=0.785 Sum_probs=156.4
Q ss_pred CceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCccCCCCHHHHHH
Q 026508 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIK 158 (237)
Q Consensus 79 ~~~RIG~G~DvHr~~~gr~LiLGGV~Ip~~~GL~gHSDGDVLlHAI~DALLGA~glGDIG~~FPdtDp~~Kg~dS~~lL~ 158 (237)
|+||||+|||+|||++|||||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||+||..||+
T Consensus 1 m~~RiG~G~DvH~~~~gr~liLgGV~ip~~~Gl~gHSDgDVl~HAi~DAlLGA~~lGDIG~~Fpdtd~~~kga~S~~lL~ 80 (159)
T 1t0a_A 1 MKIRIGHGFDVHKFGEPRPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLR 80 (159)
T ss_dssp -CEEEEEEEEEEEEEESSCEEETTEEECCSCEECCSSSCCHHHHHHHHHHHHHTTCCCHHHHSCTTCGGGTTCCHHHHHH
T ss_pred CCceEEEEEEeeeecCCCCEEEeeEEecCCCCCcccCHHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceEEEEEEEeeeC
Q 026508 159 EAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 237 (237)
Q Consensus 159 ~v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIaa~Avvll~k~ 237 (237)
+++++++++||+|+|+|+|||+|+|||+||+++||+|||++|++++++|||||||+|+|||+||+|||+|+|+|||+|+
T Consensus 81 ~~~~~v~~~G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~eGIaa~Av~ll~~~ 159 (159)
T 1t0a_A 81 HCYALAKAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADVADINVKATTTEKLGFTGRKEGIAVEAVVLLSRQ 159 (159)
T ss_dssp HHHHHHHHTTEEEEEEEEEEECSSSCCGGGHHHHHHHHHHHTTCCGGGEEEEEECCTTCHHHHTTSEEEEEEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEEEEEEcCCCcChHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCcccCCCcEEEEEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999874
No 3
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-79 Score=518.04 Aligned_cols=159 Identities=94% Similarity=1.458 Sum_probs=157.2
Q ss_pred CceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCccCCCCHHHHHH
Q 026508 79 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIK 158 (237)
Q Consensus 79 ~~~RIG~G~DvHr~~~gr~LiLGGV~Ip~~~GL~gHSDGDVLlHAI~DALLGA~glGDIG~~FPdtDp~~Kg~dS~~lL~ 158 (237)
|+||||+|||+|||++|||||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||+||..||+
T Consensus 2 ~~~RiG~G~DvH~~~~gr~liLgGV~ip~~~Gl~gHSDgDVl~HAi~DAlLGA~~lGDIG~~Fpdtd~~~kga~S~~lL~ 81 (160)
T 2pmp_A 2 LPFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIK 81 (160)
T ss_dssp CSEEEEEEEEEEEEEETCCCEETTEECCCSEEECSSSCCCHHHHHHHHHHHHHHTCCCHHHHSCSSCSSCSSCCHHHHHH
T ss_pred CceeEEeEEEeeeecCCCCEEEeeEEeCCCCCCcccChHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceEEEEEEEeeeC
Q 026508 159 EAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 237 (237)
Q Consensus 159 ~v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIaa~Avvll~k~ 237 (237)
+++++++++||+|+|+|+|||+|+|||+||+++||+|||++|+++.++|||||||+|+|||+||+|||+|+|+|||+|+
T Consensus 82 ~~~~~v~~~G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~eGIaa~Av~ll~~~ 160 (160)
T 2pmp_A 82 EAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK 160 (160)
T ss_dssp HHHHHHHHHTEEEEEEEEEEECSSSCCGGGHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTSEEEEEEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEEEEEEecCCcCHHHHHHHHHHHHHHHCCCcceEEEEEecCCCCCcccCCCcEEEEEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=100.00 E-value=4.1e-79 Score=523.44 Aligned_cols=161 Identities=45% Similarity=0.800 Sum_probs=153.3
Q ss_pred CCCceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCccCCCCHHHH
Q 026508 77 KSLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVF 156 (237)
Q Consensus 77 ~~~~~RIG~G~DvHr~~~gr~LiLGGV~Ip~~~GL~gHSDGDVLlHAI~DALLGA~glGDIG~~FPdtDp~~Kg~dS~~l 156 (237)
..|+||||+|||+|||++|||||||||+||+++||.||||||||+||||||||||+++||||+||||+||+|||+||..|
T Consensus 20 ~~m~~RiG~G~DvH~~~~gr~LiLGGV~ip~~~GL~gHSDgDVllHAi~DALLGA~glGDIG~~FPdtDp~~kgadS~~l 99 (183)
T 3f0d_A 20 GSMDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRAL 99 (183)
T ss_dssp --CCEEEEEEEEEEEEEETSCEEETTEEECCSEEECSSSCCCHHHHHHHHHHHHHTTCCCHHHHSCC----CTTCCHHHH
T ss_pred CCcceeEEeeEEeeecCCCCCEEEccEeccCCCCccccCHHHHHHHHHHHHHHHhhcCCCCcccCCCCChhhCCCCHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceEEEEEEEeee
Q 026508 157 IKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIaa~Avvll~k 236 (237)
|++++++++++||+|+|+|+|||+|+|||+||+++||+|||++|++++++|||||||+|+|||+||+|||+|+|+|||+|
T Consensus 100 L~~~~~lv~~~G~~I~NvD~tIiaq~PKl~p~~~~mr~~la~~L~i~~~~VnVKATT~E~LGf~Gr~EGIaa~Av~ll~~ 179 (183)
T 3f0d_A 100 LRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVR 179 (183)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEECSSSCCGGGHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEEEEEcCCCcchhHHHHHHHHHHHHHCCCcceEEEEEecCCCCccCcCcceEEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 026508 237 K 237 (237)
Q Consensus 237 ~ 237 (237)
.
T Consensus 180 ~ 180 (183)
T 3f0d_A 180 E 180 (183)
T ss_dssp C
T ss_pred c
Confidence 3
No 5
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=100.00 E-value=7.9e-79 Score=512.96 Aligned_cols=157 Identities=47% Similarity=0.785 Sum_probs=155.5
Q ss_pred ceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCccCCCCHHHHHHH
Q 026508 80 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKE 159 (237)
Q Consensus 80 ~~RIG~G~DvHr~~~gr~LiLGGV~Ip~~~GL~gHSDGDVLlHAI~DALLGA~glGDIG~~FPdtDp~~Kg~dS~~lL~~ 159 (237)
+||||+|||+|||++|||||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||+||..||++
T Consensus 1 ~~RiG~G~DvH~~~~gr~liLgGV~ip~~~Gl~gHSDgDVl~HAi~DAlLGA~~lGDIG~~Fpdtd~~~kga~S~~lL~~ 80 (160)
T 1gx1_A 1 EMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLRE 80 (160)
T ss_dssp CEEEEEEEEEEEEESSSCEEETTEEECCSSEECSSSCCCHHHHHHHHHHHHHTTCCCHHHHSCTTCGGGTTCCHHHHHHH
T ss_pred CccEEEEEEeeeecCCCcEEEeeEeccCCCCCcccCHHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceEEEEEEEeee
Q 026508 160 AVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236 (237)
Q Consensus 160 v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIaa~Avvll~k 236 (237)
++++++++||+|+|+|+|||+|+|||+||+++||+|||++|++++++|||||||+|+|||+||+|||+|+|+|||++
T Consensus 81 ~~~~v~~~G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~eGIaa~Av~ll~~ 157 (160)
T 1gx1_A 81 AWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 157 (160)
T ss_dssp HHHHHHHTTCEEEEEEEEEECSSSCCGGGHHHHHHHHHHHTTCCGGGEEEEEECCTTCHHHHTTSEEEEEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEEEEEEcCCCcchHHHHHHHHHHHHHhCCCCceEEEEEccCCCCCcccCCCcEEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 6
>2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF, lyase, mycobacteria, complex with CDP; HET: CDP IPE; 2.2A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.5e-77 Score=505.75 Aligned_cols=157 Identities=37% Similarity=0.632 Sum_probs=150.6
Q ss_pred CCCceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCccCCCCHHHH
Q 026508 77 KSLPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVF 156 (237)
Q Consensus 77 ~~~~~RIG~G~DvHr~~~gr~LiLGGV~Ip~~~GL~gHSDGDVLlHAI~DALLGA~glGDIG~~FPdtDp~~Kg~dS~~l 156 (237)
.+|.||||+|||+|||++|||||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||+||..|
T Consensus 2 ~~~~~RiG~G~DvH~~~~gr~liLgGV~ip~~~Gl~gHSDgDVl~HAi~DAlLGA~~lGDIG~~Fpdtdp~~kga~S~~l 81 (165)
T 2uzh_A 2 HMMLPRVGLGTDVHPIEAGRPCRLLCLEFDDADGCAGHSDGDVAAHALCDALLSAAGLGDLGTIFGTDRPQWRGASGADM 81 (165)
T ss_dssp ---CCEEEEEEEEEEBCTTSCEEETTEEETTSCCBC--CCCCHHHHHHHHHHHHHTTCCCHHHHHTTTCGGGTTCCHHHH
T ss_pred CCCcEEEEEEEEeeeecCCCCEEEeeEEccCCCCCcccCHHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHHH
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceEEEEEEEeee
Q 026508 157 IKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIaa~Avvll~k 236 (237)
|++++++++++||+|+|+|+|||+|+|||+||+++||+|||++|+++ |||||||+|+|||+||+|||+|+|+|||++
T Consensus 82 L~~~~~~v~~~G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L~~~---V~vKAtT~E~LGf~Gr~EGIaa~Av~ll~~ 158 (165)
T 2uzh_A 82 IRHVRGLVENAGFVIGNATVQVIGNRPKVGPRREEAQQVLSELVGAP---VSVSATTTDGLGLTGRGEGLAAIATALVAA 158 (165)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEESSSSCCGGGHHHHHHHHHHHHTSC---EEEEEECCTTCHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEEEEEcCCCcchHHHHHHHHHHHHHhCCC---EEEEEecCCCCCcccCCCceEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999996 999999999999999999999999999987
No 7
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=100.00 E-value=3.3e-75 Score=487.55 Aligned_cols=151 Identities=42% Similarity=0.729 Sum_probs=148.9
Q ss_pred eeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCccCCCCHHHHHHHH
Q 026508 81 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 160 (237)
Q Consensus 81 ~RIG~G~DvHr~~~gr~LiLGGV~Ip~~~GL~gHSDGDVLlHAI~DALLGA~glGDIG~~FPdtDp~~Kg~dS~~lL~~v 160 (237)
||||+|||+|||++|||||||||+||+++||.|||||||++||||||||||+++||||+||||+||+|||+||..||+++
T Consensus 1 ~RiG~G~DvH~~~~gr~liLgGV~ip~~~Gl~gHSDgDVllHAi~DAlLGA~~lGDIG~~Fpdtdp~~kga~S~~lL~~~ 80 (152)
T 1iv3_A 1 MRIGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAAMHALTDALLSAYGLGDIGLLFPDTDPRWRGERSEVFLREA 80 (152)
T ss_dssp -CEEEEEEEEEEEETSCEEETTEEECCSEEECSSSCCCHHHHHHHHHHHHTTTCCCHHHHSCTTSTTTTTCCHHHHHHHH
T ss_pred CceEEEEEeeeecCCCCEEEeeEEecCCCCCcccChHHHHHHHHHHHHHHhccCCCCcccCCCCChhhCCCCHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceEEEEEEEee
Q 026508 161 VRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLM 235 (237)
