BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026510
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F67|A Chain A, Crystal Structure Of Putative Dienelactone Hydrolase From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 241
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 85/221 (38%), Gaps = 43/221 (19%)
Query: 43 LLISDIFGYEAPNLRKLADKVAAAGFYVAVPDFF--HGDPHVDGGRSLQEWINDHGVDKG 100
+++ +IFG ++R L ++A G+ P+ + GDP+ H +
Sbjct: 36 IVVQEIFGVHE-HIRDLCRRLAQEGYLAIAPELYFRQGDPN-----------EYHDIPTL 83
Query: 101 FEE---AKPVIQALKCKGITATGA------------VGFCWGAKVA-VQLAKREFIQAAV 144
F+E P Q L A+ A GFCWG ++ + A ++AAV
Sbjct: 84 FKELVSKVPDAQVLADLDHVASWAARHGGDAHRLLITGFCWGGRITWLYAAHNPQLKAAV 143
Query: 145 LLHPSFV----------TVDDIKGVEVPVSVLGAEIDPVSPPALVKEFEEALTAKSEVDS 194
+ V VD + PV L D P V+ +AL A +
Sbjct: 144 AWYGKLVGEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETXRQALRAANATAE 203
Query: 195 FVKIFPKVAHGWSVRYNVEDESAVKAAEEAHQNLLEWLAKH 235
V ++P+ H ++ Y ++A++ Q L W A++
Sbjct: 204 IV-VYPEADHAFNADYRASYHE--ESAKDGWQRXLAWFAQY 241
>pdb|2R8B|A Chain A, The Crystal Structure Of The Protein Atu2452 Of Unknown
Function From Agrobacterium Tumefaciens Str. C58
pdb|2R8B|B Chain B, The Crystal Structure Of The Protein Atu2452 Of Unknown
Function From Agrobacterium Tumefaciens Str. C58
Length = 251
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 121 AVGFCWGAKV--AVQLAKREFIQAAVLLHPSFVTVDDIKGVEVPVSVL--GAEIDPVSPP 176
+GF GA + V + + E AAVL HP I + VL E DP+ P
Sbjct: 145 GLGFSNGANILANVLIEQPELFDAAVLXHPLIPFEPKISPAKPTRRVLITAGERDPICPV 204
Query: 177 ALVKEFEEALTAK 189
L K EE+L A+
Sbjct: 205 QLTKALEESLKAQ 217
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 136 KREFIQAAVLLHPSFVTVDDIKGVEVPVSVLGAEIDPVSPPALVKEFEEALTAKSEVDSF 195
+RE AA L HP+ V V D E P L P +V E+ + +T + V +
Sbjct: 60 RREAQNAAALNHPAIVAVYDTGEAETPAGPL---------PYIVMEYVDGVTLRDIVHTE 110
Query: 196 VKIFPKVA 203
+ PK A
Sbjct: 111 GPMTPKRA 118
>pdb|3AYX|B Chain B, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|D Chain D, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|B Chain B, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|D Chain D, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|B Chain B, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|D Chain D, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 283
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 72 VPDFFHGDPHVDGGRSLQEWINDHGVDKGFEEAKPVIQALKCKGITATGAV 122
+ D + PH D G+ ++EW +D G KG+ + + CKG T A
Sbjct: 195 IHDKCYRRPHFDAGQFVEEW-DDEGARKGY-----CLYKVGCKGPTTYNAC 239
>pdb|3RGW|S Chain S, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 339
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 68 FYVA-VPDFFHGDPHVDGGRSLQEWINDHGVDKGFEEAKPVIQALKCKGITATGAV 122
FY + D + PH D G+ ++EW +D KGF + + CKG T A
Sbjct: 181 FYSQRIHDKCYRRPHFDAGQFVEEW-DDESARKGF-----CLYKMGCKGPTTYNAC 230
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 136 KREFIQAAVLLHPSFVTVDDIKGVEVPVSVLGAEIDPVSPPALVKEFEEALTAKSEVDSF 195
+RE AA L HP+ V V D E P L P +V E+ + +T + V +
Sbjct: 60 RREAQNAAALNHPAIVAVYDTGEAETPAGPL---------PYIVMEYVDGVTLRDIVHTE 110
