BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026513
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q81ZZ9|PRMA_NITEU Ribosomal protein L11 methyltransferase OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=prmA PE=3 SV=1
Length = 313
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 129/226 (57%), Gaps = 17/226 (7%)
Query: 6 NWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLR 65
+W++ TQ F P+ ++ LW+VP W PPD A ++ L+PGLAFG+G H TT+LCL L
Sbjct: 100 DWVRLTQAQFEPIRISSRLWVVPSWHEPPDPAAISLRLDPGLAFGTGSHPTTRLCLTWLD 159
Query: 66 RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125
+ ++ G+ LDYG GSGIL IAA+KFGA G DIDP AI ++ NA N P ++
Sbjct: 160 QFLQPGDSVLDYGCGSGILAIAALKFGADRVTGMDIDPNAITASLDNARNNFCDPDRL-- 217
Query: 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA 185
FT + +VED R ++ +V+ANIL NPL+ LA ++
Sbjct: 218 ------LFTTVLPP----LVED-----DRASAEWAPVTIVVANILANPLIMLAPVLMKAL 262
Query: 186 KPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+PG + +SGIL Q ++ YSE+ + + ++ W ++G+K
Sbjct: 263 QPGGRIVLSGILETQADEVLQVYSEWFDMHIAAKEQGWVLLAGQKS 308
>sp|A4SJL7|PRMA_AERS4 Ribosomal protein L11 methyltransferase OS=Aeromonas salmonicida
(strain A449) GN=prmA PE=3 SV=1
Length = 292
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 130/228 (57%), Gaps = 26/228 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ FHP++ + LWI P W P+ A N++L+PGLAFG+G H TT LCL
Sbjct: 89 EDKDWVREWMDHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQ 148
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGILGIAA+K GAA +G DIDPQAI+++H NA N + +
Sbjct: 149 WLDGLDLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASHDNAERNGVA-GQ 207
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L+L D+ Q + DVV+ANIL PL +LA I
Sbjct: 208 IELYLPADQ-------------------------PQDVEADVVVANILAGPLRELAPLIA 242
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKK 230
+ KPG+++ +SG+L Q P + Y ++ + + ++W +SG+K
Sbjct: 243 GHGKPGSLMALSGVLESQAPELETIYGQWFDMDPTAVKEEWCRLSGRK 290
>sp|Q0AEV2|PRMA_NITEC Ribosomal protein L11 methyltransferase OS=Nitrosomonas eutropha
(strain C91) GN=prmA PE=3 SV=1
Length = 313
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 17/226 (7%)
Query: 6 NWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLR 65
+W++ TQ F P++++ LW+VP W PD A N+ L+PGLAFG+G H TT+LCL L
Sbjct: 100 DWVRLTQAQFEPIKISSRLWVVPSWHDLPDPAAINLRLDPGLAFGTGSHPTTQLCLGWLD 159
Query: 66 RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125
+ +K G+ LDYG GSGIL IAA+K GA +G DIDP AI ++ +NA N K+
Sbjct: 160 KFLKPGDSVLDYGCGSGILAIAALKLGADRVMGVDIDPNAITASLENARNNLCDLDKL-- 217
Query: 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA 185
+FT +++ G D H + VV+ANIL NPL+ LA ++S
Sbjct: 218 ------SFTTALSFSGGGDPADTRQHPVF---------VVVANILANPLIMLAPVLMSAL 262
Query: 186 KPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+PG + +SGIL Q ++ YSE+ + + ++ W ++G+K
Sbjct: 263 QPGGRIVLSGILETQADEVLQIYSEWFDMQIAAKDQGWVLLAGRKS 308
>sp|Q3IIC0|PRMA_PSEHT Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=prmA PE=3 SV=1
Length = 293
Score = 160 bits (405), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 130/230 (56%), Gaps = 29/230 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ K LWI P W PD A N++L+PGLAFG+G HATT LCL
Sbjct: 91 EDKDWEREWMDNFHPIQFGKRLWICPSWRDIPDPDAVNVLLDPGLAFGTGTHATTALCLK 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L G+ +D+G GSGILGIAAIK GA +G DIDPQA++++ NA N + K
Sbjct: 151 WLESQDLTGKTVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALEASLDNANRNGVA-DK 209
Query: 123 MKLHLVPDR-TFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHI 181
++++L ++ F+A D+V+ANIL PL +L I
Sbjct: 210 LEVYLPENQPEFSA---------------------------DIVVANILAQPLRELHSVI 242
Query: 182 VSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+ KPG + +SGIL+EQ + + Y+ F+E ++ DWT VSG KK
Sbjct: 243 LGLLKPGGKIAMSGILTEQAQSVADVYAPFIELDDIAIEGDWTRVSGTKK 292
>sp|P60091|PRMA_CHRVO Ribosomal protein L11 methyltransferase OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=prmA PE=3 SV=1
Length = 298
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 125/229 (54%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E+ +W++ TQ F P+ ++ LWI P W P A N+ L+PGLAFG+G H TT+LCL
Sbjct: 96 EEQDWVRLTQSQFEPIRISDRLWITPTWHEAPAPNAVNLQLDPGLAFGTGSHPTTRLCLQ 155
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + ++G E LDYG GSGIL IAA+K GAA +VG DID QA++++ NA N +
Sbjct: 156 WLDKQLQGNESVLDYGCGSGILAIAALKLGAASAVGIDIDQQAVRASQDNAEQNGVKAD- 214
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+P+ A +YDVV+ANIL NPL L D +
Sbjct: 215 ---FFLPNANPAA-------------------------QYDVVLANILANPLRMLGDLLA 246
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S+ K G + +SGIL+EQ + YS++ E + WT ++G ++
Sbjct: 247 SHVKTGGRIVLSGILAEQADELSAIYSQWFEMDPPVFDEGWTRLTGTRR 295
>sp|C1DCV9|PRMA_LARHH Ribosomal protein L11 methyltransferase OS=Laribacter hongkongensis
(strain HLHK9) GN=prmA PE=3 SV=1
Length = 297
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 124/229 (54%), Gaps = 28/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W++ TQ F P+ ++ LWI P W PD A N+ L+PGLAFG+G H TT+LCL
Sbjct: 96 ESQDWVRLTQSQFDPIRISGRLWITPTWHDAPDANAINLALDPGLAFGTGSHPTTRLCLQ 155
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L I GGE LDYG GSGIL IAAIK GA G DIDPQA++++ NA N +
Sbjct: 156 WLDANICGGESVLDYGCGSGILAIAAIKLGATDVTGIDIDPQAVQASRDNAVQNQV---- 211
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
TA+ G+ + L + ++DV++ANIL NPL L D +
Sbjct: 212 -----------TAAF-----GLPDTLEDGR--------QFDVLVANILANPLRMLGDLLA 247
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S+ + G + +SGIL EQ + YS + E + WT +SG ++