Q Consensus 161 ~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIaa~Avvll~ 235 (237)
+++++++||+|+|+|+|||+|+|||+||+++||+|||++|++++++|||||||+|+|| +|||+|+|+|||+
T Consensus 81 ~~~~~~~G~~i~NvD~tii~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LG----~eGIaa~Av~ll~ 151 (152)
T 1iv3_A 81 MRLVEARGAKLLQASLVLTLDRPKLGPHRKALVDSLSRLMRLPQDRIGLTFKTSEGLA----PSHVQARAVVLLD 151 (152)
T ss_dssp HHHHHHTTCCEEEEEEEEECSSSCCGGGHHHHHHHHHHHHTCCGGGEEEEEECCTTSS----TTEEEEEEEEEEC
T ss_pred HHHHHHcCCEEEEEEEEEEecCCcCHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCC----cCceEEEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999 8999999999985
No 8
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=100.00 E-value=7e-75 Score=498.53 Aligned_cols=157 Identities=39% Similarity=0.720 Sum_probs=138.5
Q ss_pred ceeEEeeeeeeecCCC-------------------------CCeEEeeeeeCCCCCCCCCChhHHHHHHHHHHHHHhcCC
Q 026508 80 PFRVGHGFDLHRLEPG-------------------------YPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGL 134 (237)
Q Consensus 80 ~~RIG~G~DvHr~~~g-------------------------r~LiLGGV~Ip~~~GL~gHSDGDVLlHAI~DALLGA~gl 134 (237)
+||||+|||+|||+++ |+||||||+|| ++||.|||||||++||||||||||+++
T Consensus 4 ~~RiG~G~DvH~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~r~LiLGGV~ip-~~Gl~gHSDgDVl~HAi~DAlLGA~~l 82 (187)
T 3b6n_A 4 GVRIGQGYDIHQIRVGPPEDIVADTTADTAANTADPNKQSFKRLTIGGVPVE-TISVLSHSDGDVIFHALVDALLGGMSC 82 (187)
T ss_dssp CEEEEEEEEEEEEESSCCC------------------CCEEEEEEETTEEEE-EEEEEESSCCCHHHHHHHHHHHHHTTC
T ss_pred CceeEeeEeeeccccCCccccccccccccccccccccccCCCcEEEeeEecC-CCCCCccCHHHHHHHHHHHHHHHhccC
Confidence 5899999999999755 89999999999 789999999999999999999999999
Q ss_pred CCCcccCCCCCCccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCceeEEeEcC
Q 026508 135 PDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTH 214 (237)
Q Consensus 135 GDIG~~FPdtDp~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKAtT~ 214 (237)
||||+||||+||+|||+||..||++++++++++||+|+|+|+|||+|+|||+||+++||+|||++|++++++|||||||+
T Consensus 83 GDIG~~FPdtdp~~kga~S~~lL~~a~~l~~~~Gy~I~NvD~tiiaq~PKi~p~~~~m~~nia~~L~i~~~~VnVKAtT~ 162 (187)
T 3b6n_A 83 SDLGTLFPDGSPKYKNKNSLSFLRYARLLLYKRNYAIANVDIIVIAEVPKISPIREEIVRNISSALGISESQVSLKGKTH 162 (187)
T ss_dssp C---------------CCTHHHHHHHHHHHHHTTEEEEEEEEEEECSSSCSHHHHHHHHHHHHHHHTCCGGGEEEEEECC
T ss_pred CCCcccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEeCCCcchHHHHHHHHHHHHHhCCCcceEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccceEEEEEEEeeeC
Q 026508 215 EKVDSLGENRSIAAHTVILLMKK 237 (237)
Q Consensus 215 E~LG~~Gr~egIaa~Avvll~k~ 237 (237)
|+|||+||+|||+|+|+|||+|+
T Consensus 163 E~LGf~Gr~egIaa~Av~ll~~~ 185 (187)
T 3b6n_A 163 EQLGPVGQKKAIECFANALLIRK 185 (187)
T ss_dssp TTCHHHHTTSEEEEEEEEEEEEC
T ss_pred CCCCcCcCCCcEEEEEEEEEEec
Confidence 99999999999999999999874
No 9
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=100.00 E-value=5.8e-70 Score=500.44 Aligned_cols=157 Identities=38% Similarity=0.656 Sum_probs=155.4
Q ss_pred ceeEEeeeeeeecCCCCCeEEeeeeeCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCccCCCCHHHHHHH
Q 026508 80 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKE 159 (237)
Q Consensus 80 ~~RIG~G~DvHr~~~gr~LiLGGV~Ip~~~GL~gHSDGDVLlHAI~DALLGA~glGDIG~~FPdtDp~~Kg~dS~~lL~~ 159 (237)
+||||+|||+|+|++||+||||||+||+++||.|||||||++||||||||||+|+||||+||||+||+|||+||..||++
T Consensus 209 ~~r~g~g~d~h~~~~~~~~~l~g~~i~~~~g~~~hsd~dv~~ha~~da~lga~~~gdig~~f~~~~~~~~~~~s~~~l~~ 288 (371)
T 1w55_A 209 EIFTGNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQ 288 (371)
T ss_dssp CEEEEEEEEEEEEEEESCEEETTEEEESSEEECSSTTCCHHHHHHHHHHHHHTTCCCHHHHSCCTTSTTTTCCHHHHHHH
T ss_pred ceEEecCceEeeccCCCceeecCEEecCCCCCccCChhHHHHHHHHHHHHHhhcCCCccccCCCCChhhCCCCHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceEEEEEEEeee
Q 026508 160 AVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIAAHTVILLMK 236 (237)
Q Consensus 160 v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIaa~Avvll~k 236 (237)
++++++++||+|+|+|+|||+|+|||+||+++||+|||++|+++.++|||||||+|+|||+||+|||+|+|+|||++
T Consensus 289 ~~~~~~~~g~~~~n~d~~~~~~~pk~~~~~~~~~~~~~~~~~~~~~~v~~ka~t~e~lg~~g~~~~i~~~a~~~~~~ 365 (371)
T 1w55_A 289 AYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATTTEKLGFIGRKEGMAVLSSVNLKY 365 (371)
T ss_dssp HHHHHHHTTEEEEEEEEEEECSSSCCGGGHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEeEEEEeCCCCchhHHHHHHHHHHHHhCCCcceEEEEEecCCCCCcCCCCCcEEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975
No 10
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=75.57 E-value=2.7 Score=34.53 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCeEEE----------EEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 156 FIKEAVRLMDEAGYEIGN----------LDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 156 lL~~v~~ll~~~G~~I~N----------iD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
=++++.++|++.||...+ +.+++....|-....-+.|++.|++ +||+ |+|+.
T Consensus 101 d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~---v~i~~ 162 (259)
T 3pam_A 101 NAQKAWKLLQEAGFTKKNNRLIAPNGLPFQFEIMTQSLEEEKVALAFQSNLSR-LGIH---AEIRT 162 (259)
T ss_dssp HHHHHHHHHHHTTCEEETTEEECTTSCBCEEEEEESSHHHHHHHHHHHHHHHT-TTCE---EEEEE
T ss_pred CHHHHHHHHHHcCCccCCCcEECCCCcEEEEEEEeCCchHHHHHHHHHHHHHH-cCCE---EEEEe
Confidence 378999999999998632 5677766543333345566777766 5765 44443
No 11
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=64.42 E-value=6.2 Score=30.94 Aligned_cols=94 Identities=9% Similarity=0.056 Sum_probs=57.5
Q ss_pred CCChh--HHHHHHHHHHHHHhcCCCC--CcccC-CCCCCccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCCCCC--
Q 026508 113 AHSDG--DVLLHCVVDAILGALGLPD--IGQIF-PDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKL-- 185 (237)
Q Consensus 113 gHSDG--DVLlHAI~DALLGA~glGD--IG~~F-PdtDp~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~PKl-- 185 (237)
+.+|. +.|+-.++.++--++|.+. +--.+ |+..=-|.|-+ .- ..-+.++.+.....=
T Consensus 31 ~~s~~~~~~l~~~ls~~la~~lgKPe~~vmV~~~~~~~m~fgGs~--------------dP--~a~v~i~sig~~~~e~n 94 (133)
T 3fwu_A 31 PLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGST--------------DP--VACVRVEALGGYGPSEP 94 (133)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBC--------------SS--CEEEEEECTTCCCTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCccEEEEEEECCceEEECCcC--------------CC--EEEEEEEEcCCCCHHHH
Confidence 34454 3467777777777777764 11112 22222222221 11 233456666544321
Q ss_pred chhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCccc
Q 026508 186 SPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGE 222 (237)
Q Consensus 186 ~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr 222 (237)
..|..+|.+.|.+.||+++++|-|+-.-.|..|+-|+
T Consensus 95 ~~~s~~i~~~l~~~LgI~~~riyI~f~d~~~wG~nG~ 131 (133)
T 3fwu_A 95 EKVTSIVTAAITKECGIVADRIFVLYFSPLHCGWNGT 131 (133)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEEECCSCCEETTE
T ss_pred HHHHHHHHHHHHHHhCcChhhEEEEEEEHHHEeeCcE
Confidence 2577888999999999999999999988887777654
No 12
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=60.85 E-value=11 Score=29.50 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=59.2
Q ss_pred CCCh--hHHHHHHHHHHHHHhcCCCC--CcccC-CCCCCccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCCCCC--
Q 026508 113 AHSD--GDVLLHCVVDAILGALGLPD--IGQIF-PDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKL-- 185 (237)
Q Consensus 113 gHSD--GDVLlHAI~DALLGA~glGD--IG~~F-PdtDp~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~PKl-- 185 (237)
+.+| -+.|+-.++.++.-+.|.+. +--.+ |+..=-|.|-+ . -..-++++++.....=
T Consensus 31 ~~s~~~~~~l~~~ls~~la~~lgKPe~~v~V~~~~~~~m~fgGs~--------------d--P~a~v~v~sig~~~~e~n 94 (133)
T 3fwt_A 31 SLDDQKRANLSAAYGMICREELGKPEDFVMTAFSDKTPISFQGST--------------A--PAAYVRVESWGEYAPSKP 94 (133)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEEEECSCCCCBTTBC--------------S--SCEEEEEEEEECCCTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcCEEEEEEECCceEEECCCC--------------C--CeEEEEEEECCCCCHHHH
Confidence 3553 47788888888888888876 21122 22222233321 1 2335666776644322
Q ss_pred chhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcc
Q 026508 186 SPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLG 221 (237)
Q Consensus 186 ~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~G 221 (237)
..|..+|.+.|.+.||+++++|-|+..-.+..|+-|
T Consensus 95 ~~~s~~i~~~l~~~LgI~~~rvyI~f~d~~~wg~nG 130 (133)
T 3fwt_A 95 KMMTPRIAAAITKECGIPAERIYVFYYSTKHCGWNG 130 (133)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEEEEESCCEETT
T ss_pred HHHHHHHHHHHHHHhCcChhhEEEEEEEhhhEeECC
Confidence 257788999999999999999999988776444433
No 13
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=55.86 E-value=12 Score=30.54 Aligned_cols=53 Identities=19% Similarity=0.416 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCeEE----------EEEEEEEcC--CCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 155 VFIKEAVRLMDEAGYEIG----------NLDATLILQ--RPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 155 ~lL~~v~~ll~~~G~~I~----------NiD~TIi~q--~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
.=++++.++|++.||... .+.++|... .|......+.|++.|++ +||+ |+|+.
