Query 026513
Match_columns 237
No_of_seqs 172 out of 1970
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:00:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2264 PrmA Ribosomal protein 100.0 8.7E-40 1.9E-44 275.6 22.0 205 3-231 94-300 (300)
2 PF06325 PrmA: Ribosomal prote 100.0 5.7E-40 1.2E-44 279.1 21.0 201 3-231 93-295 (295)
3 PRK00517 prmA ribosomal protei 100.0 1.1E-32 2.3E-37 231.6 24.8 198 3-231 52-250 (250)
4 TIGR00406 prmA ribosomal prote 100.0 6E-33 1.3E-37 237.5 22.8 197 3-224 91-288 (288)
5 PF05175 MTS: Methyltransferas 99.8 7.7E-19 1.7E-23 139.3 18.7 157 39-225 2-168 (170)
6 PRK09489 rsmC 16S ribosomal RN 99.8 3.3E-17 7.2E-22 143.1 19.3 166 38-235 166-341 (342)
7 COG2813 RsmC 16S RNA G1207 met 99.8 4.5E-17 9.7E-22 137.3 16.5 164 36-230 126-299 (300)
8 PF12847 Methyltransf_18: Meth 99.7 3.1E-17 6.6E-22 120.6 12.8 102 70-195 1-111 (112)
9 COG2227 UbiG 2-polyprenyl-3-me 99.7 1.5E-17 3.3E-22 135.5 10.1 114 70-209 59-175 (243)
10 PRK15001 SAM-dependent 23S rib 99.7 6.6E-16 1.4E-20 136.0 20.0 167 38-231 198-374 (378)
11 TIGR03533 L3_gln_methyl protei 99.7 1.3E-15 2.8E-20 130.1 19.6 161 38-227 89-281 (284)
12 COG2226 UbiE Methylase involve 99.7 2.3E-16 5E-21 130.3 14.2 119 69-211 50-172 (238)
13 PRK11805 N5-glutamine S-adenos 99.7 1.7E-15 3.6E-20 130.8 19.1 164 38-229 101-296 (307)
14 PRK13168 rumA 23S rRNA m(5)U19 99.7 6.8E-16 1.5E-20 139.7 16.5 157 38-217 264-422 (443)
15 PRK14966 unknown domain/N5-glu 99.7 3E-15 6.5E-20 132.4 19.8 152 38-217 222-403 (423)
16 TIGR00537 hemK_rel_arch HemK-r 99.7 1.5E-15 3.3E-20 121.2 16.1 132 56-217 7-163 (179)
17 PRK08287 cobalt-precorrin-6Y C 99.7 1.9E-15 4.1E-20 121.5 15.8 124 68-217 29-154 (187)
18 PRK14967 putative methyltransf 99.7 2.7E-15 5.9E-20 123.9 17.1 129 56-210 21-174 (223)
19 PRK12335 tellurite resistance 99.7 4E-16 8.6E-21 133.7 12.0 161 4-194 50-222 (287)
20 COG4123 Predicted O-methyltran 99.7 1.9E-15 4.2E-20 124.9 14.8 121 69-211 43-185 (248)
21 PRK15128 23S rRNA m(5)C1962 me 99.7 4.7E-15 1E-19 131.8 18.2 152 38-209 189-354 (396)
22 TIGR00138 gidB 16S rRNA methyl 99.7 1.6E-15 3.4E-20 121.4 13.4 112 70-208 42-154 (181)
23 COG2890 HemK Methylase of poly 99.7 1E-14 2.2E-19 124.2 18.9 144 38-211 80-253 (280)
24 TIGR03704 PrmC_rel_meth putati 99.7 7.2E-15 1.6E-19 123.4 17.7 145 38-211 54-231 (251)
25 PF13659 Methyltransf_26: Meth 99.7 5.1E-16 1.1E-20 115.0 9.4 103 71-194 1-114 (117)
26 PF01209 Ubie_methyltran: ubiE 99.7 9.2E-16 2E-20 127.3 11.7 120 68-211 45-169 (233)
27 PRK03522 rumB 23S rRNA methylu 99.7 4.9E-15 1.1E-19 128.5 16.6 146 38-207 140-286 (315)
28 COG1092 Predicted SAM-dependen 99.7 3.4E-15 7.5E-20 131.4 15.6 154 37-209 185-351 (393)
29 PRK15451 tRNA cmo(5)U34 methyl 99.7 2.3E-15 4.9E-20 126.3 13.9 118 55-197 41-166 (247)
30 PF13847 Methyltransf_31: Meth 99.6 2.1E-15 4.5E-20 117.3 12.1 106 69-197 2-112 (152)
31 PRK00107 gidB 16S rRNA methylt 99.6 2.3E-15 5E-20 120.9 12.5 102 68-195 43-145 (187)
32 COG2230 Cfa Cyclopropane fatty 99.6 1.7E-15 3.7E-20 127.4 11.5 141 34-200 26-181 (283)
33 PRK01544 bifunctional N5-gluta 99.6 1.4E-14 3.1E-19 132.7 17.6 120 71-215 139-289 (506)
34 TIGR00536 hemK_fam HemK family 99.6 2.5E-14 5.4E-19 122.4 17.8 144 38-209 82-257 (284)
35 COG2242 CobL Precorrin-6B meth 99.6 1.3E-14 2.8E-19 114.5 14.7 120 67-211 31-151 (187)
36 PF02353 CMAS: Mycolic acid cy 99.6 1.6E-15 3.5E-20 128.6 10.3 132 42-199 24-170 (273)
37 PRK11207 tellurite resistance 99.6 6.5E-15 1.4E-19 119.4 12.9 99 69-193 29-132 (197)
38 TIGR02085 meth_trns_rumB 23S r 99.6 6.1E-15 1.3E-19 130.6 13.2 145 38-207 200-346 (374)
39 COG2265 TrmA SAM-dependent met 99.6 1.3E-14 2.9E-19 129.9 14.7 153 38-213 260-414 (432)
40 PRK11783 rlmL 23S rRNA m(2)G24 99.6 2.3E-14 4.9E-19 136.2 17.1 138 39-198 508-659 (702)
41 PRK10909 rsmD 16S rRNA m(2)G96 99.6 2.8E-14 6.1E-19 115.6 15.1 150 54-230 34-190 (199)
42 TIGR03534 RF_mod_PrmC protein- 99.6 3.8E-14 8.3E-19 118.6 16.3 136 55-216 71-238 (251)
43 TIGR00740 methyltransferase, p 99.6 2.8E-14 6E-19 119.0 15.1 107 67-198 50-164 (239)
44 PLN02244 tocopherol O-methyltr 99.6 1.8E-14 3.9E-19 126.2 14.6 105 69-196 117-224 (340)
45 PRK00121 trmB tRNA (guanine-N( 99.6 1E-14 2.3E-19 118.7 11.7 122 69-211 39-172 (202)
46 PF10672 Methyltrans_SAM: S-ad 99.6 2.9E-14 6.2E-19 121.1 14.6 153 37-209 91-253 (286)
47 KOG1270 Methyltransferases [Co 99.6 1.3E-15 2.7E-20 125.3 5.8 103 71-197 90-197 (282)
48 TIGR02469 CbiT precorrin-6Y C5 99.6 3.1E-14 6.6E-19 106.1 12.8 106 68-196 17-123 (124)
49 PF08241 Methyltransf_11: Meth 99.6 7.1E-15 1.5E-19 104.1 8.7 92 75-193 1-95 (95)
50 TIGR02752 MenG_heptapren 2-hep 99.6 4E-14 8.6E-19 117.3 14.3 108 68-199 43-155 (231)
51 PRK14968 putative methyltransf 99.6 1.6E-13 3.4E-18 109.8 17.1 128 57-210 12-163 (188)
52 TIGR00477 tehB tellurite resis 99.6 1.7E-14 3.7E-19 116.8 11.6 98 70-194 30-132 (195)
53 PTZ00098 phosphoethanolamine N 99.6 2.6E-14 5.6E-19 121.0 12.6 119 51-197 35-158 (263)
54 PLN02233 ubiquinone biosynthes 99.6 4.5E-14 9.7E-19 119.4 14.0 109 68-200 71-187 (261)
55 PRK11036 putative S-adenosyl-L 99.6 2.8E-14 6.2E-19 120.1 12.6 104 68-194 42-148 (255)
56 TIGR00479 rumA 23S rRNA (uraci 99.6 2.9E-14 6.2E-19 128.8 13.3 153 38-213 259-414 (431)
57 PRK00377 cbiT cobalt-precorrin 99.6 7.7E-14 1.7E-18 113.2 14.2 121 68-210 38-160 (198)
58 TIGR00080 pimt protein-L-isoas 99.6 4.6E-14 1E-18 115.9 13.0 100 68-194 75-176 (215)
59 PLN02396 hexaprenyldihydroxybe 99.6 2.1E-14 4.6E-19 124.3 10.5 103 70-196 131-236 (322)
60 PRK13944 protein-L-isoaspartat 99.6 1.2E-13 2.6E-18 112.7 14.1 101 68-194 70-172 (205)
61 KOG1271 Methyltransferases [Ge 99.6 5E-14 1.1E-18 109.9 11.2 141 47-215 41-201 (227)
62 PRK05031 tRNA (uracil-5-)-meth 99.6 8.9E-14 1.9E-18 122.7 14.4 160 39-215 175-339 (362)
63 PRK09328 N5-glutamine S-adenos 99.5 4.2E-13 9E-18 114.0 17.6 148 40-216 79-259 (275)
64 TIGR00091 tRNA (guanine-N(7)-) 99.5 5.5E-14 1.2E-18 113.7 11.6 121 70-211 16-148 (194)
65 PRK11873 arsM arsenite S-adeno 99.5 2E-13 4.4E-18 116.0 14.9 105 68-196 75-184 (272)
66 PRK10258 biotin biosynthesis p 99.5 1.7E-13 3.8E-18 115.0 14.2 109 70-208 42-153 (251)
67 TIGR02143 trmA_only tRNA (urac 99.5 1.4E-13 3.1E-18 121.0 14.1 155 39-209 166-325 (353)
68 TIGR01177 conserved hypothetic 99.5 2.7E-13 5.9E-18 118.3 15.7 112 68-204 180-303 (329)
69 PRK11705 cyclopropane fatty ac 99.5 4.7E-14 1E-18 125.2 11.0 134 33-196 121-268 (383)
70 PRK13942 protein-L-isoaspartat 99.5 1.5E-13 3.3E-18 112.7 12.8 100 68-194 74-175 (212)
71 PRK10901 16S rRNA methyltransf 99.5 5E-13 1.1E-17 120.5 15.9 120 68-210 242-390 (427)
72 smart00828 PKS_MT Methyltransf 99.5 3.6E-13 7.8E-18 111.0 13.5 102 72-197 1-106 (224)
73 PF05401 NodS: Nodulation prot 99.5 8.8E-13 1.9E-17 105.0 14.9 132 72-231 45-197 (201)
74 PRK14103 trans-aconitate 2-met 99.5 1.2E-13 2.6E-18 116.3 10.7 94 69-194 28-125 (255)
75 PRK07402 precorrin-6B methylas 99.5 1E-12 2.3E-17 106.3 15.7 118 68-209 38-156 (196)
76 PF03848 TehB: Tellurite resis 99.5 2.7E-13 5.8E-18 108.7 11.8 100 70-196 30-134 (192)
77 PLN02781 Probable caffeoyl-CoA 99.5 3.8E-13 8.3E-18 111.9 13.2 121 58-196 57-179 (234)
78 PRK15068 tRNA mo(5)U34 methylt 99.5 2E-13 4.3E-18 118.7 11.8 104 69-196 121-227 (322)
79 PLN02336 phosphoethanolamine N 99.5 2.9E-13 6.3E-18 123.6 13.5 104 68-196 264-370 (475)
80 COG2518 Pcm Protein-L-isoaspar 99.5 2.7E-13 5.8E-18 109.2 11.3 99 68-194 70-168 (209)
81 PRK14901 16S rRNA methyltransf 99.5 8.9E-13 1.9E-17 119.1 15.7 144 68-231 250-433 (434)
82 PF05958 tRNA_U5-meth_tr: tRNA 99.5 2.3E-13 5.1E-18 119.6 11.5 164 38-216 164-330 (352)
83 TIGR00452 methyltransferase, p 99.5 2.2E-13 4.7E-18 117.6 11.0 104 69-196 120-226 (314)
84 PRK00811 spermidine synthase; 99.5 1.7E-12 3.8E-17 110.9 16.5 144 69-231 75-238 (283)
85 TIGR00095 RNA methyltransferas 99.5 5.8E-13 1.2E-17 107.3 12.6 122 53-194 29-158 (189)
86 PRK01683 trans-aconitate 2-met 99.5 3.4E-13 7.4E-18 113.6 11.6 98 68-195 29-130 (258)
87 PRK04266 fibrillarin; Provisio 99.5 2E-12 4.4E-17 106.8 15.9 133 68-223 70-214 (226)
88 PRK06922 hypothetical protein; 99.5 7.3E-13 1.6E-17 122.4 13.8 104 70-196 418-538 (677)
89 KOG2904 Predicted methyltransf 99.5 3.3E-12 7.2E-17 105.7 16.0 146 38-208 114-298 (328)
90 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.8E-12 4E-17 112.8 15.1 124 69-219 112-256 (340)
91 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.7E-12 3.7E-17 109.9 14.4 119 68-210 69-216 (264)
92 PRK00312 pcm protein-L-isoaspa 99.5 2E-12 4.4E-17 105.9 14.2 100 68-195 76-175 (212)
93 PRK11188 rrmJ 23S rRNA methylt 99.5 6.4E-13 1.4E-17 108.7 11.1 123 68-217 49-187 (209)
94 PF08003 Methyltransf_9: Prote 99.4 6.2E-13 1.4E-17 112.3 10.5 102 69-194 114-218 (315)
95 PLN02672 methionine S-methyltr 99.4 4.8E-12 1E-16 123.4 17.9 147 35-205 83-287 (1082)
96 KOG3191 Predicted N6-DNA-methy 99.4 6.5E-12 1.4E-16 98.1 15.1 115 71-211 44-184 (209)
97 PF13649 Methyltransf_25: Meth 99.4 3.2E-13 7E-18 97.7 7.4 91 74-189 1-101 (101)
98 PF01135 PCMT: Protein-L-isoas 99.4 2.9E-13 6.3E-18 110.5 7.8 108 58-194 62-171 (209)
99 TIGR02072 BioC biotin biosynth 99.4 3.3E-12 7.1E-17 105.7 14.4 108 70-205 34-145 (240)
100 PRK14121 tRNA (guanine-N(7)-)- 99.4 1.5E-12 3.3E-17 114.5 12.6 107 69-197 121-237 (390)
101 PF08242 Methyltransf_12: Meth 99.4 2.9E-14 6.3E-19 102.7 1.3 95 75-191 1-99 (99)
102 COG2519 GCD14 tRNA(1-methylade 99.4 2.6E-12 5.6E-17 105.8 12.7 125 68-218 92-219 (256)
103 PLN02476 O-methyltransferase 99.4 1E-11 2.2E-16 105.1 16.7 121 58-196 107-229 (278)
104 COG4106 Tam Trans-aconitate me 99.4 2.4E-13 5.2E-18 108.9 6.4 96 69-194 29-128 (257)
105 PRK14904 16S rRNA methyltransf 99.4 5.1E-12 1.1E-16 114.6 15.8 104 68-196 248-378 (445)
106 PF03602 Cons_hypoth95: Conser 99.4 5.1E-13 1.1E-17 106.9 8.3 127 51-196 19-154 (183)
107 TIGR03587 Pse_Me-ase pseudamin 99.4 2.3E-12 4.9E-17 105.1 12.1 99 68-198 41-145 (204)
108 PRK14902 16S rRNA methyltransf 99.4 8.7E-12 1.9E-16 113.0 17.1 105 68-195 248-379 (444)
109 KOG1540 Ubiquinone biosynthesi 99.4 3.7E-12 7.9E-17 104.5 12.9 125 69-214 99-234 (296)
110 PRK14903 16S rRNA methyltransf 99.4 2.5E-12 5.4E-17 115.9 13.1 118 68-208 235-381 (431)
111 PRK00216 ubiE ubiquinone/menaq 99.4 1E-11 2.2E-16 102.8 15.6 105 69-196 50-159 (239)
112 COG2263 Predicted RNA methylas 99.4 2E-12 4.4E-17 101.8 10.4 89 68-184 43-136 (198)
113 TIGR00563 rsmB ribosomal RNA s 99.4 3.7E-12 8.1E-17 114.8 13.6 108 68-196 236-369 (426)
114 PHA03412 putative methyltransf 99.4 3.6E-12 7.8E-17 104.8 11.9 92 70-191 49-159 (241)
115 PRK04457 spermidine synthase; 99.4 5.5E-12 1.2E-16 106.6 13.3 136 55-213 52-196 (262)
116 TIGR00417 speE spermidine synt 99.4 1.5E-11 3.2E-16 104.5 15.9 143 69-230 71-232 (270)
117 PLN02366 spermidine synthase 99.4 2.4E-11 5.2E-16 104.7 17.0 145 69-231 90-254 (308)
118 PF13489 Methyltransf_23: Meth 99.4 2.3E-12 5E-17 100.1 9.9 97 68-199 20-119 (161)
119 COG0742 N6-adenine-specific me 99.4 1E-11 2.2E-16 98.5 13.3 125 51-195 20-154 (187)
120 PF01596 Methyltransf_3: O-met 99.4 9.7E-12 2.1E-16 101.2 13.4 120 59-196 35-156 (205)
121 PF10294 Methyltransf_16: Puta 99.4 5.4E-12 1.2E-16 100.3 11.5 148 43-210 10-172 (173)
122 PF07021 MetW: Methionine bios 99.4 2.9E-12 6.4E-17 101.8 9.8 104 62-194 5-108 (193)
123 TIGR03840 TMPT_Se_Te thiopurin 99.4 9.2E-12 2E-16 102.1 12.6 105 69-196 33-153 (213)
124 PHA03411 putative methyltransf 99.4 3.7E-12 7.9E-17 107.0 10.3 113 69-211 63-205 (279)
125 PLN03075 nicotianamine synthas 99.4 1.1E-11 2.3E-16 105.6 13.2 102 70-195 123-233 (296)
126 PRK13943 protein-L-isoaspartat 99.4 1.5E-11 3.3E-16 106.5 14.3 100 68-194 78-179 (322)
127 COG4122 Predicted O-methyltran 99.4 1.8E-11 4E-16 99.8 13.6 121 55-197 45-168 (219)
128 PRK08317 hypothetical protein; 99.4 2.4E-11 5.2E-16 100.4 14.2 103 68-195 17-124 (241)
129 TIGR00438 rrmJ cell division p 99.4 5.9E-12 1.3E-16 101.3 10.2 118 68-212 30-163 (188)
130 TIGR02021 BchM-ChlM magnesium 99.3 1.5E-11 3.4E-16 101.1 12.7 99 69-194 54-157 (219)
131 PRK05785 hypothetical protein; 99.3 1.5E-11 3.3E-16 101.8 12.4 97 60-188 41-140 (226)
132 PRK11088 rrmA 23S rRNA methylt 99.3 1.9E-11 4E-16 104.0 13.1 117 58-207 72-193 (272)
133 smart00650 rADc Ribosomal RNA 99.3 1.1E-11 2.3E-16 98.1 10.7 100 68-194 11-112 (169)
134 PRK04338 N(2),N(2)-dimethylgua 99.3 1.7E-11 3.7E-16 108.7 12.3 99 71-194 58-157 (382)
135 TIGR02716 C20_methyl_CrtF C-20 99.3 2.3E-11 4.9E-16 105.1 12.4 103 68-196 147-255 (306)
136 TIGR03438 probable methyltrans 99.3 4.3E-11 9.4E-16 103.2 14.0 121 68-207 61-189 (301)
137 KOG2187 tRNA uracil-5-methyltr 99.3 1E-11 2.2E-16 110.8 10.0 152 37-210 349-505 (534)
138 cd02440 AdoMet_MTases S-adenos 99.3 3.1E-11 6.8E-16 85.5 10.5 99 73-194 1-103 (107)
139 PRK01581 speE spermidine synth 99.3 1.4E-10 3E-15 101.1 16.1 173 40-233 119-316 (374)
140 smart00138 MeTrc Methyltransfe 99.3 1.3E-11 2.8E-16 104.5 9.4 105 70-194 99-241 (264)
141 PF01170 UPF0020: Putative RNA 99.3 9.6E-11 2.1E-15 93.6 13.9 104 68-194 26-150 (179)
142 PRK13255 thiopurine S-methyltr 99.3 4.8E-11 1E-15 98.2 12.2 119 69-210 36-181 (218)
143 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 5.4E-11 1.2E-15 97.5 12.5 103 69-197 38-145 (223)
144 TIGR00308 TRM1 tRNA(guanine-26 99.3 2.2E-11 4.7E-16 107.5 10.7 127 41-194 16-146 (374)
145 PF08704 GCD14: tRNA methyltra 99.3 9.2E-11 2E-15 97.8 13.6 130 68-219 38-171 (247)
146 PTZ00146 fibrillarin; Provisio 99.3 2.5E-10 5.4E-15 97.0 16.3 142 68-232 130-288 (293)
147 PLN02336 phosphoethanolamine N 99.3 3.2E-11 6.9E-16 110.2 11.8 100 70-194 37-141 (475)
148 KOG4300 Predicted methyltransf 99.3 2.2E-11 4.7E-16 97.1 9.1 111 73-206 79-193 (252)
149 PRK03612 spermidine synthase; 99.3 3.6E-11 7.9E-16 110.9 12.1 142 69-231 296-460 (521)
150 PRK05134 bifunctional 3-demeth 99.3 5.7E-11 1.2E-15 98.5 12.0 103 69-196 47-152 (233)
151 TIGR01983 UbiG ubiquinone bios 99.3 1.2E-10 2.6E-15 95.9 13.8 103 70-196 45-150 (224)
152 PF05724 TPMT: Thiopurine S-me 99.3 2.1E-11 4.5E-16 100.3 8.7 129 68-216 35-187 (218)
153 PLN02589 caffeoyl-CoA O-methyl 99.3 1.1E-10 2.3E-15 97.6 13.1 111 70-196 79-191 (247)
154 COG1041 Predicted DNA modifica 99.3 6.9E-11 1.5E-15 101.8 11.5 105 67-196 194-311 (347)
155 PLN02585 magnesium protoporphy 99.2 1.5E-10 3.2E-15 100.2 13.5 115 56-196 129-250 (315)
156 COG2521 Predicted archaeal met 99.2 6E-11 1.3E-15 96.2 9.8 171 38-230 101-286 (287)
157 TIGR02081 metW methionine bios 99.2 3.7E-11 8.1E-16 97.1 8.7 102 64-194 7-108 (194)
158 PRK06202 hypothetical protein; 99.2 9E-11 2E-15 97.4 11.2 102 69-199 59-170 (232)
159 PRK07580 Mg-protoporphyrin IX 99.2 1.3E-10 2.9E-15 95.9 12.2 106 59-191 51-162 (230)
160 PF03291 Pox_MCEL: mRNA cappin 99.2 7.1E-11 1.5E-15 102.7 10.5 123 70-210 62-198 (331)
161 PLN02823 spermine synthase 99.2 6E-10 1.3E-14 97.1 16.2 145 69-232 102-269 (336)
162 PRK11727 23S rRNA mA1618 methy 99.2 5.5E-11 1.2E-15 102.8 9.5 84 70-173 114-201 (321)
163 PF02390 Methyltransf_4: Putat 99.2 9.6E-11 2.1E-15 94.8 9.6 119 71-210 18-148 (195)
164 PF02475 Met_10: Met-10+ like- 99.2 5.6E-11 1.2E-15 96.2 7.9 126 38-192 72-199 (200)
165 PRK13256 thiopurine S-methyltr 99.2 7.8E-10 1.7E-14 91.1 14.2 126 69-212 42-190 (226)
166 KOG2899 Predicted methyltransf 99.1 3E-10 6.5E-15 92.7 9.6 134 60-194 48-208 (288)
167 COG2520 Predicted methyltransf 99.1 5.2E-10 1.1E-14 96.9 11.8 133 39-199 160-293 (341)
168 KOG1499 Protein arginine N-met 99.1 3.4E-10 7.4E-15 97.1 10.2 101 69-193 59-165 (346)
169 PRK14896 ksgA 16S ribosomal RN 99.1 7.5E-10 1.6E-14 93.5 12.1 107 47-182 5-112 (258)
170 PRK00274 ksgA 16S ribosomal RN 99.1 1E-09 2.2E-14 93.3 12.2 89 68-184 40-128 (272)
171 KOG1975 mRNA cap methyltransfe 99.1 3.9E-10 8.4E-15 95.5 8.5 126 68-211 115-250 (389)
172 PRK11933 yebU rRNA (cytosine-C 99.1 2.1E-09 4.6E-14 97.5 13.9 106 68-196 111-243 (470)
173 COG0116 Predicted N6-adenine-s 99.1 2.4E-09 5.1E-14 93.6 13.6 103 69-195 190-344 (381)
174 PTZ00338 dimethyladenosine tra 99.1 1.1E-09 2.4E-14 94.0 11.3 112 45-182 10-122 (294)
175 KOG3420 Predicted RNA methylas 99.1 1.9E-10 4.1E-15 86.8 4.8 89 59-172 35-125 (185)
176 KOG1500 Protein arginine N-met 99.1 1.3E-09 2.8E-14 92.9 10.2 99 70-193 177-280 (517)
177 TIGR00755 ksgA dimethyladenosi 99.0 4.2E-09 9.1E-14 88.6 12.8 110 45-183 3-116 (253)
178 KOG1661 Protein-L-isoaspartate 99.0 1.8E-09 3.8E-14 86.5 9.5 116 54-194 66-192 (237)
179 PF05185 PRMT5: PRMT5 arginine 99.0 2.1E-09 4.5E-14 97.1 11.0 99 71-193 187-295 (448)
180 COG0220 Predicted S-adenosylme 99.0 2.7E-09 5.8E-14 88.0 10.7 104 72-196 50-165 (227)
181 COG1352 CheR Methylase of chem 99.0 2.3E-09 4.9E-14 90.4 9.8 124 71-194 97-240 (268)
182 PF01739 CheR: CheR methyltran 99.0 6.1E-10 1.3E-14 90.0 5.0 125 70-194 31-174 (196)
183 PF01728 FtsJ: FtsJ-like methy 99.0 5.5E-09 1.2E-13 83.4 10.4 121 70-217 23-161 (181)
184 PF01564 Spermine_synth: Sperm 99.0 9.8E-09 2.1E-13 86.0 12.0 121 55-194 61-190 (246)
185 PRK00536 speE spermidine synth 98.9 1.4E-08 3.1E-13 85.4 12.5 135 69-231 71-216 (262)
186 KOG1541 Predicted protein carb 98.9 8.3E-09 1.8E-13 83.3 10.3 116 55-199 35-164 (270)
187 PF09445 Methyltransf_15: RNA 98.9 2.3E-09 4.9E-14 83.8 6.4 77 73-170 2-78 (163)
188 KOG2361 Predicted methyltransf 98.9 3.3E-09 7.3E-14 86.6 7.5 112 73-205 74-193 (264)
189 COG4976 Predicted methyltransf 98.9 7.9E-10 1.7E-14 89.6 3.4 96 71-194 126-224 (287)
190 PRK11783 rlmL 23S rRNA m(2)G24 98.9 1.7E-08 3.7E-13 96.4 13.0 105 69-194 189-346 (702)
191 COG0144 Sun tRNA and rRNA cyto 98.9 7.6E-08 1.6E-12 84.8 15.9 122 68-210 154-306 (355)
192 COG0293 FtsJ 23S rRNA methylas 98.9 2.6E-08 5.7E-13 80.3 11.8 124 67-217 42-181 (205)
193 KOG1663 O-methyltransferase [S 98.9 2.8E-08 6.2E-13 80.8 11.6 109 70-195 73-183 (237)
194 PF02384 N6_Mtase: N-6 DNA Met 98.9 1.2E-08 2.6E-13 88.3 9.3 123 69-211 45-204 (311)
195 PRK10611 chemotaxis methyltran 98.9 1.1E-08 2.4E-13 87.2 8.7 125 71-195 116-262 (287)
196 KOG3010 Methyltransferase [Gen 98.9 1.4E-08 3E-13 83.0 8.7 101 72-196 35-138 (261)
197 TIGR00478 tly hemolysin TlyA f 98.8 7.6E-09 1.7E-13 85.5 6.6 40 69-108 74-113 (228)
198 PRK01544 bifunctional N5-gluta 98.8 4.1E-08 8.8E-13 90.4 11.5 119 70-210 347-477 (506)
199 COG0421 SpeE Spermidine syntha 98.8 6E-08 1.3E-12 82.5 11.6 104 72-194 78-189 (282)
200 COG0030 KsgA Dimethyladenosine 98.8 1.1E-07 2.4E-12 79.5 11.6 120 48-193 7-129 (259)
201 PRK00050 16S rRNA m(4)C1402 me 98.8 1.1E-07 2.3E-12 81.5 11.6 61 68-134 17-79 (296)
202 PF00891 Methyltransf_2: O-met 98.7 4.9E-08 1.1E-12 81.4 9.0 95 69-197 99-201 (241)
203 PF06080 DUF938: Protein of un 98.7 1.2E-07 2.6E-12 76.5 10.6 121 59-194 13-140 (204)
204 PF12147 Methyltransf_20: Puta 98.7 8.6E-07 1.9E-11 74.8 15.9 120 71-210 136-265 (311)
205 TIGR02987 met_A_Alw26 type II 98.7 1.6E-07 3.5E-12 87.0 12.7 83 70-171 31-122 (524)
206 PRK04148 hypothetical protein; 98.7 1.3E-07 2.7E-12 71.5 9.5 97 70-200 16-114 (134)
207 COG4262 Predicted spermidine s 98.7 2.4E-07 5.1E-12 80.1 12.2 176 38-233 256-454 (508)
208 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.7 2E-07 4.4E-12 79.7 11.9 119 68-208 83-234 (283)
209 PF02527 GidB: rRNA small subu 98.7 1.3E-07 2.9E-12 75.7 9.4 96 73-194 51-147 (184)
210 PF05219 DREV: DREV methyltran 98.7 1.5E-07 3.2E-12 78.2 9.6 89 71-194 95-187 (265)
211 COG3963 Phospholipid N-methylt 98.6 3.4E-07 7.4E-12 71.0 10.1 104 69-196 47-157 (194)
212 PLN02232 ubiquinone biosynthes 98.6 3.7E-07 8.1E-12 71.5 9.9 82 97-199 1-85 (160)
213 PF05971 Methyltransf_10: Prot 98.6 1.9E-07 4.2E-12 79.7 8.6 84 71-173 103-189 (299)
214 COG3897 Predicted methyltransf 98.6 8.7E-08 1.9E-12 76.1 6.0 95 70-193 79-176 (218)
215 COG1189 Predicted rRNA methyla 98.6 2.1E-07 4.5E-12 76.2 8.1 99 68-193 77-176 (245)
216 PF02005 TRM: N2,N2-dimethylgu 98.6 1.8E-07 3.9E-12 82.9 8.1 145 40-209 19-173 (377)
217 PF05891 Methyltransf_PK: AdoM 98.6 1.2E-07 2.6E-12 77.0 6.4 101 71-196 56-162 (218)
218 KOG0820 Ribosomal RNA adenine 98.6 2.3E-07 5E-12 77.2 8.0 79 67-171 55-133 (315)
219 COG1867 TRM1 N2,N2-dimethylgua 98.5 9.3E-07 2E-11 76.7 10.5 128 38-194 25-153 (380)
220 KOG2671 Putative RNA methylase 98.5 4.2E-07 9.1E-12 77.9 7.3 107 66-194 204-353 (421)
221 COG4076 Predicted RNA methylas 98.5 1.9E-07 4.1E-12 73.7 4.7 96 71-193 33-133 (252)
222 KOG2940 Predicted methyltransf 98.5 9.2E-07 2E-11 72.1 8.3 114 69-208 71-187 (325)
223 PF00398 RrnaAD: Ribosomal RNA 98.5 1.5E-06 3.2E-11 73.6 10.1 117 47-187 6-123 (262)
224 COG0357 GidB Predicted S-adeno 98.4 1.1E-06 2.3E-11 71.8 8.3 97 71-193 68-166 (215)
225 PF05148 Methyltransf_8: Hypot 98.4 3.4E-06 7.3E-11 68.1 10.9 134 58-233 61-200 (219)
226 PF04816 DUF633: Family of unk 98.4 1.8E-05 4E-10 64.4 15.3 135 74-233 1-142 (205)
227 TIGR03439 methyl_EasF probable 98.4 1.2E-05 2.7E-10 69.7 14.8 127 67-209 73-211 (319)
228 KOG1122 tRNA and rRNA cytosine 98.4 8.6E-06 1.9E-10 71.7 12.8 119 68-208 239-386 (460)
229 PF08123 DOT1: Histone methyla 98.4 1.1E-05 2.4E-10 65.7 12.6 111 68-197 40-160 (205)
230 KOG4589 Cell division protein 98.3 6.2E-06 1.3E-10 65.2 9.6 123 68-217 67-206 (232)
231 KOG2915 tRNA(1-methyladenosine 98.3 1.5E-05 3.3E-10 66.5 12.2 103 68-193 103-207 (314)
232 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 6.6E-07 1.4E-11 75.0 4.2 112 70-197 56-201 (256)
233 COG2384 Predicted SAM-dependen 98.3 5.7E-05 1.2E-09 61.4 14.2 144 62-230 8-158 (226)
234 TIGR00006 S-adenosyl-methyltra 98.2 3.3E-05 7.2E-10 66.4 13.3 61 68-133 18-79 (305)
235 KOG3045 Predicted RNA methylas 98.2 2.1E-05 4.5E-10 65.3 10.4 121 69-232 179-305 (325)
236 PF01269 Fibrillarin: Fibrilla 98.2 4.1E-05 8.8E-10 62.5 11.7 104 68-194 71-177 (229)
237 PRK11760 putative 23S rRNA C24 98.1 9.8E-06 2.1E-10 70.3 8.1 87 68-188 209-296 (357)
238 PF01861 DUF43: Protein of unk 98.1 0.0002 4.4E-09 59.1 15.4 102 69-194 43-148 (243)
239 KOG2730 Methylase [General fun 98.1 3.7E-06 8E-11 68.1 5.0 81 70-170 94-174 (263)
240 PF13578 Methyltransf_24: Meth 98.1 1.7E-06 3.6E-11 62.8 2.5 99 75-195 1-105 (106)
241 PRK10742 putative methyltransf 98.0 1.7E-05 3.7E-10 66.0 7.3 86 68-173 84-176 (250)
242 TIGR01444 fkbM_fam methyltrans 98.0 2.1E-05 4.5E-10 60.0 7.0 57 73-133 1-58 (143)
243 PF06962 rRNA_methylase: Putat 98.0 0.00018 3.9E-09 54.8 11.9 112 95-230 1-125 (140)
244 PF03141 Methyltransf_29: Puta 98.0 2E-05 4.2E-10 71.2 7.5 123 48-199 93-223 (506)
245 PF03059 NAS: Nicotianamine sy 98.0 5.6E-05 1.2E-09 64.1 9.2 100 72-194 122-229 (276)
246 COG1889 NOP1 Fibrillarin-like 97.9 0.00024 5.3E-09 57.0 12.1 128 68-219 74-214 (231)
247 PF13679 Methyltransf_32: Meth 97.9 8.2E-05 1.8E-09 57.0 8.7 49 69-117 24-77 (141)
248 KOG3115 Methyltransferase-like 97.9 6.1E-05 1.3E-09 60.4 7.3 124 71-211 61-199 (249)
249 COG3129 Predicted SAM-dependen 97.8 2.1E-05 4.6E-10 64.2 4.6 88 68-174 76-166 (292)
250 PF07942 N2227: N2227-like pro 97.8 0.00035 7.5E-09 59.1 11.5 57 56-113 36-98 (270)
251 KOG1709 Guanidinoacetate methy 97.8 0.00043 9.3E-09 56.2 11.2 107 65-194 96-205 (271)
252 COG0500 SmtA SAM-dependent met 97.8 0.00052 1.1E-08 51.0 11.1 101 74-197 52-157 (257)
253 COG0275 Predicted S-adenosylme 97.7 0.0018 3.8E-08 55.3 14.3 73 56-133 8-83 (314)
254 KOG4058 Uncharacterized conser 97.7 0.00047 1E-08 52.7 9.7 103 72-199 74-176 (199)
255 PF09243 Rsm22: Mitochondrial 97.7 0.00056 1.2E-08 58.3 11.4 113 71-209 34-153 (274)
256 PF04672 Methyltransf_19: S-ad 97.7 0.00037 8E-09 58.7 10.0 118 72-202 70-197 (267)
257 KOG3201 Uncharacterized conser 97.7 6.7E-05 1.4E-09 58.1 5.0 122 70-210 29-156 (201)
258 KOG3178 Hydroxyindole-O-methyl 97.7 0.0002 4.3E-09 62.1 8.3 94 71-196 178-276 (342)
259 COG0286 HsdM Type I restrictio 97.7 0.00064 1.4E-08 62.6 12.0 124 52-193 166-324 (489)
260 KOG1253 tRNA methyltransferase 97.7 2.9E-05 6.2E-10 69.8 2.9 106 69-194 108-215 (525)
261 KOG1269 SAM-dependent methyltr 97.6 0.00012 2.7E-09 64.5 6.0 104 68-194 108-214 (364)
262 PF11599 AviRa: RRNA methyltra 97.6 0.00019 4.1E-09 58.2 6.4 137 71-229 52-241 (246)
263 KOG2198 tRNA cytosine-5-methyl 97.6 0.0016 3.5E-08 56.9 12.1 112 68-196 153-297 (375)
264 PF01795 Methyltransf_5: MraW 97.5 0.00026 5.6E-09 61.0 6.7 84 68-170 18-102 (310)
265 PHA01634 hypothetical protein 97.4 0.00041 8.9E-09 51.6 5.6 51 69-119 27-77 (156)
266 PF01555 N6_N4_Mtase: DNA meth 97.4 0.00068 1.5E-08 55.3 7.2 53 58-111 179-231 (231)
267 KOG1562 Spermidine synthase [A 97.3 0.00095 2.1E-08 56.6 7.7 107 70-194 121-235 (337)
268 KOG1227 Putative methyltransfe 97.3 0.00029 6.2E-09 59.8 4.5 96 70-190 194-290 (351)
269 PRK11524 putative methyltransf 97.3 0.001 2.2E-08 56.9 7.8 57 58-115 196-252 (284)
270 KOG3987 Uncharacterized conser 97.3 3.2E-05 7E-10 62.2 -1.4 90 71-194 113-206 (288)
271 PF04989 CmcI: Cephalosporin h 97.3 0.0021 4.5E-08 52.2 8.9 122 55-194 18-146 (206)
272 KOG1501 Arginine N-methyltrans 97.3 0.0005 1.1E-08 61.2 5.7 54 73-129 69-122 (636)
273 PF11968 DUF3321: Putative met 97.2 0.0033 7.2E-08 51.2 9.7 140 55-232 30-194 (219)
274 KOG2793 Putative N2,N2-dimethy 97.2 0.0033 7.2E-08 52.5 9.6 113 71-200 87-204 (248)
275 PF07091 FmrO: Ribosomal RNA m 97.2 0.0026 5.6E-08 53.0 8.9 89 61-175 96-185 (251)