Query: 196 VKIFPKVA 203
+ PK A
Sbjct: 111 GPMTPKRA 118
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 136 KREFIQAAVLLHPSFVTVDDIKGVEVPVSVLGAEIDPVSPPALVKEFEEALTAKSEVDSF 195
+RE AA L HP+ V V D E P L P +V E+ + +T + V +
Sbjct: 77 RREAQNAAALNHPAIVAVYDTGEAETPAGPL---------PYIVMEYVDGVTLRDIVHTE 127
Query: 196 VKIFPKVA 203
+ PK A
Sbjct: 128 GPMTPKRA 135
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 136 KREFIQAAVLLHPSFVTVDDIKGVEVPVSVLGAEIDPVSPPALVKEFEEALTAKSEVDSF 195
+RE AA L HP+ V V D E P L P +V E+ + +T + V +
Sbjct: 60 RREAQNAAALNHPAIVAVYDTGEAETPAGPL---------PYIVMEYVDGVTLRDIVHTE 110
Query: 196 VKIFPKVA 203
+ PK A
Sbjct: 111 GPMTPKRA 118
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 136 KREFIQAAVLLHPSFVTVDDIKGVEVPVSVLGAEIDPVSPPALVKEFEEALTAKSEVDSF 195
+RE AA L HP+ V V D E P L P +V E+ + +T + V +
Sbjct: 60 RREAQNAAALNHPAIVAVYDTGEAETPAGPL---------PYIVMEYVDGVTLRDIVHTE 110
Query: 196 VKIFPKVA 203
+ PK A
Sbjct: 111 GPMTPKRA 118
>pdb|3OWO|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OX4|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
Length = 383
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 15/198 (7%)
Query: 42 ALLISDIFGYEAPNLRKLADKVAAAGFYVAVPDFFHGDPHV----DGGRSLQEWINDHGV 97
AL++SD F ++ ++++AD + A G AV D +P V +G + L++ +D +
Sbjct: 34 ALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVI 93
Query: 98 DKGF---EEAKPVIQALKCKGITATGAVGFCWGAKVAVQLAKREFIQAAVLLHPSF-VTV 153
G + I + G G K A+ L F +
Sbjct: 94 SLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTASEMTRFCIIT 153
Query: 154 DDIKGVEVPVSVLGAEIDP---VSPPALVKEFEEALTAKSEVDSFVKIFPKVAHGWSVRY 210
D+++ V ++++ + P V+ P L+ + LTA + +D+ F A+ +
Sbjct: 154 DEVR--HVKMAIVDRHVTPMVSVNDPLLMVGMPKGLTAATGMDALTHAFE--AYSSTAAT 209
Query: 211 NVEDESAVKAAEEAHQNL 228
+ D A+KAA +NL
Sbjct: 210 PITDACALKAASMIAKNL 227
>pdb|1QZQ|A Chain A, Human Tyrosyl Dna Phosphodiesterase
pdb|1QZQ|B Chain B, Human Tyrosyl Dna Phosphodiesterase
Length = 483
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 30 TYVTGSPDSKLAALLISDIFGYEAPNLRKLAD-----KVAAAGFYV--AVPDFFHGDPHV 82
T+ +G + A LIS + Y AP+L++ D ++ Y+ + P F G
Sbjct: 184 THKSGESPTHFKADLISYLMAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQGSQKD 243
Query: 83 DGGR-SLQEWINDHGVDKGFEEAKPVIQALKCKG 115
+ G L++ + DH E+ PV+ G
Sbjct: 244 NWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVG 277
>pdb|4IFA|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of An
Extracellular Protein Containing A Scp Domain From
Bacillus Anthracis Str. Ames
Length = 339
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 46 SDIFGYEAPNLRKLADKV--AAAGFYVAVPDFFHGDPHVDGGRSLQEWINDHGVDKGF 101
++ F +++P L L D++ GF +A + H DG +LQ W+N G K
Sbjct: 260 NNYFSHDSPTLGTLGDRLQRGKVGFQLAGENI--AAQHSDGVAALQGWLNSEGHRKNL 315
>pdb|1JY1|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
(Tdp1)
Length = 464
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 30 TYVTGSPDSKLAALLISDIFGYEAPNLRKLAD-----KVAAAGFYV--AVPDFFHGDPHV 82
T+ +G + A LIS + Y AP+L++ D ++ Y+ + P F G
Sbjct: 165 THKSGESPTHFKANLISYLTAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQGSQKD 224
Query: 83 DGGR-SLQEWINDHGVDKGFEEAKPVIQALKCKG 115