T Consensus 99 ~d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~-iGi~---v~i~~ 163 (258)
T 3lvu_A 99 TNLRRAAQFLEQAGFRIEQGQLLGPDGAPLALRFLLRQGDSDMQTVLEIYTRALER-LGIA---AQIEK 163 (258)
T ss_dssp HHHHHHHHHHHHTTCEEETTEEECTTSSBCCCEEEEETTCHHHHHHHHHHHHHHHT-TTCC---CEEEE
T ss_pred CCHHHHHHHHHHcCCEeCCCcEECCCCcEEEEEEEecCCChhHHHHHHHHHHHHHH-cCCe---eEEEe
Confidence 347899999999999852 145555443 34445566777888877 7887 55554
No 14
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=53.59 E-value=11 Score=29.47 Aligned_cols=89 Identities=12% Similarity=0.028 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHhcCCCC--CcccCCCCCCccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCCCC--CchhHHHH
Q 026508 117 GDVLLHCVVDAILGALGLPD--IGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPK--LSPYKETI 192 (237)
Q Consensus 117 GDVLlHAI~DALLGA~glGD--IG~~FPdtDp~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~PK--l~p~~~~m 192 (237)
-+-|+-.++.++--+.|.+. +--.+-+..=-|.|- + .- ..-+.++.+..+.. =..|..+|
T Consensus 38 ~~~l~~~ls~~la~~lgKPe~~vmV~v~~~~m~fgGs-~-------------dp--~a~v~i~sig~~t~e~n~~~s~~i 101 (135)
T 3t5s_A 38 ADAFCLDMGQVLAKETGKPVSYCMAGVRKADMSFGTS-T-------------DL--CCFVDFYCIGVISQAKNPSISAAI 101 (135)
T ss_dssp HHHHHHHHHHHHHHHHCSCGGGCEEEEEECCCCBTTB-C-------------CS--CEEEEEECCC-----CCHHHHHHH
T ss_pred cchhHHHHHHHHHHhhCCchHHHHhhhhhhhcccCcc-c-------------ce--EEEEEEEEEEEEeccCCchHHHHH
Confidence 47788888888888888765 111122112222221 1 11 22355555543322 24588999
Q ss_pred HHHHHHHhCCCCCceeEEeEcC--CCCCCcc
Q 026508 193 RTNLSELLGADPTVVNLKAKTH--EKVDSLG 221 (237)
Q Consensus 193 r~~La~lL~i~~~~VnIKAtT~--E~LG~~G 221 (237)
.+.|.+.||+++++|-|+..-. |..|+-|
T Consensus 102 ~~~l~~~Lgi~~~riyI~f~d~~~~~wg~nG 132 (135)
T 3t5s_A 102 TGCLTQHFKVKPERVYISFNEAKGHNWGFNG 132 (135)
T ss_dssp HHHHHHHHCCCGGGEEEEEEC----------
T ss_pred HHHHHHhcccCccEEEEEeccccCcccccCC
Confidence 9999999999999999999877 6566554
No 15
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=50.30 E-value=11 Score=28.25 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhCCCCCceeEEeEcC--CCCCCcc
Q 026508 188 YKETIRTNLSELLGADPTVVNLKAKTH--EKVDSLG 221 (237)
Q Consensus 188 ~~~~mr~~La~lL~i~~~~VnIKAtT~--E~LG~~G 221 (237)
|-.+|.+.|.+.||+++++|-|+-.-. +..|+-|
T Consensus 75 ~s~~i~~~l~~~Lgi~~~riyI~f~d~~~~~~g~~G 110 (114)
T 3djh_A 75 YSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNN 110 (114)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEEETT
T ss_pred HHHHHHHHHHHHhCcCcceEEEEEEECCHHHeeECC
Confidence 778889999999999999999998766 4444433
No 16
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=46.32 E-value=28 Score=31.71 Aligned_cols=51 Identities=24% Similarity=0.507 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCeEE---------EEEEEEEc--CCCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 157 IKEAVRLMDEAGYEIG---------NLDATLIL--QRPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~---------NiD~TIi~--q~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
++++.++|++.||.-. .+.++|.. ..|.....-+.|++.|++ +||+ |+|+.
T Consensus 304 ~~kAk~LL~eaG~~~~dG~~~~dG~~l~l~l~~~~~~~~~~~~a~~i~~~l~~-iGI~---v~i~~ 365 (496)
T 3t66_A 304 TDIAIQYLEEAGYTLENGQMQKDGEPLHFTVLTYGSRAELPLIAQVFQSNAKQ-IGIE---VEIRQ 365 (496)
T ss_dssp HHHHHHHHHHHTCEECC-CEEETTEECEEEEEECSSSTTHHHHHHHHHHHHHH-TTCE---EEEEE
T ss_pred HHHHHHHHHHcCCCCCCCcCccCCcEEEEEEEecCCCccHHHHHHHHHHHHHh-cCCE---EEEEE
Confidence 6789999999999853 34555544 355555566778888876 6875 55544
No 17
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=45.93 E-value=13 Score=27.62 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCC--CcccCCCCCC-ccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCCCCC--chhHH
Q 026508 116 DGDVLLHCVVDAILGALGLPD--IGQIFPDSDP-KWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKL--SPYKE 190 (237)
Q Consensus 116 DGDVLlHAI~DALLGA~glGD--IG~~FPdtDp-~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~PKl--~p~~~ 190 (237)
+-+-++-.++.++--++|.+. +--.|-+..+ -|.|-+ .-. .-+.+.++.....= ..+..
T Consensus 15 ~~~~l~~~ls~~~a~~lgKPe~~v~V~~~~~~~m~fgGs~--------------~p~--a~v~i~~ig~~~~e~~~~l~~ 78 (114)
T 4dh4_A 15 QQDALLKDAEKAVADALGKPLSYVMVGYSQTGQMRFGGSS--------------DPC--AFIRVASIGGITSSTNCKIAA 78 (114)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEECSCCCBTTBC--------------SCC--EEEEEEEESCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCChHHEEEEEeCCceEEECCcC--------------CCe--EEEEEEEEcCCCHHHHHHHHH
Confidence 456677777777777777764 2222222222 222221 122 23455666643321 24778
Q ss_pred HHHHHHHHHhCCCCCceeEEeEcC--CCCCCcc
Q 026508 191 TIRTNLSELLGADPTVVNLKAKTH--EKVDSLG 221 (237)
Q Consensus 191 ~mr~~La~lL~i~~~~VnIKAtT~--E~LG~~G 221 (237)
++.+.|.+.||+++++|-|+-.-. +..|+-|
T Consensus 79 ~i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~~G 111 (114)
T 4dh4_A 79 ALSAACERHLGVPKNRIYTTFTNKSPSEWAMGD 111 (114)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEEEECGGGCEETT
T ss_pred HHHHHHHHHhCcCcccEEEEEEeCCHHHeEECC
Confidence 888999999999999999998765 4444433
No 18
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=45.92 E-value=15 Score=21.66 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.8
Q ss_pred CCchhHHHHHHHHHHHh
Q 026508 184 KLSPYKETIRTNLSELL 200 (237)
Q Consensus 184 Kl~p~~~~mr~~La~lL 200 (237)
+|.||-++||+.+..+.
T Consensus 2 ~~~P~~e~ik~q~~~i~ 18 (26)
T 1oef_A 2 WFEPLVEDMQRQWAGLV 18 (26)
T ss_dssp CCTTHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 68999999999888765
No 19
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=44.19 E-value=53 Score=24.04 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=36.9
Q ss_pred CchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceE
Q 026508 185 LSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIA 227 (237)
Q Consensus 185 l~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIa 227 (237)
.....+++-+.+++.||.|.+.+-|--...+.+.|-|+.+-.+
T Consensus 16 ~~~l~~~~~~~l~~~lgkp~~~~~v~~~~~~~~~~~g~~~~~~ 58 (115)
T 2xcz_A 16 ANSLLQELSSKLAELLGKPEKYVMTSLQCGVPMTFSGNTEPTC 58 (115)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCE
T ss_pred HHHHHHHHHHHHHHHHCCChHHEEEEEECCCceEECCCCCcEE
Confidence 4457888999999999999999999999999999988876543
No 20
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein, ABC transport system; HET: GOL; 2.10A {Burkholderia pseudomallei}
Probab=44.14 E-value=49 Score=30.04 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCCeEE-EEEEEEEc-CCCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 154 SVFIKEAVRLMDEAGYEIG-NLDATLIL-QRPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 154 ~~lL~~v~~ll~~~G~~I~-NiD~TIi~-q~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
..=++++.++|++.||.-+ .+.+++.. ..+.....-+.|++.|++.+||+ |+|+.
T Consensus 328 ~~d~~kAk~LL~eAG~~~G~~~~l~l~~~~~~~~~~~a~~i~~~l~~~iGI~---v~i~~ 384 (506)
T 3zs6_A 328 ARRVDYAKNLLKQAGHGDANPLTFTLTYNTNDLHKKVALFAASEWRTKLGVT---AKLEN 384 (506)
T ss_dssp HHHHHHHHHHHHHTTCSTTSCCEEEEEEESCHHHHHHHHHHHHHHHHHHCCE---EEEEE
T ss_pred cCCHHHHHHHHHHcCCCCCCCceEEEEEcCCchHHHHHHHHHHHHHHhcCCE---EEEEe
Confidence 4457999999999999722 13444432 22222234456777777757876 55553
No 21
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=43.32 E-value=23 Score=26.07 Aligned_cols=90 Identities=10% Similarity=0.017 Sum_probs=57.1
Q ss_pred CCCh-hHHHHHHHHHHHH-HhcCCCCC--cccC-CCCCCccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCCCC--C
Q 026508 113 AHSD-GDVLLHCVVDAIL-GALGLPDI--GQIF-PDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPK--L 185 (237)
Q Consensus 113 gHSD-GDVLlHAI~DALL-GA~glGDI--G~~F-PdtDp~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~PK--l 185 (237)
+.|| -+-|+-++.+|+. -+.+.+.= --.+ |+..=-|.| +...+-+.+| +++..+.+ -
T Consensus 10 ~~~~~~~~l~~~~~~~l~~~~~gkPe~~~~v~~~~~~~~~~~G--------------~~~~~~~i~i--~~~~g~~~eqk 73 (112)
T 3b64_A 10 PLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFG--------------STDPVACVRV--EALGGYGPSEP 73 (112)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTT--------------BCSSCEEEEE--ECTTCCCTTHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhCCCHHHEEEEEeCCceEEECC--------------CCCCEEEEEE--EEcCCCCHHHH
Confidence 3456 5778888999988 88888762 1112 222222332 1134444444 44543322 2
Q ss_pred chhHHHHHHHHHHHhCCCCCceeEEeEcCCCCC
Q 026508 186 SPYKETIRTNLSELLGADPTVVNLKAKTHEKVD 218 (237)
Q Consensus 186 ~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG 218 (237)
..+..++.+.|.+.||+++++|-|.-.-.+..|
T Consensus 74 ~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~wg 106 (112)
T 3b64_A 74 EKVTSIVTAAITKECGIVADRIFVLYFSPLHCG 106 (112)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEEECCSCCE
T ss_pred HHHHHHHHHHHHHHhCcCcceEEEEEEEhhHee
Confidence 358889999999999999999999998776333
No 22
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding proteins, murein tripeptide, periplasmi protein; HET: MHI; 2.07A {Escherichia coli} SCOP: c.94.1.0
Probab=41.19 E-value=35 Score=31.14 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCeEE-EEEEEEEc-CCCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 155 VFIKEAVRLMDEAGYEIG-NLDATLIL-QRPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 155 ~lL~~v~~ll~~~G~~I~-NiD~TIi~-q~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
.=++++.++|++.||.-+ .+.++|.. ..+.-...-+.|++.|++.+||+ |+|+.
T Consensus 341 ~d~~kAk~LL~eaG~~~G~~l~l~l~~~~~~~~~~~a~~i~~~l~~~iGI~---v~i~~ 396 (519)
T 3o9p_A 341 ELNAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQKIAIAVASMWKKNLGVD---VKLQN 396 (519)
T ss_dssp HHHHHHHHHHHHHTCBTTBCCEEEEEEESCHHHHHHHHHHHHHHHHHHCCE---EEEEE
T ss_pred cCHHHHHHHHHHcCCCCCCCceEEEEecCCchhHHHHHHHHHHHHHhcCcE---EEEEe
Confidence 347899999999999722 23444433 22222234556777777757876 55554
No 23
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=40.76 E-value=42 Score=24.62 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=57.1
Q ss_pred CCCh-hHHHHHHHHHHHHHhcCCCCC--cccCCCCCC-ccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCCCCC--c
Q 026508 113 AHSD-GDVLLHCVVDAILGALGLPDI--GQIFPDSDP-KWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKL--S 186 (237)
Q Consensus 113 gHSD-GDVLlHAI~DALLGA~glGDI--G~~FPdtDp-~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~PKl--~ 186 (237)
+.|| -+-|+.++.+|+.-++|.+.= --.+-+.+. -|.|. ...+-+.+|. ++..+.+= .
T Consensus 11 ~~~~~~~~l~~~~~~~l~~~lgkp~~~~~v~~~~~~~~~~~g~--------------~~~~~~v~i~--~~~g~t~eqk~ 74 (115)
T 2xcz_A 11 PAVADANSLLQELSSKLAELLGKPEKYVMTSLQCGVPMTFSGN--------------TEPTCYVEVK--SIGALDGSRTQ 74 (115)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTB--------------CSSCEEEEEE--ESSCCCTTHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHCCChHHEEEEEECCCceEECCC--------------CCcEEEEEEE--EecCCCHHHHH
Confidence 4556 678999999999999998751 111222222 22221 2455555555 45433222 3
Q ss_pred hhHHHHHHHHHHHhCCCCCceeEEeEcCC
Q 026508 187 PYKETIRTNLSELLGADPTVVNLKAKTHE 215 (237)
Q Consensus 187 p~~~~mr~~La~lL~i~~~~VnIKAtT~E 215 (237)
.+..++.+.|.+.||+++++|-|.-.-.+
T Consensus 75 ~l~~~i~~~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 2xcz_A 75 EVSELVCGHIEQNLGIPADRIYIGFEDVP 103 (115)
T ss_dssp HHHHHHHHHHHHHHCCCGGGEEEEEEECC
T ss_pred HHHHHHHHHHHHHhCcCcccEEEEEEECC
Confidence 58889999999999999999999887655
No 24
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ...