276 cd00315 Cyt_C5_DNA_methylase C 97.1 0.0014 3E-08 55.9 6.9 71 73-171 2-72 (275)
277 KOG1099 SAM-dependent methyltr 97.1 0.0011 2.3E-08 54.4 5.5 121 68-215 39-183 (294)
278 PRK13699 putative methylase; P 97.1 0.0031 6.7E-08 52.2 8.1 57 59-116 152-208 (227)
279 PF04445 SAM_MT: Putative SAM- 97.0 0.0016 3.4E-08 54.0 5.8 82 72-173 77-163 (234)
280 KOG2352 Predicted spermine/spe 96.9 0.0082 1.8E-07 54.4 10.1 103 68-195 45-161 (482)
281 COG1568 Predicted methyltransf 96.9 0.0053 1.2E-07 51.7 8.1 102 70-194 152-259 (354)
282 KOG1331 Predicted methyltransf 96.9 0.001 2.2E-08 56.1 3.8 95 69-196 44-144 (293)
283 COG1063 Tdh Threonine dehydrog 96.9 0.0035 7.6E-08 55.3 7.4 105 69-200 167-274 (350)
284 KOG0024 Sorbitol dehydrogenase 96.8 0.0048 1E-07 53.2 7.0 107 67-196 166-274 (354)
285 KOG2798 Putative trehalase [Ca 96.8 0.023 5.1E-07 48.8 10.9 132 56-193 130-294 (369)
286 COG1064 AdhP Zn-dependent alco 96.8 0.0093 2E-07 52.1 8.8 98 67-198 163-262 (339)
287 COG4798 Predicted methyltransf 96.6 0.012 2.6E-07 47.2 7.5 35 68-102 46-82 (238)
288 KOG1596 Fibrillarin and relate 96.5 0.0086 1.9E-07 49.6 6.5 105 67-194 153-260 (317)
289 PF05711 TylF: Macrocin-O-meth 96.4 0.034 7.3E-07 46.6 9.4 140 70-230 75-247 (248)
290 PRK09880 L-idonate 5-dehydroge 96.3 0.063 1.4E-06 46.9 11.1 98 69-196 168-267 (343)
291 cd08237 ribitol-5-phosphate_DH 96.2 0.028 6.2E-07 49.1 8.8 95 68-197 161-258 (341)
292 PF03141 Methyltransf_29: Puta 96.2 0.0066 1.4E-07 55.2 4.4 95 73-196 368-468 (506)
293 KOG2352 Predicted spermine/spe 95.8 0.024 5.2E-07 51.4 6.5 124 71-211 296-434 (482)
294 KOG2078 tRNA modification enzy 95.7 0.0067 1.4E-07 54.0 2.4 68 66-136 245-312 (495)
295 PF10237 N6-adenineMlase: Prob 95.6 0.099 2.1E-06 41.0 8.5 112 54-195 9-123 (162)
296 PF07757 AdoMet_MTase: Predict 95.6 0.01 2.2E-07 42.9 2.7 32 71-103 59-90 (112)
297 cd08283 FDH_like_1 Glutathione 95.6 0.071 1.5E-06 47.4 8.5 45 68-112 182-228 (386)
298 PF00107 ADH_zinc_N: Zinc-bind 95.6 0.038 8.3E-07 40.9 5.8 92 80-198 1-92 (130)
299 TIGR01202 bchC 2-desacetyl-2-h 95.5 0.1 2.3E-06 44.9 9.1 89 69-197 143-233 (308)
300 KOG2912 Predicted DNA methylas 95.5 0.016 3.6E-07 49.8 3.9 80 74-171 106-188 (419)
301 COG0270 Dcm Site-specific DNA 95.3 0.03 6.5E-07 49.0 5.2 112 72-210 4-137 (328)
302 PF10354 DUF2431: Domain of un 95.3 0.38 8.2E-06 37.9 10.9 96 77-196 3-126 (166)
303 KOG1201 Hydroxysteroid 17-beta 95.3 0.14 2.9E-06 43.9 8.8 84 70-170 37-123 (300)
304 PRK09424 pntA NAD(P) transhydr 95.3 0.14 3E-06 47.5 9.5 116 70-196 164-286 (509)
305 TIGR00675 dcm DNA-methyltransf 95.3 0.032 7E-07 48.5 5.2 40 74-113 1-40 (315)
306 TIGR03451 mycoS_dep_FDH mycoth 95.2 0.14 3E-06 45.0 9.1 103 68-197 174-278 (358)
307 COG5459 Predicted rRNA methyla 95.2 0.079 1.7E-06 46.4 7.0 108 71-199 114-229 (484)
308 PRK11524 putative methyltransf 95.2 0.03 6.5E-07 47.9 4.5 38 158-195 24-80 (284)
309 PF06859 Bin3: Bicoid-interact 95.1 0.033 7.2E-07 40.5 3.8 34 161-194 1-43 (110)
310 PRK10458 DNA cytosine methylas 94.9 0.16 3.5E-06 46.6 8.6 43 71-113 88-130 (467)
311 KOG1098 Putative SAM-dependent 94.8 0.066 1.4E-06 50.0 5.9 124 67-217 41-180 (780)
312 PF00145 DNA_methylase: C-5 cy 94.8 0.061 1.3E-06 46.3 5.6 69 73-170 2-70 (335)
313 cd00401 AdoHcyase S-adenosyl-L 94.8 0.22 4.9E-06 44.9 9.2 90 68-197 199-291 (413)
314 TIGR02822 adh_fam_2 zinc-bindi 94.7 0.45 9.7E-06 41.4 10.9 93 68-197 163-256 (329)
315 cd08281 liver_ADH_like1 Zinc-d 94.7 0.19 4.2E-06 44.3 8.6 102 68-197 189-292 (371)
316 KOG2920 Predicted methyltransf 94.7 0.031 6.7E-07 47.4 3.3 61 47-107 88-153 (282)
317 TIGR03366 HpnZ_proposed putati 94.5 0.31 6.7E-06 41.3 9.0 100 69-197 119-220 (280)
318 PF03269 DUF268: Caenorhabditi 94.5 0.075 1.6E-06 41.4 4.6 95 71-195 2-111 (177)
319 cd08230 glucose_DH Glucose deh 94.2 0.38 8.3E-06 42.1 9.4 97 69-197 171-271 (355)
320 KOG0821 Predicted ribosomal RN 94.2 0.23 5.1E-06 40.8 7.1 127 71-209 51-180 (326)
321 TIGR00497 hsdM type I restrict 94.1 0.28 6.2E-06 45.4 8.7 120 54-193 197-353 (501)
322 cd08239 THR_DH_like L-threonin 94.0 0.41 8.9E-06 41.5 9.1 102 68-197 161-264 (339)
323 PF07279 DUF1442: Protein of u 94.0 0.83 1.8E-05 37.3 9.9 101 72-196 43-149 (218)
324 PF02254 TrkA_N: TrkA-N domain 93.7 0.54 1.2E-05 34.0 7.9 89 79-194 4-95 (116)
325 cd08254 hydroxyacyl_CoA_DH 6-h 93.7 0.59 1.3E-05 40.1 9.5 101 68-196 163-264 (338)
326 PRK10309 galactitol-1-phosphat 93.7 0.53 1.2E-05 41.0 9.2 104 68-198 158-263 (347)
327 PRK13699 putative methylase; P 93.6 0.23 4.9E-06 41.2 6.2 37 158-194 17-71 (227)
328 PRK01747 mnmC bifunctional tRN 93.4 0.58 1.3E-05 44.9 9.6 35 160-194 165-205 (662)
329 PLN02740 Alcohol dehydrogenase 93.3 0.59 1.3E-05 41.5 8.9 102 68-197 196-302 (381)
330 cd08285 NADP_ADH NADP(H)-depen 92.9 0.81 1.7E-05 39.9 9.2 104 68-198 164-269 (351)
331 COG4301 Uncharacterized conser 92.8 5.2 0.00011 33.7 13.9 108 69-197 77-195 (321)
332 KOG0822 Protein kinase inhibit 92.7 0.34 7.4E-06 44.6 6.4 130 56-210 348-497 (649)
333 COG1565 Uncharacterized conser 92.5 0.67 1.4E-05 40.9 7.8 46 71-116 78-132 (370)
334 cd05188 MDR Medium chain reduc 92.5 0.89 1.9E-05 37.4 8.5 100 69-196 133-233 (271)
335 cd08238 sorbose_phosphate_red 92.4 0.76 1.6E-05 41.3 8.4 45 68-112 173-222 (410)
336 PF03686 UPF0146: Uncharacteri 92.3 1.5 3.3E-05 32.7 8.4 93 71-201 14-108 (127)
337 KOG2651 rRNA adenine N-6-methy 92.2 0.54 1.2E-05 41.7 6.8 42 70-111 153-194 (476)
338 PRK15001 SAM-dependent 23S rib 92.2 7.7 0.00017 34.7 14.3 110 57-196 32-143 (378)
339 PLN02827 Alcohol dehydrogenase 92.1 0.89 1.9E-05 40.4 8.4 102 68-197 191-297 (378)
340 TIGR03201 dearomat_had 6-hydro 92.0 0.62 1.4E-05 40.7 7.2 44 68-111 164-208 (349)
341 COG0863 DNA modification methy 91.9 0.79 1.7E-05 39.0 7.6 58 58-116 210-267 (302)
342 PF02153 PDH: Prephenate dehyd 91.6 1.1 2.3E-05 37.8 8.0 78 84-195 1-79 (258)
343 PRK05708 2-dehydropantoate 2-r 91.4 3.5 7.7E-05 35.5 11.2 113 72-208 3-117 (305)
344 PF00106 adh_short: short chai 91.4 1.9 4.2E-05 32.8 8.7 83 73-170 2-89 (167)
345 COG1255 Uncharacterized protei 91.3 2.8 6.1E-05 30.8 8.6 94 69-201 13-108 (129)
346 TIGR00561 pntA NAD(P) transhyd 91.2 0.83 1.8E-05 42.4 7.3 42 70-111 163-205 (511)
347 COG0287 TyrA Prephenate dehydr 91.2 1.9 4.1E-05 36.9 9.1 89 72-192 4-95 (279)
348 cd05278 FDH_like Formaldehyde 90.9 2.8 6.1E-05 36.2 10.2 101 68-195 165-267 (347)
349 TIGR02819 fdhA_non_GSH formald 90.6 2.3 5E-05 38.0 9.6 105 68-197 183-301 (393)
350 PLN03154 putative allyl alcoho 90.4 2.2 4.7E-05 37.4 9.0 102 68-197 156-260 (348)
351 PRK07502 cyclohexadienyl dehyd 90.3 3.4 7.4E-05 35.5 10.1 89 72-193 7-98 (307)
352 COG2961 ComJ Protein involved 90.3 4.8 0.0001 33.8 10.2 126 59-210 79-212 (279)
353 PRK05786 fabG 3-ketoacyl-(acyl 89.9 4.5 9.9E-05 32.7 10.1 57 70-134 4-64 (238)
354 cd08233 butanediol_DH_like (2R 89.8 2.6 5.7E-05 36.6 9.1 103 68-197 170-274 (351)
355 PF02737 3HCDH_N: 3-hydroxyacy 89.7 1.4 3E-05 35.0 6.7 95 74-194 2-113 (180)
356 PF02636 Methyltransf_28: Puta 89.7 0.77 1.7E-05 38.4 5.4 44 72-115 20-72 (252)
357 PRK07417 arogenate dehydrogena 89.7 2.4 5.1E-05 36.1 8.5 84 73-191 2-87 (279)
358 COG0604 Qor NADPH:quinone redu 89.5 3.5 7.5E-05 36.0 9.5 102 68-198 140-244 (326)
359 KOG3924 Putative protein methy 89.4 2 4.4E-05 38.3 7.8 111 68-197 190-310 (419)
360 TIGR00936 ahcY adenosylhomocys 89.3 3.4 7.4E-05 37.3 9.5 101 68-207 192-296 (406)
361 cd08300 alcohol_DH_class_III c 89.2 3 6.4E-05 36.7 9.0 102 68-197 184-290 (368)
362 COG1748 LYS9 Saccharopine dehy 89.1 2 4.3E-05 38.5 7.7 54 72-133 2-57 (389)
363 cd08255 2-desacetyl-2-hydroxye 89.0 2.8 6.1E-05 34.9 8.5 95 68-196 95-191 (277)
364 cd08242 MDR_like Medium chain 89.0 7.9 0.00017 33.0 11.4 91 68-194 153-244 (319)
365 PF04378 RsmJ: Ribosomal RNA s 88.6 3.2 6.9E-05 34.8 8.1 128 56-209 45-180 (245)
366 PRK05808 3-hydroxybutyryl-CoA 88.5 11 0.00024 31.9 11.8 109 73-208 5-130 (282)
367 COG2933 Predicted SAM-dependen 88.3 1.7 3.8E-05 36.8 6.4 71 68-171 209-280 (358)
368 KOG0022 Alcohol dehydrogenase, 88.3 1.3 2.8E-05 38.5 5.7 46 67-112 189-236 (375)
369 PRK06522 2-dehydropantoate 2-r 88.1 9.9 0.00021 32.3 11.3 96 73-194 2-99 (304)
370 COG1062 AdhC Zn-dependent alco 88.0 1.5 3.2E-05 38.5 5.9 46 67-112 182-229 (366)
371 PRK03659 glutathione-regulated 87.9 3.4 7.4E-05 39.3 8.9 95 72-194 401-497 (601)
372 KOG0725 Reductases with broad 87.8 7.1 0.00015 33.1 10.0 88 70-170 7-98 (270)
373 TIGR02356 adenyl_thiF thiazole 87.7 6.5 0.00014 31.7 9.4 32 71-102 21-54 (202)
374 COG1893 ApbA Ketopantoate redu 87.7 4.3 9.3E-05 35.2 8.8 111 73-208 2-114 (307)
375 PRK05476 S-adenosyl-L-homocyst 87.5 3.3 7.2E-05 37.6 8.2 90 69-198 210-302 (425)
376 PF03721 UDPG_MGDP_dh_N: UDP-g 87.5 5.6 0.00012 31.7 8.8 45 161-205 76-131 (185)
377 PRK03562 glutathione-regulated 87.4 5.5 0.00012 38.0 10.1 95 72-194 401-497 (621)
378 PF02086 MethyltransfD12: D12 87.4 1.1 2.4E-05 37.3 4.9 49 62-111 10-60 (260)
379 cd08294 leukotriene_B4_DH_like 87.4 7.1 0.00015 33.3 10.1 99 68-195 141-241 (329)
380 PRK08339 short chain dehydroge 87.2 7.5 0.00016 32.4 9.9 84 70-169 7-93 (263)
381 PRK06701 short chain dehydroge 87.0 6.4 0.00014 33.4 9.5 59 70-134 45-107 (290)
382 cd08278 benzyl_alcohol_DH Benz 87.0 3.8 8.3E-05 36.0 8.3 101 68-196 184-286 (365)
383 COG3510 CmcI Cephalosporin hyd 86.7 4 8.7E-05 33.0 7.2 104 68-194 68-179 (237)
384 TIGR02825 B4_12hDH leukotriene 86.6 9.4 0.0002 32.7 10.4 100 68-195 136-237 (325)
385 cd08261 Zn_ADH7 Alcohol dehydr 86.6 5.4 0.00012 34.3 8.9 101 68-195 157-258 (337)
386 PRK05876 short chain dehydroge 86.4 11 0.00023 31.8 10.4 59 70-134 5-66 (275)
387 PRK06035 3-hydroxyacyl-CoA deh 86.4 16 0.00034 31.2 11.5 124 72-208 4-133 (291)
388 COG0677 WecC UDP-N-acetyl-D-ma 86.3 5.2 0.00011 35.9 8.5 49 161-209 84-143 (436)
389 PRK06124 gluconate 5-dehydroge 86.3 12 0.00027 30.6 10.7 59 70-134 10-71 (256)
390 PRK07814 short chain dehydroge 86.3 11 0.00025 31.1 10.5 58 70-134 9-70 (263)
391 PRK07109 short chain dehydroge 86.0 8.5 0.00018 33.5 9.9 59 70-134 7-68 (334)
392 cd08295 double_bond_reductase_ 85.9 7 0.00015 33.8 9.3 100 68-195 149-251 (338)
393 PLN02494 adenosylhomocysteinas 85.9 3.6 7.7E-05 37.8 7.6 90 68-197 251-343 (477)
394 PRK07063 short chain dehydroge 85.9 12 0.00027 30.7 10.5 61 70-134 6-69 (260)
395 PTZ00357 methyltransferase; Pr 85.9 2.5 5.4E-05 40.6 6.6 109 73-190 703-830 (1072)
396 PRK07904 short chain dehydroge 85.9 3.7 8.1E-05 34.1 7.3 62 69-134 6-71 (253)
397 PRK06249 2-dehydropantoate 2-r 85.7 6 0.00013 34.2 8.7 49 160-208 71-119 (313)
398 PF07669 Eco57I: Eco57I restri 85.6 3.1 6.6E-05 30.0 5.8 47 161-209 2-70 (106)
399 PRK07576 short chain dehydroge 85.5 11 0.00024 31.3 10.1 58 70-134 8-69 (264)
400 cd05285 sorbitol_DH Sorbitol d 85.5 5.9 0.00013 34.3 8.6 104 68-195 160-265 (343)
401 PF02558 ApbA: Ketopantoate re 85.4 3.3 7.1E-05 31.3 6.2 50 159-208 65-114 (151)
402 PRK07097 gluconate 5-dehydroge 85.2 14 0.00031 30.5 10.6 59 70-134 9-70 (265)
403 PRK08324 short chain dehydroge 85.2 6.6 0.00014 37.9 9.5 58 70-134 421-481 (681)
404 PRK07533 enoyl-(acyl carrier p 84.7 11 0.00023 31.3 9.5 58 70-134 9-71 (258)
405 cd08293 PTGR2 Prostaglandin re 84.6 6.1 0.00013 34.1 8.3 100 68-195 150-254 (345)
406 PRK10669 putative cation:proto 84.6 8.2 0.00018 36.2 9.7 95 72-195 418-515 (558)
407 cd08265 Zn_ADH3 Alcohol dehydr 84.5 7.6 0.00016 34.4 9.0 102 68-195 201-307 (384)
408 TIGR00027 mthyl_TIGR00027 meth 84.4 22 0.00047 30.0 11.2 125 57-196 67-198 (260)
409 PRK09242 tropinone reductase; 84.3 17 0.00038 29.8 10.7 61 70-134 8-71 (257)
410 PRK06194 hypothetical protein; 84.3 14 0.00031 30.9 10.3 58 71-134 6-66 (287)
411 cd08232 idonate-5-DH L-idonate 84.3 4 8.7E-05 35.1 7.0 95 70-195 165-262 (339)
412 PF05430 Methyltransf_30: S-ad 84.1 3.2 7E-05 30.9 5.4 68 159-230 48-123 (124)
413 PRK06139 short chain dehydroge 84.1 3.8 8.2E-05 35.8 6.7 59 70-134 6-67 (330)
414 PF11312 DUF3115: Protein of u 84.0 2.6 5.5E-05 36.5 5.4 110 72-194 88-241 (315)
415 PLN02586 probable cinnamyl alc 84.0 3.1 6.7E-05 36.6 6.2 98 68-196 181-279 (360)
416 PRK12937 short chain dehydroge 83.9 14 0.0003 29.9 9.8 59 70-134 4-66 (245)
417 cd08231 MDR_TM0436_like Hypoth 83.9 11 0.00023 32.9 9.6 104 69-196 176-281 (361)
418 PF01555 N6_N4_Mtase: DNA meth 83.9 1.4 3E-05 35.5 3.7 24 173-196 34-57 (231)
419 PRK12491 pyrroline-5-carboxyla 83.9 12 0.00026 31.7 9.6 102 73-209 4-110 (272)
420 PRK06128 oxidoreductase; Provi 83.1 14 0.0003 31.4 9.8 108 70-193 54-189 (300)
421 cd08298 CAD2 Cinnamyl alcohol 82.9 19 0.00041 30.7 10.7 91 68-195 165-256 (329)
422 PRK05867 short chain dehydroge 82.9 4.7 0.0001 33.2 6.6 59 70-134 8-69 (253)
423 cd05213 NAD_bind_Glutamyl_tRNA 82.7 8.6 0.00019 33.3 8.4 37 70-106 177-215 (311)
424 PRK08507 prephenate dehydrogen 82.7 11 0.00023 31.9 8.8 84 73-192 2-88 (275)
425 cd08286 FDH_like_ADH2 formalde 82.6 11 0.00023 32.6 9.0 101 68-195 164-266 (345)
426 PRK12475 thiamine/molybdopteri 82.5 14 0.00031 32.4 9.7 33 71-103 24-58 (338)
427 COG0300 DltE Short-chain dehyd 82.4 24 0.00053 29.9 10.6 86 70-170 5-93 (265)
428 cd08291 ETR_like_1 2-enoyl thi 82.4 12 0.00025 32.1 9.1 99 70-196 142-243 (324)
429 PF11899 DUF3419: Protein of u 82.3 4.5 9.8E-05 36.2 6.5 44 68-112 33-76 (380)
430 PRK07523 gluconate 5-dehydroge 82.2 22 0.00048 29.1 10.5 58 70-134 9-70 (255)
431 PRK05854 short chain dehydroge 82.1 6.3 0.00014 33.9 7.3 87 70-170 13-102 (313)
432 TIGR00692 tdh L-threonine 3-de 82.1 10 0.00023 32.7 8.8 102 68-196 159-262 (340)
433 PRK05872 short chain dehydroge 82.1 14 0.0003 31.4 9.4 84 70-170 8-94 (296)
434 PRK12939 short chain dehydroge 82.1 18 0.00039 29.3 9.8 58 70-134 6-67 (250)
435 PRK08085 gluconate 5-dehydroge 82.0 22 0.00048 29.1 10.4 59 70-134 8-69 (254)
436 PRK07688 thiamine/molybdopteri 82.0 14 0.00031 32.4 9.6 32 71-102 24-57 (339)
437 PRK09072 short chain dehydroge 81.8 18 0.00039 29.8 9.8 58 70-134 4-64 (263)
438 PRK07035 short chain dehydroge 81.6 7.2 0.00016 31.9 7.3 58 71-134 8-68 (252)
439 PRK08265 short chain dehydroge 81.5 18 0.0004 29.8 9.8 56 70-134 5-63 (261)
440 PRK07791 short chain dehydroge 81.5 20 0.00043 30.3 10.1 59 70-134 5-75 (286)
441 PRK08862 short chain dehydroge 81.5 6.5 0.00014 32.1 6.9 59 70-134 4-65 (227)
442 cd05284 arabinose_DH_like D-ar 81.4 19 0.00041 30.9 10.1 100 68-195 165-266 (340)
443 cd08296 CAD_like Cinnamyl alco 81.4 12 0.00027 32.1 9.0 99 68-196 161-260 (333)
444 PRK07478 short chain dehydroge 81.4 7.5 0.00016 31.9 7.3 58 71-134 6-66 (254)
445 PRK08229 2-dehydropantoate 2-r 81.1 15 0.00032 32.0 9.3 49 160-208 72-120 (341)
446 PRK12743 oxidoreductase; Provi 81.1 19 0.0004 29.7 9.6 57 71-134 2-63 (256)
447 PRK06172 short chain dehydroge 81.0 6.8 0.00015 32.1 6.9 59 70-134 6-67 (253)
448 PF05050 Methyltransf_21: Meth 81.0 4 8.7E-05 31.0 5.2 42 76-117 1-49 (167)
449 PRK05597 molybdopterin biosynt 80.9 14 0.0003 32.7 9.2 33 71-103 28-62 (355)
450 cd08279 Zn_ADH_class_III Class 80.9 11 0.00025 32.9 8.6 101 68-195 180-282 (363)
451 PRK07066 3-hydroxybutyryl-CoA 80.7 27 0.00059 30.5 10.7 111 72-208 8-131 (321)
452 PRK05866 short chain dehydroge 80.6 7.3 0.00016 33.2 7.1 58 71-134 40-100 (293)
453 PRK12921 2-dehydropantoate 2-r 80.6 17 0.00037 30.9 9.5 35 160-194 67-101 (305)
454 cd08234 threonine_DH_like L-th 80.6 13 0.00029 31.7 8.8 99 68-195 157-257 (334)
455 cd05279 Zn_ADH1 Liver alcohol 80.5 5.7 0.00012 34.9 6.6 100 68-195 181-285 (365)
456 PRK06500 short chain dehydroge 80.4 22 0.00047 28.8 9.7 54 71-133 6-62 (249)
457 PRK08306 dipicolinate synthase 80.3 11 0.00025 32.3 8.2 87 70-193 151-239 (296)
458 PRK08217 fabG 3-ketoacyl-(acyl 80.3 8.8 0.00019 31.2 7.3 58 70-134 4-65 (253)
459 COG4627 Uncharacterized protei 80.2 0.59 1.3E-05 36.3 0.2 39 156-194 42-85 (185)
460 PRK05396 tdh L-threonine 3-deh 80.2 14 0.0003 31.8 8.9 101 69-196 162-264 (341)
461 PRK08818 prephenate dehydrogen 80.2 10 0.00023 33.8 8.1 33 160-192 50-85 (370)
462 PRK07677 short chain dehydroge 80.2 7.7 0.00017 31.9 7.0 58 71-134 1-61 (252)
463 PF03514 GRAS: GRAS domain fam 80.1 43 0.00094 29.8 12.1 58 55-114 97-166 (374)
464 cd01065 NAD_bind_Shikimate_DH 80.0 11 0.00025 28.3 7.4 43 70-112 18-62 (155)
465 PTZ00075 Adenosylhomocysteinas 80.0 4.9 0.00011 37.0 6.0 89 69-197 252-343 (476)
466 PRK09496 trkA potassium transp 80.0 32 0.00069 31.0 11.5 92 70-188 230-324 (453)
467 cd08236 sugar_DH NAD(P)-depend 79.9 12 0.00027 32.1 8.5 101 68-196 157-259 (343)
468 cd08263 Zn_ADH10 Alcohol dehyd 79.7 17 0.00037 31.7 9.4 100 69-195 186-287 (367)
469 PRK10083 putative oxidoreducta 79.7 12 0.00026 32.1 8.3 44 68-111 158-204 (339)
470 cd08240 6_hydroxyhexanoate_dh_ 79.6 16 0.00034 31.7 9.0 99 69-195 174-274 (350)
471 PRK12481 2-deoxy-D-gluconate 3 79.6 16 0.00034 30.1 8.7 57 70-134 7-66 (251)
472 PF01210 NAD_Gly3P_dh_N: NAD-d 79.5 11 0.00023 29.0 7.1 94 74-193 2-101 (157)
473 PF08484 Methyltransf_14: C-me 79.4 6.4 0.00014 30.7 5.8 101 58-193 55-157 (160)
474 PRK07062 short chain dehydroge 79.4 9.6 0.00021 31.5 7.4 61 70-134 7-70 (265)
475 TIGR02818 adh_III_F_hyde S-(hy 79.1 5.7 0.00012 35.0 6.2 44 68-111 183-228 (368)
476 PRK08293 3-hydroxybutyryl-CoA 79.1 34 0.00073 29.0 10.7 96 73-193 5-118 (287)
477 COG4221 Short-chain alcohol de 79.0 23 0.0005 29.6 9.2 82 71-170 6-90 (246)
478 cd08284 FDH_like_2 Glutathione 79.0 16 0.00036 31.3 9.0 100 68-195 165-266 (344)
479 PLN02514 cinnamyl-alcohol dehy 78.9 9.1 0.0002 33.5 7.3 98 69-197 179-277 (357)
480 cd08287 FDH_like_ADH3 formalde 78.8 19 0.0004 31.0 9.2 102 68-196 166-269 (345)
481 PRK12744 short chain dehydroge 78.8 27 0.00058 28.7 9.8 57 71-134 8-72 (257)
482 PRK09260 3-hydroxybutyryl-CoA 78.8 17 0.00037 30.9 8.8 40 73-113 3-44 (288)
483 PRK07890 short chain dehydroge 78.7 11 0.00024 30.9 7.5 59 70-134 4-65 (258)
484 PRK08594 enoyl-(acyl carrier p 78.5 24 0.00053 29.2 9.6 60 70-134 6-70 (257)
485 PRK06940 short chain dehydroge 78.5 26 0.00056 29.4 9.8 81 72-170 3-85 (275)
486 cd08245 CAD Cinnamyl alcohol d 78.3 30 0.00065 29.5 10.3 96 68-195 160-256 (330)
487 COG5379 BtaA S-adenosylmethion 78.3 6.2 0.00014 34.0 5.7 44 69-113 62-105 (414)
488 PRK07806 short chain dehydroge 78.2 34 0.00074 27.7 10.2 57 71-134 6-67 (248)
489 PRK11064 wecC UDP-N-acetyl-D-m 78.1 53 0.0011 29.7 13.1 118 72-209 4-134 (415)
490 PLN02178 cinnamyl-alcohol dehy 78.0 23 0.00051 31.3 9.7 97 69-197 177-275 (375)
491 cd05281 TDH Threonine dehydrog 78.0 11 0.00024 32.5 7.6 100 69-196 162-263 (341)
492 PRK05855 short chain dehydroge 78.0 19 0.00042 33.3 9.6 83 71-170 315-401 (582)
493 PRK09496 trkA potassium transp 77.9 22 0.00048 32.1 9.8 93 73-193 2-97 (453)
494 PLN02702 L-idonate 5-dehydroge 77.7 19 0.00042 31.4 9.1 102 68-195 179-285 (364)
495 PLN02256 arogenate dehydrogena 77.5 29 0.00062 30.0 9.8 84 70-189 35-121 (304)
496 cd00757 ThiF_MoeB_HesA_family 77.3 25 0.00055 28.8 9.2 33 71-103 21-55 (228)
497 PRK08589 short chain dehydroge 77.0 9.5 0.00021 31.9 6.7 58 70-134 5-65 (272)
498 cd08256 Zn_ADH2 Alcohol dehydr 77.0 19 0.00042 31.1 8.8 102 68-196 172-275 (350)
499 PRK07102 short chain dehydroge 76.9 12 0.00025 30.6 7.1 57 72-134 2-62 (243)
500 KOG1205 Predicted dehydrogenas 76.8 22 0.00049 30.4 8.8 87 70-170 11-100 (282)
No 1
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-40 Score=275.58 Aligned_cols=205 Identities=40% Similarity=0.689 Sum_probs=184.5
Q ss_pred cchhhHHHhhhcCccEEEcCceEEecCCCCCCCC-CceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcc
Q 026513 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDV-QATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGS 81 (237)
Q Consensus 3 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~ 81 (237)
.+.||.+.|+++++|++++.++++.|+|+..+.. +...++++||+.||+|+|++|.+|++++..+..+|.+|||+||||
T Consensus 94 ~e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGS 173 (300)
T COG2264 94 DEEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGS 173 (300)
T ss_pred ChHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCCh
Confidence 4789999999999999999999999999997777 789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCc
Q 026513 82 GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEK 161 (237)
Q Consensus 82 G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (237)
|.+++++++.|+.+++|+|++|.+++.|++|++.|++.. .+.....+.. .....++
T Consensus 174 GILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~---~~~~~~~~~~---------------------~~~~~~~ 229 (300)
T COG2264 174 GILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL---LVQAKGFLLL---------------------EVPENGP 229 (300)
T ss_pred hHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch---hhhcccccch---------------------hhcccCc
Confidence 999999999999999999999999999999999999874 1211122211 2222469
Q ss_pred eeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh-ccccceeeecCCEEEEEEEEc
Q 026513 162 YDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE-FLEDILVSEMDDWTCVSGKKK 231 (237)
Q Consensus 162 fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~ 231 (237)
||+|++|...+.+..+...+.+.++|||++++|+++.++...+...+.. .|..++....++|.++.++|+
T Consensus 230 ~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~eW~~i~~kr~ 300 (300)
T COG2264 230 FDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLEREEWVAIVGKRK 300 (300)
T ss_pred ccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEecCCEEEEEEEcC
Confidence 9999999988999999999999999999999999999999999999955 599999999999999999874
No 2
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=100.00 E-value=5.7e-40 Score=279.09 Aligned_cols=201 Identities=41% Similarity=0.677 Sum_probs=172.7
Q ss_pred cchhhHHHhhhcCccEEEcCceEEecCCCCCCC-CCceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcc
Q 026513 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPD-VQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGS 81 (237)
Q Consensus 3 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~ 81 (237)
+++||.+.|+++|+|+.+++++++.|+|...+. .+...+.++|+|.||+|.|++|++|++++.....+|++|||+||||
T Consensus 93 ~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GS 172 (295)
T PF06325_consen 93 EEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGS 172 (295)
T ss_dssp -HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TT
T ss_pred ccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcH
Confidence 578999999999999999999999999999765 6778999999999999999999999999999989999999999999
Q ss_pred hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc-CccccccccccccccccccccccccCCCCCC
Q 026513 82 GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP-DRTFTASMNERVDGVVEDLSSHKIRGISQTE 160 (237)
Q Consensus 82 G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (237)
|.+++.+++.|+.+|+|+|++|.+++.|++|+..|++.. ++.+.. .|. ..+
T Consensus 173 GILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~---~~~v~~~~~~-------------------------~~~ 224 (295)
T PF06325_consen 173 GILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED---RIEVSLSEDL-------------------------VEG 224 (295)
T ss_dssp SHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT---CEEESCTSCT-------------------------CCS
T ss_pred HHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe---eEEEEEeccc-------------------------ccc
Confidence 999999999999999999999999999999999999986 343321 111 147
Q ss_pred ceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhccccceeeecCCEEEEEEEEc
Q 026513 161 KYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKKK 231 (237)
Q Consensus 161 ~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 231 (237)
+||+|++|...+.+..++..+.++|+|||++++|+++.++..++...+.+.|..++....++|.++.++|+
T Consensus 225 ~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 225 KFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp -EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEEEEEETTEEEEEEEE-
T ss_pred cCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999987899999999999999999985
No 3
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=100.00 E-value=1.1e-32 Score=231.58 Aligned_cols=198 Identities=45% Similarity=0.766 Sum_probs=176.5
Q ss_pred cchhhHHHhhhcCccEEEcCceEEecCCCCCCCCCceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcch
Q 026513 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPPDVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSG 82 (237)
Q Consensus 3 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G 82 (237)
++.||.+.|+++++|+..+.++++.|+|...+......+.++|++.||+|.|+++..++..+.....++.+|||+|||+|
T Consensus 52 ~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG 131 (250)
T PRK00517 52 EDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSG 131 (250)
T ss_pred CchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHH
Confidence 57899999999999999999999999999876577888999999999999999999999999887788999999999999
Q ss_pred HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCce
Q 026513 83 ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKY 162 (237)
Q Consensus 83 ~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 162 (237)
.+++.+++.|..+|+|+|+|+.+++.|++|+..+++.. .+.+..+ +.+|