Sbjct: 248 SHVRAGGRIVLSGILEEQAQELSELYSAWFEMDPPVFDEGWTRLSGVRR 296
>sp|Q9JXW2|PRMA_NEIMB Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis
serogroup B (strain MC58) GN=prmA PE=3 SV=1
Length = 295
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 124/229 (54%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W++ TQ F P+ ++ LWI P W P+ A N+ L+PGLAFG+G H TT+LCL
Sbjct: 96 EDQDWVRLTQSQFDPIRISDRLWITPSWHEVPEGSAVNLRLDPGLAFGTGSHPTTRLCLK 155
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L +K GE LDYG GSGIL IAA+K GA +VG DID QA+++ NAA NN+ +
Sbjct: 156 WLDTQLKNGESVLDYGCGSGILTIAALKLGAGFAVGVDIDEQAVRAGKDNAAQNNVDAQ- 214
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+PD G+ Q ++DVV+ANIL NPL L + +
Sbjct: 215 ---FFLPD------------------------GLPQG-QFDVVVANILANPLRMLGEMLA 246
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+ K G + +SG+L EQ + YS++ + + W +SG K+
Sbjct: 247 ARTKQGGRIVLSGLLDEQAEELGGIYSQWFDLDPAETEEGWARLSGVKR 295
>sp|Q9JW08|PRMA_NEIMA Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=prmA PE=3
SV=1
Length = 295
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W++ TQ F P+ +++ LWI P W P+ A N+ L+PGLAFG+G H TT+LCL
Sbjct: 96 EDQDWVRLTQAQFDPIRISERLWITPSWHEAPEDTAVNLRLDPGLAFGTGSHPTTRLCLK 155
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L +K GE LDYG GSGIL IAA+K GA +VG DID QA+++ NA NN+ +
Sbjct: 156 WLDTQLKNGESVLDYGCGSGILTIAALKLGAGFAVGVDIDEQAVRAGKDNAEQNNVDAQ- 214
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+PD G+ Q ++DVV+ANIL NPL L + +
Sbjct: 215 ---FFLPD------------------------GLPQG-QFDVVVANILANPLRMLGEMLA 246
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+ K G + +SG+L EQ + YS++ + + W +SG K+
Sbjct: 247 ARTKQGGRIVLSGLLDEQAEELGGIYSQWFDLDPAETEEGWARLSGTKR 295
>sp|A0KNJ1|PRMA_AERHH Ribosomal protein L11 methyltransferase OS=Aeromonas hydrophila
subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=prmA
PE=3 SV=1
Length = 292
Score = 157 bits (398), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 128/228 (56%), Gaps = 26/228 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ FHP++ + LWI P W P+ A N++L+PGLAFG+G H TT LCL
Sbjct: 89 EDKDWVREWMDHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQ 148
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGILGIAA+K GAA +G DIDPQAI+++ NA N + +
Sbjct: 149 WLDGLDLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRDNAERNGVA-DQ 207
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L+L D+ Q + DVV+ANIL PL +LA I
Sbjct: 208 IELYLPADQ-------------------------PQDVEADVVVANILAGPLRELAPLIA 242
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKK 230
+ K G+++ +SG+L Q P + Y ++ E + ++W +SG+K
Sbjct: 243 GHGKAGSLMALSGVLESQAPELETIYGQWFEMDPTAVKEEWCRLSGRK 290
>sp|A1KS36|PRMA_NEIMF Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
GN=prmA PE=3 SV=1
Length = 295
Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 123/229 (53%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W++ TQ F P+ ++ LWI P W P+ A N+ L+PGLAFG+G H TT+LCL
Sbjct: 96 EDQDWVRLTQSQFDPIRISDRLWITPSWHEAPEGTAVNLRLDPGLAFGTGSHPTTRLCLK 155
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L +K GE LDYG GSGIL IAA+K GA +VG DID QA+++ NA NN+ +
Sbjct: 156 WLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRAGKDNAEQNNVDAQ- 214
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+PD G+ Q ++DVV+ANIL NPL L + +
Sbjct: 215 ---FFLPD------------------------GLPQG-QFDVVVANILANPLRMLGEMLA 246
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+ K G + +SG+L EQ + YS++ + + W +SG K+
Sbjct: 247 ARTKQGGRIVLSGLLDEQAEELGGIYSQWFDLDPAETEEGWARLSGTKR 295
>sp|Q7VPN5|PRMA_HAEDU Ribosomal protein L11 methyltransferase OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=prmA PE=3 SV=1
Length = 293
Score = 157 bits (397), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 128/229 (55%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ + LWI P W PD +A NI+L+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWEREWMDNFHPMQFGQRLWICPSWREVPDEKAVNIMLDPGLAFGTGTHPTTALCLQ 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL I+A+K GA ++G DIDPQAI ++ NAA N + +
Sbjct: 151 WLDGLDLTGKTVIDFGCGSGILAISALKLGAKQAIGIDIDPQAILASQNNAAANGVA-DR 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L L D+ Q + DVV+ANIL PL +LA +I+
Sbjct: 210 LQLFLAKDQ-------------------------PQALQADVVVANILAGPLKELAPNIM 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+ KP +G+SGIL+ Q + Y+ + V E ++W ++G K+
Sbjct: 245 TLVKPQGYLGLSGILATQAQSVCQAYAAVFKLDPVVEKEEWCRITGIKQ 293
>sp|Q5FAH7|PRMA_NEIG1 Ribosomal protein L11 methyltransferase OS=Neisseria gonorrhoeae
(strain ATCC 700825 / FA 1090) GN=prmA PE=3 SV=1
Length = 295
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 124/230 (53%), Gaps = 31/230 (13%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W++ TQ F P+ ++ LWI P W P+ A N+ L+PGLAFG+G H TT+LCL
Sbjct: 96 ENQDWVRLTQSQFDPIRISDRLWITPSWHEAPEGCAVNLRLDPGLAFGTGSHPTTRLCLK 155
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L +K GE LDYG GSGIL IAA+K GA +VG DID QA++S NA NN+ +
Sbjct: 156 WLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRSGRDNAEQNNVDAQ- 214
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+PD ++DVV+ANIL NPL L + +
Sbjct: 215 ---FFLPDSLPQG-------------------------QFDVVVANILANPLRMLGEMLA 246
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDD-WTCVSGKKK 231
+ K G + +SG+L EQ + YS++ D+ +E D+ W +SG K+
Sbjct: 247 ARTKQGGRIVLSGLLDEQAEELGGIYSQWF-DLDPAETDEGWARLSGVKR 295
>sp|Q6DAJ5|PRMA_ERWCT Ribosomal protein L11 methyltransferase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=prmA PE=3 SV=1
Length = 295