Probab=39.75 E-value=24 Score=32.18 Aligned_cols=93 Identities=24% Similarity=0.251 Sum_probs=48.9
Q ss_pred ChhHH---HHHHH-----HHHHHHhcCCCCCcccCCCCCCccCC-CCH-----HHHHH-HHHHHHHhCCCeEEE-EEEEE
Q 026508 115 SDGDV---LLHCV-----VDAILGALGLPDIGQIFPDSDPKWKG-APS-----SVFIK-EAVRLMDEAGYEIGN-LDATL 178 (237)
Q Consensus 115 SDGDV---LlHAI-----~DALLGA~glGDIG~~FPdtDp~~Kg-~dS-----~~lL~-~v~~ll~~~G~~I~N-iD~TI 178 (237)
+|-.| |.||| ++.+++..+.. -..++|...+-|.. ... ..=++ ++.++|.+.||.-+. +.++|
T Consensus 285 ~d~~vRqAi~~aiDr~~i~~~~~~g~~~~-a~~~~p~~~~~~~~~~~~~~~~~~~d~~~kAk~LL~eAG~~~G~~~~l~l 363 (517)
T 1jet_A 285 NDVRVRTALKLALDRDIIVNKVKNQGDLP-AYSYTPPYTDGAKLVEPEWFKWSQQKRNEEAKKLLAEAGFTADKPLTFDL 363 (517)
T ss_dssp TSHHHHHHHHHHSCHHHHHHTTTCSSCEE-CSSSSCTTSTTCCCCCCHHHHSCHHHHHHHHHHHHHHTTCCSSSCCEEEE
T ss_pred CCHHHHHHHHHhcCHHHHHHHHhcCCccc-cccccCCcccCCCccccchhhhcccCcHHHHHHHHHhCCCCCCCCeEEEE
Confidence 46544 66664 45554322111 13456666544421 111 12355 999999999996321 33455
Q ss_pred Ec-CCCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 179 IL-QRPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 179 i~-q~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
.. ..+......+.|++.|++.+||+ |+|+.
T Consensus 364 ~~~~~~~~~~~a~~iq~~l~~~iGI~---v~i~~ 394 (517)
T 1jet_A 364 LYNTSDLHKKLAIAVASIWKKNLGVN---VNLEN 394 (517)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHCCE---EEEEE
T ss_pred EecCCchHHHHHHHHHHHHHHhcCCE---EEEEe
Confidence 43 22322334556777777756876 55554
No 25
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=36.99 E-value=60 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=25.5
Q ss_pred CCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 183 PKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 183 PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
++=.|=+.++|+.||+.++.+++.|.|..
T Consensus 26 ~~~tpsk~eirekLAk~~~~~~d~Vvv~~ 54 (102)
T 1ywx_A 26 DAATPSIKDVKMKLVAVLNANKQVLVVDT 54 (102)
T ss_dssp SSCCCCHHHHHHHHHHHHTSCSTTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEc
Confidence 55568899999999999999999998865
No 26
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=36.92 E-value=42 Score=25.28 Aligned_cols=44 Identities=11% Similarity=-0.028 Sum_probs=32.5
Q ss_pred EEEEEEEcCC-CC--CchhHHHHHHHHHHHhCCCCCceeEEeEcCCC
Q 026508 173 NLDATLILQR-PK--LSPYKETIRTNLSELLGADPTVVNLKAKTHEK 216 (237)
Q Consensus 173 NiD~TIi~q~-PK--l~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~ 216 (237)
-+++..|... |. =..|-.+|.+.|.+.||++++||-|+-.-.+.
T Consensus 58 ~~~v~siG~~~~~~~n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d~~~ 104 (117)
T 3kan_A 58 QLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLES 104 (117)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECG
T ss_pred EEEEEEecCCCcHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCH
Confidence 3456777654 21 34578889999999999999999999865443
No 27
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=36.85 E-value=22 Score=23.16 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHhCCCCCceeEEeEcCCC--CCCcc
Q 026508 187 PYKETIRTNLSELLGADPTVVNLKAKTHEK--VDSLG 221 (237)
Q Consensus 187 p~~~~mr~~La~lL~i~~~~VnIKAtT~E~--LG~~G 221 (237)
.+..++-+.+++.||++++.|.|-..-.+. ++|-|
T Consensus 19 ~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG 55 (64)
T 3abf_A 19 ELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGG 55 (64)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETT
T ss_pred HHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECC
Confidence 367788888899999999999988876654 55544
No 28
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=35.57 E-value=40 Score=31.06 Aligned_cols=51 Identities=25% Similarity=0.481 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCeEE----------EEEEEEEc--CCCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 157 IKEAVRLMDEAGYEIG----------NLDATLIL--QRPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~----------NiD~TIi~--q~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
++++.++|++.||... .+.++|.. ..+--....+.|++.|++ +||+ |+|+.
T Consensus 333 ~~kAk~LL~eAG~~~~~dG~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~---v~i~~ 395 (528)
T 3ry3_A 333 IDKAKQILEQAGWQLNSQGTREKNGLPAKITLWYTSGDTTRRDLAQALRSMLKP-IGID---VDLKS 395 (528)
T ss_dssp HHHHHHHHHHTTCEECTTSSEEETTEECEEEEEEESSCHHHHHHHHHHHHHHGG-GTCE---EEEEE
T ss_pred HHHHHHHHHHcCCccCCCCEEccCCeEEEEEEEecCCCHHHHHHHHHHHHHHHH-cCCE---EEEEe
Confidence 5789999999999742 12344433 222222344566666665 6775 55553
No 29
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=33.67 E-value=12 Score=30.00 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCeEE--EEEEEEEc-CCCCCchhHHHHHHHHHHHh-CCC
Q 026508 157 IKEAVRLMDEAGYEIG--NLDATLIL-QRPKLSPYKETIRTNLSELL-GAD 203 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~--NiD~TIi~-q~PKl~p~~~~mr~~La~lL-~i~ 203 (237)
++++.++|++.||.-+ .+.++|.. ..|.....-+.|++.|.+.+ ||+
T Consensus 80 ~~kAk~LL~eaG~~~g~~~l~l~l~~~~~~~~~~~a~~i~~~l~~~i~GI~ 130 (229)
T 3o6p_A 80 TKKAKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQDALDGVK 130 (229)
T ss_dssp HHHHHHHHHHHHHHHTCSCEEEEEEEECSHHHHHHHHHHHHHHHHHSTTEE
T ss_pred HHHHHHHHHHcCcccCCCceEEEEEeCCChHHHHHHHHHHHHHHHhCCCcE
Confidence 5688889998888643 24555543 33333334556777777656 754
No 30
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=33.42 E-value=20 Score=31.47 Aligned_cols=93 Identities=18% Similarity=0.324 Sum_probs=55.4
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCc--------c-CCCCHHHHHHHHHHHHHhCCCe--EEEEEEEE-
Q 026508 111 CEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPK--------W-KGAPSSVFIKEAVRLMDEAGYE--IGNLDATL- 178 (237)
Q Consensus 111 L~gHSDGDVLlHAI~DALLGA~glGDIG~~FPdtDp~--------~-Kg~dS~~lL~~v~~ll~~~G~~--I~NiD~TI- 178 (237)
-.||+|.| ..++|.++|..++-++|.+ -|+ . ++.+-..++++.-++.++ +.. +.++-..-
T Consensus 3 ~~~~~~~~------~~~ml~~~g~~~~~~~~~~-~p~~~~~~~~~lp~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~g~~ 74 (438)
T 1wyu_A 3 YTPHTEEE------IREMLRRVGAASLEDLFAH-LPKEILSPPIDLPEPLPEWKVLEELRRLAAQ-NLPAHKAFLGGGVR 74 (438)
T ss_dssp CCCCCHHH------HHHHHHHHTCSSTGGGGTT-SCGGGSSCCCCCCCCCCHHHHHHHHHHHHHT-SCCCTTCCCCSSCC
T ss_pred CCCcCHHH------HHHHHHHcCCCCHHHHHHh-CcHHHhcCCCCCCCCCCHHHHHHHHHHHHhc-CcCccccccCCCcc
Confidence 36889988 3678889999998888854 221 1 467778888876665543 211 11110000
Q ss_pred ----------EcCCCCC----ch-----------hHHHHHHHHHHHhCCCCCceeEEe
Q 026508 179 ----------ILQRPKL----SP-----------YKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 179 ----------i~q~PKl----~p-----------~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
+++++.. .| ...++++.+++++|++.++|.+-.
T Consensus 75 ~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~ 132 (438)
T 1wyu_A 75 SHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYD 132 (438)
T ss_dssp CCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSS
T ss_pred CCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeC
Confidence 1111111 22 267889999999999866554433
No 31
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=32.86 E-value=64 Score=23.60 Aligned_cols=43 Identities=7% Similarity=0.073 Sum_probs=36.9
Q ss_pred CchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceE
Q 026508 185 LSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIA 227 (237)
Q Consensus 185 l~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIa 227 (237)
.....+++-+.+++.||.|++.+-|-......|-|-|+.+-.+
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~~ 58 (115)
T 1uiz_A 16 PDTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCA 58 (115)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCE
T ss_pred HHHHHHHHHHHHHHHHCcChhHEEEEEECCcceEECCCCCCeE
Confidence 5678999999999999999999999998888888878776543
No 32
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=32.65 E-value=38 Score=30.74 Aligned_cols=46 Identities=26% Similarity=0.452 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCeEE-EEEEEEEc--CCCCCchhHHHHHHHHHHHhCCC
Q 026508 157 IKEAVRLMDEAGYEIG-NLDATLIL--QRPKLSPYKETIRTNLSELLGAD 203 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~-NiD~TIi~--q~PKl~p~~~~mr~~La~lL~i~ 203 (237)
++++.++|++.||.-+ .+.++|.. ..|......+.|++.|++ +||+
T Consensus 310 ~~kAk~LL~eAG~~~g~~l~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~ 358 (486)
T 3rqt_A 310 IEQAKMLLAKDGYTKEHPLKIKLITYDGRPELSKIAQVLQSDAKK-ANIE 358 (486)
T ss_dssp HHHHHHHHHTTTCCSSSCEEEEEEECSSSTHHHHHHHHHHHHHHT-TTEE
T ss_pred HHHHHHHHHHCCCCCCCceEEEEEecCCCccHHHHHHHHHHHHHh-cCCE
Confidence 5789999999999642 34566654 334334455666777765 5754
No 33
>3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding, voluminous binding cavity, venus FLY- trap, peptide binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A 3drh_A 3dri_A 3drj_A 3drk_A 3fto_A 3rya_A 3ryb_A
Probab=31.91 E-value=50 Score=30.89 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCeEE-----------EEEEEEEc--CCCCCchhHHHHHHHHHHHhCCCCCceeEE
Q 026508 157 IKEAVRLMDEAGYEIG-----------NLDATLIL--QRPKLSPYKETIRTNLSELLGADPTVVNLK 210 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~-----------NiD~TIi~--q~PKl~p~~~~mr~~La~lL~i~~~~VnIK 210 (237)
++++.++|++.||.-. .+.+++.. ..|......+.|++.|++ +||+ |+|+
T Consensus 381 ~~kAk~LL~eAG~~~~~~dG~~~~~G~~l~l~~~~~~~~~~~~~~a~~i~~~l~~-iGI~---v~i~ 443 (590)
T 3drf_A 381 LDKANKLLDEDGWKLNKSTGYREKDGKELSLVYAARVGDANAETIAQNYIQQWKK-IGVK---VSLY 443 (590)
T ss_dssp HHHHHHHHHHTTCEEETTTTEEEETTEECEEEEECBCCSTTHHHHHHHHHHHHHH-TTCE---EEEG
T ss_pred HHHHHHHHHHCCCcccCCCceECCCCcEEEEEEEecCCChHHHHHHHHHHHHHHH-hCcE---EEEe
Confidence 6899999999999842 24555543 334444556677777776 6865 5554
No 34
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=31.89 E-value=1.3e+02 Score=22.40 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccc
Q 026508 186 SPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRS 225 (237)
Q Consensus 186 ~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~eg 225 (237)
.....++-+.+|++||=|.+.|.|-...+..|-|-|..+-
T Consensus 16 ~~l~~~ls~~~a~~lgKpe~~vmV~v~~~~~m~fgGs~~P 55 (117)
T 3kan_A 16 AGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEP 55 (117)
T ss_dssp TTHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSS
T ss_pred HHHHHHHHHHHHHHHCCChHHEEEEEeCCCeEEECCCCCc
Confidence 4699999999999999999999999999999999998764
No 35
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=31.71 E-value=50 Score=25.10 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=36.4
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCcccCCCCCCccCCCCHHHHHHHHHHHHHhCCCeEEEE
Q 026508 112 EAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNL 174 (237)
Q Consensus 112 ~gHSDGDVLlHAI~DALLGA~glGDIG~~FPdtDp~~Kg~dS~~lL~~v~~ll~~~G~~I~Ni 174 (237)
.+|||-+..- -|||-----+|..|- +|.--|+- +.++++|+..||+++.+
T Consensus 20 D~~sDP~LM~------~LgA~~~~~lgn~f~----ey~v~dpP---r~VLnKLE~~G~rVvsm 69 (83)
T 1jg5_A 20 DEHSDPELMQ------QLGASKRRVLGNNFY----EYYVNDPP---RIVLDKLECRGFRVLSM 69 (83)
T ss_dssp CTTSCHHHHH------HTTCEEECCTTCSSC----EEEESSCH---HHHHHHHHHTTCEEEEE
T ss_pred CccCCHHHHH------HhccceehhhccccE----EEEcCCCh---HHHHHHHhccCeEEEEE
Confidence 6899988764 488887777777774 34444443 35788999999999765
No 36
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=31.39 E-value=1.3e+02 Score=22.43 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCCCCC-----cccCCCCCCccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCCCC--CchhHH
Q 026508 118 DVLLHCVVDAILGALGLPDI-----GQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPK--LSPYKE 190 (237)
Q Consensus 118 DVLlHAI~DALLGA~glGDI-----G~~FPdtDp~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~PK--l~p~~~ 190 (237)
..|+-++.+|+.-++|.+.= =..+|+.+--|.| ...=....|.++++.-+.+ -..+..