T Consensus 132 ~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~---~~~~~~~----------------------------~~~f 180 (250)
T PRK00517 132 ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVEL---NVYLPQG----------------------------DLKA 180 (250)
T ss_pred HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc---eEEEccC----------------------------CCCc
Confidence 99998888887789999999999999999999888642 2332222 2279
Q ss_pred eEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceeeecCCEEEEEEEEc
Q 026513 163 DVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVSGKKK 231 (237)
Q Consensus 163 D~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~ 231 (237)
|+|++|...+.+..++..+.++|+|||+++++++..++..++...+... |..+.....++|.++.++|+
T Consensus 181 D~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~~ 250 (250)
T PRK00517 181 DVIVANILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKKK 250 (250)
T ss_pred CEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEeC
Confidence 9999999888888899999999999999999999998899999988876 88899999999999999874
No 4
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=100.00 E-value=6e-33 Score=237.50 Aligned_cols=197 Identities=39% Similarity=0.634 Sum_probs=173.7
Q ss_pred cchhhHHHhhhcCccEEEcCceEEecCCCCCC-CCCceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcc
Q 026513 3 EQCNWIKKTQQSFHPVEVTKGLWIVPEWGAPP-DVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGS 81 (237)
Q Consensus 3 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~ 81 (237)
+++||.+.|+++|+|+.++.+++++|+|...+ ..+...+.++|++.||+|.|+++++++..+.....++.+|||+|||+
T Consensus 91 ~~~dW~~~w~~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGs 170 (288)
T TIGR00406 91 FSKDWERAWKDNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGS 170 (288)
T ss_pred chhhHHHHHHHhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCCh
Confidence 36899999999999999999999999998854 46778999999999999999999999999988777899999999999
Q ss_pred hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCc
Q 026513 82 GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEK 161 (237)
Q Consensus 82 G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (237)
|.+++.+++.|..+|+|+|+|+.+++.|++|+..+++.. ++.+...+.. . ...++
T Consensus 171 G~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~---~~~~~~~~~~---------------------~-~~~~~ 225 (288)
T TIGR00406 171 GILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSD---RLQVKLIYLE---------------------Q-PIEGK 225 (288)
T ss_pred hHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc---ceEEEecccc---------------------c-ccCCC
Confidence 999999988888899999999999999999999988764 3444444421 1 12468
Q ss_pred eeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhccccceeeecCCEE
Q 026513 162 YDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWT 224 (237)
Q Consensus 162 fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 224 (237)
||+|++|...+.+..++..+.+.|+|||+++++++...+..++...+.+.|..+++.+.++|.
T Consensus 226 fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~~~~~~W~ 288 (288)
T TIGR00406 226 ADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEIRQREEWC 288 (288)
T ss_pred ceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeEeccCCCC
Confidence 999999998888888999999999999999999999999999999998778888888899984
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.83 E-value=7.7e-19 Score=139.26 Aligned_cols=157 Identities=25% Similarity=0.364 Sum_probs=115.0
Q ss_pred eeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513 39 TNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNN 117 (237)
Q Consensus 39 ~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~ 117 (237)
.++...||++-.....+.+.++++.+... ++.+|||+|||+|.+++.+++.+ ..+|+++|+++.+++.+++|+..++
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~ 79 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG 79 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence 46778888775555567788888888754 67799999999999999999864 4479999999999999999999999
Q ss_pred CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH--------HHHHHHHHHhHhcCCCe
Q 026513 118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--------PLLQLADHIVSYAKPGA 189 (237)
Q Consensus 118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--------~~~~~l~~~~~~L~~gG 189 (237)
+.+ +.++..|.++ ..+..+||+|++|||++ ...+++..+.++|+|||
T Consensus 80 ~~~----v~~~~~d~~~---------------------~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G 134 (170)
T PF05175_consen 80 LEN----VEVVQSDLFE---------------------ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG 134 (170)
T ss_dssp CTT----EEEEESSTTT---------------------TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred ccc----cccccccccc---------------------cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCC
Confidence 875 7788888763 22257999999999962 45688999999999999
Q ss_pred EEEEeccCCCCHHHHHHHHhhccccceee-ecCCEEE
Q 026513 190 VVGISGILSEQLPHIINRYSEFLEDILVS-EMDDWTC 225 (237)
Q Consensus 190 ~liis~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~ 225 (237)
.+++..........+ +...|..+++. ..+++..
T Consensus 135 ~l~lv~~~~~~~~~~---l~~~f~~~~~~~~~~~~~v 168 (170)
T PF05175_consen 135 RLFLVINSHLGYERL---LKELFGDVEVVAKNKGFRV 168 (170)
T ss_dssp EEEEEEETTSCHHHH---HHHHHS--EEEEEESSEEE
T ss_pred EEEEEeecCCChHHH---HHHhcCCEEEEEECCCEEE
Confidence 998754333333333 44444455443 3444543
No 6
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.77 E-value=3.3e-17 Score=143.10 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=126.1
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
...+...|+.++..+....+.+++..+... ...+|||+|||+|.+++.+++. +..+++++|+|+.+++.|++++..+
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n 243 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN 243 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 467888999999988888989888877532 2348999999999999999876 5568999999999999999999998
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH--------HHHHHHHHhHhcCCC
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--------LLQLADHIVSYAKPG 188 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------~~~~l~~~~~~L~~g 188 (237)
++. ..++..|..+ . ..++||+|++|||+|. ..+++..+.+.|+||
T Consensus 244 ~l~-----~~~~~~D~~~--------------------~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkpg 296 (342)
T PRK09489 244 GLE-----GEVFASNVFS--------------------D--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSG 296 (342)
T ss_pred CCC-----CEEEEccccc--------------------c--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcC
Confidence 865 3455666542 1 1468999999999864 357899999999999
Q ss_pred eEEEEeccCCCCHHHHHHHHhhcccccee-eecCCEEEEEEEEccccc
Q 026513 189 AVVGISGILSEQLPHIINRYSEFLEDILV-SEMDDWTCVSGKKKRVKE 235 (237)
Q Consensus 189 G~liis~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~ 235 (237)
|.+++.....-.-+.+++. .|...++ .+.+.+..+.++|.|+..
T Consensus 297 G~L~iVan~~l~y~~~l~~---~Fg~~~~la~~~~f~v~~a~~~~~~~ 341 (342)
T PRK09489 297 GELRIVANAFLPYPDLLDE---TFGSHEVLAQTGRFKVYRAIMTRQAK 341 (342)
T ss_pred CEEEEEEeCCCChHHHHHH---HcCCeEEEEeCCCEEEEEEEccCcCC
Confidence 9999865432222333332 2333333 467889999999887754
No 7
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4.5e-17 Score=137.30 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=126.8
Q ss_pred CCceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHH
Q 026513 36 VQATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAA 114 (237)
Q Consensus 36 ~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~ 114 (237)
.....|.-.||++-.......++++++.+... .+.+|||+|||.|.+++.+++. +..+++.+|+|..+++.|++|+.
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCcc--CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH
Confidence 45677888999888888888888888887543 2338999999999999999976 67899999999999999999999
Q ss_pred HcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH--------HHHHHHHHhHhcC
Q 026513 115 LNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--------LLQLADHIVSYAK 186 (237)
Q Consensus 115 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------~~~~l~~~~~~L~ 186 (237)
.|++.+ ..+...|.++ .. .++||+|+||||+|- ..+++....+.|+
T Consensus 204 ~N~~~~----~~v~~s~~~~--------------------~v--~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~ 257 (300)
T COG2813 204 ANGVEN----TEVWASNLYE--------------------PV--EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK 257 (300)
T ss_pred HcCCCc----cEEEEecccc--------------------cc--cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc
Confidence 999886 3566677653 22 349999999999743 2378999999999
Q ss_pred CCeEEEEeccCCCCHHHHHHHHhhcccccee-eecCCEEEEEEEE
Q 026513 187 PGAVVGISGILSEQLPHIINRYSEFLEDILV-SEMDDWTCVSGKK 230 (237)
Q Consensus 187 ~gG~liis~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~ 230 (237)
+||.|.|-.. ........+++.|..+++ ...+++..+..+|
T Consensus 258 ~gGeL~iVan---~~l~y~~~L~~~Fg~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 258 PGGELWIVAN---RHLPYEKKLKELFGNVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred cCCEEEEEEc---CCCChHHHHHHhcCCEEEEEeCCCEEEEEEec
Confidence 9999999654 334445555666665554 4566677776655
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=3.1e-17 Score=120.62 Aligned_cols=102 Identities=30% Similarity=0.456 Sum_probs=83.9
Q ss_pred CCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc-ccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT-FTASMNERVDGVVED 147 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~~~ 147 (237)
|+.+|||+|||+|.+++.+++ .+..+++|+|+|+.+++.|++++...+... ++.++++|+ .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~i~~~~~d~~~-------------- 63 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSD---RITFVQGDAEF-------------- 63 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTT---TEEEEESCCHG--------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCC---CeEEEECcccc--------------
Confidence 578999999999999999998 578889999999999999999996666554 588999998 2
Q ss_pred cccccccCCCCCCceeEEEEeC-Ch----H--HHHHHHHHHhHhcCCCeEEEEec
Q 026513 148 LSSHKIRGISQTEKYDVVIANI-LL----N--PLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~-~~----~--~~~~~l~~~~~~L~~gG~liis~ 195 (237)
......+||+|+++. .. + ...++++.+.+.|+|||+++++.
T Consensus 64 -------~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 64 -------DPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -------GTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------CcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 122246799999988 32 2 23567999999999999999863
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.73 E-value=1.5e-17 Score=135.47 Aligned_cols=114 Identities=22% Similarity=0.270 Sum_probs=93.0
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
+|++|||+|||.|.++..+|+.| .+|+|+|+++.+|+.|+..+..+++. +.+.+....+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~-----i~y~~~~~ed--------------- 117 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN-----IDYRQATVED--------------- 117 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhcccc-----ccchhhhHHH---------------
Confidence 78999999999999999999998 66999999999999999999998876 4455555431
Q ss_pred cccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS 209 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~ 209 (237)
.....++||+|+|..+++|+ ..++..+.+++||||.+++|.+-.+....+...+.
T Consensus 118 -----l~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ 175 (243)
T COG2227 118 -----LASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG 175 (243)
T ss_pred -----HHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH
Confidence 11124799999999999887 46899999999999999999887665554444443
No 10
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.72 E-value=6.6e-16 Score=136.02 Aligned_cols=167 Identities=14% Similarity=0.181 Sum_probs=121.3
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
...+.-.|+.+-..+....++++++.+.. ..+.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|++|+..+
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n 275 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN 275 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc--ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 45666778888777778888888887743 22458999999999999999865 6778999999999999999999888
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH--------HHHHHHHHhHhcCCC
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--------LLQLADHIVSYAKPG 188 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------~~~~l~~~~~~L~~g 188 (237)
+... ..++++...|..+ .. ...+||+|+||||++. ..+++..+.+.|+||
T Consensus 276 ~~~~-~~~v~~~~~D~l~--------------------~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpG 333 (378)
T PRK15001 276 MPEA-LDRCEFMINNALS--------------------GV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN 333 (378)
T ss_pred Cccc-CceEEEEEccccc--------------------cC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccC
Confidence 6431 1146777777652 11 2458999999999853 346789999999999
Q ss_pred eEEEEeccCCCCHHHHHHHHhhccccceee-ecCCEEEEEEEEc
Q 026513 189 AVVGISGILSEQLPHIINRYSEFLEDILVS-EMDDWTCVSGKKK 231 (237)
Q Consensus 189 G~liis~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~ 231 (237)
|.+++.....- .+...++..|...++. ....+..+...|.
T Consensus 334 G~L~iV~nr~l---~y~~~L~~~fg~~~~va~~~kf~vl~a~k~ 374 (378)
T PRK15001 334 GELYIVANRHL---DYFHKLKKIFGNCTTIATNNKFVVLKAVKL 374 (378)
T ss_pred CEEEEEEecCc---CHHHHHHHHcCCceEEccCCCEEEEEEEeC
Confidence 99999854222 2333333344444444 4556777777763
No 11
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.71 E-value=1.3e-15 Score=130.15 Aligned_cols=161 Identities=16% Similarity=0.171 Sum_probs=112.3
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhhc--cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHH
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLI--KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAA 114 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~ 114 (237)
...+.++|+..+- ...+..++...+...+ .++.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++|+.
T Consensus 89 g~~f~v~~~vlip--r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~ 166 (284)
T TIGR03533 89 GLEFYVDERVLIP--RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIE 166 (284)
T ss_pred CcEEEECCCCccC--CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 3567778876652 1334455555554332 34578999999999999999975 45789999999999999999999
Q ss_pred HcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH----------------------
Q 026513 115 LNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN---------------------- 172 (237)
Q Consensus 115 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~---------------------- 172 (237)
.+++.+ ++.++++|+.+ .+ +..+||+|++|||+.
T Consensus 167 ~~~~~~---~i~~~~~D~~~--------------------~~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~g 222 (284)
T TIGR03533 167 RHGLED---RVTLIQSDLFA--------------------AL-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALAS 222 (284)
T ss_pred HcCCCC---cEEEEECchhh--------------------cc-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcC
Confidence 998764 48888999763 11 245799999999841
Q ss_pred ------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceeeecCCEEEEE
Q 026513 173 ------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVS 227 (237)
Q Consensus 173 ------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~ 227 (237)
.+..++..+.+.|+|||++++..-. +..++...+.+. |.. .....++|..+.
T Consensus 223 g~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--~~~~v~~~~~~~~~~~-~~~~~~~~~~~~ 281 (284)
T TIGR03533 223 GEDGLDLVRRILAEAADHLNENGVLVVEVGN--SMEALEEAYPDVPFTW-LEFENGGDGVFL 281 (284)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--CHHHHHHHHHhCCCce-eeecCCCcEEEE
Confidence 2356788899999999999985322 224666666653 322 233444454443
No 12
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=2.3e-16 Score=130.26 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=99.6
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.+|.+|||+|||||-+++.+++. |..+|+|+|+|+.|++.|++.+...+..+ ++++++|+.+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~----i~fv~~dAe~------------- 112 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN----VEFVVGDAEN------------- 112 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc----eEEEEechhh-------------
Confidence 37999999999999999999975 67899999999999999999999877775 8899999874
Q ss_pred cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
.+.++.+||+|.+...++.+ .+.++++.|+|||||++++..+.......+...+..+
T Consensus 113 -------LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~ 172 (238)
T COG2226 113 -------LPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY 172 (238)
T ss_pred -------CCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence 33558899999998876554 5679999999999999999888766655555555443
No 13
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.70 E-value=1.7e-15 Score=130.77 Aligned_cols=164 Identities=16% Similarity=0.193 Sum_probs=113.7
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhhccC--CCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHH
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKG--GELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAA 114 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~--~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~ 114 (237)
...+.++|+..+- ...+..++...+...++. ..+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+.
T Consensus 101 g~~f~v~~~vlip--r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~ 178 (307)
T PRK11805 101 GLEFYVDERVLVP--RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIE 178 (307)
T ss_pred CcEEEECCCCcCC--CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3567777776552 233445555544433232 268999999999999999865 56789999999999999999999
Q ss_pred HcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH----------------------
Q 026513 115 LNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN---------------------- 172 (237)
Q Consensus 115 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~---------------------- 172 (237)
.+++.+ ++.++++|+.+ .+ +..+||+|++|||+.
T Consensus 179 ~~~l~~---~i~~~~~D~~~--------------------~l-~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~g 234 (307)
T PRK11805 179 RHGLED---RVTLIESDLFA--------------------AL-PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAA 234 (307)
T ss_pred HhCCCC---cEEEEECchhh--------------------hC-CCCCccEEEECCCCCCccchhhcCHhhccCccceeeC
Confidence 988764 48888999763 11 245899999999741
Q ss_pred ------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceeeecCCEEEEEEE
Q 026513 173 ------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVSEMDDWTCVSGK 229 (237)
Q Consensus 173 ------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~ 229 (237)
.+..++..+.++|+|||.+++..-. . ..++...+... +........+.|..+..+
T Consensus 235 g~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (307)
T PRK11805 235 GDDGLDLVRRILAEAPDYLTEDGVLVVEVGN-S-RVHLEEAYPDVPFTWLEFENGGDGVFLLTR 296 (307)
T ss_pred CCchHHHHHHHHHHHHHhcCCCCEEEEEECc-C-HHHHHHHHhhCCCEEEEecCCCceEEEEEH
Confidence 2346788899999999999985222 2 33455555543 434444455556555543
No 14
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.70 E-value=6.8e-16 Score=139.67 Aligned_cols=157 Identities=13% Similarity=0.058 Sum_probs=121.2
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
...+.+.|+.+|+.+...+..+....+... ..++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|++|+..+
T Consensus 264 g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~ 342 (443)
T PRK13168 264 GLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRN 342 (443)
T ss_pred CeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence 467888888888876665555554444432 3567899999999999999999874 68999999999999999999999
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccC-CCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRG-ISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
++.+ +.++++|+.+.. .. ...+.+||+|++|||+....+.+..+.+ ++|++.+|+||
T Consensus 343 ~~~~----v~~~~~d~~~~l-----------------~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 343 GLDN----VTFYHANLEEDF-----------------TDQPWALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CCCc----eEEEEeChHHhh-----------------hhhhhhcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEe
Confidence 8875 889999986311 01 1123579999999998877777766655 69999999999
Q ss_pred cCCCCHHHHHHHHhhcccccee
Q 026513 196 ILSEQLPHIINRYSEFLEDILV 217 (237)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~ 217 (237)
...+..+++.......|....+
T Consensus 401 np~tlaRDl~~L~~~gY~l~~i 422 (443)
T PRK13168 401 NPATLARDAGVLVEAGYRLKRA 422 (443)
T ss_pred ChHHhhccHHHHhhCCcEEEEE
Confidence 9888888888776665544443
No 15
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.69 E-value=3e-15 Score=132.39 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=111.9
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
...+.++|+..+ .++.+..+.+.+...++++.+|||+|||+|.+++.+++. +..+++++|+|+.+++.|++|+..+
T Consensus 222 G~~f~V~p~vLI---PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~ 298 (423)
T PRK14966 222 GRRFAVNPNVLI---PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL 298 (423)
T ss_pred CcEEEeCCCccC---CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 456788887655 367777777776555566779999999999999998864 6788999999999999999999887
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh-------------------------
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------------------- 171 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------------------- 171 (237)
+. ++.++++|+++.. ....++||+|+||||+
T Consensus 299 g~-----rV~fi~gDl~e~~-------------------l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~ 354 (423)
T PRK14966 299 GA-----RVEFAHGSWFDTD-------------------MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFS 354 (423)
T ss_pred CC-----cEEEEEcchhccc-------------------cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCC
Confidence 64 3888899986311 1113579999999984
Q ss_pred ---HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee
Q 026513 172 ---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV 217 (237)
Q Consensus 172 ---~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~ 217 (237)
..++++++.+.+.|+|||.+++. +-.++...+...+... |..+++
T Consensus 355 dGL~~yr~Ii~~a~~~LkpgG~lilE-iG~~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 355 DGLSCIRTLAQGAPDRLAEGGFLLLE-HGFDQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred chHHHHHHHHHHHHHhcCCCcEEEEE-ECccHHHHHHHHHHHCCCcEEEE
Confidence 12346778888999999998873 2235556666666553 544433
No 16
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.69 E-value=1.5e-15 Score=121.22 Aligned_cols=132 Identities=26% Similarity=0.319 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513 56 TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA 135 (237)
Q Consensus 56 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~ 135 (237)
.+.++...+. ..++.+|||+|||+|.++..++..+. +++++|+|+.+++.+++++..+++. +.++.+|..+
T Consensus 7 d~~~l~~~l~--~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~d~~~- 77 (179)
T TIGR00537 7 DSLLLEANLR--ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVG-----LDVVMTDLFK- 77 (179)
T ss_pred cHHHHHHHHH--hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCc-----eEEEEccccc-
Confidence 3344444443 23467899999999999999998765 8999999999999999999877653 6777888652
Q ss_pred cccccccccccccccccccCCCCCCceeEEEEeCChH------------------------HHHHHHHHHhHhcCCCeEE
Q 026513 136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN------------------------PLLQLADHIVSYAKPGAVV 191 (237)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~------------------------~~~~~l~~~~~~L~~gG~l 191 (237)
.. .++||+|++|+|++ .+.+++..+.++|+|||.+
T Consensus 78 --------------------~~-~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~ 136 (179)
T TIGR00537 78 --------------------GV-RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRV 136 (179)
T ss_pred --------------------cc-CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEE
Confidence 11 35899999999862 1346789999999999999
Q ss_pred EEeccCCCCHHHHHHHHhhc-ccccee
Q 026513 192 GISGILSEQLPHIINRYSEF-LEDILV 217 (237)
Q Consensus 192 iis~~~~~~~~~~~~~~~~~-~~~~~~ 217 (237)
++.........++...+.+. |....+
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 137 QLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred EEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 99766666567777777654 544433
No 17
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.68 E-value=1.9e-15 Score=121.52 Aligned_cols=124 Identities=17% Similarity=0.270 Sum_probs=99.5
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.++.+|||+|||+|.+++.+++. +..+|+++|+++.+++.|++++..+++.+ +.++.+|...
