BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026512
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QV0|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Mam33
Length = 227
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 178 YVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYI 234
Y GP F LD+ELQ+SL +LE RG+NE+L +F+ Y + K+ E++ W++ +K +
Sbjct: 170 YHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFF 226
>pdb|3JV1|A Chain A, Crystal Structure Of The Trypanosoma Brucei P22 Protein
Length = 182
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 25/181 (13%)
Query: 66 EIQYELERSS-PKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPVSK 124
E++ E +R+ P++P +T+D +PG + + G +E+I ++ T D S
Sbjct: 14 ELEDERQRAGLPEKPEIP-EGWTIDRKPGVTHFTMRKSHG-DEEIILQLTGEDRSNE--- 68
Query: 125 AGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADP------- 177
E + L+VN K L S I + R + KL+ D
Sbjct: 69 ----EITRTLDVLVVNGGK----ALVFGMSVEDGEFVINNVCFRHDGKLALDTSAEAQFQ 120
Query: 178 ----YVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSY 233
Y+GP+ +L+D L DS +L RG+N+ L F+ ++ ++ ++ W+ ++ +
Sbjct: 121 KSQLYMGPDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSEQADYEEWLSSINKF 180
Query: 234 I 234
+
Sbjct: 181 V 181
>pdb|1YQF|A Chain A, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|B Chain B, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|C Chain C, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|D Chain D, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|E Chain E, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|F Chain F, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
Length = 203
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 24/182 (13%)
Query: 64 RNEIQYELERSS-PKQPITKFNSFTVDDRPGEQWVRLTRKFGENEDIKIEATMFDGSIPV 122
R E++ E+ RS P+QP T + V +PG LT+ F E ED+ + + S
Sbjct: 32 RRELEEEMGRSDKPEQP-TPPAGWQVVRKPGTCTFDLTKSF-EGEDLVVRYSTNQDS--- 86
Query: 123 SKAGVGEDVKLHSTLIVNISKGDEEVLEMMCSAWPDSIEITKLFVRGNDKLSADP----- 177
D + V I++ + + ++ S + + + L+ D
Sbjct: 87 -------DKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAE 139
Query: 178 ------YVGPEFKELDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVK 231
Y GP ELD +L + + +LE+RG++E+L F+ Y ++ ++ W+ +
Sbjct: 140 AKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMN 199
Query: 232 SY 233
+
Sbjct: 200 KF 201
>pdb|3TB6|A Chain A, Structure Of The Effector-binding Domain Of Arabinose
Repressor Arar From Bacillus Subtilis
pdb|3TB6|B Chain B, Structure Of The Effector-binding Domain Of Arabinose
Repressor Arar From Bacillus Subtilis
Length = 298
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 17 SMLLNSTKQNPSLFKSNLRNPVSQISKRNYISEMRKSAFE----GNILRLLRNEIQYELE 72
SMLL ST NP + L N +SQ I E KSA + G L L +N I + +
Sbjct: 47 SMLLTSTNNNPDNERRGLENLLSQ-HIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMI 105
Query: 73 RSSPKQPITKFNSFTVDDRPG 93
+S + SFT+DD G
Sbjct: 106 NASYAELAAP--SFTLDDVKG 124
>pdb|3RPX|A Chain A, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
pdb|3RPX|B Chain B, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
pdb|3RPX|C Chain C, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
Length = 194
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 186 LDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK 237
LD L D L +FL +RG++ L E + E++ +++ +KS+++++
Sbjct: 136 LDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ 187
>pdb|1P32|A Chain A, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
pdb|1P32|B Chain B, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
pdb|1P32|C Chain C, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
Length = 209
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 186 LDDELQDSLYEFLEERGINEQLTAFLHEYLKNKDKTEFVRWMQAVKSYIENK 237
LD L D L +FL +RG++ L E + E++ +++ +KS+++++
Sbjct: 158 LDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,860,566
Number of Sequences: 62578
Number of extensions: 287787
Number of successful extensions: 656
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 24
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)