T Consensus 16 ~~l~~~i~~al~~~lg~p~~~~~v~i~~~~~~~~~~gg---------------~~~~~~~~i~i~~~~grt~eqK~~l~~ 80 (128)
T 1mww_A 16 EKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPF---------------DRSDDYTVIEINLMAGRMEGTKKRLIK 80 (128)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCT---------------TSCTTCEEEEEEEETTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcChHHEEEEEEEeChHHeecCC---------------CCCCCcEEEEEEECCCCCHHHHHHHHH
Confidence 45888999999988888763 2223333333344 2222346677777654321 134778
Q ss_pred HHHHHHHHHhCCCCCceeEEeEcCC
Q 026508 191 TIRTNLSELLGADPTVVNLKAKTHE 215 (237)
Q Consensus 191 ~mr~~La~lL~i~~~~VnIKAtT~E 215 (237)
++-+.|++.||+++++|.|.-.-.+
T Consensus 81 ~l~~~l~~~lg~~~~~v~V~i~e~~ 105 (128)
T 1mww_A 81 MLFSELEYKLGIRAHDVEITIKEQP 105 (128)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEEEEC
T ss_pred HHHHHHHHHhCcChhhEEEEEEECC
Confidence 8888899999999999998876554
No 37
>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; periplasmic binding protein, cellulose, thermophilic proteins; HET: CBI; 1.50A {Thermotoga maritima} PDB: 2o7j_A* 3i5o_A*
Probab=30.84 E-value=48 Score=31.00 Aligned_cols=51 Identities=31% Similarity=0.453 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCeEE-----------EEE-EEEEcCC--CCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 157 IKEAVRLMDEAGYEIG-----------NLD-ATLILQR--PKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~-----------NiD-~TIi~q~--PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
++++.++|++.||... .+. ++|.... +......+.|+++|++ +||+ |+|+.
T Consensus 344 ~~kAk~LL~eAG~~~~~dG~~~~~~G~~l~~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~---v~i~~ 408 (592)
T 2o7i_A 344 LDMANKILDEAGYKKGPDGVRVGPDGTKLGPYTISVPYGWTDWMMMCEMIAKNLRS-IGID---VKTEF 408 (592)
T ss_dssp HHHHHHHHHHTTCEECTTSCEECTTCCBCCCEEEECCTTCHHHHHHHHHHHHHHHH-TTCC---EEEEC
T ss_pred HHHHHHHHHHcCCCCCCCCeEECCCCCEeeEEEEEeCCCchHHHHHHHHHHHHHHH-cCCe---EEEEe
Confidence 5789999999999741 133 6665432 3233455667888877 6876 55553
No 38
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=30.66 E-value=42 Score=24.88 Aligned_cols=88 Identities=11% Similarity=0.002 Sum_probs=55.2
Q ss_pred CCCh-hHHHHHHHHHHHHHhcCCCC--CcccCCCCCCccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCCCC--Cch
Q 026508 113 AHSD-GDVLLHCVVDAILGALGLPD--IGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPK--LSP 187 (237)
Q Consensus 113 gHSD-GDVLlHAI~DALLGA~glGD--IG~~FPdtDp~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~PK--l~p 187 (237)
+.|| -+-|+-++.+|+.-+++.+. +--.|-+.+.-|-+- +...+-+.+ ++++..+.+ -..
T Consensus 11 ~~~~~~~~l~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g-------------~~~~~~~i~--I~~~~g~~~eqk~~ 75 (119)
T 2os5_A 11 PDKDVPANFEERLTDLLAESMNKPRNRIAIEVLAGQRITHGA-------------SRNPVAVIK--VESIGALSADDNIR 75 (119)
T ss_dssp CGGGSCTTHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTT-------------BCSSCEEEE--EEESSCCCHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHCcChHHEEEEEECCccEEEcC-------------CCCCeEEEE--EEEecCCCHHHHHH
Confidence 4455 46688889999988888876 222222222222221 113454544 445543321 235
Q ss_pred hHHHHHHHHHHHhCCCCCceeEEeEcCC
Q 026508 188 YKETIRTNLSELLGADPTVVNLKAKTHE 215 (237)
Q Consensus 188 ~~~~mr~~La~lL~i~~~~VnIKAtT~E 215 (237)
+..++.+.|.+.||+++++|-|.-.-.+
T Consensus 76 l~~~i~~~l~~~lgi~~~~v~I~~~e~~ 103 (119)
T 2os5_A 76 HTQKITQFCQDTLKLPKDKVIITYFDLQ 103 (119)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEEECC
T ss_pred HHHHHHHHHHHHhCcCcccEEEEEEECC
Confidence 8888899999999999999999987665
No 39
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=30.50 E-value=37 Score=24.91 Aligned_cols=88 Identities=16% Similarity=0.101 Sum_probs=54.7
Q ss_pred CCCh-hHHHHHHHHHHHHHhcCCCC--CcccCCCCCCccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCCCC--Cch
Q 026508 113 AHSD-GDVLLHCVVDAILGALGLPD--IGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPK--LSP 187 (237)
Q Consensus 113 gHSD-GDVLlHAI~DALLGA~glGD--IG~~FPdtDp~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~PK--l~p 187 (237)
+.|| -+-|+-++.+|+.-+++.+. +--.|-+.+.-|-+-+ ...+-+.+|. ++..+.+ -..
T Consensus 11 ~~~~~~~~l~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~-------------~~~~~~v~i~--~~~g~~~eqk~~ 75 (115)
T 1uiz_A 11 CRDSVPDTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDS-------------TDPCAVCSLC--SIGKIGGPQNKS 75 (115)
T ss_dssp CGGGSCTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTB-------------CSSCEEEEEE--ESSCCSHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHCcChhHEEEEEECCcceEECCC-------------CCCeEEEEEE--EecCCCHHHHHH
Confidence 4455 46688888888888888775 2222322222121211 2355555444 4543321 234
Q ss_pred hHHHHHHHHHHHhCCCCCceeEEeEcCC
Q 026508 188 YKETIRTNLSELLGADPTVVNLKAKTHE 215 (237)
Q Consensus 188 ~~~~mr~~La~lL~i~~~~VnIKAtT~E 215 (237)
+..++.+.|.+.||+++++|-|.-.-.+
T Consensus 76 l~~~i~~~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 1uiz_A 76 YTKLLCDILTKQLNIPANRVYINYYDLN 103 (115)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEEECC
T ss_pred HHHHHHHHHHHHhCcCcceEEEEEEECC
Confidence 8888899999999999999999887655
No 40
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=30.32 E-value=38 Score=24.72 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHhcCCCC--CcccCCCCCC-ccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCCCC--CchhHHH
Q 026508 117 GDVLLHCVVDAILGALGLPD--IGQIFPDSDP-KWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPK--LSPYKET 191 (237)
Q Consensus 117 GDVLlHAI~DALLGA~glGD--IG~~FPdtDp-~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~PK--l~p~~~~ 191 (237)
-+-|+-++.+|+.-+++.+. +--.|-+.+. -|.|- ...+-+.+|. ++..+.+ -..+..+
T Consensus 15 ~~~l~~~l~~~l~~~l~kPe~~~~v~~~~~~~~~~~g~--------------~~~~~~i~i~--~~~g~~~eqk~~l~~~ 78 (113)
T 1hfo_A 15 PSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGS--------------TNPAAFGTLM--SIGGIEPSRNRDHSAK 78 (113)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTB--------------CSSCEEEEEE--ESSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHEEEEEeCCccEEecCC--------------CCCeEEEEEE--EecCCCHHHHHHHHHH
Confidence 45677788888888888775 2222222222 22221 1445555444 5543321 2358888
Q ss_pred HHHHHHHHhCCCCCceeEEeEcCC
Q 026508 192 IRTNLSELLGADPTVVNLKAKTHE 215 (237)
Q Consensus 192 mr~~La~lL~i~~~~VnIKAtT~E 215 (237)
+.+.|.+.||+++++|-|.-.-.+
T Consensus 79 i~~~l~~~lgi~~~~v~I~~~e~~ 102 (113)
T 1hfo_A 79 LFDHLNTKLGIPKNRMYIHFVNLN 102 (113)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred HHHHHHHHhCcCcCeEEEEEEECC
Confidence 999999999999999999887555
No 41
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=30.12 E-value=45 Score=22.63 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=25.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCeEEEEE--------EEEEcCCCCC
Q 026508 146 PKWKGAPSSVFIKEAVRLMDEAGYEIGNLD--------ATLILQRPKL 185 (237)
Q Consensus 146 p~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD--------~TIi~q~PKl 185 (237)
|.+.|++ ++++.+.|++.||.+..+. -+||.|.|+=
T Consensus 11 Pdv~G~~----~~~A~~~L~~~Gl~~~~~~~~~~~~~~G~Vi~q~P~~ 54 (71)
T 3ouv_A 11 PDVAGQT----VDVAQKNMNVYGFTKFSQASVDSPRPAGEVTGTNPPA 54 (71)
T ss_dssp CCCTTCB----HHHHHHHHHHTTCCCEEEEEECCSSCTTBEEEEESCT
T ss_pred CCcCCCC----HHHHHHHHHHCCCeEEEEEEeCCCCCCCEEEEeeCCC
Confidence 4567776 5688999999999876542 2567777753
No 42
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=29.87 E-value=57 Score=29.51 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=52.5
Q ss_pred eeeCCCCCCCCCChhHH---HHHHH-----HHHHHHhcCCCCCcccCCCCCCccCCCC---HHHHHHHHHHHHHhCCCeE
Q 026508 103 INVPHERGCEAHSDGDV---LLHCV-----VDAILGALGLPDIGQIFPDSDPKWKGAP---SSVFIKEAVRLMDEAGYEI 171 (237)
Q Consensus 103 V~Ip~~~GL~gHSDGDV---LlHAI-----~DALLGA~glGDIG~~FPdtDp~~Kg~d---S~~lL~~v~~ll~~~G~~I 171 (237)
+.+....+.. +|-.| |.||| ++++++..+.. -..+||...+ |...+ -..=++++.++|.+.||.-
T Consensus 251 l~~N~~~~p~--~d~~vRqAl~~aiDr~~i~~~~~~g~~~~-a~~~~p~~~~-~~~~~~~~~~yd~~kAk~LL~eaG~~~ 326 (502)
T 2noo_A 251 LALNTAKAPT--NELAVREALNYAVNKKSLIDNALYGTQQV-ADTLFAPSVP-XANLGLKPSQYDPQKAKALLEKAGWTL 326 (502)
T ss_dssp EEECTTSTTT--TSHHHHHHHHHHCCHHHHHHHHTTTCSEE-CSSSSCTTST-TCCCCCCCCCCCHHHHHHHHHHTTCBC
T ss_pred EEECCCCccc--cCHHHHHHHHHhcCHHHHHHHHhcCccee-ccCCCCCCCc-cccCcCCCCCCCHHHHHHHHHHcCCCc
Confidence 3444444332 46554 66664 66666432211 1235555433 21110 0112578999999999952
Q ss_pred -----------EEEEEEEEc--CCCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 172 -----------GNLDATLIL--QRPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 172 -----------~NiD~TIi~--q~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
..+.++|.. ..|......+.|++.|++ +||+ |+|+.