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~----i~~~~~d~~~------------ 92 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN----IDIIPGEAPI------------ 92 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC----eEEEecCchh------------
Confidence 357889999999999999998875 45789999999999999999998887753 7777777531
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV 217 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~ 217 (237)
.. ..+||+|+++.....+..++..+.+.|+|||++++..+...+..++...+.+. |..++.
T Consensus 93 --------~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 93 --------EL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred --------hc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 11 35799999988766678889999999999999999876666777777777654 544443
No 18
>PRK14967 putative methyltransferase; Provisional
Probab=99.68 E-value=2.7e-15 Score=123.92 Aligned_cols=129 Identities=28% Similarity=0.316 Sum_probs=96.9
Q ss_pred hHHHHHHHHHh-hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 56 TTKLCLLLLRR-LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 56 ~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.+..+...+.. .+.++.+|||+|||+|.++..+++.+..+++++|+|+.+++.+++|+..+++. +.++.+|+.+
T Consensus 21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-----~~~~~~d~~~ 95 (223)
T PRK14967 21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD-----VDVRRGDWAR 95 (223)
T ss_pred cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCe-----eEEEECchhh
Confidence 34455555543 25678899999999999999998877668999999999999999999887653 6677788652
Q ss_pred ccccccccccccccccccccCCCCCCceeEEEEeCChHH------------------------HHHHHHHHhHhcCCCeE
Q 026513 135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP------------------------LLQLADHIVSYAKPGAV 190 (237)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~------------------------~~~~l~~~~~~L~~gG~ 190 (237)
..++.+||+|++|+|+.. +..+++.+.++|++||.
T Consensus 96 ---------------------~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 96 ---------------------AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred ---------------------hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence 123568999999987431 34577889999999999
Q ss_pred EEEeccCCCCHHHHHHHHhh
Q 026513 191 VGISGILSEQLPHIINRYSE 210 (237)
Q Consensus 191 liis~~~~~~~~~~~~~~~~ 210 (237)
+++...-.....+++..+..
T Consensus 155 l~~~~~~~~~~~~~~~~l~~ 174 (223)
T PRK14967 155 LLLVQSELSGVERTLTRLSE 174 (223)
T ss_pred EEEEEecccCHHHHHHHHHH
Confidence 99853333345566666654
No 19
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=4e-16 Score=133.65 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=112.6
Q ss_pred chhhHHHhhhcCccEEEcCceEEecCCCCCC-C----CCceeEEeCcccccCCCCc--hhHHHHHHHHHhhccCCCeEEE
Q 026513 4 QCNWIKKTQQSFHPVEVTKGLWIVPEWGAPP-D----VQATNIILNPGLAFGSGEH--ATTKLCLLLLRRLIKGGELFLD 76 (237)
Q Consensus 4 ~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~f~~g~~--~~~~~~~~~l~~~~~~~~~vLD 76 (237)
+++|...|+..+.|..... ++..+.|+... . .-.+++...|...|..... .....++..+. ..+ +.+|||
T Consensus 50 de~g~~~~~~~l~~~~~~~-~i~p~~wh~v~~~s~d~~~~l~fy~~~~~~f~~~~~~~~~~~~~~~~~~-~~~-~~~vLD 126 (287)
T PRK12335 50 TEDGEELSEHIFDAENQPP-FIEPQAWHRIEAASDDLECQLSFYCKPEDYFHKKYNLTATHSEVLEAVQ-TVK-PGKALD 126 (287)
T ss_pred CCCCCeeeEEEEecCCCCc-eeCCcceEEEEEcCCCcEEEEEEEEcchhhHhhhhccccccHHHHHHhh-ccC-CCCEEE
Confidence 4566677777666663222 33344577621 1 2234577788877765542 33444444443 233 449999
Q ss_pred EcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCC
Q 026513 77 YGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGI 156 (237)
Q Consensus 77 lG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (237)
+|||+|..+..+++.| .+|+|+|+|+.+++.+++++..+++ + +.+...|+.. .
T Consensus 127 lGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l-~----v~~~~~D~~~---------------------~ 179 (287)
T PRK12335 127 LGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL-N----IRTGLYDINS---------------------A 179 (287)
T ss_pred eCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC-c----eEEEEechhc---------------------c
Confidence 9999999999999886 5799999999999999999988876 2 6666666542 1
Q ss_pred CCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEe
Q 026513 157 SQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 157 ~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis 194 (237)
..+++||+|+++.++++ ...+++.+.++|+|||++++.
T Consensus 180 ~~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 180 SIQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 12568999999887653 457899999999999997663
No 20
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.67 E-value=1.9e-15 Score=124.92 Aligned_cols=121 Identities=24% Similarity=0.327 Sum_probs=97.5
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
....+|||+|||+|.+++.++.. ...++++||+++++.+.|++|+..+++.. +++++++|+.+..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~---ri~v~~~Di~~~~----------- 108 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEE---RIQVIEADIKEFL----------- 108 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchh---ceeEehhhHHHhh-----------
Confidence 34679999999999999999976 66889999999999999999999999887 6999999986322
Q ss_pred cccccccCCCCCCceeEEEEeCChH---------------------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHH
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLN---------------------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIIN 206 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~---------------------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~ 206 (237)
......+||+|+||||+. ...++++.+..+|||||.+++. ...+...++..
T Consensus 109 -------~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-~r~erl~ei~~ 180 (248)
T COG4123 109 -------KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV-HRPERLAEIIE 180 (248)
T ss_pred -------hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE-ecHHHHHHHHH
Confidence 222234799999999941 1246789999999999999984 34556667777
Q ss_pred HHhhc
Q 026513 207 RYSEF 211 (237)
Q Consensus 207 ~~~~~ 211 (237)
.++.+
T Consensus 181 ~l~~~ 185 (248)
T COG4123 181 LLKSY 185 (248)
T ss_pred HHHhc
Confidence 77763
No 21
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.67 E-value=4.7e-15 Score=131.82 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=111.9
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN 117 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~ 117 (237)
...+.++......+|..-..+.....+... .+|++|||+|||+|.+++.++..++.+|+++|+|+.+++.|++|+..|+
T Consensus 189 g~~f~vdl~~g~ktG~flDqr~~R~~~~~~-~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ng 267 (396)
T PRK15128 189 GMKLLVDIQGGHKTGYYLDQRDSRLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK 267 (396)
T ss_pred CEEEEEecccccccCcChhhHHHHHHHHHh-cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 456666666666677776665555555443 4688999999999999998777777899999999999999999999999
Q ss_pred CCCCcceEEeccCccccccccccccccccccccccccCCC-CCCceeEEEEeCCh------------HHHHHHHHHHhHh
Q 026513 118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGIS-QTEKYDVVIANILL------------NPLLQLADHIVSY 184 (237)
Q Consensus 118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~n~~~------------~~~~~~l~~~~~~ 184 (237)
+... ++.++++|+++.. ..+. ..++||+|++|||. ..+..++..+.++
T Consensus 268 l~~~--~v~~i~~D~~~~l-----------------~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~l 328 (396)
T PRK15128 268 LDLS--KAEFVRDDVFKLL-----------------RTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL 328 (396)
T ss_pred CCCC--cEEEEEccHHHHH-----------------HHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 8521 3788999987421 1111 14589999999994 2345667788899
Q ss_pred cCCCeEEEE-eccCCCCHHHHHHHHh
Q 026513 185 AKPGAVVGI-SGILSEQLPHIINRYS 209 (237)
Q Consensus 185 L~~gG~lii-s~~~~~~~~~~~~~~~ 209 (237)
|+|||.+++ ||...-+..++.+.+.
T Consensus 329 Lk~gG~lv~~scs~~~~~~~f~~~v~ 354 (396)
T PRK15128 329 LNPGGILLTFSCSGLMTSDLFQKIIA 354 (396)
T ss_pred cCCCeEEEEEeCCCcCCHHHHHHHHH
Confidence 999999986 4554444455555554
No 22
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.67 E-value=1.6e-15 Score=121.44 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=89.7
Q ss_pred CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.++++++.+++.+ +.++++|+.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~----i~~i~~d~~~-------------- 103 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN----VEIVNGRAED-------------- 103 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC----eEEEecchhh--------------
Confidence 4789999999999999998765 45789999999999999999999888764 8888998762
Q ss_pred ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
+...++||+|+++. ++.+..+++.+.++|+|||.+++.. ......++....
T Consensus 104 -------~~~~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~~-~~~~~~~~~~~~ 154 (181)
T TIGR00138 104 -------FQHEEQFDVITSRA-LASLNVLLELTLNLLKVGGYFLAYK-GKKYLDEIEEAK 154 (181)
T ss_pred -------ccccCCccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEEc-CCCcHHHHHHHH
Confidence 12256899999988 6667788899999999999999863 334444444443
No 23
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1e-14 Score=124.17 Aligned_cols=144 Identities=23% Similarity=0.294 Sum_probs=102.0
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCC-eEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGE-LFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL 115 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~-~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~ 115 (237)
...+.++++...- ++.+..+++.+........ +|||+|||||.+++.+++. +..+|+|+|+|+.+++.|++|+..
T Consensus 80 gl~~~v~~~vliP---r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 80 GLRFKVDEGVLIP---RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred ceeeeeCCCceec---CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence 3455555553222 4555555555332222222 7999999999999999976 556899999999999999999999
Q ss_pred cCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------------------
Q 026513 116 NNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------------------ 171 (237)
Q Consensus 116 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------------------ 171 (237)
+++. ++.++.+|+++ .. .++||+|++|||+
T Consensus 157 ~~l~----~~~~~~~dlf~--------------------~~--~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g 210 (280)
T COG2890 157 NGLV----RVLVVQSDLFE--------------------PL--RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGG 210 (280)
T ss_pred cCCc----cEEEEeeeccc--------------------cc--CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccC
Confidence 9984 36677778774 22 3499999999993
Q ss_pred ----HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 172 ----NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 172 ----~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
..+.+++..+...|+|||.+++.. -.++...+...+...
T Consensus 211 ~dGl~~~~~i~~~a~~~l~~~g~l~le~-g~~q~~~v~~~~~~~ 253 (280)
T COG2890 211 GDGLEVYRRILGEAPDILKPGGVLILEI-GLTQGEAVKALFEDT 253 (280)
T ss_pred ccHHHHHHHHHHhhHHHcCCCcEEEEEE-CCCcHHHHHHHHHhc
Confidence 234577899999999999998852 233445555555543
No 24
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.66 E-value=7.2e-15 Score=123.44 Aligned_cols=145 Identities=21% Similarity=0.266 Sum_probs=103.2
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhhcc---CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHH
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIK---GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNA 113 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~---~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~ 113 (237)
...+.+.|+..+. .+.+..+.+.+..... ++.+|||+|||+|.+++.+++. +..+++++|+|+.+++.|++|+
T Consensus 54 g~~~~v~~~vf~p---r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~ 130 (251)
T TIGR03704 54 GLRIAVDPGVFVP---RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL 130 (251)
T ss_pred CeEEEECCCCcCC---CccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 4567888886652 4444555544433322 2458999999999999998864 5568999999999999999999
Q ss_pred HHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH---------------------
Q 026513 114 ALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--------------------- 172 (237)
Q Consensus 114 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--------------------- 172 (237)
..++ ..++++|+.+.. ... ..++||+|++|||+.
T Consensus 131 ~~~~-------~~~~~~D~~~~l-----------------~~~-~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al 185 (251)
T TIGR03704 131 ADAG-------GTVHEGDLYDAL-----------------PTA-LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVAL 185 (251)
T ss_pred HHcC-------CEEEEeechhhc-----------------chh-cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHh
Confidence 8776 246678775311 000 135799999999852
Q ss_pred --------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 173 --------PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 173 --------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
.+..++..+.++|+|||++++..- ..+..++...+...
T Consensus 186 ~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~~~~~~v~~~l~~~ 231 (251)
T TIGR03704 186 DGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-ERQAPLAVEAFARA 231 (251)
T ss_pred cCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-cchHHHHHHHHHHC
Confidence 134678888899999999998633 45567777777664
No 25
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.66 E-value=5.1e-16 Score=115.03 Aligned_cols=103 Identities=28% Similarity=0.457 Sum_probs=84.3
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
|.+|||+|||+|.+++.+++.+..+++|+|+++.+++.|+.++...++.. ++.++++|..+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~---~~~~~~~D~~~~~-------------- 63 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDD---RVEVIVGDARDLP-------------- 63 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTT---TEEEEESHHHHHH--------------
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCc---eEEEEECchhhch--------------
Confidence 56899999999999999998877889999999999999999999988754 4889999987421
Q ss_pred ccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEe
Q 026513 151 HKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis 194 (237)
......+||+|++|||+.. +..++..+.++|+|||.+++.
T Consensus 64 ----~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 64 ----EPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp ----HTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----hhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 1234689999999999642 357799999999999999885
No 26
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.66 E-value=9.2e-16 Score=127.35 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=84.3
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
..+|.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|++++...+..+ ++++++|..+.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~----i~~v~~da~~l---------- 110 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQN----IEFVQGDAEDL---------- 110 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--S----EEEEE-BTTB-----------
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCC----eeEEEcCHHHh----------
Confidence 467889999999999999999865 34689999999999999999999887664 99999998642
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
..++.+||+|++...++.+ .+.++++.++|||||.+++-++......-+...+..+
T Consensus 111 ----------p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y 169 (233)
T PF01209_consen 111 ----------PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFY 169 (233)
T ss_dssp -----------S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-
T ss_pred ----------cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeee
Confidence 2347899999998876544 5679999999999999999887666555444444433
No 27
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.66 E-value=4.9e-15 Score=128.52 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=111.3
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
...+.+.|+.+|+.+......+........ ..++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|++|+..+
T Consensus 140 ~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~ 218 (315)
T PRK03522 140 GVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAEL 218 (315)
T ss_pred CEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence 456888898888877665555443332221 1256899999999999999999875 68999999999999999999999
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
++.+ ++++++|+.+.. . ....+||+|++|||+..+...+..+...++|++.+|+||.
T Consensus 219 ~l~~----v~~~~~D~~~~~------------------~-~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 219 GLTN----VQFQALDSTQFA------------------T-AQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred CCCc----eEEEEcCHHHHH------------------H-hcCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECC
Confidence 9864 889999986311 0 0134799999999987654444444555789999999999
Q ss_pred CCCCHHHHHHH
Q 026513 197 LSEQLPHIINR 207 (237)
Q Consensus 197 ~~~~~~~~~~~ 207 (237)
.....+++...
T Consensus 276 p~t~~rd~~~l 286 (315)
T PRK03522 276 AQTMAKDLAHL 286 (315)
T ss_pred cccchhHHhhc
Confidence 98888887665
No 28
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.66 E-value=3.4e-15 Score=131.43 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=122.3
Q ss_pred CceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 37 QATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
..+.+.++....-.+|.+...+.....+..... |++|||+.|-||.+++.++..|+.+|+.||.|..+++.|++|+..|
T Consensus 185 ~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LN 263 (393)
T COG1092 185 NGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELN 263 (393)
T ss_pred CCeEEEEecCCcccceeeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhc
Confidence 345667777767778889999999999888766 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHh
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSY 184 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~ 184 (237)
++... ++.++++|+++.. +.+ -..+.+||+|+++||- ..+..++..+.++
T Consensus 264 g~~~~--~~~~i~~Dvf~~l---------~~~-------~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~i 325 (393)
T COG1092 264 GLDGD--RHRFIVGDVFKWL---------RKA-------ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRL 325 (393)
T ss_pred CCCcc--ceeeehhhHHHHH---------HHH-------HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHH
Confidence 98643 4789999998422 111 1224599999999992 4456778899999
Q ss_pred cCCCeEEEEe-ccCCCCHHHHHHHHh
Q 026513 185 AKPGAVVGIS-GILSEQLPHIINRYS 209 (237)
Q Consensus 185 L~~gG~liis-~~~~~~~~~~~~~~~ 209 (237)
|+|||.++++ |...-....+.+.+.
T Consensus 326 L~pgG~l~~~s~~~~~~~~~f~~~i~ 351 (393)
T COG1092 326 LAPGGTLVTSSCSRHFSSDLFLEIIA 351 (393)
T ss_pred cCCCCEEEEEecCCccCHHHHHHHHH
Confidence 9999999997 444444444444443
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=2.3e-15 Score=126.27 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHH---hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCc
Q 026513 55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIK---FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDR 131 (237)
Q Consensus 55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~---~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d 131 (237)
....++..++...+.++.+|||+|||+|..+..+++ .+..+++|+|+|+.|++.|++++...+... ++.++++|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~---~v~~~~~d 117 (247)
T PRK15451 41 NIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPT---PVDVIEGD 117 (247)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC---CeEEEeCC
Confidence 334444444445567888999999999999988876 356789999999999999999998776653 47888888
Q ss_pred cccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccC
Q 026513 132 TFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~ 197 (237)
+.+ .. ...+|+|+++..++++ ..+++++.+.|+|||.+++++..
T Consensus 118 ~~~---------------------~~-~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 118 IRD---------------------IA-IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hhh---------------------CC-CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 752 11 2469999998877654 46899999999999999998643
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.65 E-value=2.1e-15 Score=117.26 Aligned_cols=106 Identities=25% Similarity=0.367 Sum_probs=87.4
Q ss_pred cCCCeEEEEcCcchHHHHHHH-Hh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAI-KF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la-~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.+.+|||+|||+|.++..++ +. +..+++|+|+|+.+++.|++.++..++.+ ++++++|+.+.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n----i~~~~~d~~~l----------- 66 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN----IEFIQGDIEDL----------- 66 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT----EEEEESBTTCG-----------
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc----cceEEeehhcc-----------
Confidence 357899999999999999999 43 56789999999999999999999988875 89999998741
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.... ..+||+|+++.++++. ..+++.+.+.|+++|.+++..+.
T Consensus 67 -------~~~~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 67 -------PQEL-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -------CGCS-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -------cccc-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 1111 2799999999987554 46799999999999999998665
No 31
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.65 E-value=2.3e-15 Score=120.90 Aligned_cols=102 Identities=26% Similarity=0.294 Sum_probs=86.2
Q ss_pred ccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
++++.+|||+|||+|..++.+++ .+..+|+++|+++.+++.|+++++.+++++ ++++.+|..+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~----i~~~~~d~~~------------ 106 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN----VTVVHGRAEE------------ 106 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC----EEEEeccHhh------------
Confidence 45688999999999999998886 467889999999999999999999998865 8888888752
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
....++||+|+++. ...+..++..+.++|+|||++++..
T Consensus 107 ---------~~~~~~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 107 ---------FGQEEKFDVVTSRA-VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ---------CCCCCCccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 11256899999986 4456788999999999999999864
No 32
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=1.7e-15 Score=127.37 Aligned_cols=141 Identities=17% Similarity=0.238 Sum_probs=108.2
Q ss_pred CCCCceeEEeCcccccCCCCchhHH--------HHHHHHHh--hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCH
Q 026513 34 PDVQATNIILNPGLAFGSGEHATTK--------LCLLLLRR--LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDP 103 (237)
Q Consensus 34 ~~~~~~~~~~~~~~~f~~g~~~~~~--------~~~~~l~~--~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~ 103 (237)
.....+..-++|.|.+.+...+... .-++.+.. .++||++|||||||.|.+++++|+.-..+|+|+++|+
T Consensus 26 l~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~ 105 (283)
T COG2230 26 LSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE 105 (283)
T ss_pred cchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH
Confidence 3344455566676666665554332 22222222 2689999999999999999999987567799999999
Q ss_pred HHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHH
Q 026513 104 QAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLA 178 (237)
Q Consensus 104 ~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l 178 (237)
++.+.+++.++..|+.. ++++...|+.+ + .++||.|++-.+++++ ..++
T Consensus 106 ~Q~~~~~~r~~~~gl~~---~v~v~l~d~rd---------------------~--~e~fDrIvSvgmfEhvg~~~~~~ff 159 (283)
T COG2230 106 EQLAYAEKRIAARGLED---NVEVRLQDYRD---------------------F--EEPFDRIVSVGMFEHVGKENYDDFF 159 (283)
T ss_pred HHHHHHHHHHHHcCCCc---ccEEEeccccc---------------------c--ccccceeeehhhHHHhCcccHHHHH
Confidence 99999999999999884 47777787763 2 4569999998888665 5789
Q ss_pred HHHhHhcCCCeEEEEeccCCCC
Q 026513 179 DHIVSYAKPGAVVGISGILSEQ 200 (237)
Q Consensus 179 ~~~~~~L~~gG~liis~~~~~~ 200 (237)
..+.+.|+|||.+++.++...+
T Consensus 160 ~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 160 KKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHHhhcCCCceEEEEEecCCC
Confidence 9999999999999998776544
No 33
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.63 E-value=1.4e-14 Score=132.74 Aligned_cols=120 Identities=21% Similarity=0.324 Sum_probs=92.5
Q ss_pred CCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
+.+|||+|||+|.+++.++. .+..+|+++|+|+.+++.|++|+..+++.+ ++.++.+|+.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~---~v~~~~~D~~~--------------- 200 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTD---RIQIIHSNWFE--------------- 200 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCcc---ceeeeecchhh---------------
Confidence 46899999999999998875 467789999999999999999999888764 47888898752
Q ss_pred cccccCCCCCCceeEEEEeCCh-----------------------------HHHHHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513 150 SHKIRGISQTEKYDVVIANILL-----------------------------NPLLQLADHIVSYAKPGAVVGISGILSEQ 200 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~-----------------------------~~~~~~l~~~~~~L~~gG~liis~~~~~~ 200 (237)
.. ..++||+|++|||+ ..+..++..+.++|+|||.+++. +-..+
T Consensus 201 -----~~-~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~~q 273 (506)
T PRK01544 201 -----NI-EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGFKQ 273 (506)
T ss_pred -----hC-cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECCch
Confidence 11 24589999999983 12345678888999999999985 44455
Q ss_pred HHHHHHHHhhc-cccc
Q 026513 201 LPHIINRYSEF-LEDI 215 (237)
Q Consensus 201 ~~~~~~~~~~~-~~~~ 215 (237)
...+...+... |..+
T Consensus 274 ~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 274 EEAVTQIFLDHGYNIE 289 (506)
T ss_pred HHHHHHHHHhcCCCce
Confidence 66666666543 4433
No 34
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.63 E-value=2.5e-14 Score=122.39 Aligned_cols=144 Identities=22% Similarity=0.272 Sum_probs=102.6
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHH-Hhhc-c-CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHH
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLL-RRLI-K-GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNA 113 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l-~~~~-~-~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~ 113 (237)
...+.++++..+ .++.+..+...+ .... . ++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|++|+
T Consensus 82 g~~f~v~~~vli---Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 82 GLEFFVNEHVLI---PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred CeEEEECCCCcC---CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 356777777544 244444444443 3322 2 2368999999999999999875 4578999999999999999999
Q ss_pred HHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh----------------------
Q 026513 114 ALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---------------------- 171 (237)
Q Consensus 114 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---------------------- 171 (237)
..+++.+ ++.++.+|+++. . +..+||+|++|||+
T Consensus 159 ~~~~~~~---~v~~~~~d~~~~--------------------~-~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~ 214 (284)
T TIGR00536 159 EKNQLEH---RVEFIQSNLFEP--------------------L-AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALV 214 (284)
T ss_pred HHcCCCC---cEEEEECchhcc--------------------C-cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhc
Confidence 9888764 488889997631 1 13489999999973
Q ss_pred ------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513 172 ------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS 209 (237)
Q Consensus 172 ------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~ 209 (237)
..+..++..+.++|+|||++++.- ...+...+...+.
T Consensus 215 gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~-g~~q~~~~~~~~~ 257 (284)
T TIGR00536 215 GGDDGLNILRQIIELAPDYLKPNGFLVCEI-GNWQQKSLKELLR 257 (284)
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCEEEEEE-CccHHHHHHHHHH
Confidence 134567888999999999998842 2334445555554
No 35
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.63 E-value=1.3e-14 Score=114.46 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=104.9
Q ss_pred hccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 67 LIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 67 ~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
.+.+|.+++|+|||+|.+++.++.. +..+++++|-++++++..++|+...++++ +.++.++..+.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n----~~vv~g~Ap~~---------- 96 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN----LEVVEGDAPEA---------- 96 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc----EEEEeccchHh----------
Confidence 3678999999999999999998854 67899999999999999999999999887 99999998642
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
+....+||.||.... ..+..+++.+...|+|||++++..+..+.....+..+++.
T Consensus 97 ----------L~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 97 ----------LPDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred ----------hcCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 222237999999998 7788999999999999999999999888888888888875
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.63 E-value=1.6e-15 Score=128.63 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=87.4
Q ss_pred EeCcccccCCCCchhHHH--------HHHHHHh--hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513 42 ILNPGLAFGSGEHATTKL--------CLLLLRR--LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQ 111 (237)
Q Consensus 42 ~~~~~~~f~~g~~~~~~~--------~~~~l~~--~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~ 111 (237)
.+.|.|.|+++..+.... .++.+.. .+++|.+|||||||.|.+++.+++....+|+|+.+|+...+.+++
T Consensus 24 ~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~ 103 (273)
T PF02353_consen 24 FLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARE 103 (273)
T ss_dssp TS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHH
T ss_pred hcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHH
Confidence 345566666655543322 2222222 267999999999999999999997634579999999999999999
Q ss_pred HHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcC
Q 026513 112 NAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAK 186 (237)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~ 186 (237)
.+...|+.+ ++.+...|..+ + ..+||.|++-.+++++ ..+++++.++|+
T Consensus 104 ~~~~~gl~~---~v~v~~~D~~~---------------------~--~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk 157 (273)
T PF02353_consen 104 RIREAGLED---RVEVRLQDYRD---------------------L--PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK 157 (273)
T ss_dssp HHHCSTSSS---TEEEEES-GGG--------------------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE
T ss_pred HHHhcCCCC---ceEEEEeeccc---------------------c--CCCCCEEEEEechhhcChhHHHHHHHHHHHhcC
Confidence 999999876 47777888762 2 3499999998877654 678999999999
Q ss_pred CCeEEEEeccCCC
Q 026513 187 PGAVVGISGILSE 199 (237)
Q Consensus 187 ~gG~liis~~~~~ 199 (237)
|||.+++..+...
T Consensus 158 pgG~~~lq~i~~~ 170 (273)
T PF02353_consen 158 PGGRLVLQTITHR 170 (273)
T ss_dssp TTEEEEEEEEEE-
T ss_pred CCcEEEEEecccc
Confidence 9999998766433
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=6.5e-15 Score=119.44 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=81.0
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...++.+ +.+...|+.+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~----v~~~~~d~~~-------------- 89 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDN----LHTAVVDLNN-------------- 89 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCc----ceEEecChhh--------------
Confidence 356799999999999999999885 479999999999999999998887764 6677777652
Q ss_pred ccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEE
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~lii 193 (237)
....++||+|+++..+++ ...+++.+.++|+|||++++
T Consensus 90 -------~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 90 -------LTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -------CCcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 112457999999887654 35789999999999999655
No 38
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.62 E-value=6.1e-15 Score=130.64 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=110.8
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
...+.+.|+.+|++.......+...+.... ..++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|++|++.+
T Consensus 200 g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~ 278 (374)
T TIGR02085 200 DVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQML 278 (374)
T ss_pred CEEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHc
Confidence 457889999888877665555443332221 1356799999999999999999765 68999999999999999999999
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHH-HHHHHHhHhcCCCeEEEEec
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~-~~l~~~~~~L~~gG~liis~ 195 (237)
++.+ +.++.+|+.+.. .. ...+||+|++|||+.... .+++.+. .++|++.+|+||
T Consensus 279 ~~~~----~~~~~~d~~~~~-----------------~~--~~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 279 GLDN----LSFAALDSAKFA-----------------TA--QMSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCCc----EEEEECCHHHHH-----------------Hh--cCCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEEe
Confidence 8864 888899975311 01 124699999999987654 4445554 579999999999
Q ss_pred cCCCCHHHHHHH
Q 026513 196 ILSEQLPHIINR 207 (237)
Q Consensus 196 ~~~~~~~~~~~~ 207 (237)
...+..+++...
T Consensus 335 ~p~TlaRDl~~L 346 (374)
T TIGR02085 335 NAQTMAKDIAEL 346 (374)
T ss_pred CHHHHHHHHHHh
Confidence 988888888776
No 39
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.3e-14 Score=129.87 Aligned_cols=153 Identities=23% Similarity=0.245 Sum_probs=124.4
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
...+.+.|+.+|+.+......+...+++.. ..++.++||+.||.|+|++.+|.. ..+|+|+|+++.+++.|++|++.|
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n 338 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAAN 338 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHc
Confidence 578899999999888777777666666553 346789999999999999999966 778999999999999999999999
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHH-HHHHHHhHhcCCCeEEEEec
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~-~~l~~~~~~L~~gG~liis~ 195 (237)
++.| ++|+.++..+... .......+|.|+.|||+.... .+++.+. .++|..++|+||
T Consensus 339 ~i~N----~~f~~~~ae~~~~-----------------~~~~~~~~d~VvvDPPR~G~~~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 339 GIDN----VEFIAGDAEEFTP-----------------AWWEGYKPDVVVVDPPRAGADREVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred CCCc----EEEEeCCHHHHhh-----------------hccccCCCCEEEECCCCCCCCHHHHHHHH-hcCCCcEEEEeC
Confidence 9997 8888898764221 111235899999999998887 5555554 569999999999
Q ss_pred cCCCCHHHHHHHHhhccc
Q 026513 196 ILSEQLPHIINRYSEFLE 213 (237)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~ 213 (237)
...+..+++......++.
T Consensus 397 NP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 397 NPATLARDLAILASTGYE 414 (432)
T ss_pred CHHHHHHHHHHHHhCCeE
Confidence 999999998888777653
No 40
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.61 E-value=2.3e-14 Score=136.24 Aligned_cols=138 Identities=16% Similarity=0.219 Sum_probs=103.0
Q ss_pred eeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC
Q 026513 39 TNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI 118 (237)
Q Consensus 39 ~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~ 118 (237)
..+.++......+|.....+....++... .+|++|||+|||+|.+++.++..|+.+|+++|+|+.+++.|++|+..|++
T Consensus 508 ~~f~v~~~~~~~tG~flDqr~~R~~~~~~-~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~ 586 (702)
T PRK11783 508 AKLLVNLTDYLDTGLFLDHRPTRRMIGQM-AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGL 586 (702)
T ss_pred EEEEEEcCCCCcceECHHHHHHHHHHHHh-cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 33444433334455555555555555544 35889999999999999999988888899999999999999999999988
Q ss_pred CCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh--------------HHHHHHHHHHhHh
Q 026513 119 GPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--------------NPLLQLADHIVSY 184 (237)
Q Consensus 119 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--------------~~~~~~l~~~~~~ 184 (237)
... +++++++|+++.. ... .++||+|++|||. ..+.+++..+.++
T Consensus 587 ~~~--~v~~i~~D~~~~l-----------------~~~--~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~l 645 (702)
T PRK11783 587 SGR--QHRLIQADCLAWL-----------------KEA--REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRL 645 (702)
T ss_pred Ccc--ceEEEEccHHHHH-----------------HHc--CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHH
Confidence 621 4889999986311 011 4689999999984 1235678888999
Q ss_pred cCCCeEEEEeccCC
Q 026513 185 AKPGAVVGISGILS 198 (237)
Q Consensus 185 L~~gG~liis~~~~ 198 (237)
|+|||.+++++...