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 130/228 (57%), Gaps = 26/228 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ K LWI P W PD A N++L+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWEREWMDNFHPMQFGKRLWICPSWREIPDPSAVNVMLDPGLAFGTGTHPTTSLCLQ 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAA+K GAA ++G DIDPQAI+++ NA N + ++
Sbjct: 151 WLDGLDLEGKTIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ER 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L+L D+ DLS+ DVV+ANIL PL +LA I
Sbjct: 210 LELYLPKDQP-------------ADLSA------------DVVVANILAGPLRELAPLIS 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKK 230
K G +G+SG+LS Q + Y++ V+E ++W ++G++
Sbjct: 245 DLPKAGGHLGLSGVLSTQADGVAEAYADKFTLDPVAEREEWCRITGQR 292
>sp|B0BRD1|PRMA_ACTPJ Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=prmA PE=3
SV=1
Length = 293
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 125/229 (54%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ K LWI P W PD A N++L+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWEREWMDNFHPMQFGKRLWICPSWREVPDSNAVNVMLDPGLAFGTGTHPTTALCLQ 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAA+K GA ++G DIDPQAI ++ NA N + +
Sbjct: 151 WLDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DR 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L L D+ Q + DVV+ANIL PL +LA +I+
Sbjct: 210 LQLFLAKDQ-------------------------PQDLQADVVVANILAGPLKELAPNII 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+ KP +G+SGIL+ Q + Y+ V E ++W ++G KK
Sbjct: 245 TLVKPQGDLGLSGILATQAESVCEAYAPDFNLDSVVEKEEWCRITGVKK 293
>sp|B4E5V2|PRMA_BURCJ Ribosomal protein L11 methyltransferase OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=prmA PE=3 SV=1
Length = 300
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 127/229 (55%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E+ +W++ TQ F P+ + + +W+VP W PD A + L+PGLAFG+G H TT+LC+
Sbjct: 98 EEQDWVRLTQSQFEPIPIGERIWVVPSWHDAPDPDALVLELDPGLAFGTGSHPTTRLCME 157
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + +K G+ LDYG GSGIL I A K GA +G DIDPQA++SA QN+ N +
Sbjct: 158 WLEQSVKPGQSVLDYGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERN----RA 213
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ +PD DG ++D+V+ANIL NPL +A +
Sbjct: 214 EVTYGLPDAC--------PDG-----------------EFDIVVANILSNPLKLMASMLA 248
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KPG + +SG+L+ Q + Y+ +++ + E + W C++G ++
Sbjct: 249 SKVKPGGRIALSGVLARQADEVAAVYARYVDISVWREHEGWVCLAGTRR 297
>sp|A4JBD7|PRMA_BURVG Ribosomal protein L11 methyltransferase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=prmA PE=3 SV=1
Length = 300
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 122/229 (53%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E+ +W++ TQ F P+ + + +W+VP W PD A + L+PGLAFG+G H TT+LC+
Sbjct: 98 EEQDWVRLTQSQFEPIPIGERIWVVPSWHDAPDPDALILELDPGLAFGTGSHPTTRLCME 157
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + +K G+ LDYG GSGIL I A K GA +G DIDPQA++SA QN+ N+
Sbjct: 158 WLEQTVKPGQSVLDYGCGSGILAILARKCGADPVIGIDIDPQAVESARQNSERNHADVTY 217
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
PD F D+V+ANIL NPL +A +
Sbjct: 218 GLPDACPDGEF-----------------------------DIVVANILSNPLKLMASMLA 248
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KPG + +SG+L+ Q + Y+ +++ + E + W C++G ++
Sbjct: 249 SKVKPGGRIALSGVLARQADEVAAVYARYVDISVWREHEGWVCLAGTRR 297
>sp|A0K4C9|PRMA_BURCH Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain HI2424) GN=prmA PE=3 SV=1
Length = 300
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 127/229 (55%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E+ +W++ TQ F P+ + + +W+VP W PD A + L+PGLAFG+G H TT+LC+
Sbjct: 98 EEQDWVRLTQSQFEPIPIGERIWVVPSWHDAPDPDALVLELDPGLAFGTGSHPTTRLCME 157
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + +K G+ LDYG GSGIL I A K GA +G DIDPQA++SA QN+ N +
Sbjct: 158 WLEQSVKPGQSVLDYGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERN----RA 213
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ +PD DG ++D+V+ANIL NPL +A +
Sbjct: 214 EVTYGLPDAC--------PDG-----------------EFDIVVANILSNPLKLMASMLA 248
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KPG + +SG+L+ Q + Y+ +++ + E + W C++G ++
Sbjct: 249 SKVKPGGRIALSGVLARQADEVAAVYARYVDISVWREHEGWVCLAGTRR 297
>sp|Q1BZC1|PRMA_BURCA Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain AU 1054) GN=prmA PE=3 SV=1
Length = 300
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 127/229 (55%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E+ +W++ TQ F P+ + + +W+VP W PD A + L+PGLAFG+G H TT+LC+
Sbjct: 98 EEQDWVRLTQSQFEPIPIGERIWVVPSWHDAPDPDALVLELDPGLAFGTGSHPTTRLCME 157
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + +K G+ LDYG GSGIL I A K GA +G DIDPQA++SA QN+ N +
Sbjct: 158 WLEQSVKPGQSVLDYGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERN----RA 213
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ +PD DG ++D+V+ANIL NPL +A +
Sbjct: 214 EVTYGLPDAC--------PDG-----------------EFDIVVANILSNPLKLMASMLA 248
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KPG + +SG+L+ Q + Y+ +++ + E + W C++G ++
Sbjct: 249 SKVKPGGRIALSGVLARQADEVAAVYARYVDISVWREHEGWVCLAGTRR 297
>sp|B3GYL9|PRMA_ACTP7 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=prmA PE=3
SV=1
Length = 293
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 125/229 (54%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ K LWI P W PD A N++L+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTALCLQ 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAA+K GA ++G DIDPQAI ++ NA N + +