T Consensus 327 ~~~dg~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~---v~i~~ 375 (502)
T 2noo_A 327 PAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQ-IGAD---VSLIG 375 (502)
T ss_dssp CTTCSSCEETTEECEEEEEEETTCHHHHHHHHHHHHHHHT-TTCE---EEEEE
T ss_pred CCCCceEccCCeEEEEEEEeCCCChhHHHHHHHHHHHHHh-cCcE---EEEEe
Confidence 124556654 444344455667777766 4765 55554
No 43
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=29.27 E-value=1.4e+02 Score=21.87 Aligned_cols=42 Identities=7% Similarity=0.202 Sum_probs=36.4
Q ss_pred CchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccce
Q 026508 185 LSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSI 226 (237)
Q Consensus 185 l~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egI 226 (237)
.....+++-+.+++.||.|++.+-|-......|-|-|+.+-.
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~ 57 (119)
T 2os5_A 16 PANFEERLTDLLAESMNKPRNRIAIEVLAGQRITHGASRNPV 57 (119)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSC
T ss_pred HHHHHHHHHHHHHHHHCcChHHEEEEEECCccEEEcCCCCCe
Confidence 566899999999999999999999999988888887877544
No 44
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=29.14 E-value=37 Score=29.53 Aligned_cols=56 Identities=16% Similarity=0.024 Sum_probs=39.3
Q ss_pred ccCCCCHHHHHHH--------HHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCcee
Q 026508 147 KWKGAPSSVFIKE--------AVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 208 (237)
Q Consensus 147 ~~Kg~dS~~lL~~--------v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~Vn 208 (237)
.|-.+++....+. +.+.+++.|+.+..||..+.-|-- ..|.+.+++.|+++.+++-
T Consensus 209 ~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~v~Hq~~------~~i~~~~~~~lgl~~ek~~ 272 (323)
T 3il3_A 209 GYIEMQGNETFKLAVRELSNVVEETLLANNLDKKDLDWLVPHQAN------LRIITATAKKLEMDMSQVV 272 (323)
T ss_dssp SCCEECHHHHHHHHHHHHHHHHHHHHHTTTCCTTTCCEEEECCSC------HHHHHHHHHHTTCCGGGBC
T ss_pred CcEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCC------HHHHHHHHHHcCcCHHHhh
Confidence 3444556554433 345677889999999988765543 3567888999999998864
No 45
>4af3_D Incenp, inner centromere protein; transferase-inhibitor complex, aurkb; HET: VX6; 2.75A {Homo sapiens}
Probab=29.06 E-value=23 Score=25.56 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCCCcccCCCCCCccCCCCHH
Q 026508 125 VDAILGALGLPDIGQIFPDSDPKWKGAPSS 154 (237)
Q Consensus 125 ~DALLGA~glGDIG~~FPdtDp~~Kg~dS~ 154 (237)
.|.|+|...--|+-++|+.++++|+...|.
T Consensus 33 pd~IFG~i~p~~LeeIF~~~k~r~~kRtSS 62 (71)
T 4af3_D 33 LLELFGTILPLDLEDIFKKSKPRYHKRTSS 62 (71)
T ss_dssp HHHHHCCCCCCCSTTTCC------------
T ss_pred HHHHcCCCCCCCHHHHhCccccccccCCCc
Confidence 488999999999999999998898665553
No 46
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=28.96 E-value=82 Score=22.85 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=36.5
Q ss_pred CchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceE
Q 026508 185 LSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIA 227 (237)
Q Consensus 185 l~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIa 227 (237)
.....+++-+.+++.||.|.+.+-|-......|-|-|+.+-.+
T Consensus 15 ~~~l~~~l~~~l~~~l~kPe~~~~v~~~~~~~~~~~g~~~~~~ 57 (113)
T 1hfo_A 15 PSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAA 57 (113)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCE
T ss_pred HHHHHHHHHHHHHHHHCCChHHEEEEEeCCccEEecCCCCCeE
Confidence 5668999999999999999999999998888888877765443
No 47
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=27.69 E-value=90 Score=24.12 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=37.1
Q ss_pred CCchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccce
Q 026508 184 KLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSI 226 (237)
Q Consensus 184 Kl~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egI 226 (237)
+......++-+.|++++|-|.+.|.|-......|-|-|..+-.
T Consensus 36 ~~~~l~~~ls~~la~~lgKPe~~v~V~~~~~~~m~fgGs~dP~ 78 (133)
T 3fwt_A 36 KRANLSAAYGMICREELGKPEDFVMTAFSDKTPISFQGSTAPA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCCEEEEECSCCCCBTTBCSSC
T ss_pred HHHHHHHHHHHHHHHHhCcCcCEEEEEEECCceEEECCCCCCe
Confidence 3467888889999999999999999999999999998887643
No 48
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=27.61 E-value=38 Score=26.40 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=25.4
Q ss_pred CchhHHHHHHHHHHHhCCCCCceeEEeEcC
Q 026508 185 LSPYKETIRTNLSELLGADPTVVNLKAKTH 214 (237)
Q Consensus 185 l~p~~~~mr~~La~lL~i~~~~VnIKAtT~ 214 (237)
=.|-+.++|+.||+.++.+++.|.|..=-+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T 66 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRS 66 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEe
Confidence 357899999999999999999998865433
No 49
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A*
Probab=27.58 E-value=48 Score=30.37 Aligned_cols=51 Identities=12% Similarity=0.320 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCe-------E-----EEEEEEEEcCC--CCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 157 IKEAVRLMDEAGYE-------I-----GNLDATLILQR--PKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 157 L~~v~~ll~~~G~~-------I-----~NiD~TIi~q~--PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
++++.++|++.||. + ..+.+++.... |.....-+.|++.|++ +||+ |+|+.
T Consensus 323 ~~kAk~LL~eAG~~~~~~dG~~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~---v~i~~ 387 (529)
T 1zu0_A 323 VEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQE-VGIK---AKART 387 (529)
T ss_dssp HHHHHHHHHHTTCBCCSSSSSCBCTTCCCCCEEEECCTTCHHHHHHHHHHHHHHHH-TTCC---EEEEC
T ss_pred HHHHHHHHHHcCCeEECCCceEECCCCcEEEEEEEecCCCHHHHHHHHHHHHHHHH-cCCe---EEEEe
Confidence 57899999999997 1 11455665432 2233455667778877 6876 55554
No 50
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=27.45 E-value=1.7e+02 Score=21.35 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccce
Q 026508 186 SPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSI 226 (237)
Q Consensus 186 ~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egI 226 (237)
.....++-+.+|++||-|.+.|.|-......|-|-|+.+-.
T Consensus 17 ~~l~~~ls~~~a~~lgKPe~~v~V~~~~~~~m~fgGs~~p~ 57 (114)
T 4dh4_A 17 DALLKDAEKAVADALGKPLSYVMVGYSQTGQMRFGGSSDPC 57 (114)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEEEECSCCCBTTBCSCC
T ss_pred HHHHHHHHHHHHHHHCCChHHEEEEEeCCceEEECCcCCCe
Confidence 34677888999999999999999999999999998887643
No 51
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=27.25 E-value=1.1e+02 Score=23.47 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=24.2
Q ss_pred CchhHHHHHHHHHHHhCCCCCceeEEeE
Q 026508 185 LSPYKETIRTNLSELLGADPTVVNLKAK 212 (237)
Q Consensus 185 l~p~~~~mr~~La~lL~i~~~~VnIKAt 212 (237)
=.|-+.++|+.||+.++.+++.|.|..=
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~ 55 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRI 55 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEee
Confidence 4577899999999999999999988653
No 52
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=26.98 E-value=69 Score=24.03 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=35.7
Q ss_pred CchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccceE
Q 026508 185 LSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSIA 227 (237)
Q Consensus 185 l~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egIa 227 (237)
.....+++-+.+++.||.|.+.+-|-......|-|-|+.+-.+
T Consensus 16 ~~~l~~~l~~ala~~lgkPe~~~~V~~~~~~~~~~gg~~dp~~ 58 (125)
T 2wkb_A 16 AQNTLSEIEDAISNILGKPVAYIMSNYDYQKNLRFSGSNEGYC 58 (125)
T ss_dssp HHHHHHHHHHHHHHHHCSCCTTCEEEEEECTTCEETTBCSSCE
T ss_pred HHHHHHHHHHHHHHHhCCCHHHEEEEEEcCCceEeCCCCCCcE
Confidence 3456788889999999999999999999888888888776543
No 53
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}
Probab=26.71 E-value=64 Score=27.81 Aligned_cols=43 Identities=28% Similarity=0.240 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCce
Q 026508 159 EAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVV 207 (237)
Q Consensus 159 ~v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~V 207 (237)
.+.+.+++.|+.+.+||..++-|-- ..|.+.+++.||++.+++
T Consensus 254 ~i~~~L~~~gl~~~did~~v~Hq~~------~~i~~~~~~~Lgl~~~~~ 296 (350)
T 4ewp_A 254 VAREALDAAGVEPEDLAAFIPHQAN------MRIIDEFAKQLKLPESVV 296 (350)
T ss_dssp HHHHHHHHHTCCGGGEEEEEECCSC------HHHHHHHHHHTTCCTTSE
T ss_pred HHHHHHHhhcCChhHhceEEecCCC------HHHHHHHHHHcCcChHhE
Confidence 3456778899999999998876542 356778899999998875
No 54
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=26.66 E-value=71 Score=20.12 Aligned_cols=30 Identities=7% Similarity=0.178 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHhCCCCCceeEEeEcCC
Q 026508 186 SPYKETIRTNLSELLGADPTVVNLKAKTHE 215 (237)
Q Consensus 186 ~p~~~~mr~~La~lL~i~~~~VnIKAtT~E 215 (237)
....+++-+.+++.||++.+.|.|-..-.+
T Consensus 20 ~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~ 49 (63)
T 2x4k_A 20 KNLVSEVTDAVEKTTGANRQAIHVVIEEMK 49 (63)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCcCcccEEEEEEEcC
Confidence 346777888888899999999988776553
No 55
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=26.60 E-value=49 Score=24.89 Aligned_cols=87 Identities=23% Similarity=0.257 Sum_probs=55.1
Q ss_pred CCCh--hHHHHHHHHHHHHHhcCCCCC--cccC-CCCCCccCCCCHHHHHHHHHHHHHhCCCeEEEEEEEEEcCC--CCC
Q 026508 113 AHSD--GDVLLHCVVDAILGALGLPDI--GQIF-PDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQR--PKL 185 (237)
Q Consensus 113 gHSD--GDVLlHAI~DALLGA~glGDI--G~~F-PdtDp~~Kg~dS~~lL~~v~~ll~~~G~~I~NiD~TIi~q~--PKl 185 (237)
+.|| -+-|+-++.+|+.-+++.+.= --.| |+..=-|.|. ...+-+.+|. ++..+ -.-
T Consensus 10 ~~s~~~~~~l~~~l~~ala~~lgkPe~~~~V~~~~~~~~~~gg~--------------~dp~~~v~I~--~~~g~t~eqk 73 (125)
T 2wkb_A 10 SIPDDKAQNTLSEIEDAISNILGKPVAYIMSNYDYQKNLRFSGS--------------NEGYCFVRLT--SIGGINRSNN 73 (125)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEEECTTCEETTB--------------CSSCEEEEEE--CC-----CTH
T ss_pred CCchhhHHHHHHHHHHHHHHHhCCCHHHEEEEEEcCCceEeCCC--------------CCCcEEEEEE--ECCCCCHHHH
Confidence 4456 577888999999999998872 1112 2222223332 2455555555 34322 223
Q ss_pred chhHHHHHHHHHHHhCCCCCceeEEeEcCC
Q 026508 186 SPYKETIRTNLSELLGADPTVVNLKAKTHE 215 (237)
Q Consensus 186 ~p~~~~mr~~La~lL~i~~~~VnIKAtT~E 215 (237)
..+..++-+.|.+.||+++++|-|.-.-.+
T Consensus 74 ~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~ 103 (125)
T 2wkb_A 74 SLLADKITKILSNHLSVKPRRVYIEFRDCS 103 (125)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEEEC--
T ss_pred HHHHHHHHHHHHHHhCcCcceEEEEEEECC
Confidence 468899999999999999999999987655
No 56
>2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str}
Probab=26.33 E-value=80 Score=30.00 Aligned_cols=93 Identities=24% Similarity=0.310 Sum_probs=50.0
Q ss_pred ChhHH---HHHH-----HHHHHHHhcCCC-C-CcccCCCCCCccCCC-CHHHHHHHHHHHHHhCCCeEE-----------
Q 026508 115 SDGDV---LLHC-----VVDAILGALGLP-D-IGQIFPDSDPKWKGA-PSSVFIKEAVRLMDEAGYEIG----------- 172 (237)
Q Consensus 115 SDGDV---LlHA-----I~DALLGA~glG-D-IG~~FPdtDp~~Kg~-dS~~lL~~v~~ll~~~G~~I~----------- 172 (237)
+|-.| |.|| |++.+++-.+.. - -..+||...+.|... ....=++++.++|.+.||.-.