T Consensus 646 L~~gG~l~~~~~~~ 659 (702)
T PRK11783 646 LRPGGTLYFSNNKR 659 (702)
T ss_pred cCCCCEEEEEeCCc
Confidence 99999999975543
No 41
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.61 E-value=2.8e-14 Score=115.61 Aligned_cols=150 Identities=16% Similarity=0.086 Sum_probs=101.1
Q ss_pred chhHHHHHHHHHhhc---cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC
Q 026513 54 HATTKLCLLLLRRLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 130 (237)
Q Consensus 54 ~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~ 130 (237)
++++..+.+.+...+ .++.+|||+|||+|.+++.++..++.+|+++|+++.+++.+++|++.+++.+ +.++++
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~----v~~~~~ 109 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGN----ARVVNT 109 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCc----EEEEEc
Confidence 566666544443322 3578999999999999997665667899999999999999999999988764 888899
Q ss_pred ccccccccccccccccccccccccCCCCCCceeEEEEeCCh-HH-HHHHHHHHhH--hcCCCeEEEEeccCCCCHHHHHH
Q 026513 131 RTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-NP-LLQLADHIVS--YAKPGAVVGISGILSEQLPHIIN 206 (237)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-~~-~~~~l~~~~~--~L~~gG~liis~~~~~~~~~~~~ 206 (237)
|+.+.. .. ...+||+|++|||+ .. ....++.+.. +|+|++.+|+++....+..++.
T Consensus 110 D~~~~l-----------------~~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~~~~~~- 169 (199)
T PRK10909 110 NALSFL-----------------AQ--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVENGLPTVP- 169 (199)
T ss_pred hHHHHH-----------------hh--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCCCCcccCC-
Confidence 876311 01 13479999999994 32 2344555544 4799999999876543322221
Q ss_pred HHhhccccceeeecCCEEEEEEEE
Q 026513 207 RYSEFLEDILVSEMDDWTCVSGKK 230 (237)
Q Consensus 207 ~~~~~~~~~~~~~~~~w~~~~~~~ 230 (237)
+.|+.+.....|.-...++++
T Consensus 170 ---~~~~~~~~k~yG~s~~~~~~~ 190 (199)
T PRK10909 170 ---ANWQLHREKVAGQVAYRLYIR 190 (199)
T ss_pred ---CccEEEEEecCCCEEEEEEEE
Confidence 123344444455544444554
No 42
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.61 E-value=3.8e-14 Score=118.60 Aligned_cols=136 Identities=23% Similarity=0.250 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc
Q 026513 55 ATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 132 (237)
Q Consensus 55 ~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~ 132 (237)
+.+..+...+... ...+.+|||+|||+|.++..++.. +..+++|+|+++.+++.|++++..+++.+ +.++.+|+
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~~~~~~d~ 146 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDN----VTFLQSDW 146 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCe----EEEEECch
Confidence 3343444443333 234568999999999999999875 56689999999999999999999888764 88888987
Q ss_pred ccccccccccccccccccccccCCCCCCceeEEEEeCChHH-----------------------------HHHHHHHHhH
Q 026513 133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----------------------------LLQLADHIVS 183 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----------------------------~~~~l~~~~~ 183 (237)
.+ ..+.++||+|++|||+.. +..++..+.+
T Consensus 147 ~~---------------------~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~ 205 (251)
T TIGR03534 147 FE---------------------PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR 205 (251)
T ss_pred hc---------------------cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence 63 122568999999998532 1256788999
Q ss_pred hcCCCeEEEEeccCCCCHHHHHHHHhhc-cccce
Q 026513 184 YAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL 216 (237)
Q Consensus 184 ~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~ 216 (237)
+|+|||.+++..- ..+..++.+.+... |..+.
T Consensus 206 ~L~~gG~~~~~~~-~~~~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 206 LLKPGGWLLLEIG-YDQGEAVRALFEAAGFADVE 238 (251)
T ss_pred hcccCCEEEEEEC-ccHHHHHHHHHHhCCCCceE
Confidence 9999999999632 23344555555543 54444
No 43
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.60 E-value=2.8e-14 Score=119.03 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=85.9
Q ss_pred hccCCCeEEEEcCcchHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513 67 LIKGGELFLDYGTGSGILGIAAIKF---GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG 143 (237)
Q Consensus 67 ~~~~~~~vLDlG~G~G~~~~~la~~---~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 143 (237)
...++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++...+... ++.++++|+.+
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~---~v~~~~~d~~~--------- 117 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEI---PVEILCNDIRH--------- 117 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC---CeEEEECChhh---------
Confidence 4467889999999999999988864 46789999999999999999987655432 37788888763
Q ss_pred cccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCC
Q 026513 144 VVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILS 198 (237)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~ 198 (237)
.. ...+|+|+++.++++. ..+++++.+.|+|||.+++++...
T Consensus 118 ------------~~-~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 118 ------------VE-IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred ------------CC-CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 11 2368999998887654 467999999999999999986543
No 44
>PLN02244 tocopherol O-methyltransferase
Probab=99.60 E-value=1.8e-14 Score=126.16 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=87.5
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.+ ++.++.+|..+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~---~v~~~~~D~~~~------------- 180 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSD---KVSFQVADALNQ------------- 180 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCC---ceEEEEcCcccC-------------
Confidence 4678999999999999999997645689999999999999999998887754 488888987631
Q ss_pred ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~ 196 (237)
..++++||+|++...++++ ..+++++.++|+|||.+++.++
T Consensus 181 -------~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 181 -------PFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred -------CCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 2236799999998877665 4679999999999999999654
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.60 E-value=1e-14 Score=118.69 Aligned_cols=122 Identities=12% Similarity=0.112 Sum_probs=94.7
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++..+++.+ +.++++|+.+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~----v~~~~~d~~~------------- 101 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTN----LRLLCGDAVE------------- 101 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCC----EEEEecCHHH-------------
Confidence 35779999999999999998865 56789999999999999999998887754 8888998721
Q ss_pred cccccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
.+....++++||+|+++.+... ...+++.+.++|+|||+++++........++...+...
T Consensus 102 ----~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 172 (202)
T PRK00121 102 ----VLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAE 172 (202)
T ss_pred ----HHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhC
Confidence 1111123568999999765321 35689999999999999999876666666777766653
No 46
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.60 E-value=2.9e-14 Score=121.08 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=110.3
Q ss_pred CceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 37 QATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
....+.++....-.+|.....+....++... ..|++|||+.|-+|.+++.++..|+.+|+.+|.|..+++.|++|+..|
T Consensus 91 ~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~-~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lN 169 (286)
T PF10672_consen 91 NGLKFRVDLTDGQKTGLFLDQRENRKWVRKY-AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALN 169 (286)
T ss_dssp TTEEEEEESSSSSSTSS-GGGHHHHHHHHHH-CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCcceEcHHHHhhHHHHHHH-cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 3466677766666788888888888888765 468999999999999999999989999999999999999999999999
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh---------HHHHHHHHHHhHhcCC
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---------NPLLQLADHIVSYAKP 187 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---------~~~~~~l~~~~~~L~~ 187 (237)
++... ++.+++.|+++.. ......++||+||++||- ..+.+++..+.++|+|
T Consensus 170 g~~~~--~~~~~~~Dvf~~l-----------------~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~ 230 (286)
T PF10672_consen 170 GLDLD--RHRFIQGDVFKFL-----------------KRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKP 230 (286)
T ss_dssp T-CCT--CEEEEES-HHHHH-----------------HHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEE
T ss_pred CCCcc--ceEEEecCHHHHH-----------------HHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 98633 4778899987421 111224689999999992 3456788999999999
Q ss_pred CeEEEEe-ccCCCCHHHHHHHHh
Q 026513 188 GAVVGIS-GILSEQLPHIINRYS 209 (237)
Q Consensus 188 gG~liis-~~~~~~~~~~~~~~~ 209 (237)
||.|+++ |-..-+...+.+.+.
T Consensus 231 gG~l~~~scs~~i~~~~l~~~~~ 253 (286)
T PF10672_consen 231 GGLLLTCSCSHHISPDFLLEAVA 253 (286)
T ss_dssp EEEEEEEE--TTS-HHHHHHHHH
T ss_pred CCEEEEEcCCcccCHHHHHHHHH
Confidence 9999875 433333444444443
No 47
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.59 E-value=1.3e-15 Score=125.29 Aligned_cols=103 Identities=22% Similarity=0.378 Sum_probs=83.1
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCc--ceEEeccCcccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKK--MKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
|++|||+|||+|.++..|++.| ++|+|+|+++.+++.|++....++..+.. .++.+.+.++.
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E--------------- 153 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVE--------------- 153 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchh---------------
Confidence 4789999999999999999997 66999999999999999997666654422 13444444443
Q ss_pred ccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEeccC
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis~~~ 197 (237)
.. .++||.|+|..+++|+. .+++.+.++|+|||.++++++-
T Consensus 154 ------~~--~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 154 ------GL--TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred ------hc--ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 11 45799999999998884 6899999999999999998664
No 48
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.59 E-value=3.1e-14 Score=106.11 Aligned_cols=106 Identities=20% Similarity=0.307 Sum_probs=85.9
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++++...+..+ +.++.+|....
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~----------- 81 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN----IVIVEGDAPEA----------- 81 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc----eEEEecccccc-----------
Confidence 346789999999999999999875 56789999999999999999998887654 67777775410
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
. . ....+||+|++......+.++++.+.+.|+|||.+++..+
T Consensus 82 ------~-~-~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 82 ------L-E-DSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ------C-h-hhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEec
Confidence 0 0 1135899999988777778899999999999999998743
No 49
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.59 E-value=7.1e-15 Score=104.13 Aligned_cols=92 Identities=26% Similarity=0.338 Sum_probs=73.9
Q ss_pred EEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccccc
Q 026513 75 LDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIR 154 (237)
Q Consensus 75 LDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 154 (237)
||+|||+|..+..+++.+..+++++|+++.+++.++++....+ +.+..+|..+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~-------~~~~~~d~~~l------------------- 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG-------VSFRQGDAEDL------------------- 54 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST-------EEEEESBTTSS-------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC-------chheeehHHhC-------------------
Confidence 8999999999999998888889999999999999999876543 44777877632
Q ss_pred CCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEE
Q 026513 155 GISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 155 ~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~lii 193 (237)
..++++||+|+++..+++. ..+++++.++|||||++++
T Consensus 55 -~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 55 -PFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -SS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred -ccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 2347899999999887654 5779999999999999986
No 50
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=4e-14 Score=117.30 Aligned_cols=108 Identities=18% Similarity=0.208 Sum_probs=86.5
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
++++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|++++...+..+ +.++.+|..+.
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----v~~~~~d~~~~---------- 108 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN----VELVHGNAMEL---------- 108 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc----eEEEEechhcC----------
Confidence 457889999999999999998865 34689999999999999999988777653 78888887531
Q ss_pred cccccccccCCCCCCceeEEEEeCChHH---HHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGILSE 199 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~~~L~~gG~liis~~~~~ 199 (237)
..++++||+|+++..+++ ..++++.+.+.|+|||.+++......
T Consensus 109 ----------~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 109 ----------PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred ----------CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 123578999999877654 35678999999999999998755433
No 51
>PRK14968 putative methyltransferase; Provisional
Probab=99.58 E-value=1.6e-13 Score=109.82 Aligned_cols=128 Identities=29% Similarity=0.402 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513 57 TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS 136 (237)
Q Consensus 57 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~ 136 (237)
+..+...+.. .++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++..+++.+. .+.++.+|..+
T Consensus 12 ~~~l~~~~~~--~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~--~~~~~~~d~~~-- 84 (188)
T PRK14968 12 SFLLAENAVD--KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNN--GVEVIRSDLFE-- 84 (188)
T ss_pred HHHHHHhhhc--cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCc--ceEEEeccccc--
Confidence 3444444432 56789999999999999999887 57799999999999999999988877541 15666777652
Q ss_pred ccccccccccccccccccCCCCCCceeEEEEeCChHH------------------------HHHHHHHHhHhcCCCeEEE
Q 026513 137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP------------------------LLQLADHIVSYAKPGAVVG 192 (237)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~------------------------~~~~l~~~~~~L~~gG~li 192 (237)
.+ ...+||+|++|+|+.. +..+++.+.++|+|||.++
T Consensus 85 ------------------~~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~ 145 (188)
T PRK14968 85 ------------------PF-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL 145 (188)
T ss_pred ------------------cc-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence 11 2348999999987532 3457899999999999988
Q ss_pred EeccCCCCHHHHHHHHhh
Q 026513 193 ISGILSEQLPHIINRYSE 210 (237)
Q Consensus 193 is~~~~~~~~~~~~~~~~ 210 (237)
+.........++...+..
T Consensus 146 ~~~~~~~~~~~l~~~~~~ 163 (188)
T PRK14968 146 LLQSSLTGEDEVLEYLEK 163 (188)
T ss_pred EEEcccCCHHHHHHHHHH
Confidence 753333334556666554
No 52
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.58 E-value=1.7e-14 Score=116.80 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=77.1
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++..+++. +.+...|...
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~-----v~~~~~d~~~--------------- 88 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP-----LRTDAYDINA--------------- 88 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC-----ceeEeccchh---------------
Confidence 45699999999999999999885 47999999999999999988877764 4444555431
Q ss_pred cccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEe
Q 026513 150 SHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis 194 (237)
.....+||+|+++.++++ ...+++.+.++|+|||++++.
T Consensus 89 ------~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 89 ------AALNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ------ccccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 111357999999887654 357899999999999996553
No 53
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.58 E-value=2.6e-14 Score=120.95 Aligned_cols=119 Identities=17% Similarity=0.146 Sum_probs=88.1
Q ss_pred CCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC
Q 026513 51 SGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD 130 (237)
Q Consensus 51 ~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~ 130 (237)
+|..+.+..++..+ .+.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++.... . ++.+..+
T Consensus 35 ~gg~~~~~~~l~~l--~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~----~i~~~~~ 106 (263)
T PTZ00098 35 SGGIEATTKILSDI--ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--N----KIEFEAN 106 (263)
T ss_pred CCchHHHHHHHHhC--CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--C----ceEEEEC
Confidence 33344444444443 24678899999999999999887654568999999999999999876531 1 3777788
Q ss_pred ccccccccccccccccccccccccCCCCCCceeEEEEeCChH-----HHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 131 RTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-----~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
|+.+ ...++++||+|++...+. ....+++++.++|+|||.++++++.
T Consensus 107 D~~~--------------------~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 107 DILK--------------------KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred Cccc--------------------CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 8752 122357899999966543 3356899999999999999998663
No 54
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.58 E-value=4.5e-14 Score=119.38 Aligned_cols=109 Identities=19% Similarity=0.238 Sum_probs=85.1
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHH---cCCCCCcceEEeccCcccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAAL---NNIGPKKMKLHLVPDRTFTASMNERVD 142 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~---~~~~~~~~~v~~~~~d~~~~~~~~~~~ 142 (237)
+.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.|+++... .... ++.++++|..+.
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~----~i~~~~~d~~~l------- 139 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYK----NIEWIEGDATDL------- 139 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCC----CeEEEEcccccC-------
Confidence 357889999999999999988865 3 46899999999999999877542 1222 377888887631
Q ss_pred ccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513 143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQ 200 (237)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~ 200 (237)
..++++||+|+++..+++. ..+++++.+.|||||.+++.++...+
T Consensus 140 -------------p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 140 -------------PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred -------------CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 2236789999998877654 56799999999999999998775443
No 55
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.57 E-value=2.8e-14 Score=120.14 Aligned_cols=104 Identities=16% Similarity=0.247 Sum_probs=85.3
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
..++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|++++...++.. ++.++++|..+.
T Consensus 42 ~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~---~v~~~~~d~~~l------------ 105 (255)
T PRK11036 42 PPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSD---NMQFIHCAAQDI------------ 105 (255)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCcc---ceEEEEcCHHHH------------
Confidence 3456799999999999999999885 579999999999999999998887653 477888887531
Q ss_pred cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis 194 (237)
.. ...++||+|+++.+++++ ..++..+.++|+|||++++.
T Consensus 106 ------~~-~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 106 ------AQ-HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred ------hh-hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 11 125689999999888765 46789999999999999875
No 56
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.57 E-value=2.9e-14 Score=128.77 Aligned_cols=153 Identities=22% Similarity=0.195 Sum_probs=111.7
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
...+.+.|+.+|+.+......+....+... +.++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|+..+
T Consensus 259 ~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~ 337 (431)
T TIGR00479 259 DLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELN 337 (431)
T ss_pred CEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHh
Confidence 457788888888766554444443333222 346689999999999999999977 467999999999999999999999
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCC-CCCCceeEEEEeCChHH-HHHHHHHHhHhcCCCeEEEEe
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGI-SQTEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~n~~~~~-~~~~l~~~~~~L~~gG~liis 194 (237)
++.+ ++++.+|+.+.. ... ..+.+||+|++|||... ...+++.+. .++|++.+|+|
T Consensus 338 ~~~n----v~~~~~d~~~~l-----------------~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 338 GIAN----VEFLAGTLETVL-----------------PKQPWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred CCCc----eEEEeCCHHHHH-----------------HHHHhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence 8875 889999975310 011 11357999999999765 355666555 47999999999
Q ss_pred ccCCCCHHHHHHHHhhccc
Q 026513 195 GILSEQLPHIINRYSEFLE 213 (237)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~ 213 (237)
|...+...++.......|.
T Consensus 396 c~p~tlard~~~l~~~gy~ 414 (431)
T TIGR00479 396 CNPATLARDLEFLCKEGYG 414 (431)
T ss_pred CCHHHHHHHHHHHHHCCee
Confidence 9876666666665554443
No 57
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.57 E-value=7.7e-14 Score=113.20 Aligned_cols=121 Identities=20% Similarity=0.258 Sum_probs=94.9
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+|||+|||+|.+++.+++. +..+|+++|+++.+++.++++++.+++.. ++.++.+|..+..
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~---~v~~~~~d~~~~l--------- 105 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLN---NIVLIKGEAPEIL--------- 105 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCC---CeEEEEechhhhH---------
Confidence 567889999999999999998864 34689999999999999999999888533 3777788765210
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 210 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~ 210 (237)
.. ..++||.|+++.....+..+++.+.+.|+|||.+++.....+...++...+++
T Consensus 106 --------~~--~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 160 (198)
T PRK00377 106 --------FT--INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN 160 (198)
T ss_pred --------hh--cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH
Confidence 01 13589999997766667788999999999999999866555566677766654
No 58
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.57 E-value=4.6e-14 Score=115.93 Aligned_cols=100 Identities=15% Similarity=0.223 Sum_probs=81.4
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++...++.+ +.++.+|..+.
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~----v~~~~~d~~~~---------- 140 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN----VIVIVGDGTQG---------- 140 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC----eEEEECCcccC----------
Confidence 4678999999999999999998763 3469999999999999999999988865 88888887531
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
.....+||+|+++.+... +.+.+.+.|+|||++++.
T Consensus 141 ----------~~~~~~fD~Ii~~~~~~~---~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 141 ----------WEPLAPYDRIYVTAAGPK---IPEALIDQLKEGGILVMP 176 (215)
T ss_pred ----------CcccCCCCEEEEcCCccc---ccHHHHHhcCcCcEEEEE
Confidence 122358999999886543 345678899999999985
No 59
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.56 E-value=2.1e-14 Score=124.33 Aligned_cols=103 Identities=19% Similarity=0.356 Sum_probs=83.4
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++...+... .+.++++|+.+.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~---~i~~~~~dae~l-------------- 192 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTS---TIEYLCTTAEKL-------------- 192 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCccc---ceeEEecCHHHh--------------
Confidence 46799999999999999998764 579999999999999998877655432 377888876421
Q ss_pred cccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~ 196 (237)
...+++||+|++..+++++ ..+++.+.++|+|||.++++.+
T Consensus 193 ------~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 193 ------ADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred ------hhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 1225789999998888776 4689999999999999999754
No 60
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.55 E-value=1.2e-13 Score=112.73 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=81.4
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++..+++.+ +++++.+|..+
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~---~v~~~~~d~~~----------- 135 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWG---VVEVYHGDGKR----------- 135 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC---cEEEEECCccc-----------
Confidence 457889999999999999888864 2 4689999999999999999999888754 47788888753
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
.+....+||+|+++.....+ .+.+.+.|+|||++++.
T Consensus 136 ---------~~~~~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 136 ---------GLEKHAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIP 172 (205)
T ss_pred ---------CCccCCCccEEEEccCcchh---hHHHHHhcCcCcEEEEE
Confidence 12224689999999876544 35688899999999885
No 61
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.55 E-value=5e-14 Score=109.90 Aligned_cols=141 Identities=21% Similarity=0.322 Sum_probs=102.3
Q ss_pred cccCCCCchhHHHHHHHHHhhc-----cCCC-eEEEEcCcchHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHcCCC
Q 026513 47 LAFGSGEHATTKLCLLLLRRLI-----KGGE-LFLDYGTGSGILGIAAIKFGAAM-SVGADIDPQAIKSAHQNAALNNIG 119 (237)
Q Consensus 47 ~~f~~g~~~~~~~~~~~l~~~~-----~~~~-~vLDlG~G~G~~~~~la~~~~~~-v~~vD~s~~~i~~a~~~~~~~~~~ 119 (237)
..|+ ...+..+..++...+ .+.. +|||+|||+|.+...|++.++.. .+|+|+|+.+++.|+..++.++.+
T Consensus 41 vWFg---~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~ 117 (227)
T KOG1271|consen 41 VWFG---EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS 117 (227)
T ss_pred eecC---CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC
Confidence 5666 344555666665432 2333 99999999999999999887654 999999999999999999999998
Q ss_pred CCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEE---------eCC--hHHHHHHHHHHhHhcCCC
Q 026513 120 PKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIA---------NIL--LNPLLQLADHIVSYAKPG 188 (237)
Q Consensus 120 ~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~---------n~~--~~~~~~~l~~~~~~L~~g 188 (237)
+ .+.|.+.|+.++.. ..++||+|.- .|. -....-++..+.++|+||
T Consensus 118 n---~I~f~q~DI~~~~~--------------------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~ 174 (227)
T KOG1271|consen 118 N---EIRFQQLDITDPDF--------------------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPG 174 (227)
T ss_pred c---ceeEEEeeccCCcc--------------------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCC
Confidence 7 58898999875321 1345666643 221 111234578889999999
Q ss_pred eEEEE-eccCCCCHHHHHHHHhhc-cccc
Q 026513 189 AVVGI-SGILSEQLPHIINRYSEF-LEDI 215 (237)
Q Consensus 189 G~lii-s~~~~~~~~~~~~~~~~~-~~~~ 215 (237)
|+++| ||.++. .++...+..+ |...
T Consensus 175 gifvItSCN~T~--dELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 175 GIFVITSCNFTK--DELVEEFENFNFEYL 201 (227)
T ss_pred cEEEEEecCccH--HHHHHHHhcCCeEEE
Confidence 99988 587776 7888888765 5443
No 62
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.55 E-value=8.9e-14 Score=122.70 Aligned_cols=160 Identities=9% Similarity=0.007 Sum_probs=109.5
Q ss_pred eeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC
Q 026513 39 TNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI 118 (237)
Q Consensus 39 ~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~ 118 (237)
..+.+.|+.+|+.+......++..+.......+.++||++||+|.+++.+++. +.+|+|+|+++.+++.|++|+..+++
T Consensus 175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~ 253 (362)
T PRK05031 175 FIYRQVENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI 253 (362)
T ss_pred EEEEeCCCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 56888888888876655555444444322222357999999999999988876 56899999999999999999999998
Q ss_pred CCCcceEEeccCccccccccccccccccccccccccCCC----CCCceeEEEEeCChHHH-HHHHHHHhHhcCCCeEEEE
Q 026513 119 GPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGIS----QTEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 119 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~fD~I~~n~~~~~~-~~~l~~~~~~L~~gG~lii 193 (237)
.+ +.++.+|+.+.. ..+... ....... ...+||+|+.|||+..+ .++++.+. ++++.+|+
T Consensus 254 ~~----v~~~~~d~~~~l-----~~~~~~---~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~---~~~~ivyv 318 (362)
T PRK05031 254 DN----VQIIRMSAEEFT-----QAMNGV---REFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQ---AYERILYI 318 (362)
T ss_pred Cc----EEEEECCHHHHH-----HHHhhc---ccccccccccccCCCCCEEEECCCCCCCcHHHHHHHH---ccCCEEEE
Confidence 75 889999986421 000000 0000000 02369999999998654 34445554 37999999
Q ss_pred eccCCCCHHHHHHHHhhccccc
Q 026513 194 SGILSEQLPHIINRYSEFLEDI 215 (237)
Q Consensus 194 s~~~~~~~~~~~~~~~~~~~~~ 215 (237)
||...+-.+++..... .|...
T Consensus 319 SC~p~tlarDl~~L~~-gY~l~ 339 (362)
T PRK05031 319 SCNPETLCENLETLSQ-THKVE 339 (362)
T ss_pred EeCHHHHHHHHHHHcC-CcEEE
Confidence 9998777777776543 44433
No 63
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=4.2e-13 Score=113.99 Aligned_cols=148 Identities=20% Similarity=0.247 Sum_probs=100.4
Q ss_pred eEEeCcccccCCCCchhHHHHHHHHHhh--ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 40 NIILNPGLAFGSGEHATTKLCLLLLRRL--IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 40 ~~~~~~~~~f~~g~~~~~~~~~~~l~~~--~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
.+.++++... ..+.+..+.+.+... ..++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++...
T Consensus 79 ~~~~~~~~li---pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~ 155 (275)
T PRK09328 79 DFKVSPGVLI---PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG 155 (275)
T ss_pred EEEECCCcee---CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC
Confidence 4455554222 144444555544322 346779999999999999999875 4678999999999999999998822
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH------------------------
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN------------------------ 172 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~------------------------ 172 (237)
... ++.++.+|+.+ ....++||+|++|||+.
T Consensus 156 ~~~----~i~~~~~d~~~---------------------~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g 210 (275)
T PRK09328 156 LGA----RVEFLQGDWFE---------------------PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGG 210 (275)
T ss_pred CCC----cEEEEEccccC---------------------cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCC
Confidence 222 37888888753 11246899999999842
Q ss_pred -----HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccce
Q 026513 173 -----PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDIL 216 (237)
Q Consensus 173 -----~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~ 216 (237)
.+..++..+.++|+|||++++.. -..+..++...+... |..++
T Consensus 211 ~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~~~~~~~l~~~gf~~v~ 259 (275)
T PRK09328 211 EDGLDFYRRIIEQAPRYLKPGGWLLLEI-GYDQGEAVRALLAAAGFADVE 259 (275)
T ss_pred CCHHHHHHHHHHHHHHhcccCCEEEEEE-CchHHHHHHHHHHhCCCceeE
Confidence 12456788889999999999953 223344555555543 54443
No 64
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.55 E-value=5.5e-14 Score=113.74 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=94.0
Q ss_pred CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
...++||+|||+|.++..++.. +...++|+|+++.+++.|++++...++.+ +.++++|+.+..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~n----i~~i~~d~~~~~------------ 79 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKN----LHVLCGDANELL------------ 79 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCC----EEEEccCHHHHH------------
Confidence 4568999999999999988864 67789999999999999999999888875 889999986311
Q ss_pred ccccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
....+++.+|.|++|.|-.+ ...+++.+.+.|+|||.+++.........++...+...
T Consensus 80 -----~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 80 -----DKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred -----HhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 12223468999999876321 14689999999999999999765555555666666543
No 65
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.54 E-value=2e-13 Score=115.96 Aligned_cols=105 Identities=25% Similarity=0.359 Sum_probs=84.7
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.+|.+|||+|||+|..+..+++. +. .+|+++|+++.+++.|+++....++.+ +.++.+|+.+.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~----v~~~~~d~~~l---------- 140 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN----VEFRLGEIEAL---------- 140 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC----EEEEEcchhhC----------
Confidence 467899999999999988877654 43 579999999999999999988877654 77888886521
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~ 196 (237)
..++++||+|+++..+++. ..+++++.++|+|||.++++++
T Consensus 141 ----------~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 141 ----------PVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred ----------CCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1235689999999876543 4689999999999999999755
No 66
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.54 E-value=1.7e-13 Score=114.98 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=84.5
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
++.+|||+|||+|.++..++..+ .+++++|+|+.+++.|+++... ..++++|+.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~---------~~~~~~d~~~--------------- 96 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA---------DHYLAGDIES--------------- 96 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC---------CCEEEcCccc---------------
Confidence 46789999999999998888764 6799999999999999876421 2356677642
Q ss_pred cccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
...++.+||+|+++.++++. ..++.++.++|+|||.++++.+......++...+
T Consensus 97 -----~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~ 153 (251)
T PRK10258 97 -----LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAW 153 (251)
T ss_pred -----CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHH
Confidence 11235689999999987654 4679999999999999999987766666655544
No 67
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.54 E-value=1.4e-13 Score=120.96 Aligned_cols=155 Identities=11% Similarity=0.036 Sum_probs=108.8
Q ss_pred eeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC
Q 026513 39 TNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI 118 (237)
Q Consensus 39 ~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~ 118 (237)
..+.+.|+.+|+.+......++...++..-..+.+|||+|||+|.+++.+++. +.+|+|+|+++.+++.|++|+..+++
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~ 244 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI 244 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 57888888888776655555554444332222347999999999999988876 46899999999999999999999998
Q ss_pred CCCcceEEeccCccccccccccccccccccccccc---cCCC-CCCceeEEEEeCChHHH-HHHHHHHhHhcCCCeEEEE
Q 026513 119 GPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKI---RGIS-QTEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 119 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~fD~I~~n~~~~~~-~~~l~~~~~~L~~gG~lii 193 (237)
.+ +.++.+|+.+... ..... ..+ .... ...+||+|+.|||+..+ ..+++.+. +|++.+|+
T Consensus 245 ~~----v~~~~~d~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~---~~~~ivYv 309 (353)
T TIGR02143 245 DN----VQIIRMSAEEFTQ-----AMNGV---REFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQ---AYERILYI 309 (353)
T ss_pred Cc----EEEEEcCHHHHHH-----HHhhc---cccccccccccccCCCCEEEECCCCCCCcHHHHHHHH---cCCcEEEE
Confidence 75 8889999863210 00000 000 0000 01248999999997664 34445444 48999999
Q ss_pred eccCCCCHHHHHHHHh
Q 026513 194 SGILSEQLPHIINRYS 209 (237)
Q Consensus 194 s~~~~~~~~~~~~~~~ 209 (237)
||...+..+++.....