Sbjct: 151 WLDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DR 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L L D+ Q + DVV+ANIL PL +LA +I+
Sbjct: 210 LQLFLAKDQ-------------------------PQDLQADVVVANILAGPLKELAPNII 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+ KP +G+SGIL+ Q + Y+ V E ++W ++G KK
Sbjct: 245 TLVKPQGDLGLSGILATQAESVCEAYAPDFNLDPVVEKEEWCRITGVKK 293
>sp|A5F3S3|PRMA_VIBC3 Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=prmA PE=3
SV=1
Length = 295
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 128/228 (56%), Gaps = 26/228 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ + LWI P W PD QA N++L+PGLAFG+G H TT LCL
Sbjct: 92 EDKDWEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLE 151
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAAIK GAA +G DIDPQA+ ++ NAA N + +
Sbjct: 152 WLDNLDLTGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQ 210
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++++L D+ +G+V DVV+ANIL PL +L+ I
Sbjct: 211 IEVYLPKDQP---------EGLV----------------ADVVVANILAGPLRELSPTIK 245
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKK 230
KPG + +SGIL Q + Y + LE ++E +W +SG+K
Sbjct: 246 GLLKPGGQLAMSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRK 293
>sp|Q39JS9|PRMA_BURS3 Ribosomal protein L11 methyltransferase OS=Burkholderia sp. (strain
383) GN=prmA PE=3 SV=1
Length = 300
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 122/229 (53%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E+ +W++ TQ F P+ + + +W+VP W PD A + L+PGLAFG+G H TT+LC+
Sbjct: 98 EEQDWVRLTQSQFEPIPIGERIWVVPSWHDAPDPDALILELDPGLAFGTGSHPTTRLCME 157
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + +K G+ LDYG GSGIL I A K GA +G DIDPQA++SA QN+ N+
Sbjct: 158 WLEQSVKPGQSVLDYGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNHADVTY 217
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
PD F D+V+ANIL NPL +A +
Sbjct: 218 GLPDACPDGEF-----------------------------DIVVANILSNPLKLMASMLA 248
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KPG + +SG+L+ Q + Y+ +++ + E + W C++G ++
Sbjct: 249 SKVKPGGRIALSGVLARQADEVAAVYARYVDISVWREHEGWVCLAGTRR 297
>sp|B6ENA3|PRMA_ALISL Ribosomal protein L11 methyltransferase OS=Aliivibrio salmonicida
(strain LFI1238) GN=prmA PE=3 SV=1
Length = 294
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 129/229 (56%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ + LWI P W P+ A N++L+PGLAFG+G HATT LCL
Sbjct: 92 EDKDWEREWMDNFHPMKFGERLWICPSWREIPEPDAINVMLDPGLAFGTGTHATTALCLE 151
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + G+ +D+G GSGIL IAAIK GAA VG DIDPQAI ++ NA N + ++
Sbjct: 152 WLESIDLTGKTVIDFGCGSGILAIAAIKLGAAKVVGIDIDPQAITASKDNATRNGVA-EQ 210
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ L L D+ E+L + DVV+ANIL PL +L+ I
Sbjct: 211 LTLFLPQDQP-------------ENLVA------------DVVVANILAAPLRELSSIIT 245
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
++ KPG + +SG+L Q ++ + YS+ ++E +W +SG KK
Sbjct: 246 AHVKPGGALAMSGVLDTQANNVASYYSDNFTLDAIAEQQEWCRISGIKK 294
>sp|A3N2I5|PRMA_ACTP2 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=prmA PE=3
SV=1
Length = 293
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 125/229 (54%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ K LWI P W PD A N++L+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWEREWMDNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTALCLQ 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAA+K GA ++G DIDPQAI ++ NA N + +
Sbjct: 151 WLDSLDLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DR 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L L D+ Q + DVV+ANIL PL +LA +I+
Sbjct: 210 LQLFLAKDQ-------------------------PQDLQADVVVANILAGPLKELAPNII 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+ KP +G+SGIL+ Q + Y+ V E ++W ++G KK
Sbjct: 245 TLVKPQGDLGLSGILATQAESVCEAYAPDFNLDPVVEKEEWCRITGVKK 293
>sp|C6DIJ9|PRMA_PECCP Ribosomal protein L11 methyltransferase OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=prmA PE=3
SV=1
Length = 295
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 131/229 (57%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ K LWI P W PD A N++L+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWEREWMDNFHPMQFGKRLWICPSWRDIPDPTAVNVMLDPGLAFGTGTHPTTALCLQ 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAA+K GAA ++G DIDPQAI+++ NA N + ++
Sbjct: 151 WLDGLDLEGKTIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ER 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L+L D+ DLS+ DVV+ANIL PL +LA I
Sbjct: 210 LELYLPKDQP-------------ADLSA------------DVVVANILAGPLRELAPLIS 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
K G +G+SG+L+ Q + Y++ V+E ++W ++G+++
Sbjct: 245 DLPKAGGHLGLSGVLATQADGVAEAYADKFTLDPVAEREEWCRITGQRR 293
>sp|Q9KV64|PRMA_VIBCH Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=prmA
PE=3 SV=1
Length = 295
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 128/228 (56%), Gaps = 26/228 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ + LWI P W PD QA N++L+PGLAFG+G H TT LCL
Sbjct: 92 EDKDWEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLE 151
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAAIK GAA +G DIDPQA+ ++ NAA N + +
Sbjct: 152 WLDNLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQ 210
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++++L D+ +G+V DVV+ANIL PL +L+ I
Sbjct: 211 IEVYLPKDQP---------EGLV----------------ADVVVANILAGPLRELSPIIK 245
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKK 230
KPG + +SGIL Q + Y + LE ++E +W +SG+K
Sbjct: 246 GLLKPGGQLAMSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRK 293