T Consensus 314 ~d~~vRqAi~~AIDr~~i~~~~~~g~~~~~~~~~~~~pp~~~~~~~~~~~~~d~~kAk~LL~eAG~~~~~~~~~~~~~~~ 393 (621)
T 2grv_A 314 ADPQVRKAILGLIDVDLLASVGAGDDNTVTLAQAQVRSPSDPGYVPTAPPAMTRDDALELLRDAGYVSEPVPPPDNTADD 393 (621)
T ss_dssp CSHHHHHHHHHTSCHHHHHHHHHCSSSCCEECCCSSSCTTSTTCCCCCCCCCCHHHHHHHHHHTTCEEECCCCC------
T ss_pred CCHHHHHHHHHhcCHHHHHHHHhccccccccccccccCCCCccccccCccCCCHHHHHHHHHHcCCcccccccccccccc
Confidence 46554 6664 467666522100 0 123455544433221 001126789999999999752
Q ss_pred ---------------EEEEEEEc--CCCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 173 ---------------NLDATLIL--QRPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 173 ---------------NiD~TIi~--q~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
.+.++|.. ..|.....-+.|++.|.+ +||+ |+|+.
T Consensus 394 ~~~~~~dG~~~~dG~~l~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~---v~i~~ 445 (621)
T 2grv_A 394 PPPDNGRERIVKDGVPLTIVLGVASNDPTSVAVANTAADQLRN-VGID---ASVLA 445 (621)
T ss_dssp ------CCEEEETTEECEEEEEEETTCHHHHHHHHHHHHHHHH-TTCE---EEEEE
T ss_pred ccccCCCceeccCCeEEEEEEEeCCCChHHHHHHHHHHHHHHh-cCCE---EEEEe
Confidence 13455543 344444556667777776 5876 55554
No 57
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A
Probab=26.29 E-value=53 Score=29.05 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=34.2
Q ss_pred HHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCcee
Q 026508 160 AVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 208 (237)
Q Consensus 160 v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~Vn 208 (237)
+.+.+++.|+.+.+||..|+-|-- ..|.+.+++.||++.+++-
T Consensus 272 i~~~L~~~gl~~~did~~v~Hq~n------~~i~~~~~~~Lgl~~ek~~ 314 (365)
T 3gwa_A 272 ADRLLALAGEPRENIDCFVLHQAN------RFMLDALRKKMKIPEHKFP 314 (365)
T ss_dssp HHHHHHHHTCCGGGCSEEEECCCC------HHHHHHHHHHHTCCGGGSC
T ss_pred HHHHHHHcCCCHHHCCEEEEcCCC------HHHHHHHHHHhCCCHHHHH
Confidence 446778889999999998876632 3467888999999999875
No 58
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=26.18 E-value=97 Score=22.86 Aligned_cols=40 Identities=10% Similarity=0.234 Sum_probs=36.2
Q ss_pred chhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccc
Q 026508 186 SPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRS 225 (237)
Q Consensus 186 ~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~eg 225 (237)
.....++-+.+|++||-|.+.|.|-...+..|-|-|..+-
T Consensus 16 ~~~~~~ls~~~a~~lgKpe~~vmV~~~~~~~m~fgGs~~P 55 (114)
T 3djh_A 16 DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEP 55 (114)
T ss_dssp TTHHHHHHHHHHHHHCCCGGGCEEEEECSCEEEETTBCSS
T ss_pred HHHHHHHHHHHHHHHCCCHHHeEEEEeCCceEEEcCcCCC
Confidence 4789999999999999999999999999999999887764
No 59
>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide complex, peptide binding protein; 1.30A {Thermus thermophilus}
Probab=26.00 E-value=51 Score=30.68 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=45.6
Q ss_pred HHHH-----HHHHHHHhcCCCCCcccCCCCCCccCCC-C-HHHHHHHHHHHHHhCCCeEE--------------EEEEEE
Q 026508 120 LLHC-----VVDAILGALGLPDIGQIFPDSDPKWKGA-P-SSVFIKEAVRLMDEAGYEIG--------------NLDATL 178 (237)
Q Consensus 120 LlHA-----I~DALLGA~glGDIG~~FPdtDp~~Kg~-d-S~~lL~~v~~ll~~~G~~I~--------------NiD~TI 178 (237)
|.|| |++.+++-.+.. -..++|...+-|... . -..=++++.++|.+.||... .+.+++
T Consensus 331 i~~AIDr~~i~~~~~~g~~~~-a~~~~pp~~~~~~~~~~~~~yd~~kAk~LL~eAG~~~~~dG~~~~p~~G~~~~l~l~l 409 (603)
T 2d5w_A 331 ILHALNREGLVKAFFDGLQPV-AHTWIAPVNPLFNPNVKKYEFDLKKAEALLAEMGWRKGPDGILQRTVNGRTVRFEIEY 409 (603)
T ss_dssp HHHTSCHHHHHHHHHTTSSCB-CSSSSCTTSTTCCTTSCCCCCCHHHHHHHHHHTTCEECTTSCEEEEETTEEEECEEEE
T ss_pred HHHhhCHHHHHHHHhcCCCcc-cCCCCCCCCcccccccccCCCCHHHHHHHHHHcCCcCCCCCeEeeCCCCcEeeEEEEE
Confidence 6655 567776533321 123455443322210 0 01125789999999999621 245555
Q ss_pred EcC--CCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 179 ILQ--RPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 179 i~q--~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
... .|.....-+.|++.|++ +||+ |+|+.
T Consensus 410 ~~~~~~~~~~~~a~~iq~~l~~-iGI~---v~i~~ 440 (603)
T 2d5w_A 410 VTTAGNVVRERTQQFFAEDLKK-IGIA---VKINN 440 (603)
T ss_dssp ECBTTCHHHHHHHHHHHHHHHH-TTCE---EEECC
T ss_pred EecCCChHHHHHHHHHHHHHHh-cCCE---EEEee
Confidence 543 23233445667777776 5865 55543
No 60
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=25.68 E-value=48 Score=27.18 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCCcccCCCCCCccCCCCHHHHHHHHHHHHHhCCCeEEEE
Q 026508 124 VVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNL 174 (237)
Q Consensus 124 I~DALLGA~glGDIG~~FPdtDp~~Kg~dS~~lL~~v~~ll~~~G~~I~Ni 174 (237)
+.+.++..+.-|+| -++=|..+. ...+...|.++++.++++||+++.+
T Consensus 138 i~~~v~~~~~~g~I-iL~Hd~~~~--~~~t~~al~~ii~~l~~~Gy~fvtl 185 (216)
T 2c71_A 138 RAAAVINGVRDGTI-ILLHDVQPE--PHPTPEALDIIIPTLKSRGYEFVTL 185 (216)
T ss_dssp HHHHHHHHCCTTBE-EEEESCCSS--SCCHHHHHHHHHHHHHHTTCEECCH
T ss_pred HHHHHHhcCCCCcE-EEEECCCCC--hHHHHHHHHHHHHHHHHCCCEEEEh
Confidence 44555555666776 455555432 2357789999999999999998654
No 61
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=25.16 E-value=83 Score=28.63 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEEc--CCCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 157 IKEAVRLMDEAGYEIGNLDATLIL--QRPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~NiD~TIi~--q~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
++++.++|.+.||.- ...++|.. ..|.....-+.|++.|++ +||+ |+|+.
T Consensus 328 ~~kAk~LL~eaG~~~-g~~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~---v~i~~ 379 (509)
T 1uqw_A 328 PVKARELLKEAGYPN-GFSTTLWSSHNHSTAQKVLQFTQQQLAQ-VGIK---AQVTA 379 (509)
T ss_dssp HHHHHHHHHHHTCTT-CEEEEEEEECCSSSHHHHHHHHHHHHHH-TTEE---EEEEE
T ss_pred HHHHHHHHHHcCCCC-CceEEEEecCCCchHHHHHHHHHHHHHH-cCCE---EEEEe
Confidence 578999999999952 13445543 456555667778888877 4865 55554
No 62
>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic, chemotaxis binding proteins for active transport; 2.00A {Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
Probab=24.57 E-value=62 Score=29.27 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEEcC------CCCCchhHHHHHHHHHHHhCCC
Q 026508 157 IKEAVRLMDEAGYEIGNLDATLILQ------RPKLSPYKETIRTNLSELLGAD 203 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~NiD~TIi~q------~PKl~p~~~~mr~~La~lL~i~ 203 (237)
++++.++|.+.||.- ...+++... .|......+.|++.|++ +||+
T Consensus 328 ~~kAk~LL~eAG~~~-G~~l~l~~~~~~~~~~~~~~~~a~~i~~~l~~-iGI~ 378 (507)
T 1dpe_A 328 PEKAKALLKEAGLEK-GFSIDLWAMPVQRPYNPNARRMAEMIQADWAK-VGVQ 378 (507)
T ss_dssp HHHHHHHHHHTTCTT-CEEEEEECCSSCBTTBSCHHHHHHHHHHHHHT-TTEE
T ss_pred HHHHHHHHHHcCCCC-CcceEEEecccccCCCccHHHHHHHHHHHHHH-cCCE
Confidence 678999999999952 133455321 23233345556666666 5754
No 63
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1
Probab=24.50 E-value=83 Score=28.64 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCeEE-----------EEEEEEEc--CCCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 157 IKEAVRLMDEAGYEIG-----------NLDATLIL--QRPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~-----------NiD~TIi~--q~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
++++.++|.+.||.-. .+.+++.. ..|......+.|++.|++ +||+ |+|+.