T Consensus 310 sC~p~tlaRDl~~L~~ 325 (353)
T TIGR02143 310 SCNPETLKANLEQLSE 325 (353)
T ss_pred EcCHHHHHHHHHHHhc
Confidence 9999888888887653
No 68
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.54 E-value=2.7e-13 Score=118.26 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=88.7
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.++|.+|||+|||+|.+++.++.. ..+++|+|+++.+++.|++|++..++.+ +.+..+|..+.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~----i~~~~~D~~~l------------ 242 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED----FFVKRGDATKL------------ 242 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC----CeEEecchhcC------------
Confidence 467889999999999999887776 4569999999999999999999888875 67778887631
Q ss_pred cccccccCCCCCCceeEEEEeCChH------------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHH
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLN------------PLLQLADHIVSYAKPGAVVGISGILSEQLPHI 204 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~------------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~ 204 (237)
....++||+|++|||+. .+.+++..+.+.|+|||++++......+..++
T Consensus 243 --------~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~ 303 (329)
T TIGR01177 243 --------PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESL 303 (329)
T ss_pred --------CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHH
Confidence 11246899999999851 24678999999999999998864333344443
No 69
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.53 E-value=4.7e-14 Score=125.18 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=99.1
Q ss_pred CCCCCceeEEeCcccccCCCCchhHH-------HHHHHH-Hh-hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCH
Q 026513 33 PPDVQATNIILNPGLAFGSGEHATTK-------LCLLLL-RR-LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDP 103 (237)
Q Consensus 33 ~~~~~~~~~~~~~~~~f~~g~~~~~~-------~~~~~l-~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~ 103 (237)
......+.+.+++.|.|++|.+.... ..+..+ +. .+++|.+|||+|||+|.++..+++....+|+|+|+|+
T Consensus 121 d~~n~~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~ 200 (383)
T PRK11705 121 DLGNDLFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA 200 (383)
T ss_pred CCcHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH
Confidence 34444566778888999888874221 111222 11 1468899999999999999999876456899999999
Q ss_pred HHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHH
Q 026513 104 QAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLA 178 (237)
Q Consensus 104 ~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l 178 (237)
.+++.|++++. ++ .+.+...|.. .. .++||.|++...+++. ..++
T Consensus 201 ~~l~~A~~~~~--~l-----~v~~~~~D~~---------------------~l--~~~fD~Ivs~~~~ehvg~~~~~~~l 250 (383)
T PRK11705 201 EQQKLAQERCA--GL-----PVEIRLQDYR---------------------DL--NGQFDRIVSVGMFEHVGPKNYRTYF 250 (383)
T ss_pred HHHHHHHHHhc--cC-----eEEEEECchh---------------------hc--CCCCCEEEEeCchhhCChHHHHHHH
Confidence 99999998874 22 2566666654 12 4689999998877654 5789
Q ss_pred HHHhHhcCCCeEEEEecc
Q 026513 179 DHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 179 ~~~~~~L~~gG~liis~~ 196 (237)
+.+.++|+|||.+++..+
T Consensus 251 ~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 251 EVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred HHHHHHcCCCcEEEEEEc
Confidence 999999999999999755
No 70
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.53 E-value=1.5e-13 Score=112.66 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=81.5
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+|||+|||+|+++..+++. + ..+|+++|+++.+++.|++++...++.+ +.++.+|...
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~----v~~~~gd~~~----------- 138 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN----VEVIVGDGTL----------- 138 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC----eEEEECCccc-----------
Confidence 468899999999999999988875 3 3689999999999999999999888764 8888999753
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
.+....+||+|+++..... +...+.+.|+|||.+++.
T Consensus 139 ---------~~~~~~~fD~I~~~~~~~~---~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 139 ---------GYEENAPYDRIYVTAAGPD---IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ---------CCCcCCCcCEEEECCCccc---chHHHHHhhCCCcEEEEE
Confidence 1223578999999875543 345677889999999884
No 71
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=5e-13 Score=120.47 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=90.1
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
..+|.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...++. +.++++|..+.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-----~~~~~~D~~~~----------- 305 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-----ATVIVGDARDP----------- 305 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEcCcccc-----------
Confidence 4678999999999999999988763 368999999999999999999988764 56778887531
Q ss_pred ccccccccCCCCCCceeEEEEeCChHH-------------------------HHHHHHHHhHhcCCCeEEEEecc---CC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNP-------------------------LLQLADHIVSYAKPGAVVGISGI---LS 198 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~-------------------------~~~~l~~~~~~L~~gG~liis~~---~~ 198 (237)
......++||.|++|+|... ..+++..+.++|+|||++++++. ..
T Consensus 306 -------~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 306 -------AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred -------hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 01122468999999998421 23678999999999999998743 23
Q ss_pred CCHHHHHHHHhh
Q 026513 199 EQLPHIINRYSE 210 (237)
Q Consensus 199 ~~~~~~~~~~~~ 210 (237)
+....+...+..
T Consensus 379 Ene~~v~~~l~~ 390 (427)
T PRK10901 379 ENEQQIKAFLAR 390 (427)
T ss_pred hCHHHHHHHHHh
Confidence 334444444444
No 72
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.51 E-value=3.6e-13 Score=111.05 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=83.2
Q ss_pred CeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 72 ELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
++|||+|||+|.++..+++. +..+++|+|+|+.+++.+++++...++.. ++.++..|..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~---~i~~~~~d~~~---------------- 61 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQG---RIRIFYRDSAK---------------- 61 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCc---ceEEEeccccc----------------
Confidence 37999999999999988865 45789999999999999999998887765 47788888642
Q ss_pred ccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccC
Q 026513 151 HKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~ 197 (237)
... .++||+|++..++++. ..+++.+.++|+|||.+++.++.
T Consensus 62 ----~~~-~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 62 ----DPF-PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred ----CCC-CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 111 3589999997766554 46899999999999999997653
No 73
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.51 E-value=8.8e-13 Score=104.99 Aligned_cols=132 Identities=15% Similarity=0.187 Sum_probs=92.0
Q ss_pred CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513 72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH 151 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 151 (237)
.++||+|||.|.++..|+.. ..+++++|+|+.+++.|++.+.. .++ +.+++.|+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~~~----V~~~~~dvp------------------ 99 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--LPH----VEWIQADVP------------------ 99 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SS----EEEEES-TT------------------
T ss_pred ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--CCC----eEEEECcCC------------------
Confidence 58999999999999999988 57799999999999999998764 343 889899876
Q ss_pred cccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEEeccC---------CCCHHHHHHHHhhccccce
Q 026513 152 KIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGIL---------SEQLPHIINRYSEFLEDIL 216 (237)
Q Consensus 152 ~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~liis~~~---------~~~~~~~~~~~~~~~~~~~ 216 (237)
...+.++||+|++..+++.+ ..++..+...|+|||.|++.... ......+...+.+.+..++
T Consensus 100 ---~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~ 176 (201)
T PF05401_consen 100 ---EFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVE 176 (201)
T ss_dssp ---T---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEE
T ss_pred ---CCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhhee
Confidence 34457899999998876544 45789999999999999995332 2246677777777665554
Q ss_pred ee------ecCCEEEEEEEEc
Q 026513 217 VS------EMDDWTCVSGKKK 231 (237)
Q Consensus 217 ~~------~~~~w~~~~~~~~ 231 (237)
-. ...+|....|+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 177 RVECRGGSPNEDCLLARFRNP 197 (201)
T ss_dssp EEEEE-SSTTSEEEEEEEE--
T ss_pred EEEEcCCCCCCceEeeeecCC
Confidence 32 2445766666654
No 74
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=1.2e-13 Score=116.29 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=77.0
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++. + +.++++|..+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~-------~~~~~~d~~~------------- 83 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G-------VDARTGDVRD------------- 83 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C-------CcEEEcChhh-------------
Confidence 56789999999999999998875 456899999999999998753 2 4566777642
Q ss_pred cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis 194 (237)
+.+.++||+|+++.+++++ ..++.++.+.|+|||.+++.
T Consensus 84 --------~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 84 --------WKPKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred --------CCCCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 2235689999999988776 46789999999999999986
No 75
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.50 E-value=1e-12 Score=106.35 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=88.2
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
..++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++...++.+ ++++.+|..+.
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~----v~~~~~d~~~~----------- 102 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN----VEVIEGSAPEC----------- 102 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC----eEEEECchHHH-----------
Confidence 357889999999999999998864 45789999999999999999999888754 78888886521
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS 209 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~ 209 (237)
+... ...+|.++.+.. .....++..+.+.|+|||.+++.....+...++...+.
T Consensus 103 ------~~~~--~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 156 (196)
T PRK07402 103 ------LAQL--APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLA 156 (196)
T ss_pred ------HhhC--CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHH
Confidence 0011 234677777653 34567889999999999999998665444444444444
No 76
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.50 E-value=2.7e-13 Score=108.72 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=78.5
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
++.++||+|||.|..+++||+.|.. |+++|+|+.+++.+++.+...+++ +.....|+.+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~l~-----i~~~~~Dl~~--------------- 88 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEGLD-----IRTRVADLND--------------- 88 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT-T-----EEEEE-BGCC---------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcCce-----eEEEEecchh---------------
Confidence 3458999999999999999999876 999999999999999998888876 7777787653
Q ss_pred cccccCCCCCCceeEEEEeCChH-----HHHHHHHHHhHhcCCCeEEEEecc
Q 026513 150 SHKIRGISQTEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~-----~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
....+.||+|++..++. ....+++.+...++|||++++.++
T Consensus 89 ------~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 89 ------FDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp ------BS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ------ccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 22246899999876653 345789999999999999888544
No 77
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.50 E-value=3.8e-13 Score=111.86 Aligned_cols=121 Identities=13% Similarity=0.222 Sum_probs=92.5
Q ss_pred HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513 58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA 135 (237)
Q Consensus 58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~ 135 (237)
..++..+.+. .++++|||+|||+|+-++.++.. +..+++++|+++.+++.|++++..+++.+ +++++.+|+.+.
T Consensus 57 g~~L~~l~~~-~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~---~i~~~~gda~~~ 132 (234)
T PLN02781 57 GLFLSMLVKI-MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDH---KINFIQSDALSA 132 (234)
T ss_pred HHHHHHHHHH-hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEEccHHHH
Confidence 3344444333 45679999999999988877753 46789999999999999999999999875 588889998631
Q ss_pred cccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
. ..+ ..-.+.++||+|+++..-..+..++..+.++|+|||.+++...
T Consensus 133 L---------~~l-----~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 133 L---------DQL-----LNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred H---------HHH-----HhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 1 000 0001146899999998878888899999999999999998543
No 78
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.50 E-value=2e-13 Score=118.67 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=80.2
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.+|.+|||+|||+|.++..++..+...|+|+|+|+.++..++......+... ++.++.+|+.+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~---~i~~~~~d~e~-------------- 183 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQ---RAHLLPLGIEQ-------------- 183 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCC---CeEEEeCCHHH--------------
Confidence 4578999999999999999998887789999999999876554433222111 37777877652
Q ss_pred ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~ 196 (237)
+...++||+|+|...+++. ..+++++.+.|+|||.++++++
T Consensus 184 -------lp~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 184 -------LPALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred -------CCCcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 1125689999998887664 4679999999999999998643
No 79
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=2.9e-13 Score=123.65 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=83.6
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
+.++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++....+ . ++.+..+|+.+.
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--~---~v~~~~~d~~~~------------ 326 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--C---SVEFEVADCTKK------------ 326 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--C---ceEEEEcCcccC------------
Confidence 35678999999999999998887645689999999999999998875322 1 378888887631
Q ss_pred cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~ 196 (237)
..++++||+|+|...+.++ ..+++++.++|+|||.++++++
T Consensus 327 --------~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 327 --------TYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred --------CCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 1235689999998777654 4689999999999999999865
No 80
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.7e-13 Score=109.19 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=83.9
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
++++.+|||||||+|+.+..+++.. .+|+.+|..+...+.|++|+...+..| +.+.++|...
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~n----V~v~~gDG~~------------- 131 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYEN----VTVRHGDGSK------------- 131 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCc----eEEEECCccc-------------
Confidence 5789999999999999999999984 389999999999999999999999986 8899999874
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
-+....+||.|++....... -+.+.+.|++||++++-
T Consensus 132 -------G~~~~aPyD~I~Vtaaa~~v---P~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 132 -------GWPEEAPYDRIIVTAAAPEV---PEALLDQLKPGGRLVIP 168 (209)
T ss_pred -------CCCCCCCcCEEEEeeccCCC---CHHHHHhcccCCEEEEE
Confidence 23345799999998754433 35577889999999983
No 81
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.49 E-value=8.9e-13 Score=119.11 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=101.4
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
..+|.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++...|+.+ +.++++|..+..-.
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~----v~~~~~D~~~~~~~------- 318 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS----IKILAADSRNLLEL------- 318 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe----EEEEeCChhhcccc-------
Confidence 457899999999999999998865 34689999999999999999999999875 88888887631100
Q ss_pred cccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEec-cC-C
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISG-IL-S 198 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis~-~~-~ 198 (237)
.....++||.|++|+|.. ...+++..+.++|||||+|++++ .. .
T Consensus 319 ---------~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 319 ---------KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred ---------cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 001245899999998731 13577999999999999998873 33 2
Q ss_pred -CCHHHHHHHHhhc--cccce--------eeecCCEEEEEEEEc
Q 026513 199 -EQLPHIINRYSEF--LEDIL--------VSEMDDWTCVSGKKK 231 (237)
Q Consensus 199 -~~~~~~~~~~~~~--~~~~~--------~~~~~~w~~~~~~~~ 231 (237)
+....+...++.+ |+... ....+++..+.++|+
T Consensus 390 ~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~ 433 (434)
T PRK14901 390 AENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRKK 433 (434)
T ss_pred hhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEeC
Confidence 3333444444544 43221 113466666666654
No 82
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.49 E-value=2.3e-13 Score=119.59 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=101.2
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN 117 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~ 117 (237)
...+.+.|+.+|+.+......++..++......+..+||+.||.|.+++.+|.. +.+|+|+|+++.+++.|++|+..|+
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~ 242 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNG 242 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcC
Confidence 467889999999887776666665555443222338999999999999999987 6779999999999999999999999
Q ss_pred CCCCcceEEeccCccccccccccccccccccccc-cccC-CCCCCceeEEEEeCChHHHHH-HHHHHhHhcCCCeEEEEe
Q 026513 118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH-KIRG-ISQTEKYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~fD~I~~n~~~~~~~~-~l~~~~~~L~~gG~liis 194 (237)
+.| ++|+.++..+.. ..+. ...+. .+.. ......+|+|+.|||+..+.. ++..+. ++.-.+|+|
T Consensus 243 i~n----~~f~~~~~~~~~-----~~~~-~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~---~~~~ivYvS 309 (352)
T PF05958_consen 243 IDN----VEFIRGDAEDFA-----KALA-KAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK---KLKRIVYVS 309 (352)
T ss_dssp --S----EEEEE--SHHCC-----CHHC-CS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH---HSSEEEEEE
T ss_pred CCc----ceEEEeeccchh-----HHHH-hhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh---cCCeEEEEE
Confidence 997 888877653211 0000 00000 0000 011347999999999988764 344333 346799999
Q ss_pred ccCCCCHHHHHHHHhhccccce
Q 026513 195 GILSEQLPHIINRYSEFLEDIL 216 (237)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~ 216 (237)
|...+-.+++.... +.|....
T Consensus 310 CnP~tlaRDl~~L~-~~y~~~~ 330 (352)
T PF05958_consen 310 CNPATLARDLKILK-EGYKLEK 330 (352)
T ss_dssp S-HHHHHHHHHHHH-CCEEEEE
T ss_pred CCHHHHHHHHHHHh-hcCEEEE
Confidence 99988888887754 4554443
No 83
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.49 E-value=2.2e-13 Score=117.60 Aligned_cols=104 Identities=17% Similarity=0.105 Sum_probs=77.7
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.+|++|||+|||+|.++..++..+...|+|+|.|+.++..++......+... ++.+...++.+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~---~v~~~~~~ie~-------------- 182 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDK---RAILEPLGIEQ-------------- 182 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCC---CeEEEECCHHH--------------
Confidence 4678999999999999999888887789999999999877544322211111 25555665531
Q ss_pred ccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEecc
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis~~ 196 (237)
+....+||+|+|+.++++.. .++.++.+.|+|||.|++.++
T Consensus 183 -------lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 183 -------LHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -------CCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 22235899999999887653 678999999999999998643
No 84
>PRK00811 spermidine synthase; Provisional
Probab=99.49 E-value=1.7e-12 Score=110.87 Aligned_cols=144 Identities=12% Similarity=0.132 Sum_probs=99.3
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCC-CcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGP-KKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+..++||++|||+|..+..++++ +..+|+++|+++.+++.|++.+...+... ..-+++++.+|.....
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l---------- 144 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV---------- 144 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH----------
Confidence 45679999999999999998876 67889999999999999999876432110 1125788889876311
Q ss_pred ccccccccCCCCCCceeEEEEeCC--h----HH-HHHHHHHHhHhcCCCeEEEEecc---C-CCCHHHHHHHHhhccccc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANIL--L----NP-LLQLADHIVSYAKPGAVVGISGI---L-SEQLPHIINRYSEFLEDI 215 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~--~----~~-~~~~l~~~~~~L~~gG~liis~~---~-~~~~~~~~~~~~~~~~~~ 215 (237)
.. ..++||+|+++.+ . +. ..++++.+.+.|+|||++++..- . ......+...+++.|..+
T Consensus 145 -------~~--~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v 215 (283)
T PRK00811 145 -------AE--TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIV 215 (283)
T ss_pred -------hh--CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCE
Confidence 01 2568999999752 1 11 25778999999999999998421 1 122334444455545554
Q ss_pred eeee-------cCCEEEEEEEEc
Q 026513 216 LVSE-------MDDWTCVSGKKK 231 (237)
Q Consensus 216 ~~~~-------~~~w~~~~~~~~ 231 (237)
.... .+.|..+++++.
T Consensus 216 ~~~~~~vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 216 RPYQAAIPTYPSGLWSFTFASKN 238 (283)
T ss_pred EEEEeECCcccCchheeEEeecC
Confidence 4422 466999988873
No 85
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.48 E-value=5.8e-13 Score=107.29 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=92.2
Q ss_pred CchhHHHHHHHHHhhc---cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc
Q 026513 53 EHATTKLCLLLLRRLI---KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP 129 (237)
Q Consensus 53 ~~~~~~~~~~~l~~~~---~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~ 129 (237)
.+|++..+.+.+-..+ -.|.+|||++||+|.+++.++.+|+.+|+++|.++.+++.+++|+..+++.. +++++.
T Consensus 29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~---~~~~~~ 105 (189)
T TIGR00095 29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGE---QAEVVR 105 (189)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcc---cEEEEe
Confidence 4777777776665543 3588999999999999999999988899999999999999999999998764 478889
Q ss_pred CccccccccccccccccccccccccCCC-CCCceeEEEEeCChHH--HHHHHHHHh--HhcCCCeEEEEe
Q 026513 130 DRTFTASMNERVDGVVEDLSSHKIRGIS-QTEKYDVVIANILLNP--LLQLADHIV--SYAKPGAVVGIS 194 (237)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~n~~~~~--~~~~l~~~~--~~L~~gG~liis 194 (237)
+|+.+.. .... ....||+|+.+||+.. ...++..+. .+|+++|.+++.
T Consensus 106 ~D~~~~l-----------------~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 106 NSALRAL-----------------KFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred hhHHHHH-----------------HHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 9985311 1111 1235899999999742 334444443 368999988885
No 86
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=3.4e-13 Score=113.62 Aligned_cols=98 Identities=23% Similarity=0.318 Sum_probs=79.2
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++. . ++.++.+|..+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~----~~~~~~~d~~~------------ 87 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----P----DCQFVEADIAS------------ 87 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----C----CCeEEECchhc------------
Confidence 356789999999999999998865 5678999999999999998763 2 25566777642
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~ 195 (237)
+.+..+||+|+++..++++ ..+++++.+.|+|||.+++..
T Consensus 88 ---------~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 88 ---------WQPPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ---------cCCCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 2234689999999988765 467999999999999999863
No 87
>PRK04266 fibrillarin; Provisional
Probab=99.48 E-value=2e-12 Score=106.84 Aligned_cols=133 Identities=15% Similarity=0.164 Sum_probs=91.6
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.+|.+|||+|||+|.++..+++. +..+|+|+|+++.|++.+.++++.. .+ +.++.+|..++..
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~n----v~~i~~D~~~~~~--------- 134 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KN----IIPILADARKPER--------- 134 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CC----cEEEECCCCCcch---------
Confidence 568899999999999999999875 4468999999999999887776643 33 6677888653110
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHH-HHHHHHHhHhcCCCeEEEEe------ccCCCCH---HHHHHHHhh-ccccc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPL-LQLADHIVSYAKPGAVVGIS------GILSEQL---PHIINRYSE-FLEDI 215 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-~~~l~~~~~~L~~gG~liis------~~~~~~~---~~~~~~~~~-~~~~~ 215 (237)
......+||+|+++.+.... ..++..+.+.|||||.++++ ++..+.. .+....+.+ .|+.+
T Consensus 135 --------~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 135 --------YAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred --------hhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 00113469999997754322 34578999999999999993 3322221 123344444 37777
Q ss_pred eeeecCCE
Q 026513 216 LVSEMDDW 223 (237)
Q Consensus 216 ~~~~~~~w 223 (237)
+..+...|
T Consensus 207 ~~~~l~p~ 214 (226)
T PRK04266 207 EVVDLEPY 214 (226)
T ss_pred EEEcCCCC
Confidence 77665555
No 88
>PRK06922 hypothetical protein; Provisional
Probab=99.47 E-value=7.3e-13 Score=122.44 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=82.2
Q ss_pred CCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
++.+|||+|||+|.++..++. .+..+++|+|+|+.|++.|++++...+. ++.++++|..+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-----~ie~I~gDa~d-------------- 478 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-----SWNVIKGDAIN-------------- 478 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-----CeEEEEcchHh--------------
Confidence 578999999999999888875 4677899999999999999988765442 26677888652
Q ss_pred ccccccCCCCCCceeEEEEeCChHHH----------------HHHHHHHhHhcCCCeEEEEecc
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPL----------------LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~----------------~~~l~~~~~~L~~gG~liis~~ 196 (237)
+....++++||+|+++++++.+ .++++++.++|+|||.+++.+.
T Consensus 479 ----Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 479 ----LSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred ----CccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1122335789999999877642 4678999999999999999753
No 89
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.47 E-value=3.3e-12 Score=105.68 Aligned_cols=146 Identities=16% Similarity=0.256 Sum_probs=102.1
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHH-HHhh----ccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHH
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLL-LRRL----IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQ 111 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~-l~~~----~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~ 111 (237)
...+...|+...- ++.+....++ +... ...+..+||+|||+|.+++.++. .+...++|+|.|+.++..|.+
T Consensus 114 ~l~l~~~pgVlIP---RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~e 190 (328)
T KOG2904|consen 114 DLDLVCKPGVLIP---RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKE 190 (328)
T ss_pred CceEEecCCeeec---CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHH
Confidence 4556666765543 4444333333 3322 22455799999999999998875 578889999999999999999
Q ss_pred HHHHcCCCCCcceEEec----cCccccccccccccccccccccccccCCCCCCceeEEEEeCCh----------------
Q 026513 112 NAALNNIGPKKMKLHLV----PDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---------------- 171 (237)
Q Consensus 112 ~~~~~~~~~~~~~v~~~----~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---------------- 171 (237)
|+..+++.+ ++.++ +.|..++ .....+++|++++|||+
T Consensus 191 N~qr~~l~g---~i~v~~~~me~d~~~~-------------------~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~y 248 (328)
T KOG2904|consen 191 NAQRLKLSG---RIEVIHNIMESDASDE-------------------HPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLY 248 (328)
T ss_pred HHHHHhhcC---ceEEEecccccccccc-------------------cccccCceeEEecCCCcccccchhhcCchheec
Confidence 999999887 45555 3444321 11236899999999993
Q ss_pred -------------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 172 -------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 172 -------------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
..+..++..+.++|+|||.+.+.-.-.++...+....
T Consensus 249 Ep~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 249 EPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIW 298 (328)
T ss_pred CchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHH
Confidence 2334667888999999999999865444444444433
No 90
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.46 E-value=1.8e-12 Score=112.81 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=91.7
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.++.+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++.... ++.++.+|..+.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-------~i~~i~gD~e~l------------ 172 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-------ECKIIEGDAEDL------------ 172 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-------CCeEEeccHHhC------------
Confidence 46789999999999999888764 5678999999999999999876422 255678886531
Q ss_pred cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccC----------------CCCHHHHHHHH
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGIL----------------SEQLPHIINRY 208 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~----------------~~~~~~~~~~~ 208 (237)
..++++||+|+++.++++. ...++++.+.|+|||.+++.+.. .....++.+.+
T Consensus 173 --------p~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL 244 (340)
T PLN02490 173 --------PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWF 244 (340)
T ss_pred --------CCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHH
Confidence 1235689999998877653 46789999999999999875321 12346666666
Q ss_pred hhc-cccceeee
Q 026513 209 SEF-LEDILVSE 219 (237)
Q Consensus 209 ~~~-~~~~~~~~ 219 (237)
.+- |+.++..+
T Consensus 245 ~~aGF~~V~i~~ 256 (340)
T PLN02490 245 TKAGFKDVKLKR 256 (340)
T ss_pred HHCCCeEEEEEE
Confidence 653 77666544
No 91
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.46 E-value=1.7e-12 Score=109.92 Aligned_cols=119 Identities=15% Similarity=0.109 Sum_probs=90.7
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+++|.+|||+|||+|..+..++.. ....|+++|+++.+++.+++++..+++.+ +.++..|.....
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~----v~~~~~D~~~~~--------- 135 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN----VAVTNFDGRVFG--------- 135 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc----EEEecCCHHHhh---------
Confidence 467899999999999999988864 24589999999999999999999998864 778888865211
Q ss_pred cccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEe-ccCCC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGIS-GILSE 199 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis-~~~~~ 199 (237)
...++||+|++|+|.. ...+++..+.++|+|||+|+++ |....
T Consensus 136 -----------~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 136 -----------AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred -----------hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1134699999998731 2346899999999999999998 43333
Q ss_pred -CHHHHHHHHhh
Q 026513 200 -QLPHIINRYSE 210 (237)
Q Consensus 200 -~~~~~~~~~~~ 210 (237)
+.+++...+.+
T Consensus 205 ~Ene~vv~~~l~ 216 (264)
T TIGR00446 205 EENEAVVDYLLE 216 (264)
T ss_pred HHHHHHHHHHHH
Confidence 33455555543
No 92
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.46 E-value=2e-12 Score=105.92 Aligned_cols=100 Identities=13% Similarity=0.168 Sum_probs=81.3
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
+.++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++...++.+ +.++.+|..+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~----v~~~~~d~~~------------- 137 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN----VSVRHGDGWK------------- 137 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc----eEEEECCccc-------------
Confidence 4678899999999999998888764 479999999999999999999888765 7888888652
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+...++||+|+++.....+ ...+.+.|+|||.+++.-
T Consensus 138 -------~~~~~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 138 -------GWPAYAPFDRILVTAAAPEI---PRALLEQLKEGGILVAPV 175 (212)
T ss_pred -------CCCcCCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEEE
Confidence 12224689999998866544 456788999999999863
No 93
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.46 E-value=6.4e-13 Score=108.72 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=90.1
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
++++.+|||+|||+|.++..+++. + ..+|+|+|+++ + ++..+ +.++++|+.+..+-+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~----v~~i~~D~~~~~~~~------ 107 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVG----VDFLQGDFRDELVLK------ 107 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCC----cEEEecCCCChHHHH------
Confidence 578889999999999999998876 2 36899999998 1 12232 778899987422100
Q ss_pred cccccccccCCCCCCceeEEEEeCCh--------HH------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILL--------NP------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~--------~~------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
. +......++||+|++++.. +. ...+++.+.++|+|||.+++..+......+++..++..
T Consensus 108 -~-----i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~ 181 (209)
T PRK11188 108 -A-----LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL 181 (209)
T ss_pred -H-----HHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhC
Confidence 0 0001225689999998732 11 13578999999999999999988899999999988877
Q ss_pred ccccee
Q 026513 212 LEDILV 217 (237)
Q Consensus 212 ~~~~~~ 217 (237)
|..+++
T Consensus 182 f~~v~~ 187 (209)
T PRK11188 182 FTKVKV 187 (209)
T ss_pred ceEEEE
Confidence 766655
No 94
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.45 E-value=6.2e-13 Score=112.31 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=75.6
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
-.|++|||||||+|+++..++..|+..|+|+|.++...-..+..-...+... .+..+...+.
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~---~~~~lplgvE--------------- 175 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDP---PVFELPLGVE--------------- 175 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCc---cEEEcCcchh---------------
Confidence 3589999999999999999999999999999999988766544333333222 2333222211
Q ss_pred ccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEe
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis 194 (237)
.+...++||+|+|-.++.|.+ ..+..++..|++||.|++.
T Consensus 176 ------~Lp~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 176 ------DLPNLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred ------hccccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 222256899999999987775 4578899999999999974
No 95
>PLN02672 methionine S-methyltransferase
Probab=99.44 E-value=4.8e-12 Score=123.42 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=103.3
Q ss_pred CCCceeEEeCcccccCCCCchhHHHHHHHHHhhcc---CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHH
Q 026513 35 DVQATNIILNPGLAFGSGEHATTKLCLLLLRRLIK---GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAH 110 (237)
Q Consensus 35 ~~~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~---~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~ 110 (237)
.....++.+.|+...- ++.+..+.+.+..... ++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|+
T Consensus 83 ~F~~l~~~V~p~VLIP---RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIP---EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW 159 (1082)
T ss_pred EecCCceeeCCCcccC---chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 3445677888874433 4666666666543211 2468999999999999999875 5578999999999999999
Q ss_pred HHHHHcCCCC------------CcceEEeccCccccccccccccccccccccccccCCCC-CCceeEEEEeCCh------
Q 026513 111 QNAALNNIGP------------KKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQ-TEKYDVVIANILL------ 171 (237)
Q Consensus 111 ~~~~~~~~~~------------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~n~~~------ 171 (237)
+|+..++++. ..-++.++++|+++. +.. ..+||+|++|||+
T Consensus 160 ~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~--------------------~~~~~~~fDlIVSNPPYI~~~e~ 219 (1082)
T PLN02672 160 INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY--------------------CRDNNIELDRIVGCIPQILNPNP 219 (1082)
T ss_pred HHHHHcCcccccccccccccccccccEEEEECchhhh--------------------ccccCCceEEEEECCCcCCCcch
Confidence 9999876430 011488999998741 111 2379999999983
Q ss_pred --------H---------------------------HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHH
Q 026513 172 --------N---------------------------PLLQLADHIVSYAKPGAVVGISGILSEQLPHII 205 (237)
Q Consensus 172 --------~---------------------------~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~ 205 (237)
. .+++++..+.++|+|||.+++. +-..+...+.
T Consensus 220 ~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE-iG~~q~~~v~ 287 (1082)
T PLN02672 220 EAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN-MGGRPGQAVC 287 (1082)
T ss_pred hhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE-ECccHHHHHH
Confidence 0 0145678888999999999984 2233344444
No 96
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=6.5e-12 Score=98.09 Aligned_cols=115 Identities=20% Similarity=0.334 Sum_probs=95.7
Q ss_pred CCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.+-++|||||+|..+..+++. +...+.++|++|.+++..++.++.|++. +..++.|+.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-----~~~V~tdl~~-------------- 104 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-----IDVVRTDLLS-------------- 104 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-----cceeehhHHh--------------
Confidence 567999999999999888864 5667889999999999999999998865 6778888764
Q ss_pred ccccccCCCCCCceeEEEEeCCh------------------------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHH
Q 026513 149 SSHKIRGISQTEKYDVVIANILL------------------------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHI 204 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~------------------------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~ 204 (237)
.+. .++.|+++.|||+ ..+.+++..+...|+|.|.+|+-.+.++...++
T Consensus 105 ------~l~-~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei 177 (209)
T KOG3191|consen 105 ------GLR-NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEI 177 (209)
T ss_pred ------hhc-cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHH
Confidence 222 3799999999983 223567888889999999999999999999999
Q ss_pred HHHHhhc
Q 026513 205 INRYSEF 211 (237)
Q Consensus 205 ~~~~~~~ 211 (237)
.+.++..