>sp|B1JVC0|PRMA_BURCC Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain MC0-3) GN=prmA PE=3 SV=1
Length = 300
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E+ +W++ TQ F P+ + + +W+VP W PD A + L+PGLAFG+G H TT+LC+
Sbjct: 98 EEQDWVRLTQSQFEPIPIGERIWVVPSWHDAPDPDALVLELDPGLAFGTGSHPTTRLCME 157
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + +K G+ LDYG GSGIL I A K GA +G DIDPQA++SA QN+ N +
Sbjct: 158 WLEQSVKPGQSVLDYGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERN----RA 213
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ +PD ++D+V+ANIL NPL +A +
Sbjct: 214 EVTYGLPDACPEG-------------------------EFDIVVANILSNPLKLMASMLA 248
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KPG + +SG+L+ Q + Y+ +++ + E + W C++G ++
Sbjct: 249 SKVKPGGRIALSGVLARQADEVAAVYARYVDISVWREHEGWVCLAGTRR 297
>sp|Q13U36|PRMA_BURXL Ribosomal protein L11 methyltransferase OS=Burkholderia xenovorans
(strain LB400) GN=prmA PE=3 SV=1
Length = 300
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 126/229 (55%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E+ +W++ TQ F P+++ + +W+VP W PD +A + L+PGLAFG+G H TT+LC+
Sbjct: 98 EEQDWVRLTQSQFDPIKIGERIWVVPSWHDAPDPEALVLELDPGLAFGTGSHPTTRLCME 157
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + ++ G+ LDYG GSGIL I A K GA G DIDPQA++SA N+ N +
Sbjct: 158 WLEQSVQPGQSVLDYGCGSGILAILAKKCGADPVYGIDIDPQAVESARHNSERN----RA 213
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ +PD T ++D+V+ANIL NPL +A +
Sbjct: 214 EVTYGLPDACPTG-------------------------EFDIVVANILSNPLKLMASMLS 248
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KPG + +SGIL+ Q + Y+ +++ + E + W C+SG ++
Sbjct: 249 SKVKPGGRIALSGILARQADEVAQVYARWIDISVWREHEGWVCLSGTRR 297
>sp|A1RFA3|PRMA_SHESW Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
W3-18-1) GN=prmA PE=3 SV=1
Length = 293
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 124/229 (54%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ +FHP++ LWI P W PD A N+IL+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWVREWMDNFHPIQFGSRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLE 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L E +D+G GSGIL +AA+K GA G DID QAI ++ NA NN+ K
Sbjct: 151 WLDSLDLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASRANAERNNVA-DK 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ L+L D+ DL K DV++ANIL PL +LA I
Sbjct: 210 LALYLPEDQP-------------ADL------------KADVLVANILAGPLRELAPLIA 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
K G + +SG+L EQ I + YS++ + + +DW+ ++GK+K
Sbjct: 245 ERVKSGGKLALSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKRK 293
>sp|A4YB19|PRMA_SHEPC Ribosomal protein L11 methyltransferase OS=Shewanella putrefaciens
(strain CN-32 / ATCC BAA-453) GN=prmA PE=3 SV=1
Length = 293
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 124/229 (54%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ +FHP++ LWI P W PD A N+IL+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWVREWMDNFHPIQFGSRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLE 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L E +D+G GSGIL +AA+K GA G DID QAI ++ NA NN+ K
Sbjct: 151 WLDSLDLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASRANAERNNVA-DK 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ L+L D+ DL K DV++ANIL PL +LA I
Sbjct: 210 LALYLPEDQP-------------ADL------------KADVLVANILAGPLRELAPLIA 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
K G + +SG+L EQ I + YS++ + + +DW+ ++GK+K
Sbjct: 245 ERVKSGGKLALSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKRK 293
>sp|C3LQP9|PRMA_VIBCM Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain M66-2) GN=prmA PE=3 SV=1
Length = 295
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 128/228 (56%), Gaps = 26/228 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ + LWI P W PD QA N++L+PGLAFG+G H TT LCL
Sbjct: 92 EDKDWEREWMDNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLE 151
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAAIK GAA +G DIDPQA+ ++ NAA N + +
Sbjct: 152 WLDNLDLTGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQ 210
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++++L D+ +G+V DVV+ANIL PL +L+ I
Sbjct: 211 IEVYLPKDQP---------EGLV----------------ADVVVANILAGPLRELSPIIK 245
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKK 230
KPG + +SGIL Q + Y + LE ++E +W +SG+K
Sbjct: 246 GLLKPGGQLAMSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRK 293
>sp|B2SYT3|PRMA_BURPP Ribosomal protein L11 methyltransferase OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=prmA PE=3 SV=1
Length = 300
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W++ TQ F P+++ + +W+VP W PD +A + L+PGLAFG+G H TT+LC+
Sbjct: 98 EDQDWVRLTQSQFDPIKIGERIWVVPSWHDAPDPEALVLELDPGLAFGTGSHPTTRLCME 157
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + ++ + LDYG GSGIL I A K GA G DIDPQA++SA N+ N +
Sbjct: 158 WLEQSVQPEQSVLDYGCGSGILAILAKKCGANPVYGIDIDPQAVESARHNSERN----RA 213
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++ +PD T ++D+V+ANIL NPL +A +
Sbjct: 214 EVIYGLPDECPTG-------------------------EFDIVVANILSNPLKLMASMLT 248
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KPG + +SGIL+ Q + YS +++ + E + W C+SG ++
Sbjct: 249 SKVKPGGKIALSGILARQADEVAQVYSRWIDISVWREHEGWVCLSGTRR 297
>sp|B5FC65|PRMA_VIBFM Ribosomal protein L11 methyltransferase OS=Vibrio fischeri (strain
MJ11) GN=prmA PE=3 SV=1
Length = 294
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ K LWI P W P+ A N++L+PGLAFG+G H TT LCL
Sbjct: 92 EDKDWEREWMDNFHPMQFGKRLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTTSLCLE 151