T Consensus 332 ~~kAk~LL~eaG~~~~~~dG~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~---v~i~~ 395 (520)
T 1xoc_A 332 EKKAKQMLAEAGWKDTNGDGILDKDGKKFSFTLKTNQGNKVREDIAVVVQEQLKK-IGIE---VKTQI 395 (520)
T ss_dssp HHHHHHHHHHTTCBCSSSSSSCEETTEECEEEEEEETTCHHHHHHHHHHHHHHHT-TTCE---EEEEE
T ss_pred HHHHHHHHHHcCCCcCCCCceEccCCeEEEEEEEecCCChHHHHHHHHHHHHHHh-cCCE---EEEEe
Confidence 5789999999999732 24555544 233333445566677765 4765 55554
No 64
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type transport system, PERI component, transport protein; HET: GDS; 1.85A {Haemophilus parasuis}
Probab=24.44 E-value=61 Score=29.61 Aligned_cols=45 Identities=22% Similarity=0.475 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCeEEEEEEEEEcC------CCCCchhHHHHHHHHHHHhCCC
Q 026508 157 IKEAVRLMDEAGYEIGNLDATLILQ------RPKLSPYKETIRTNLSELLGAD 203 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~NiD~TIi~q------~PKl~p~~~~mr~~La~lL~i~ 203 (237)
++++.++|++.||.- ...+++... .|.....-+.|++.|++ +||+
T Consensus 330 ~~kAk~LL~eAG~~~-g~~l~l~~~~~~~~~~~~~~~~a~~iq~~l~~-iGI~ 380 (522)
T 3m8u_A 330 PEKAKQLLKEAGFEN-GFETDIWVQPVVRASNPNPRRMAELVQSDWEK-VGVK 380 (522)
T ss_dssp HHHHHHHHHHTTCTT-CEEEEEECCSSCBTTBSCHHHHHHHHHHHHHT-TTEE
T ss_pred HHHHHHHHHHcCCCC-CceEEEEEecccccCCchHHHHHHHHHHHHHH-cCce
Confidence 689999999999962 235566532 23333445566677765 4654
No 65
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A {Haemophilus parasuis 29755} SCOP: c.94.1.0
Probab=24.35 E-value=69 Score=29.26 Aligned_cols=96 Identities=25% Similarity=0.403 Sum_probs=49.2
Q ss_pred eeeCCCCCCCCCChhHH---HHHH-----HHHHHHHhcCCCCCcccCCCCCCccCCC-C-HHHHHHHHHHHHHhCCCeEE
Q 026508 103 INVPHERGCEAHSDGDV---LLHC-----VVDAILGALGLPDIGQIFPDSDPKWKGA-P-SSVFIKEAVRLMDEAGYEIG 172 (237)
Q Consensus 103 V~Ip~~~GL~gHSDGDV---LlHA-----I~DALLGA~glGDIG~~FPdtDp~~Kg~-d-S~~lL~~v~~ll~~~G~~I~ 172 (237)
+.+....+.. +|-.| |.|| |++.+++..+.. ...++|...+-|... . -..=++++.++|++.||.-+
T Consensus 274 l~~N~~~~p~--~d~~vRqAl~~aiDr~~i~~~~~~g~~~~-a~~~~p~~~~~~~~~~~~~~yd~~kAk~LL~eAG~~~G 350 (521)
T 3tpa_A 274 IGLNTTKPEL--NNVKVRQALHHATDKKAIVDAVYQGGGTV-ATNPFPDAVLGYNPHLPQYEFNLEKAKALLAEAGYPNG 350 (521)
T ss_dssp EEECTTSTTT--TSHHHHHHHHHTCCHHHHHHHHHTTSEEE-CSSSSCTTSTTCCTTCCCCCCCHHHHHHHHHHTTCTTC
T ss_pred EEecCCCCCC--CCHHHHHHHHHhhCHHHHHHHHhcCCcee-ccccCCCCccCcCCCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 3444444332 45444 5564 577777532221 123455443322210 0 01126899999999999621
Q ss_pred EEEEEEEcC------CCCCchhHHHHHHHHHHHhCCC
Q 026508 173 NLDATLILQ------RPKLSPYKETIRTNLSELLGAD 203 (237)
Q Consensus 173 NiD~TIi~q------~PKl~p~~~~mr~~La~lL~i~ 203 (237)
..++|... .|.-....+.|++.|++ +||+
T Consensus 351 -~~l~l~~~~~~~~~~~~~~~~a~~iq~~l~~-iGI~ 385 (521)
T 3tpa_A 351 -FETEIWVQPVVRPSNPNPRRTAEIIQADWAK-IGVK 385 (521)
T ss_dssp -EEEEEECCSSCBTTBSCHHHHHHHHHHHHHH-TTEE
T ss_pred -ceEEEEEecCCCcCCccHHHHHHHHHHHHHH-cCce
Confidence 34555432 23333455667777776 5754
No 66
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=24.07 E-value=58 Score=20.78 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHhCCCCCceeEEeEcCC
Q 026508 187 PYKETIRTNLSELLGADPTVVNLKAKTHE 215 (237)
Q Consensus 187 p~~~~mr~~La~lL~i~~~~VnIKAtT~E 215 (237)
.+..++.+.+.+.||+++++|.|-..-.+
T Consensus 18 ~l~~~i~~~l~~~lg~~~~~v~V~i~e~~ 46 (61)
T 2opa_A 18 NLVEKVTEAVKETTGASEEKIVVFIEEMR 46 (61)
T ss_dssp HHHHHHHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred HHHHHHHHHHHHHhCcCcCeEEEEEEEcC
Confidence 35667777888889999999998877554
No 67
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=23.58 E-value=59 Score=20.73 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHhCCCCCceeEEeEcCC
Q 026508 187 PYKETIRTNLSELLGADPTVVNLKAKTHE 215 (237)
Q Consensus 187 p~~~~mr~~La~lL~i~~~~VnIKAtT~E 215 (237)
.+..++-+.+.+.||+++++|.|-..-.+
T Consensus 18 ~l~~~i~~~l~~~lg~p~~~v~v~i~e~~ 46 (62)
T 1otf_A 18 TLIRQVSEAMANSLDAPLERVRVLITEMP 46 (62)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCEEEEEEEC
T ss_pred HHHHHHHHHHHHHhCcCcccEEEEEEEeC
Confidence 35677778888889999999988876554
No 68
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=23.22 E-value=81 Score=24.49 Aligned_cols=55 Identities=4% Similarity=-0.023 Sum_probs=41.6
Q ss_pred eEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccc
Q 026508 170 EIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRS 225 (237)
Q Consensus 170 ~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~eg 225 (237)
=..+|+..+-...-.......++-+.|++++|-|.+.|.|-.. ...|-|-|..+-
T Consensus 23 P~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe~~vmV~v~-~~~m~fgGs~dp 77 (135)
T 3t5s_A 23 PCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVSYCMAGVR-KADMSFGTSTDL 77 (135)
T ss_dssp CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCGGGCEEEEE-ECCCCBTTBCCS
T ss_pred ceEEEEecCccchhccchhHHHHHHHHHHhhCCchHHHHhhhh-hhhcccCcccce
Confidence 3456665553221123678888999999999999999999999 999999998654
No 69
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=23.07 E-value=77 Score=23.65 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeE--E------------EEEEEEEcCCCCCchhHHHHHHHH
Q 026508 149 KGAPSSVFIKEAVRLMDEAGYEI--G------------NLDATLILQRPKLSPYKETIRTNL 196 (237)
Q Consensus 149 Kg~dS~~lL~~v~~ll~~~G~~I--~------------NiD~TIi~q~PKl~p~~~~mr~~L 196 (237)
-|++|..+.+++-+.++++|+.+ . +.|+.+. -|.+....+++++..
T Consensus 12 ~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~--~pqv~~~~~~~~~~~ 71 (106)
T 1e2b_A 12 AGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLL--GPQIAYMLPEIQRLL 71 (106)
T ss_dssp SSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEE--CTTSGGGHHHHHHHS
T ss_pred CchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEE--ccchhhhHHHHHHHh
Confidence 36777889999999999999864 2 2243333 467777777777644
No 70
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=22.86 E-value=37 Score=26.02 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHhCCCCCceeEEeE
Q 026508 186 SPYKETIRTNLSELLGADPTVVNLKAK 212 (237)
Q Consensus 186 ~p~~~~mr~~La~lL~i~~~~VnIKAt 212 (237)
.|-+.++|+.||+.++.+++.|.|..=
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~ 56 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNN 56 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCC
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEee
Confidence 578999999999999999999988653
No 71
>1vr5_A Oligopeptide ABC transporter, periplasmic oligope binding protein; TM1223, periplasmic oligopepti binding, structural genomics; HET: EPE; 1.73A {Thermotoga maritima} SCOP: c.94.1.1
Probab=21.59 E-value=62 Score=29.85 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCeEE------------EEEEEEEcC--CCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 157 IKEAVRLMDEAGYEIG------------NLDATLILQ--RPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 157 L~~v~~ll~~~G~~I~------------NiD~TIi~q--~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
++++.++|.+.||.-. .+.++|... .+......+.|++.|++ +||+ |+|+.
T Consensus 338 ~~kAk~LL~eAG~~~~~~dG~~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~---v~i~~ 402 (547)
T 1vr5_A 338 PEMAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWMVSIQSIAEDLVK-VGIN---VEPKY 402 (547)
T ss_dssp HHHHHHHHHHTTCBCCSSSSSCBCTTSCCCCEEEECCTTCHHHHHHHHHHHHHHHT-TTCC---EEEEC
T ss_pred HHHHHHHHHHCCCeEECCCCeEECCCCeEEEEEEEecCCChhHHHHHHHHHHHHHh-cCce---EEEee
Confidence 5789999999999711 134666542 22223345566777766 4775 55543
No 72
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=21.07 E-value=87 Score=20.64 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHhCCCCCceeEEeEcCC
Q 026508 188 YKETIRTNLSELLGADPTVVNLKAKTHE 215 (237)
Q Consensus 188 ~~~~mr~~La~lL~i~~~~VnIKAtT~E 215 (237)
...++-+.+++.||++++.|.|-..-.+
T Consensus 18 L~~~it~~~~~~lg~~~~~v~V~i~E~~ 45 (62)
T 3m20_A 18 FVERLTSVAAEIYGMDRSAITILIHEPP 45 (62)
T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEECCC
T ss_pred HHHHHHHHHHHHhCcCcceEEEEEEEeC
Confidence 4556667777889999999998876553
No 73
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=20.48 E-value=73 Score=24.78 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=26.0
Q ss_pred cCCCCCchhHHHHHHHHHHHhCCCCCceeEEe
Q 026508 180 LQRPKLSPYKETIRTNLSELLGADPTVVNLKA 211 (237)
Q Consensus 180 ~q~PKl~p~~~~mr~~La~lL~i~~~~VnIKA 211 (237)
..-|.=+.=-+++.+.||+.||++.++|.|..
T Consensus 43 ~ApP~dGkAN~ali~~LAk~l~V~ks~V~Iv~ 74 (108)
T 1n91_A 43 TAPPVDGQANSHLVKFLGKQFRVAKSQVVIEK 74 (108)
T ss_dssp CCCSSHHHHHHHHHHHHHHHTCCCTTTEEESS
T ss_pred ecCCCCChHHHHHHHHHHHHhCCccceEEEEe
Confidence 34454456678899999999999999999976
No 74
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*
Probab=20.47 E-value=80 Score=27.95 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHHHHhCCCeEEEEEEEEEcCCCCCchhHHHHHHHHHHHhCCCCCcee
Q 026508 160 AVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 208 (237)
Q Consensus 160 v~~ll~~~G~~I~NiD~TIi~q~PKl~p~~~~mr~~La~lL~i~~~~Vn 208 (237)
+.+.+++.|+.+..||..|.-|-- ..|.+.+++.|+++.+++-
T Consensus 260 i~~~L~~~gl~~~did~~v~Hq~n------~~i~~~~~~~lgl~~ek~~ 302 (359)
T 3h78_A 260 AGEMLAAHELTLDDIDHVICHQPN------LRILDAVQEQLGIPQHKFA 302 (359)
T ss_dssp HHHHHHHTTCCGGGCSEEEECCSC------HHHHHHHHHHHTCCGGGBC
T ss_pred HHHHHHHcCCCHHHCCEEEECCCC------HHHHHHHHHHhCcCHHHhh
Confidence 446778899999999987765542 3466788899999998864
No 75
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=20.13 E-value=76 Score=24.57 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHhCCCCCceeEEeEcCCCCCCcccccce
Q 026508 187 PYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGENRSI 226 (237)
Q Consensus 187 p~~~~mr~~La~lL~i~~~~VnIKAtT~E~LG~~Gr~egI 226 (237)
....++.+.+|+++|-|.+.|.|-......|-|-|..+-.
T Consensus 39 ~l~~~ls~~la~~lgKPe~~vmV~~~~~~~m~fgGs~dP~ 78 (133)
T 3fwu_A 39 NLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPV 78 (133)
T ss_dssp HHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSC
T ss_pred HHHHHHHHHHHHHHCcCccEEEEEEECCceEEECCcCCCE
Confidence 3566888999999999999999999999999998877643
Done!