T Consensus 178 ~k~l~~~ 184 (209)
T KOG3191|consen 178 LKILEKK 184 (209)
T ss_pred HHHHhhc
Confidence 9977654
No 97
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.44 E-value=3.2e-13 Score=97.67 Aligned_cols=91 Identities=25% Similarity=0.412 Sum_probs=69.3
Q ss_pred EEEEcCcchHHHHHHHHh---C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 74 FLDYGTGSGILGIAAIKF---G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 74 vLDlG~G~G~~~~~la~~---~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
|||+|||+|..+..++.. + ..+++|+|+|+.+++.++++....+.. ++++++|+.+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~-----~~~~~~D~~~l~------------- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPK-----VRFVQADARDLP------------- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTT-----SEEEESCTTCHH-------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCc-----eEEEECCHhHCc-------------
Confidence 799999999999999865 2 378999999999999999998876652 778899986311
Q ss_pred cccccCCCCCCceeEEEEeCC-hHH-----HHHHHHHHhHhcCCCe
Q 026513 150 SHKIRGISQTEKYDVVIANIL-LNP-----LLQLADHIVSYAKPGA 189 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~-~~~-----~~~~l~~~~~~L~~gG 189 (237)
..+++||+|++... +++ ...+++++.++|+|||
T Consensus 63 -------~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 63 -------FSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -------HHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -------ccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 12569999999443 443 3578999999999998
No 98
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.44 E-value=2.9e-13 Score=110.46 Aligned_cols=108 Identities=22% Similarity=0.326 Sum_probs=81.7
Q ss_pred HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513 58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA 135 (237)
Q Consensus 58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~ 135 (237)
..+++.++ +++|.+|||||||+|+++..++.. + ..+|+++|+++..++.|++++...+..+ +.++.+|...+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n----v~~~~gdg~~g 135 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN----VEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS----EEEEES-GGGT
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc----eeEEEcchhhc
Confidence 44444443 689999999999999999999976 3 3469999999999999999999988876 88999997642
Q ss_pred cccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
+....+||.|+++..... +-..+.+.|++||+|++-
T Consensus 136 --------------------~~~~apfD~I~v~~a~~~---ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 136 --------------------WPEEAPFDRIIVTAAVPE---IPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp --------------------TGGG-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred --------------------cccCCCcCEEEEeeccch---HHHHHHHhcCCCcEEEEE
Confidence 223568999999886643 335578889999999984
No 99
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.44 E-value=3.3e-12 Score=105.70 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=83.5
Q ss_pred CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.+.+|||+|||+|.++..+++. +..+++++|+++.+++.+++.... ++.++.+|..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--------~~~~~~~d~~~-------------- 91 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE--------NVQFICGDAEK-------------- 91 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC--------CCeEEecchhh--------------
Confidence 3568999999999999998876 356799999999999988876541 25677777653
Q ss_pred ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHH
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHII 205 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~ 205 (237)
...++++||+|+++.++++. ..++..+.++|+|||.++++.+......++.
T Consensus 92 ------~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~ 145 (240)
T TIGR02072 92 ------LPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELR 145 (240)
T ss_pred ------CCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHH
Confidence 11235789999999887655 4679999999999999999876555444433
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.43 E-value=1.5e-12 Score=114.54 Aligned_cols=107 Identities=13% Similarity=0.180 Sum_probs=87.5
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
..+..+||||||+|.++..+|+. +...++|+|+++.+++.|.+++..+++.+ +.++++|+...
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N----V~~i~~DA~~l------------ 184 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN----LLIINYDARLL------------ 184 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc----EEEEECCHHHh------------
Confidence 34668999999999999999864 67789999999999999999999999886 88899997521
Q ss_pred cccccccCCCCCCceeEEEEeCChHH---------HHHHHHHHhHhcCCCeEEEEeccC
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNP---------LLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~---------~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
....+++++|.|+++.|..+ ...++..+.++|+|||.+.+..-.
T Consensus 185 ------l~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 185 ------LELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred ------hhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 12234679999999887432 246899999999999999996443
No 101
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.43 E-value=2.9e-14 Score=102.66 Aligned_cols=95 Identities=27% Similarity=0.357 Sum_probs=60.2
Q ss_pred EEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccc
Q 026513 75 LDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKI 153 (237)
Q Consensus 75 LDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 153 (237)
||+|||+|.++..+... +..+++++|+|+.+++.|++++......+ ...+.+...+..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~-------------------- 59 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLF-------------------- 59 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS----------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChh--------------------
Confidence 79999999999988765 77889999999999999999888766432 111333333322
Q ss_pred cCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEE
Q 026513 154 RGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVV 191 (237)
Q Consensus 154 ~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~l 191 (237)
.....++||+|++..+++++ ..+++++.++|+|||+|
T Consensus 60 -~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 60 -DYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred -hcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 11122599999999988776 46799999999999986
No 102
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.6e-12 Score=105.77 Aligned_cols=125 Identities=23% Similarity=0.254 Sum_probs=103.4
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.+|.+|+|.|+|+|.++.++++. +..+|+..|+.++.++.|++|++..++.+ ++.+..+|+.+.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d---~v~~~~~Dv~~~---------- 158 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD---RVTLKLGDVREG---------- 158 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc---ceEEEecccccc----------
Confidence 568999999999999999999964 55899999999999999999999988887 377778888742
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccceee
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILVS 218 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~ 218 (237)
.....||.|+.+.|-.+ ++++++...|+|||.+++-.-..++.......+++. |..++..
T Consensus 159 -----------~~~~~vDav~LDmp~PW--~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 159 -----------IDEEDVDAVFLDLPDPW--NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred -----------ccccccCEEEEcCCChH--HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhh
Confidence 22348999999987653 678999999999999999776777788888888776 6555543
No 103
>PLN02476 O-methyltransferase
Probab=99.43 E-value=1e-11 Score=105.05 Aligned_cols=121 Identities=13% Similarity=0.212 Sum_probs=93.5
Q ss_pred HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513 58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA 135 (237)
Q Consensus 58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~ 135 (237)
..++..+.+. .+.++|||+|||+|+.++.++.. ...+++++|.+++.++.|+++++..|+.+ +++++.+|..+.
T Consensus 107 g~lL~~L~~~-~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~---~I~li~GdA~e~ 182 (278)
T PLN02476 107 AQLLAMLVQI-LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSH---KVNVKHGLAAES 182 (278)
T ss_pred HHHHHHHHHh-cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEEcCHHHH
Confidence 3334444333 35679999999999999999863 35679999999999999999999999975 588889987631
Q ss_pred cccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
. +.+ ..-...++||+||.+..-..+..+++.+.++|+|||.+++...
T Consensus 183 L---------~~l-----~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 183 L---------KSM-----IQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred H---------HHH-----HhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 1 100 0000135899999999988899999999999999999998644
No 104
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.43 E-value=2.4e-13 Score=108.89 Aligned_cols=96 Identities=22% Similarity=0.254 Sum_probs=82.0
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.+..+|.|+|||+|..+..++++ +...++|+|.|+.|++.|++.+. + +.|..+|+.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-----~----~~f~~aDl~-------------- 85 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-----D----ATFEEADLR-------------- 85 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-----C----CceecccHh--------------
Confidence 34568999999999999999864 88999999999999999976532 2 667788875
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEe
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis 194 (237)
.+.+..+.|++++|.+++++. +++.++...|.|||.|-+.
T Consensus 86 -------~w~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 86 -------TWKPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred -------hcCCCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 677788999999999998774 6889999999999999985
No 105
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=5.1e-12 Score=114.55 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=84.7
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
..+|.+|||+|||+|..+..++.. +..+|+++|+|+.+++.+++++...++.+ +.++++|..+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~----v~~~~~Da~~----------- 312 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI----IETIEGDARS----------- 312 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe----EEEEeCcccc-----------
Confidence 457889999999999999888764 34689999999999999999999988864 8888888762
Q ss_pred cccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEecc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
+.+..+||+|++++|.. ....++..+.++|+|||++++++.
T Consensus 313 ----------~~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 313 ----------FSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred ----------cccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 22346899999988731 123579999999999999999844
No 106
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.43 E-value=5.1e-13 Score=106.93 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=90.8
Q ss_pred CCCchhHHHHHHHHHhhc----cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE
Q 026513 51 SGEHATTKLCLLLLRRLI----KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH 126 (237)
Q Consensus 51 ~g~~~~~~~~~~~l~~~~----~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~ 126 (237)
.+.+|++..+.+.+-+.+ -.|.++||+.||+|.+++.+..+|+.+|+.+|.++.+++..++|+...++.+ ++.
T Consensus 19 ~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~---~~~ 95 (183)
T PF03602_consen 19 DNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLED---KIR 95 (183)
T ss_dssp -TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GG---GEE
T ss_pred CCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCc---cee
Confidence 344777777777775543 3689999999999999999999999999999999999999999999888775 477
Q ss_pred eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH---HHHHHHHHh--HhcCCCeEEEEecc
Q 026513 127 LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP---LLQLADHIV--SYAKPGAVVGISGI 196 (237)
Q Consensus 127 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~--~~L~~gG~liis~~ 196 (237)
++..|....... ......+||+|+++||+.. +..++..+. .+|+++|.+++-.-
T Consensus 96 v~~~d~~~~l~~----------------~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 96 VIKGDAFKFLLK----------------LAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEESSHHHHHHH----------------HHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred eeccCHHHHHHh----------------hcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 888886532100 1112579999999999732 356777776 78999999999643
No 107
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.42 E-value=2.3e-12 Score=105.09 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=75.2
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|+++.. .+.+.++|..+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~------------ 99 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFD------------ 99 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccC------------
Confidence 456789999999999999999875 66789999999999999987642 14455677552
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEeccCC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGILS 198 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~~~ 198 (237)
..++++||+|+++.+++++ .++++++.+.+ +++++++.+..
T Consensus 100 ---------~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 100 ---------PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred ---------CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 2236799999999987654 45677777765 56777766543
No 108
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=8.7e-12 Score=113.03 Aligned_cols=105 Identities=19% Similarity=0.236 Sum_probs=84.8
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++|+...++.+ +.++++|+.+..
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~----v~~~~~D~~~~~--------- 314 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN----IETKALDARKVH--------- 314 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe----EEEEeCCccccc---------
Confidence 357889999999999999998864 45789999999999999999999998874 888899876310
Q ss_pred cccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis~ 195 (237)
... .++||+|++|+|.. ...+++..+.++|+|||.+++++
T Consensus 315 ---------~~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 315 ---------EKF-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred ---------chh-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 111 26899999998731 12457899999999999999873
No 109
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.42 E-value=3.7e-12 Score=104.52 Aligned_cols=125 Identities=13% Similarity=0.172 Sum_probs=97.4
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-CC------CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-GA------AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERV 141 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-~~------~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 141 (237)
.++.++||++||||-++..+.++ +. .+|+.+|++|.|++.+++.+.+.++..+. ++.++++|+.+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~-~~~w~~~dAE~------- 170 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASS-RVEWVEGDAED------- 170 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCC-ceEEEeCCccc-------
Confidence 45789999999999999887754 33 78999999999999999999877776533 37888999863
Q ss_pred cccccccccccccCCCCCCceeEEEEeCCh---HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccc
Q 026513 142 DGVVEDLSSHKIRGISQTEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LED 214 (237)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~ 214 (237)
..+++.+||...+...+ .+..+.+++++++|||||++++-.|-....+.+...+..+ |..
T Consensus 171 -------------LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 171 -------------LPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred -------------CCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 23457899999887654 4456789999999999999997766555556677777766 443
No 110
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=2.5e-12 Score=115.94 Aligned_cols=118 Identities=13% Similarity=0.194 Sum_probs=90.2
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.+|.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++...++.+ +.++.+|..+..
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~----v~~~~~Da~~l~--------- 301 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS----IEIKIADAERLT--------- 301 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe----EEEEECchhhhh---------
Confidence 467889999999999999988865 35789999999999999999999988864 778888875210
Q ss_pred cccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEe-ccC-C
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGIS-GIL-S 198 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis-~~~-~ 198 (237)
. ...++||.|++|+|.. ...+++..+.++|+|||.++++ |.. .
T Consensus 302 ---------~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 302 ---------E-YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred ---------h-hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 1 1246899999998841 2246789999999999999997 333 3
Q ss_pred CCHHHHHHHH
Q 026513 199 EQLPHIINRY 208 (237)
Q Consensus 199 ~~~~~~~~~~ 208 (237)
++..+....+
T Consensus 372 eEne~vv~~f 381 (431)
T PRK14903 372 EENTEVVKRF 381 (431)
T ss_pred hhCHHHHHHH
Confidence 3334444433
No 111
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.41 E-value=1e-11 Score=102.85 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=83.0
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++..+++.. .+.++.+|..+.
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~~d~~~~----------- 115 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSG---NVEFVQGDAEAL----------- 115 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccccc---CeEEEecccccC-----------
Confidence 467899999999999999988764 4889999999999999999987654433 367778887531
Q ss_pred ccccccccCCCCCCceeEEEEeCChHH---HHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~~~L~~gG~liis~~ 196 (237)
....++||+|+++..+++ ...++..+.++|+|||.+++.++
T Consensus 116 ---------~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 116 ---------PFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ---------CCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 122468999998776543 35778999999999999998654
No 112
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2e-12 Score=101.84 Aligned_cols=89 Identities=30% Similarity=0.402 Sum_probs=72.8
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.-.|++|+|+|||||.+++.++-.|+.+|+|+|+++++++.+++|+.... . ++.++.+|+.+
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g----~v~f~~~dv~~------------- 104 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-G----DVEFVVADVSD------------- 104 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-C----ceEEEEcchhh-------------
Confidence 34578999999999999999999999999999999999999999998833 3 38899999863
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHH-----HHHHHHhHh
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLL-----QLADHIVSY 184 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~-----~~l~~~~~~ 184 (237)
+ ..++|.++.|||+.... .++..+.+.
T Consensus 105 --------~--~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 105 --------F--RGKFDTVIMNPPFGSQRRHADRPFLLKALEI 136 (198)
T ss_pred --------c--CCccceEEECCCCccccccCCHHHHHHHHHh
Confidence 2 57899999999975442 455555543
No 113
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.41 E-value=3.7e-12 Score=114.83 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=84.1
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.+|.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++|+...++.. ++.+..+|.....
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~---~v~~~~~d~~~~~---------- 302 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTI---KAETKDGDGRGPS---------- 302 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCe---EEEEecccccccc----------
Confidence 457899999999999999998875 45789999999999999999999888752 4555667654210
Q ss_pred ccccccccCCCCCCceeEEEEeCChH-------------------------HHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLN-------------------------PLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~-------------------------~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.....++||.|++++|.. ...+++..+.++|+|||.|++++.
T Consensus 303 --------~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 303 --------QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred --------ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 111246899999988621 134689999999999999999843
No 114
>PHA03412 putative methyltransferase; Provisional
Probab=99.40 E-value=3.6e-12 Score=104.83 Aligned_cols=92 Identities=14% Similarity=0.205 Sum_probs=69.9
Q ss_pred CCCeEEEEcCcchHHHHHHHHh----CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKF----GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~----~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
.+.+|||+|||+|.+++.+++. +..+|+++|+++.+++.|+++.. .+.++.+|+..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~---------~~~~~~~D~~~----------- 108 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP---------EATWINADALT----------- 108 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc---------CCEEEEcchhc-----------
Confidence 3679999999999999988864 34589999999999999998753 15577788652
Q ss_pred cccccccccCCCCCCceeEEEEeCChHH---------------HHHHHHHHhHhcCCCeEE
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNP---------------LLQLADHIVSYAKPGAVV 191 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~---------------~~~~l~~~~~~L~~gG~l 191 (237)
...+.+||+||+|||+.. ...++..+.+++++|+.+
T Consensus 109 ----------~~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 109 ----------TEFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred ----------ccccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 112468999999999631 235788888877777763
No 115
>PRK04457 spermidine synthase; Provisional
Probab=99.40 E-value=5.5e-12 Score=106.63 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513 55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 133 (237)
Q Consensus 55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~ 133 (237)
+.++.++..+.. .+++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...+... +++++.+|..
T Consensus 52 ~y~~~m~~~l~~-~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~---rv~v~~~Da~ 127 (262)
T PRK04457 52 AYTRAMMGFLLF-NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGE---RFEVIEADGA 127 (262)
T ss_pred HHHHHHHHHHhc-CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCC---ceEEEECCHH
Confidence 455555544432 245678999999999999988764 67889999999999999999876543322 4788889976
Q ss_pred cccccccccccccccccccccCCCCCCceeEEEEeCChH-------HHHHHHHHHhHhcCCCeEEEEeccCC-CCHHHHH
Q 026513 134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGISGILS-EQLPHII 205 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l~~~~~~L~~gG~liis~~~~-~~~~~~~ 205 (237)
+.. .. ..++||+|++|..-. ...++++.+.+.|+|||++++..+.. .....+.
T Consensus 128 ~~l-----------------~~--~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l 188 (262)
T PRK04457 128 EYI-----------------AV--HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYL 188 (262)
T ss_pred HHH-----------------Hh--CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHH
Confidence 311 01 135899999975211 12588999999999999999964432 2345566
Q ss_pred HHHhhccc
Q 026513 206 NRYSEFLE 213 (237)
Q Consensus 206 ~~~~~~~~ 213 (237)
..++..|.
T Consensus 189 ~~l~~~F~ 196 (262)
T PRK04457 189 ERLESSFE 196 (262)
T ss_pred HHHHHhcC
Confidence 66666564
No 116
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.40 E-value=1.5e-11 Score=104.51 Aligned_cols=143 Identities=15% Similarity=0.100 Sum_probs=95.7
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
+.+++||++|||+|.++..+++.+ ..+++++|+++.+++.+++.+...+.....-+++++.+|..+..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l----------- 139 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL----------- 139 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH-----------
Confidence 345699999999999998887764 67899999999999999998754321111114666677765211
Q ss_pred cccccccCCCCCCceeEEEEeCCh--H---H--HHHHHHHHhHhcCCCeEEEEecc-CCCCH---HHHHHHHhhccccce
Q 026513 148 LSSHKIRGISQTEKYDVVIANILL--N---P--LLQLADHIVSYAKPGAVVGISGI-LSEQL---PHIINRYSEFLEDIL 216 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~--~---~--~~~~l~~~~~~L~~gG~liis~~-~~~~~---~~~~~~~~~~~~~~~ 216 (237)
.. ..++||+|+++.+. . . ..++++.+.+.|+|||.+++..- ..-.. ..+...++..|..+.
T Consensus 140 ------~~--~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~ 211 (270)
T TIGR00417 140 ------AD--TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITE 211 (270)
T ss_pred ------Hh--CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeE
Confidence 01 14689999998752 1 1 35778999999999999998521 11112 233333444454443
Q ss_pred ee-------ecCCEEEEEEEE
Q 026513 217 VS-------EMDDWTCVSGKK 230 (237)
Q Consensus 217 ~~-------~~~~w~~~~~~~ 230 (237)
.. ..+.|..++++|
T Consensus 212 ~~~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 212 YYTANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred EEEEEcCccccchhEEEEEEC
Confidence 31 246799999987
No 117
>PLN02366 spermidine synthase
Probab=99.39 E-value=2.4e-11 Score=104.73 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=99.6
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
++.++||++|||.|.++..+++++ ..+|+.+|+++.+++.|++.+...+.....-+++++.+|.....
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l----------- 158 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL----------- 158 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH-----------
Confidence 567899999999999999998874 57899999999999999998754321111125788889875311
Q ss_pred cccccccCCCCCCceeEEEEeCChH-------HHHHHHHHHhHhcCCCeEEEEe---ccC-CCCHHHHHHHHhhcc-ccc
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLN-------PLLQLADHIVSYAKPGAVVGIS---GIL-SEQLPHIINRYSEFL-EDI 215 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l~~~~~~L~~gG~liis---~~~-~~~~~~~~~~~~~~~-~~~ 215 (237)
... ++++||+|+++..-. ...++++.+.+.|+|||++++. .+. .+....+...++..| ..+
T Consensus 159 ------~~~-~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v 231 (308)
T PLN02366 159 ------KNA-PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSV 231 (308)
T ss_pred ------hhc-cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCce
Confidence 111 246899999975421 1246899999999999999873 222 222334555555555 222
Q ss_pred e-----eee--cCCEEEEEEEEc
Q 026513 216 L-----VSE--MDDWTCVSGKKK 231 (237)
Q Consensus 216 ~-----~~~--~~~w~~~~~~~~ 231 (237)
. ++. .+.|..+++.+.
T Consensus 232 ~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 232 NYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred eEEEecCCCcCCCceEEEEEECC
Confidence 2 122 367999999875
No 118
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.39 E-value=2.3e-12 Score=100.14 Aligned_cols=97 Identities=28% Similarity=0.347 Sum_probs=74.1
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
..++.+|||+|||+|.++..++..|. +++|+|+++.+++. .. +.....+...
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~~-------~~~~~~~~~~------------- 71 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------RN-------VVFDNFDAQD------------- 71 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------TT-------SEEEEEECHT-------------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------hh-------hhhhhhhhhh-------------
Confidence 46788999999999999999988866 89999999999887 11 1111111100
Q ss_pred cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEeccCCC
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGILSE 199 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~~~~ 199 (237)
...+.++||+|+|+.+++++ ..+++.+.++|+|||+++++.....
T Consensus 72 -------~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 72 -------PPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp -------HHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred -------hhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 11236799999999998776 4679999999999999999876543
No 119
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.39 E-value=1e-11 Score=98.51 Aligned_cols=125 Identities=24% Similarity=0.300 Sum_probs=95.3
Q ss_pred CCCchhHHHHHHHHHhhcc----CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE
Q 026513 51 SGEHATTKLCLLLLRRLIK----GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH 126 (237)
Q Consensus 51 ~g~~~~~~~~~~~l~~~~~----~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~ 126 (237)
.+.+|++..+.+.+-+.+. .|.++||+.+|+|.+++.++.+|+.+++.+|.|..++...++|+...++.. +..
T Consensus 20 ~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~---~~~ 96 (187)
T COG0742 20 PGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEG---EAR 96 (187)
T ss_pred CCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCcc---ceE
Confidence 4568888888888877554 478999999999999999999999999999999999999999999887654 477
Q ss_pred eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH--HHHHH--HHH--HhHhcCCCeEEEEec
Q 026513 127 LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN--PLLQL--ADH--IVSYAKPGAVVGISG 195 (237)
Q Consensus 127 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~--~~~~~--l~~--~~~~L~~gG~liis~ 195 (237)
++..|.... +.......+||+|+.+||++ ..... +.. -..+|+|+|.+++-.
T Consensus 97 ~~~~da~~~-----------------L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 97 VLRNDALRA-----------------LKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred EEeecHHHH-----------------HHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 778876521 11122123599999999986 22111 122 346799999999963
No 120
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.39 E-value=9.7e-12 Score=101.19 Aligned_cols=120 Identities=16% Similarity=0.248 Sum_probs=92.0
Q ss_pred HHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513 59 LCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS 136 (237)
Q Consensus 59 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~ 136 (237)
.++..+.+. .+.++||||||++|+-++.++.. ...+|+.+|++++..+.|+++++..|+.+ +++++.+|..+..
T Consensus 35 ~lL~~l~~~-~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~---~I~~~~gda~~~l 110 (205)
T PF01596_consen 35 QLLQMLVRL-TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDD---RIEVIEGDALEVL 110 (205)
T ss_dssp HHHHHHHHH-HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGG---GEEEEES-HHHHH
T ss_pred HHHHHHHHh-cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCC---cEEEEEeccHhhH
Confidence 334444333 34569999999999999999964 35789999999999999999999999875 5889999986311
Q ss_pred ccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
+++.. -...++||+||.+..-..+..++..+.++|+|||.+++...
T Consensus 111 -----~~l~~---------~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 111 -----PELAN---------DGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp -----HHHHH---------TTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred -----HHHHh---------ccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence 10100 01135899999999988888999999999999999999644
No 121
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.38 E-value=5.4e-12 Score=100.28 Aligned_cols=148 Identities=21% Similarity=0.257 Sum_probs=87.9
Q ss_pred eCcccccCCCCchhHHHHHHHHHhh--------ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHH
Q 026513 43 LNPGLAFGSGEHATTKLCLLLLRRL--------IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNA 113 (237)
Q Consensus 43 ~~~~~~f~~g~~~~~~~~~~~l~~~--------~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~ 113 (237)
.+.+..+|.-.++....+..++... ..++.+|||+|||+|..++.++.. +..+|+.+|.++ .++..+.|+
T Consensus 10 e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni 88 (173)
T PF10294_consen 10 EDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNI 88 (173)
T ss_dssp -------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHH
T ss_pred cccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHH
Confidence 3344456666788888877777652 346889999999999999999987 788999999999 999999999
Q ss_pred HHcC--CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh---HHHHHHHHHHhHhcCCC
Q 026513 114 ALNN--IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---NPLLQLADHIVSYAKPG 188 (237)
Q Consensus 114 ~~~~--~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---~~~~~~l~~~~~~L~~g 188 (237)
+.|+ ... ++.+...||.+.... ......+||+|++.-.+ .....++..+..+++++
T Consensus 89 ~~N~~~~~~---~v~v~~L~Wg~~~~~----------------~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~ 149 (173)
T PF10294_consen 89 ELNGSLLDG---RVSVRPLDWGDELDS----------------DLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPN 149 (173)
T ss_dssp HTT-----------EEEE--TTS-HHH----------------HHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-
T ss_pred Hhccccccc---cccCcEEEecCcccc----------------cccccccCCEEEEecccchHHHHHHHHHHHHHHhCCC
Confidence 9887 332 467777777642100 11124589999986654 34467889999999999
Q ss_pred eEEEEeccC-CCCHHHHHHHHhh
Q 026513 189 AVVGISGIL-SEQLPHIINRYSE 210 (237)
Q Consensus 189 G~liis~~~-~~~~~~~~~~~~~ 210 (237)
|.++++.-. .....++++.+++
T Consensus 150 ~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 150 GKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp TTEEEEEE-S-TGGCHHHHHH--
T ss_pred CEEEEEeCEecHHHHHHHHHhhh
Confidence 998887543 3345566666553
No 122
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.38 E-value=2.9e-12 Score=101.75 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=80.4
Q ss_pred HHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccc
Q 026513 62 LLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERV 141 (237)
Q Consensus 62 ~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 141 (237)
+.+.+.+++|.+|||+|||.|.+...+......+..|+|+++..+..+.++ | +.++++|+.+..
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G-------v~Viq~Dld~gL----- 68 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G-------VSVIQGDLDEGL----- 68 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C-------CCEEECCHHHhH-----
Confidence 345556789999999999999999999887677899999999988776544 5 447788876421
Q ss_pred cccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 142 DGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
...++.+||.||++-.+..+..--.-+.++|+-|...++|
T Consensus 69 -------------~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVs 108 (193)
T PF07021_consen 69 -------------ADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVS 108 (193)
T ss_pred -------------hhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEE
Confidence 2345889999999988877765545566667778888875
No 123
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.37 E-value=9.2e-12 Score=102.10 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=75.5
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC-----------CcceEEeccCccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP-----------KKMKLHLVPDRTFTASM 137 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~-----------~~~~v~~~~~d~~~~~~ 137 (237)
+++.+|||+|||.|..++.+|..|.. |+|+|+|+.+++.+.+. +++.. ...++.+.++|+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~- 107 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT- 107 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCC-
Confidence 46779999999999999999998765 99999999999976432 22211 1124778888887321
Q ss_pred cccccccccccccccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
....++||.|+....+ .....+++.+.++|+|||.+++.++
T Consensus 108 ------------------~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 108 ------------------AADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred ------------------cccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 1113568888764433 3345689999999999998776544
No 124
>PHA03411 putative methyltransferase; Provisional
Probab=99.37 E-value=3.7e-12 Score=107.04 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=83.0
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
..+.+|||+|||+|.+++.++.. +..+|+++|+++.+++.+++++. ++.++++|+.+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~---------~v~~v~~D~~e------------- 120 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP---------EAEWITSDVFE------------- 120 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc---------CCEEEECchhh-------------
Confidence 34568999999999999888764 35789999999999999988632 26677888763
Q ss_pred cccccccCCCCCCceeEEEEeCChHH-----------------------HHHHHHHHhHhcCCCeEEEEe--c--c--CC
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNP-----------------------LLQLADHIVSYAKPGAVVGIS--G--I--LS 198 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~-----------------------~~~~l~~~~~~L~~gG~liis--~--~--~~ 198 (237)
+....+||+|++|||+.+ +.+++.....+|+|+|.+++. + + .+
T Consensus 121 --------~~~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~s 192 (279)
T PHA03411 121 --------FESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGT 192 (279)
T ss_pred --------hcccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccccc
Confidence 222468999999999633 235567778899999987763 1 1 23
Q ss_pred CCHHHHHHHHhhc
Q 026513 199 EQLPHIINRYSEF 211 (237)
Q Consensus 199 ~~~~~~~~~~~~~ 211 (237)
-...+..+.+.+.
T Consensus 193 l~~~~y~~~l~~~ 205 (279)
T PHA03411 193 MKSNKYLKWSKQT 205 (279)
T ss_pred CCHHHHHHHHHhc
Confidence 4466777777654
No 125
>PLN03075 nicotianamine synthase; Provisional
Probab=99.37 E-value=1.1e-11 Score=105.61 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=79.7
Q ss_pred CCCeEEEEcCcchHHH-HHHH-H-hCCCeEEEEeCCHHHHHHHHHHHHH-cCCCCCcceEEeccCccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILG-IAAI-K-FGAAMSVGADIDPQAIKSAHQNAAL-NNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~-~~la-~-~~~~~v~~vD~s~~~i~~a~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
++++|+|+|||.|.++ +.++ . .+..+++++|+|+.+++.|++.+.. .++.+ ++.|..+|..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~---rV~F~~~Da~~----------- 188 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSK---RMFFHTADVMD----------- 188 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccC---CcEEEECchhh-----------
Confidence 6789999999987554 4444 2 3667899999999999999999964 67765 58899999763
Q ss_pred cccccccccCCCCCCceeEEEEeCChH-----HHHHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~-----~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.....++||+|+++ .++ ...++++.+.+.|+|||.+++..
T Consensus 189 ---------~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 ---------VTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ---------cccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 11124689999999 543 33578999999999999999963
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=1.5e-11 Score=106.50 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=79.1
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
++++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++...++.+ +.++++|..+
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n----V~~i~gD~~~----------- 142 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN----VIFVCGDGYY----------- 142 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc----EEEEeCChhh-----------
Confidence 4678899999999999999998753 2469999999999999999999888764 7788888653
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
......+||+|+++...... ...+.+.|+|||.+++.