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAAIK GAA +G DIDPQAI ++ NA N + +
Sbjct: 152 WLEGLDLEGKTVVDFGCGSGILAIAAIKLGAAKVIGIDIDPQAILASKDNATRNGVA-DQ 210
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L+L D+ +G++ DVV+ANIL PL +L+ I
Sbjct: 211 IELYLPQDQP---------EGLI----------------ADVVVANILAGPLRELSGIIT 245
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KP + +SG+L Q + + Y+E + + E +W +SGKKK
Sbjct: 246 SLVKPQGQLAMSGVLDTQAEDVASYYAEQFDLDAIVEQQEWCRISGKKK 294
>sp|Q5E263|PRMA_VIBF1 Ribosomal protein L11 methyltransferase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=prmA PE=3 SV=1
Length = 294
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ K LWI P W P+ A N++L+PGLAFG+G H TT LCL
Sbjct: 92 EDKDWEREWMDNFHPMQFGKRLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTTSLCLE 151
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAAIK GAA +G DIDPQAI ++ NA N + +
Sbjct: 152 WLEGLDLEGKTVVDFGCGSGILAIAAIKLGAAKVIGIDIDPQAILASKDNATRNGVA-DQ 210
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L+L D+ +G++ DVV+ANIL PL +L+ I
Sbjct: 211 IELYLPQDQP---------EGLI----------------ADVVVANILAGPLRELSGIIT 245
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KP + +SG+L Q + + Y+E + + E +W +SGKKK
Sbjct: 246 SLVKPQGQLAMSGVLDTQAEDVASYYAEQFDLDAIVEQQEWCRISGKKK 294
>sp|B8F6T6|PRMA_HAEPS Ribosomal protein L11 methyltransferase OS=Haemophilus parasuis
serovar 5 (strain SH0165) GN=prmA PE=3 SV=1
Length = 294
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 123/229 (53%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP++ K LWI P W PD A N++L+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWEREWMDNFHPMQFGKRLWICPSWREIPDPNAVNVMLDPGLAFGTGTHPTTALCLT 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L + +D+G GSGIL IAA+K GA ++G DIDPQAI ++ NA +N + +
Sbjct: 151 WLDSLDLTDKTVIDFGCGSGILAIAALKLGAKKAIGIDIDPQAILASQNNAEVNGVA-DR 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L L D+ Q DVVIANIL PL +LA I+
Sbjct: 210 LQLFLTKDQ-------------------------PQNLIADVVIANILAGPLKELAPQII 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+ KP +G+SGIL+ Q + Y + + E ++W ++G KK
Sbjct: 245 TLVKPQGNLGLSGILATQAESVCKAYQNSFKLDSIIEKEEWCRITGIKK 293
>sp|Q3SMB4|PRMA_THIDA Ribosomal protein L11 methyltransferase OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=prmA PE=3 SV=1
Length = 296
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 126/227 (55%), Gaps = 31/227 (13%)
Query: 6 NWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLR 65
+W++ TQ F P+ ++ LWIVP W PD +A N+ L+PGLAFG+G H TT+LCL L
Sbjct: 100 DWVRLTQSQFDPIPISARLWIVPTWHEAPDSRALNLKLDPGLAFGTGSHPTTRLCLRWLD 159
Query: 66 RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125
++GGE LDYG GSGIL IAA K GA G DIDPQA+ ++ NAALN +
Sbjct: 160 ANLRGGETLLDYGCGSGILAIAAAKLGARRVEGVDIDPQAVSASRDNAALNEV------- 212
Query: 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA 185
D F G+ +L++ + YDVV+ANIL NPL +A +
Sbjct: 213 ----DAHF---------GLPGELAAGE---------YDVVVANILTNPLKAMAPLLAGRV 250
Query: 186 KPGAVVGISGILSEQLPHIINRYSE-FLEDILVSEMDDWTCVSGKKK 231
+ G + +SGIL+EQ ++ Y F+ D S+ + W + G K+
Sbjct: 251 RSGGSLVLSGILAEQAEDVMAVYRPWFVFDAPASD-EGWVRLVGVKR 296
>sp|Q15ZR4|PRMA_PSEA6 Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) GN=prmA PE=3 SV=1
Length = 292
Score = 154 bits (388), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 127/230 (55%), Gaps = 29/230 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP+ + LWI P W PD A N++L+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWEREWMDNFHPMRFGQRLWICPSWRDVPDPSAVNVMLDPGLAFGTGTHPTTALCLR 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L +L +D+G GSGILGIAAIK GA VG DIDPQA+ S+ NA N+IG K
Sbjct: 151 WLDALELSDKLVVDFGCGSGILGIAAIKLGAKRVVGIDIDPQALLSSQTNADRNHIG-DK 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTE-KYDVVIANILLNPLLQLADHI 181
++L+L P+ Q E K DVV+ANIL PL L + I
Sbjct: 210 IELYL-PEH--------------------------QPELKADVVLANILAGPLRDLREVI 242
Query: 182 VSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
+Y K G + +SGIL+EQ I + YS+ + +W VSGK+K
Sbjct: 243 TAYCKSGGKLVLSGILAEQAQGINDLYSQDFHMEPIEIDGEWARVSGKRK 292
>sp|Q63QN9|PRMA_BURPS Ribosomal protein L11 methyltransferase OS=Burkholderia
pseudomallei (strain K96243) GN=prmA PE=3 SV=1
Length = 300
Score = 153 bits (387), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E+ +W++ TQ F P+ + + +W+VP W P A + L+PGLAFG+G H TT+LC+
Sbjct: 98 EEQDWVRLTQSQFEPIHIGEKIWVVPSWHDAPQPDALVLELDPGLAFGTGSHPTTRLCME 157
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + ++ G+ LDYG GSGIL I A K GA G DIDPQA+++A N+ N
Sbjct: 158 WLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRA---- 213
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
D T+ G+ +D ++D+V+ANIL NPL +A +
Sbjct: 214 -------DVTY---------GLPDDCPDG---------EFDIVVANILSNPLKLMASMLA 248
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KPG + +SG+L+ Q + + Y+ +++ + E + W C++G ++
Sbjct: 249 SKVKPGGRIALSGVLARQADEVASVYARYIDIAVWREHEGWVCLAGTRR 297
>sp|A3NDQ7|PRMA_BURP6 Ribosomal protein L11 methyltransferase OS=Burkholderia
pseudomallei (strain 668) GN=prmA PE=3 SV=1
Length = 300
Score = 153 bits (387), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 29/229 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E+ +W++ TQ F P+ + + +W+VP W P A + L+PGLAFG+G H TT+LC+
Sbjct: 98 EEQDWVRLTQSQFEPIHIGEKIWVVPSWHDAPQPDALVLELDPGLAFGTGSHPTTRLCME 157
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L + ++ G+ LDYG GSGIL I A K GA G DIDPQA+++A N+ N
Sbjct: 158 WLEQTVQPGQTVLDYGCGSGILAILAKKCGAGRVTGIDIDPQAVEAARHNSERNRA---- 213
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
D T+ G+ +D ++D+V+ANIL NPL +A +