+ G L++ + DH E+ PV+ G
Sbjct: 225 NWGHFRLKKLLKDHASSXPNAESWPVVGQFSSVG 258
>pdb|1MU7|A Chain A, Crystal Structure Of A Human Tyrosyl-dna Phosphodiesterase
(tdp1)- Tungstate Complex
pdb|1MU7|B Chain B, Crystal Structure Of A Human Tyrosyl-dna Phosphodiesterase
(tdp1)- Tungstate Complex
pdb|1MU9|A Chain A, Crystal Structure Of A Human Tyrosyl-Dna Phosphodiesterase
(Tdp1)- Vanadate Complex
pdb|1MU9|B Chain B, Crystal Structure Of A Human Tyrosyl-Dna Phosphodiesterase
(Tdp1)- Vanadate Complex
pdb|1NOP|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
(Tdp1) In Complex With Vanadate, Dna And A Human
Topoisomerase I-Derived Peptide
pdb|1NOP|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
(Tdp1) In Complex With Vanadate, Dna And A Human
Topoisomerase I-Derived Peptide
pdb|1RFF|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octapeptide Klnyydpr, And
Tetranucleotide Agtt.
pdb|1RFF|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octapeptide Klnyydpr, And
Tetranucleotide Agtt.
pdb|1RFI|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Pentapeptide Klnyk, And
Tetranucleotide Agtc
pdb|1RFI|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Pentapeptide Klnyk, And
Tetranucleotide Agtc
pdb|1RG1|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtt
pdb|1RG1|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtt
pdb|1RG2|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agta
pdb|1RG2|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agta
pdb|1RGT|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtc
pdb|1RGT|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtc
pdb|1RGU|A Chain A, The Crystal Structure Of Human Tyrosyl-dna
Phosphodiesterase Complexed With Vanadate, Octopamine,
And Tetranucleotide Agtg
pdb|1RGU|B Chain B, The Crystal Structure Of Human Tyrosyl-dna
Phosphodiesterase Complexed With Vanadate, Octopamine,
And Tetranucleotide Agtg
pdb|1RH0|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine And Trinucleotide
Gtt
pdb|1RH0|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine And Trinucleotide
Gtt
Length = 485
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 30 TYVTGSPDSKLAALLISDIFGYEAPNLRKLAD-----KVAAAGFYV--AVPDFFHGDPHV 82
T+ +G + A LIS + Y AP+L++ D ++ Y+ + P F G
Sbjct: 186 THKSGESPTHFKANLISYLTAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQGSQKD 245
Query: 83 DGGR-SLQEWINDHGVDKGFEEAKPVIQALKCKG 115
+ G L++ + DH E+ PV+ G
Sbjct: 246 NWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVG 279
>pdb|4IM7|A Chain A, Crystal Structure Of Fructuronate Reductase (ydfi) From E.
Coli Cft073 (efi Target Efi-506389) Complexed With Nadh
And D-mannonate
Length = 506
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 29 DTYVTGSPD-SKLAALLISDIFGYEAPNLRKL 59
D +V G P+ K A L+SD+ YE LR L
Sbjct: 281 DNFVAGRPEWEKAGAELVSDVLPYEEMKLRML 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,504,725
Number of Sequences: 62578
Number of extensions: 309856
Number of successful extensions: 768
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 20
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)