Sbjct: 214 -------DVTY---------GLPDDCPDG---------EFDIVVANILSNPLKLMASMLA 248
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
S KPG + +SG+L+ Q + + Y+ +++ + E + W C++G ++
Sbjct: 249 SKVKPGGRIALSGVLARQADEVASVYARYIDIAVWREHEGWVCLAGTRR 297
>sp|Q9CLW2|PRMA_PASMU Ribosomal protein L11 methyltransferase OS=Pasteurella multocida
(strain Pm70) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (387), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 123/227 (54%), Gaps = 26/227 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP+ K LWI P W PD ATN++L+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWEREWMDNFHPMRFGKRLWICPSWREVPDENATNVMLDPGLAFGTGTHPTTALCLE 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L + +D+G GSGIL IAA+K GA +VG DIDPQAI ++ NA N + +
Sbjct: 151 WLDSLDLQDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRNNAEQNGVA-DR 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L L D+ DL K DVV+ANIL PL +L I
Sbjct: 210 LQLFLSEDKP-------------ADL------------KADVVVANILAGPLKELYPVIR 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGK 229
KP V+G+SGIL+ Q + + Y++ V E ++W ++GK
Sbjct: 245 QLVKPNGVLGLSGILATQASSVCDAYAQSFVLEPVEEREEWCRITGK 291
>sp|Q2NWP9|PRMA_SODGM Ribosomal protein L11 methyltransferase OS=Sodalis glossinidius
(strain morsitans) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 123/229 (53%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP+ + LWI P W PD QA N++L+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWEREWMDNFHPMRFGERLWICPSWRPVPDPQAVNVMLDPGLAFGTGTHPTTALCLQ 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAA+K GAA +VG DIDPQAI ++ NA N
Sbjct: 151 WLDGLDLRGKTVIDFGCGSGILAIAALKLGAAHAVGIDIDPQAILASRDNAQRN------ 204
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
GV E L+ + + Q +VV+ANIL PL +LA I+
Sbjct: 205 --------------------GVAELLTLYLPQQQPQDLHANVVVANILAGPLRELAPLII 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
PG +G+SGIL+ Q + Y+ V+E ++W ++G ++
Sbjct: 245 DLPLPGGYLGLSGILASQAESVAQAYAAAFSLDPVAEKEEWCRITGTRR 293
>sp|Q21MK7|PRMA_SACD2 Ribosomal protein L11 methyltransferase OS=Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024) GN=prmA PE=3 SV=1
Length = 292
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 127/230 (55%), Gaps = 28/230 (12%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCL- 61
E +W ++ +++HP++ WI P W +PPD A N++L+PGLAFG+G H TT +CL
Sbjct: 90 EDKDWEREWIKNYHPIQCGPHFWICPSWLSPPDPNAINLLLDPGLAFGTGTHPTTFMCLE 149
Query: 62 LLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK 121
L ++ +K EL +DYG GSGILGIA + GA +VG DIDPQA+ + +NA N +
Sbjct: 150 WLAQQDVKNLEL-IDYGCGSGILGIAGLLMGANSAVGVDIDPQALLATQENAVRNGLA-- 206
Query: 122 KMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHI 181
F M +R + E D+V+ANIL PL++LA +
Sbjct: 207 --------KEAFPVFMPQR----------------APKEPVDMVLANILAGPLVELAPAL 242
Query: 182 VSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
++ K G + +SG+L Q II+ Y +E V E D+W C++G KK
Sbjct: 243 IALVKSGGKICLSGVLGTQRTSIISAYEHAIEFTEVREKDEWICLAGIKK 292
>sp|B8E680|PRMA_SHEB2 Ribosomal protein L11 methyltransferase OS=Shewanella baltica
(strain OS223) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 124/229 (54%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ +FHP++ LWI P W PD A N+IL+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWVREWMDNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLE 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L E +D+G GSGIL +AA+K GA G DID QAI ++ NA N++ K
Sbjct: 151 WLDSLDLSDEEVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRANAERNDVA-DK 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ L+L D+ DL K DV++ANIL PL +LA I
Sbjct: 210 LALYLPEDQP-------------ADL------------KADVLVANILAGPLRELAPLIA 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
K G + +SG+L EQ I + YS++ + + +DW+ ++GK+K
Sbjct: 245 ERVKTGGKLALSGLLKEQAQEISDFYSQWFDMDAAAHKEDWSRLTGKRK 293
>sp|C4LAF1|PRMA_TOLAT Ribosomal protein L11 methyltransferase OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=prmA PE=3 SV=1
Length = 292
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 125/229 (54%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ + F P++ + LWI P W PD A N++L+PGLAFG+G H TT LCL
Sbjct: 89 EDKDWVREWMEHFQPMQFGERLWICPSWRDVPDPTAVNVLLDPGLAFGTGTHPTTALCLQ 148
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAA+K GA +G DIDPQAI+++ NA N + +
Sbjct: 149 WLDSLDLKGKTLVDFGCGSGILAIAALKLGAERVIGIDIDPQAIEASRDNAQRNGVS-DQ 207
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L+L D+ + + D+V+ANIL PL +L+ I
Sbjct: 208 LELYLPEDQ-------------------------PKNFQADIVVANILAGPLRELSGLIS 242
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
KP ++ ISGIL Q P ++ YS++ +E ++W + G KK
Sbjct: 243 GLVKPHGLMAISGILESQAPELLEVYSQWFAMNPATEREEWCRLDGIKK 291
>sp|Q0HQK1|PRMA_SHESR Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
MR-7) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ ++HP++ K LWI P W PD A N+IL+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWVREWMDNYHPIQFGKRLWICPSWREVPDPSAVNVILDPGLAFGTGTHPTTALCLE 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L E +D+G GSGIL +AA+K GA G DID QAI+++ NA N++ +
Sbjct: 151 WLDSLDLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKANAERNDVA-DQ 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ L+L D+ DL K DV++ANIL PL +LA I
Sbjct: 210 LALYLPEDQP-------------ADL------------KADVLVANILAGPLRELAPLIA 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
K G + +SG+L EQ I + YS++ + + +DW+ ++GK+K
Sbjct: 245 ERVKSGGKLALSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKRK 293
>sp|Q0HN86|PRMA_SHESM Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
MR-4) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ ++HP++ K LWI P W PD A N+IL+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWVREWMDNYHPIQFGKRLWICPSWREVPDPSAVNVILDPGLAFGTGTHPTTALCLE 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L E +D+G GSGIL +AA+K GA G DID QAI+++ NA N++ +
Sbjct: 151 WLDSLDLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKANAERNDVA-DQ 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ L+L D+ DL K DV++ANIL PL +LA I
Sbjct: 210 LALYLPEDQP-------------ADL------------KADVLVANILAGPLRELAPLIA 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
K G + +SG+L EQ I + YS++ + + +DW+ ++GK+K
Sbjct: 245 ERVKSGGKLALSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKRK 293
>sp|A0KS74|PRMA_SHESA Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
ANA-3) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ ++HP++ K LWI P W PD A N+IL+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWVREWMDNYHPIQFGKRLWICPSWREVPDPSAVNVILDPGLAFGTGTHPTTALCLE 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L E +D+G GSGIL +AA+K GA G DID QAI+++ NA N++ +
Sbjct: 151 WLDSLDLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKANAERNDVA-DQ 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ L+L D+ DL K DV++ANIL PL +LA I
Sbjct: 210 LALYLPEDQP-------------ADL------------KADVLVANILAGPLRELAPLIA 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
K G + +SG+L EQ I + YS++ + + +DW+ ++GK+K
Sbjct: 245 ERVKSGGKLALSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKRK 293
>sp|A8GK75|PRMA_SERP5 Ribosomal protein L11 methyltransferase OS=Serratia proteamaculans
(strain 568) GN=prmA PE=3 SV=1
Length = 293
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 128/229 (55%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W ++ +FHP+ + LWI P W PD A N++L+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWEREWMDNFHPMRFGQRLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTTALCLQ 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L G+ +D+G GSGIL IAA+K GAA ++G DIDPQAI+++ NA N + ++
Sbjct: 151 WLDGLDLAGKTIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ER 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
++L+L D+ DL + DVV+ANIL PL +LA I
Sbjct: 210 LELYLPKDQP-------------ADLLA------------DVVVANILAGPLRELAPLIG 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
K G +G+SG+L+ Q + Y + V+E ++W ++G++K
Sbjct: 245 CLPKSGGHLGLSGVLATQAASVAQAYEDKFTLDPVAEREEWCRITGQRK 293
>sp|A6WTE5|PRMA_SHEB8 Ribosomal protein L11 methyltransferase OS=Shewanella baltica
(strain OS185) GN=prmA PE=3 SV=1
Length = 293
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 125/229 (54%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ +FHP++ LWI P W PD A N+IL+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWVREWMDNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLE 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L + +D+G GSGIL +AA+K GA G DID QAI ++ NA N++ K
Sbjct: 151 WLDSLDLSNKEVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRANAERNDVA-DK 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ L+L D+ DL K DV++ANIL PL +LA I
Sbjct: 210 LALYLPEDQP-------------ADL------------KADVLVANILAGPLRELAPLIA 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
K G + +SG+L EQ I + YS++ + + + +DW+ ++GK+K
Sbjct: 245 ERVKTGGKLALSGLLKEQAQEISDFYSQWFDMDVAAHKEDWSRLTGKRK 293
>sp|A3D9J5|PRMA_SHEB5 Ribosomal protein L11 methyltransferase OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=prmA PE=3 SV=1
Length = 293
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 123/229 (53%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ +FHP++ LWI P W PD A N+IL+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWVREWMDNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLE 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L E +D+G GSGIL +AA+K GA G DID QAI ++ NA N++ K
Sbjct: 151 WLDSLDLSNEEVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRANAERNDVA-DK 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ L+L D+ DL K DV++ANIL PL +LA I
Sbjct: 210 LALYLPEDQP-------------ADL------------KADVLVANILAGPLRELAPLIA 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
K G + +SG+L EQ I + YS++ + +DW+ ++GK+K
Sbjct: 245 ERVKTGGKLALSGLLKEQAQEISDFYSQWFDMDAAVHKEDWSRLTGKRK 293
>sp|A9L5E5|PRMA_SHEB9 Ribosomal protein L11 methyltransferase OS=Shewanella baltica
(strain OS195) GN=prmA PE=3 SV=1
Length = 293
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 123/229 (53%), Gaps = 26/229 (11%)
Query: 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLL 62
E +W+++ +FHP++ LWI P W PD A N+IL+PGLAFG+G H TT LCL
Sbjct: 91 EDKDWVREWMDNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLE 150
Query: 63 LLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK 122
L L E +D+G GSGIL +AA+K GA G DID QAI ++ NA N++ K
Sbjct: 151 WLDSLDLSDEEVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRANAERNDVA-DK 209
Query: 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182
+ L+L D+ DL K DV++ANIL PL +LA I
Sbjct: 210 LALYLPEDQP-------------ADL------------KADVLVANILAGPLRELAPLIA 244
Query: 183 SYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231
K + +SG+L EQ I + YS++ + + +DW+ ++GK+K
Sbjct: 245 ERVKTSGKLALSGLLKEQAQEISDFYSQWFDMDAAAHKEDWSRLTGKRK 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,746,594
Number of Sequences: 539616
Number of extensions: 3788851
Number of successful extensions: 12029
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 10787
Number of HSP's gapped (non-prelim): 709
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)