T Consensus 143 ---------~~~~~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 143 ---------GVPEFAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP 179 (322)
T ss_pred ---------cccccCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence 11123579999998755433 34567889999998884
No 127
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.36 E-value=1.8e-11 Score=99.85 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc-Cc
Q 026513 55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP-DR 131 (237)
Q Consensus 55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~-~d 131 (237)
+.+..++..+.+. .+.++|||+|++.|+-++.++.. + ..+++.+|++++.++.|++|+++.|+.+ ++..+. +|
T Consensus 45 ~e~g~~L~~L~~~-~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~---~i~~~~~gd 120 (219)
T COG4122 45 PETGALLRLLARL-SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDD---RIELLLGGD 120 (219)
T ss_pred hhHHHHHHHHHHh-cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEEecCc
Confidence 3444444554443 46789999999999999998863 4 6789999999999999999999999987 466666 57
Q ss_pred cccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 132 TFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
..+. +.. ...++||+||.+.--..+.+++..+.++|+|||.+++..++
T Consensus 121 al~~-----------------l~~-~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 121 ALDV-----------------LSR-LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred HHHH-----------------HHh-ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 6531 111 22589999999998888899999999999999999996543
No 128
>PRK08317 hypothetical protein; Provisional
Probab=99.35 E-value=2.4e-11 Score=100.41 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=80.3
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+|||+|||+|.++..++.. +..+++|+|+++.+++.++++.... .. .+.+..+|....
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~----~~~~~~~d~~~~---------- 81 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-GP----NVEFVRGDADGL---------- 81 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-CC----ceEEEecccccC----------
Confidence 467889999999999999988865 3578999999999999999873322 12 367777776521
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~ 195 (237)
....++||+|+++..+++. ..+++.+.++|+|||.+++..
T Consensus 82 ----------~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 82 ----------PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ----------CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 1225689999998877554 467999999999999999864
No 129
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.35 E-value=5.9e-12 Score=101.26 Aligned_cols=118 Identities=20% Similarity=0.309 Sum_probs=82.9
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+++|.+|||+|||+|.++..++.. +..+|+++|+++.+ ... .+.++++|..+....+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~----~i~~~~~d~~~~~~~~------ 88 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIE----NVDFIRGDFTDEEVLN------ 88 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCC----CceEEEeeCCChhHHH------
Confidence 578899999999999999988764 45679999999954 112 2566677765311000
Q ss_pred cccccccccCCCCCCceeEEEEeCC--------hHH------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANIL--------LNP------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~--------~~~------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
.+....+..+||+|+++++ .++ ...++..+.+.|+|||++++..+..+...++...+...
T Consensus 89 ------~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~ 162 (188)
T TIGR00438 89 ------KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL 162 (188)
T ss_pred ------HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh
Confidence 0001123468999999753 111 25678999999999999999888888888888877655
Q ss_pred c
Q 026513 212 L 212 (237)
Q Consensus 212 ~ 212 (237)
|
T Consensus 163 ~ 163 (188)
T TIGR00438 163 F 163 (188)
T ss_pred h
Confidence 4
No 130
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.35 E-value=1.5e-11 Score=101.12 Aligned_cols=99 Identities=22% Similarity=0.375 Sum_probs=77.3
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.|++++...+... ++.+..+|+.+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~---~i~~~~~d~~~-------------- 115 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAG---NVEFEVNDLLS-------------- 115 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCC---ceEEEECChhh--------------
Confidence 457899999999999999998774 579999999999999999988776532 37788888652
Q ss_pred ccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEe
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis 194 (237)
. ..+||+|++...+.+ ...++.++.+++++++++.++
T Consensus 116 -------~--~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 116 -------L--CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred -------C--CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 1 268999998665533 345678888888877766654
No 131
>PRK05785 hypothetical protein; Provisional
Probab=99.34 E-value=1.5e-11 Score=101.76 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=72.1
Q ss_pred HHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513 60 CLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE 139 (237)
Q Consensus 60 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 139 (237)
+...+.....++.+|||+|||+|.++..+++....+|+|+|+|+.|++.|++.. .++++|..+
T Consensus 41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~----- 103 (226)
T PRK05785 41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------------DKVVGSFEA----- 103 (226)
T ss_pred HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------------ceEEechhh-----
Confidence 334443333457899999999999999988763468999999999999988641 123555542
Q ss_pred cccccccccccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCC
Q 026513 140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPG 188 (237)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~g 188 (237)
...++++||+|+++..+++. .+.++++.+.|+|.
T Consensus 104 ---------------lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 104 ---------------LPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ---------------CCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 12346899999999887654 46799999999994
No 132
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.34 E-value=1.9e-11 Score=104.00 Aligned_cols=117 Identities=20% Similarity=0.158 Sum_probs=80.8
Q ss_pred HHHHHHHHhhc-cCCCeEEEEcCcchHHHHHHHHh-C---CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc
Q 026513 58 KLCLLLLRRLI-KGGELFLDYGTGSGILGIAAIKF-G---AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 132 (237)
Q Consensus 58 ~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~la~~-~---~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~ 132 (237)
..+...+...+ .++.+|||+|||+|.++..++.. + ..+++|+|+|+.+++.|+++. .+ +.+..+|.
T Consensus 72 ~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~----~~~~~~d~ 142 (272)
T PRK11088 72 DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQ----VTFCVASS 142 (272)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CC----CeEEEeec
Confidence 33334444332 34578999999999999988754 2 236999999999999987652 22 55667776
Q ss_pred ccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHH
Q 026513 133 FTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 207 (237)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~ 207 (237)
.+ ...++++||+|++... ...++++.+.|+|||++++.........++...
T Consensus 143 ~~--------------------lp~~~~sfD~I~~~~~----~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 143 HR--------------------LPFADQSLDAIIRIYA----PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred cc--------------------CCCcCCceeEEEEecC----CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 52 1223678999998654 234578899999999999976555444455444
No 133
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.34 E-value=1.1e-11 Score=98.13 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=78.0
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
..++.+|||+|||+|.++..++.. ..+++++|+++.+++.+++++.. .. +++++.+|+.+..
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--~~----~v~ii~~D~~~~~----------- 72 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--AD----NLTVIHGDALKFD----------- 72 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--CC----CEEEEECchhcCC-----------
Confidence 356789999999999999999987 57899999999999999988753 22 3788899986321
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHh--cCCCeEEEEe
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSY--AKPGAVVGIS 194 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~--L~~gG~liis 194 (237)
.++.+||.|++|+|++....++..+... +.++|.+++.
T Consensus 73 ---------~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 73 ---------LPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ---------ccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEE
Confidence 1234699999999998766776666653 3478888874
No 134
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.33 E-value=1.7e-11 Score=108.71 Aligned_cols=99 Identities=23% Similarity=0.295 Sum_probs=81.0
Q ss_pred CCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
+.+|||++||+|.+++.++.. +..+|+++|+++.+++.+++|++.|++.+ +.+.++|+...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~----~~v~~~Da~~~-------------- 119 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN----EKVFNKDANAL-------------- 119 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc----eEEEhhhHHHH--------------
Confidence 468999999999999998864 66689999999999999999999999875 66788887521
Q ss_pred cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
+.. ..+||+|++||+ .....+++.+...+++||.++++
T Consensus 120 ---l~~---~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 120 ---LHE---ERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---Hhh---cCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 101 357999999997 33356778877888999999997
No 135
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.32 E-value=2.3e-11 Score=105.14 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=83.3
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.++.+|||+|||+|.+++.+++. +..+++++|. +.+++.+++++...++.+ +++++.+|.++.
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~---rv~~~~~d~~~~----------- 211 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVAD---RMRGIAVDIYKE----------- 211 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccc---eEEEEecCccCC-----------
Confidence 356789999999999999998865 6678999997 789999999999888876 588999998631
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~ 196 (237)
. -+.+|+|++...++.. ..+++++.+.|+|||++++.++
T Consensus 212 --------~---~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 212 --------S---YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred --------C---CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 1 1247998876655432 4689999999999999999865
No 136
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.32 E-value=4.3e-11 Score=103.19 Aligned_cols=121 Identities=14% Similarity=0.090 Sum_probs=82.9
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc-cccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS-MNERVDGV 144 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~ 144 (237)
++++.+|||+|||+|..+..+++.. ..+|+++|+|+.|++.|++++.... ..+++.++++|+.+.. .+
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~---p~~~v~~i~gD~~~~~~~~------ 131 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY---PQLEVHGICADFTQPLALP------ 131 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC---CCceEEEEEEcccchhhhh------
Confidence 5577899999999999999988663 4679999999999999999876543 1234777889886421 00
Q ss_pred ccccccccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHH
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINR 207 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~ 207 (237)
.........+++++..+ .....+++++.+.|+|||.++++-....+...+...
T Consensus 132 ----------~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~a 189 (301)
T TIGR03438 132 ----------PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAA 189 (301)
T ss_pred ----------cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHh
Confidence 00001123344443332 334578999999999999999975555555544444
No 137
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1e-11 Score=110.80 Aligned_cols=152 Identities=19% Similarity=0.269 Sum_probs=114.2
Q ss_pred CceeEEeCcccccCCCCchhHHHHHHHHHh-hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Q 026513 37 QATNIILNPGLAFGSGEHATTKLCLLLLRR-LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL 115 (237)
Q Consensus 37 ~~~~~~~~~~~~f~~g~~~~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~ 115 (237)
....|.++|+.+|+++.+..+.+..-+=+. .+++++.++|+.||||.+++.+++. ..+|+|+++++++++.|+.|+..
T Consensus 349 ~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~ 427 (534)
T KOG2187|consen 349 LGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQI 427 (534)
T ss_pred CCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchh
Confidence 356899999999999887666544333222 2567889999999999999999876 78899999999999999999999
Q ss_pred cCCCCCcceEEeccCccccccccccccccccccccccccCCCC--CCcee-EEEEeCChHHHHH-HHHHHhHhcCCCeEE
Q 026513 116 NNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQ--TEKYD-VVIANILLNPLLQ-LADHIVSYAKPGAVV 191 (237)
Q Consensus 116 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD-~I~~n~~~~~~~~-~l~~~~~~L~~gG~l 191 (237)
|+++| ..|+++-..+ .+..+.. -.+-+ +++++|++..+.. +++.+...-++--.+
T Consensus 428 NgisN----a~Fi~gqaE~-----------------~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlv 486 (534)
T KOG2187|consen 428 NGISN----ATFIVGQAED-----------------LFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLV 486 (534)
T ss_pred cCccc----eeeeecchhh-----------------ccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceE
Confidence 99998 8888883321 1111111 12345 7788999877764 455566665699999
Q ss_pred EEeccCCCCHHHHHHHHhh
Q 026513 192 GISGILSEQLPHIINRYSE 210 (237)
Q Consensus 192 iis~~~~~~~~~~~~~~~~ 210 (237)
|+||......+.+...+.+
T Consensus 487 yvSCn~~t~ar~v~~lc~~ 505 (534)
T KOG2187|consen 487 YVSCNPHTAARNVIDLCSS 505 (534)
T ss_pred EEEcCHHHhhhhHHHhhcC
Confidence 9999877667777777664
No 138
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.30 E-value=3.1e-11 Score=85.52 Aligned_cols=99 Identities=26% Similarity=0.371 Sum_probs=77.5
Q ss_pred eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513 73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK 152 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (237)
+++|+|||+|.++..++..+..+++++|+++.+++.+++........ .+.++..|..+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------------- 60 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLAD----NVEVLKGDAEELP---------------- 60 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccccc----ceEEEEcChhhhc----------------
Confidence 48999999999999888766788999999999999998644433333 3777788876321
Q ss_pred ccCCCCCCceeEEEEeCChHH----HHHHHHHHhHhcCCCeEEEEe
Q 026513 153 IRGISQTEKYDVVIANILLNP----LLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 153 ~~~~~~~~~fD~I~~n~~~~~----~~~~l~~~~~~L~~gG~liis 194 (237)
. ...++||+|+++.+++. ...++..+.+.++|||.++++
T Consensus 61 --~-~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 61 --P-EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --c-ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 0 12468999999998754 356789999999999999986
No 139
>PRK01581 speE spermidine synthase; Validated
Probab=99.30 E-value=1.4e-10 Score=101.14 Aligned_cols=173 Identities=15% Similarity=0.110 Sum_probs=104.2
Q ss_pred eEEeCcccccCCCC-chhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHH----
Q 026513 40 NIILNPGLAFGSGE-HATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNA---- 113 (237)
Q Consensus 40 ~~~~~~~~~f~~g~-~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~---- 113 (237)
.+.++...-+.... +.....+...........++||++|||+|..+..+.+. +..+|+++|+++.+++.|++..
T Consensus 119 ~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~ 198 (374)
T PRK01581 119 RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS 198 (374)
T ss_pred EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch
Confidence 45555553333222 22333333333333355679999999999988888876 4678999999999999999631
Q ss_pred -HHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH-------H-HHHHHHHHhHh
Q 026513 114 -ALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------P-LLQLADHIVSY 184 (237)
Q Consensus 114 -~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~-~~~~l~~~~~~ 184 (237)
......+. +++++.+|..+.. . ...++||+|+++.+-. . ..++++.+.+.
T Consensus 199 ~~~~~~~Dp--RV~vvi~Da~~fL-----------------~--~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~ 257 (374)
T PRK01581 199 LNKSAFFDN--RVNVHVCDAKEFL-----------------S--SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATF 257 (374)
T ss_pred hccccCCCC--ceEEEECcHHHHH-----------------H--hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHh
Confidence 11122222 5778888876321 0 1246899999986421 1 24689999999
Q ss_pred cCCCeEEEEeccCCCCHHH----HHHHHhhccccc------eeeecCCEEEEEEEEccc
Q 026513 185 AKPGAVVGISGILSEQLPH----IINRYSEFLEDI------LVSEMDDWTCVSGKKKRV 233 (237)
Q Consensus 185 L~~gG~liis~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~w~~~~~~~~~~ 233 (237)
|+|||++++..-....... +...++..|-.+ .....+.|...++++...
T Consensus 258 LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~ 316 (374)
T PRK01581 258 LTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAY 316 (374)
T ss_pred cCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCcc
Confidence 9999999885321111122 223333222111 112344599999987543
No 140
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.30 E-value=1.3e-11 Score=104.51 Aligned_cols=105 Identities=15% Similarity=0.232 Sum_probs=73.0
Q ss_pred CCCeEEEEcCcchH----HHHHHHHh-C-----CCeEEEEeCCHHHHHHHHHHHH----HcCCCCC--------------
Q 026513 70 GGELFLDYGTGSGI----LGIAAIKF-G-----AAMSVGADIDPQAIKSAHQNAA----LNNIGPK-------------- 121 (237)
Q Consensus 70 ~~~~vLDlG~G~G~----~~~~la~~-~-----~~~v~~vD~s~~~i~~a~~~~~----~~~~~~~-------------- 121 (237)
++.+|+|+|||+|. +++.++.. + ..+|+|+|+|+.+++.|++.+. ..++...
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999995 45555543 2 3579999999999999998642 1111100
Q ss_pred -----cceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEE
Q 026513 122 -----KMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVV 191 (237)
Q Consensus 122 -----~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~l 191 (237)
.-.+.|.+.|+.+ ...+.++||+|+|..+++++ .++++++.+.|+|||+|
T Consensus 179 v~~~ir~~V~F~~~dl~~--------------------~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L 238 (264)
T smart00138 179 VKPELKERVRFAKHNLLA--------------------ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYL 238 (264)
T ss_pred EChHHhCcCEEeeccCCC--------------------CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEE
Confidence 0024555666542 22236789999997766543 36899999999999999
Q ss_pred EEe
Q 026513 192 GIS 194 (237)
Q Consensus 192 iis 194 (237)
+++
T Consensus 239 ~lg 241 (264)
T smart00138 239 FLG 241 (264)
T ss_pred EEE
Confidence 996
No 141
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.29 E-value=9.6e-11 Score=93.58 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=74.2
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCC---------eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAA---------MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM 137 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~---------~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 137 (237)
.+++..+||..||+|++.+.++.. ... +++|.|+++.+++.|++|+...++.. .+.+.+.|+.+..
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~---~i~~~~~D~~~l~- 101 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED---YIDFIQWDARELP- 101 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG---GEEEEE--GGGGG-
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC---ceEEEecchhhcc-
Confidence 467889999999999999988754 222 38899999999999999999988865 4778888887321
Q ss_pred cccccccccccccccccCCCCCCceeEEEEeCCh-----------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513 138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-----------NPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-----------~~~~~~l~~~~~~L~~gG~liis 194 (237)
...+++|+|++|||+ ..+..+++.+.+.+++..+++++
T Consensus 102 -------------------~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 102 -------------------LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp -------------------GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred -------------------cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 235799999999995 33457789999999995555554
No 142
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.29 E-value=4.8e-11 Score=98.21 Aligned_cols=119 Identities=12% Similarity=0.107 Sum_probs=81.5
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC-----------CcceEEeccCccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP-----------KKMKLHLVPDRTFTASM 137 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~-----------~~~~v~~~~~d~~~~~~ 137 (237)
.++.+|||+|||.|..++.++..|.. |+|+|+|+.+++.+.. .+++.. ...++.+.++|+++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~- 110 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT- 110 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC-
Confidence 45779999999999999999998665 9999999999998642 223221 1124777888887321
Q ss_pred cccccccccccccccccCCCCCCceeEEEEeC-----ChHHHHHHHHHHhHhcCCCeEEEEecc-C----------CCCH
Q 026513 138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANI-----LLNPLLQLADHIVSYAKPGAVVGISGI-L----------SEQL 201 (237)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~-----~~~~~~~~l~~~~~~L~~gG~liis~~-~----------~~~~ 201 (237)
....+.||+|+.-. +.....++++.+.++|+|||.+++.++ . .-+.
T Consensus 111 ------------------~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~ 172 (218)
T PRK13255 111 ------------------AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSD 172 (218)
T ss_pred ------------------cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCH
Confidence 11125799998433 334446789999999999997554211 1 1235
Q ss_pred HHHHHHHhh
Q 026513 202 PHIINRYSE 210 (237)
Q Consensus 202 ~~~~~~~~~ 210 (237)
.++...+..
T Consensus 173 ~el~~~~~~ 181 (218)
T PRK13255 173 EEVEALYAG 181 (218)
T ss_pred HHHHHHhcC
Confidence 667666665
No 143
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.29 E-value=5.4e-11 Score=97.47 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=79.8
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.++.+|||+|||+|.++..+++... .+++++|+++.+++.++++.. ... ++.++.+|..+.
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~----~i~~~~~d~~~~----------- 100 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPL----NIEFIQADAEAL----------- 100 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCC----CceEEecchhcC-----------
Confidence 4688999999999999998887644 589999999999999998865 111 366777877531
Q ss_pred ccccccccCCCCCCceeEEEEeCChHH---HHHHHHHHhHhcCCCeEEEEeccC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNP---LLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
....++||+|+++..+++ ...+++.+.+.|+|||.+++.++.
T Consensus 101 ---------~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 101 ---------PFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred ---------CCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 122468999999776543 456789999999999999987653
No 144
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.29 E-value=2.2e-11 Score=107.54 Aligned_cols=127 Identities=17% Similarity=0.269 Sum_probs=98.8
Q ss_pred EEeCcccccCCCCchhHHHHHHHHHhhccC--CCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 41 IILNPGLAFGSGEHATTKLCLLLLRRLIKG--GELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 41 ~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~--~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
+--+|.|.|. +..+-+++..+.....+ +.+|||+.||+|..++.++.. |..+|+++|+++.+++.+++|++.|
T Consensus 16 vFYNP~~~~n---RDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N 92 (374)
T TIGR00308 16 VFYNPRMQFN---RDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN 92 (374)
T ss_pred cccCchhhcc---ccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4557777777 55566555554432221 358999999999999999876 6789999999999999999999999
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
++.+ +.++++|..... .. ...+||+|+.|| +.....+++.+.+.+++||.|+++
T Consensus 93 ~~~~----~~v~~~Da~~~l-----------------~~--~~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 93 SVEN----IEVPNEDAANVL-----------------RY--RNRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCCc----EEEEchhHHHHH-----------------HH--hCCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 8764 788889876321 11 135799999999 454457889999999999999996
No 145
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.28 E-value=9.2e-11 Score=97.81 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=94.5
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.||.+|||.|+|+|.++..+++. +..+|+..|+.++.++.|++|++..++.. .+.+.+.|+.+....
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~---~v~~~~~Dv~~~g~~------- 107 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDD---NVTVHHRDVCEEGFD------- 107 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCT---TEEEEES-GGCG--S-------
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCC---CceeEecceeccccc-------
Confidence 689999999999999999999974 56899999999999999999999999864 388889998631111
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhc-CCCeEEEEeccCCCCHHHHHHHHhhc-cccceeee
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYA-KPGAVVGISGILSEQLPHIINRYSEF-LEDILVSE 219 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L-~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~~~ 219 (237)
. ..+..+|.||.+.|-.+ ..+..+.+.| ++||++.+-.--.++.......+++. |..+++.+
T Consensus 108 ---------~-~~~~~~DavfLDlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 108 ---------E-ELESDFDAVFLDLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp ---------T-T-TTSEEEEEEESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ---------c-cccCcccEEEEeCCCHH--HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEE
Confidence 0 11368999999997653 4567788899 89999987544455666666666664 66665543
No 146
>PTZ00146 fibrillarin; Provisional
Probab=99.28 E-value=2.5e-10 Score=96.95 Aligned_cols=142 Identities=17% Similarity=0.147 Sum_probs=90.5
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+|||+|||+|.++..++.. + ..+|+++|+++.+++...+.+... .| +.++..|...+.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N----I~~I~~Da~~p~--------- 194 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN----IVPIIEDARYPQ--------- 194 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC----CEEEECCccChh---------
Confidence 578999999999999999999976 3 468999999998765554444322 22 667778865211
Q ss_pred cccccccccCCCCCCceeEEEEeCChHH-HHHHHHHHhHhcCCCeEEEEe----cc-CCCCHHHH----HHHHhhc-ccc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNP-LLQLADHIVSYAKPGAVVGIS----GI-LSEQLPHI----INRYSEF-LED 214 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~-~~~~l~~~~~~L~~gG~liis----~~-~~~~~~~~----~~~~~~~-~~~ 214 (237)
.... ..+.+|+|+++..... ...++.++.++|||||.+++. ++ ....+.++ ...+.+. |+.
T Consensus 195 ------~y~~--~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~ 266 (293)
T PTZ00146 195 ------KYRM--LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKP 266 (293)
T ss_pred ------hhhc--ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCce
Confidence 0000 1347999999886433 334566889999999999994 22 22233343 3445543 766
Q ss_pred ceeeecC----CEEEEEEEEcc
Q 026513 215 ILVSEMD----DWTCVSGKKKR 232 (237)
Q Consensus 215 ~~~~~~~----~w~~~~~~~~~ 232 (237)
++..+.. .-.+++++.++
T Consensus 267 ~e~v~L~Py~~~h~~v~~~~~~ 288 (293)
T PTZ00146 267 KEQLTLEPFERDHAVVIGVYRP 288 (293)
T ss_pred EEEEecCCccCCcEEEEEEEcC
Confidence 6554432 33444545443
No 147
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.28 E-value=3.2e-11 Score=110.25 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=77.5
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+++... ... ++.++++|+.+..
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~--~~~----~i~~~~~d~~~~~------------- 96 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING--HYK----NVKFMCADVTSPD------------- 96 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc--cCC----ceEEEEecccccc-------------
Confidence 5679999999999999999987 4679999999999987765321 122 3777788874211
Q ss_pred cccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEe
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis 194 (237)
...++.+||+|+++.+++++ ..+++++.+.|+|||++++.
T Consensus 97 -----~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 97 -----LNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred -----cCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 11235789999999987763 56899999999999999985
No 148
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=2.2e-11 Score=97.12 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=83.0
Q ss_pred eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE-eccCccccccccccccccccccccc
Q 026513 73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH-LVPDRTFTASMNERVDGVVEDLSSH 151 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~~~~~ 151 (237)
.||++|||+|..=...-..+..+|+++|.++.|.+.|.+.+.++.-. ++. |+.++..+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~----~~~~fvva~ge~----------------- 137 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL----QVERFVVADGEN----------------- 137 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc----ceEEEEeechhc-----------------
Confidence 47999999997655554456788999999999999999998877433 254 77787652
Q ss_pred cccCCCCCCceeEEEEeCChH---HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHH
Q 026513 152 KIRGISQTEKYDVVIANILLN---PLLQLADHIVSYAKPGAVVGISGILSEQLPHIIN 206 (237)
Q Consensus 152 ~~~~~~~~~~fD~I~~n~~~~---~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~ 206 (237)
+..+ ++++||.|++...+- ...+.++++.++|+|||++++......+-..+..
T Consensus 138 -l~~l-~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~ 193 (252)
T KOG4300|consen 138 -LPQL-ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNR 193 (252)
T ss_pred -Cccc-ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHH
Confidence 3233 478999999988753 3457789999999999999997655444333333
No 149
>PRK03612 spermidine synthase; Provisional
Probab=99.28 E-value=3.6e-11 Score=110.87 Aligned_cols=142 Identities=18% Similarity=0.272 Sum_probs=97.3
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHc-----CCCCCcceEEeccCcccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALN-----NIGPKKMKLHLVPDRTFTASMNERVD 142 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~-----~~~~~~~~v~~~~~d~~~~~~~~~~~ 142 (237)
++.++|||+|||+|..+..+++++. .+++++|+|+++++.++++.... ...+. +++++.+|..+..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dp--rv~vi~~Da~~~l------ 367 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDP--RVTVVNDDAFNWL------ 367 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCC--ceEEEEChHHHHH------
Confidence 4567999999999999999888755 79999999999999999853211 12212 4778888876311
Q ss_pred ccccccccccccCCCCCCceeEEEEeCChHH--------HHHHHHHHhHhcCCCeEEEEecc---C-CCCHHHHHHHHhh
Q 026513 143 GVVEDLSSHKIRGISQTEKYDVVIANILLNP--------LLQLADHIVSYAKPGAVVGISGI---L-SEQLPHIINRYSE 210 (237)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--------~~~~l~~~~~~L~~gG~liis~~---~-~~~~~~~~~~~~~ 210 (237)
.. ..++||+|++|++... ..++++.+.+.|+|||.+++... . .....++.+.+++
T Consensus 368 -----------~~--~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~ 434 (521)
T PRK03612 368 -----------RK--LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA 434 (521)
T ss_pred -----------Hh--CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 11 1468999999976321 13678999999999999998532 1 2222344555554
Q ss_pred c-c----ccceeeecCCEEEEEEEEc
Q 026513 211 F-L----EDILVSEMDDWTCVSGKKK 231 (237)
Q Consensus 211 ~-~----~~~~~~~~~~w~~~~~~~~ 231 (237)
. | -...+...+.|..+.++|+
T Consensus 435 ~gf~v~~~~~~vps~g~w~f~~as~~ 460 (521)
T PRK03612 435 AGLATTPYHVNVPSFGEWGFVLAGAG 460 (521)
T ss_pred cCCEEEEEEeCCCCcchhHHHeeeCC
Confidence 4 4 1112245589999888664
No 150
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.27 E-value=5.7e-11 Score=98.53 Aligned_cols=103 Identities=23% Similarity=0.332 Sum_probs=79.7
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...+.. +.+...+..+..
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~------------ 108 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLK-----IDYRQTTAEELA------------ 108 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCc-----eEEEecCHHHhh------------
Confidence 467899999999999999888774 56999999999999999988766542 556666654210
Q ss_pred ccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~ 196 (237)
. ...++||+|++...+++. ..++..+.+.|+|||.++++..
T Consensus 109 ------~-~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 109 ------A-EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ------h-hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 0 124689999997765543 4678999999999999999754
No 151
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.27 E-value=1.2e-10 Score=95.87 Aligned_cols=103 Identities=22% Similarity=0.277 Sum_probs=80.6
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
.+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+..+ +.+...|..+..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~----~~~~~~d~~~~~------------- 106 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLK----IEYRCTSVEDLA------------- 106 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc----eEEEeCCHHHhh-------------
Confidence 377999999999999998887654 59999999999999999988776532 666677754211
Q ss_pred cccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEecc
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis~~ 196 (237)
.....+||+|+++..+++. ..++..+.+.|+|||.++++..
T Consensus 107 ------~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 107 ------EKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ------cCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 1113689999998766544 4678999999999999998754
No 152
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.26 E-value=2.1e-11 Score=100.26 Aligned_cols=129 Identities=19% Similarity=0.191 Sum_probs=84.7
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-HHHHcCCCC-------CcceEEeccCccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQ-NAALNNIGP-------KKMKLHLVPDRTFTASMNE 139 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~-~~~~~~~~~-------~~~~v~~~~~d~~~~~~~~ 139 (237)
..++.+||..|||.|.-...|+..|. +|+|+|+|+.+++.+.+ +........ ..-++.+.++|+++...
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~-- 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP-- 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG--
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh--
Confidence 45677999999999999999999976 69999999999999843 221111110 01136788999884221
Q ss_pred cccccccccccccccCCCCCCceeEEEEeC-----ChHHHHHHHHHHhHhcCCCeEEEEeccC-----------CCCHHH
Q 026513 140 RVDGVVEDLSSHKIRGISQTEKYDVVIANI-----LLNPLLQLADHIVSYAKPGAVVGISGIL-----------SEQLPH 203 (237)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~-----~~~~~~~~l~~~~~~L~~gG~liis~~~-----------~~~~~~ 203 (237)
...++||+|+--. +.....++.+.+.++|+|||.+++.++. .-...+
T Consensus 112 -----------------~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~e 174 (218)
T PF05724_consen 112 -----------------EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEE 174 (218)
T ss_dssp -----------------SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHH
T ss_pred -----------------hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHH
Confidence 1125899998533 3355568899999999999995443221 223667
Q ss_pred HHHHHhhccccce
Q 026513 204 IINRYSEFLEDIL 216 (237)
Q Consensus 204 ~~~~~~~~~~~~~ 216 (237)
+...+.+.|+...
T Consensus 175 v~~l~~~~f~i~~ 187 (218)
T PF05724_consen 175 VRELFGPGFEIEE 187 (218)
T ss_dssp HHHHHTTTEEEEE
T ss_pred HHHHhcCCcEEEE
Confidence 7777776665443
No 153
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.26 E-value=1.1e-10 Score=97.59 Aligned_cols=111 Identities=11% Similarity=0.196 Sum_probs=88.4
Q ss_pred CCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
+.++|||+|+++|+-++.++.. ...+++.+|.++...+.|++++...|+.+ +++++.++..+. +..
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~---~I~~~~G~a~e~---------L~~ 146 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAH---KIDFREGPALPV---------LDQ 146 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC---ceEEEeccHHHH---------HHH
Confidence 4568999999999999988863 35689999999999999999999999876 688999987631 111
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
+ ...-...++||+||++..-..+..++..+.++|+|||.+++..+
T Consensus 147 l----~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 147 M----IEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred H----HhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 0 00000136899999999888888999999999999999998644
No 154
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.25 E-value=6.9e-11 Score=101.79 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=85.7
Q ss_pred hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-ccccccccccccccc
Q 026513 67 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGVV 145 (237)
Q Consensus 67 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~ 145 (237)
..++|..|||..||||++.+.+...|.. ++|.|++..|++-|+.|++..++.. ..+... |+...+
T Consensus 194 ~v~~G~~vlDPFcGTGgiLiEagl~G~~-viG~Did~~mv~gak~Nl~~y~i~~----~~~~~~~Da~~lp--------- 259 (347)
T COG1041 194 RVKRGELVLDPFCGTGGILIEAGLMGAR-VIGSDIDERMVRGAKINLEYYGIED----YPVLKVLDATNLP--------- 259 (347)
T ss_pred ccccCCEeecCcCCccHHHHhhhhcCce-EeecchHHHHHhhhhhhhhhhCcCc----eeEEEecccccCC---------
Confidence 3678999999999999999999988655 9999999999999999999998775 545555 766321
Q ss_pred cccccccccCCCCCCceeEEEEeCCh------------HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILL------------NPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.++.++|.|+++||+ ..+.++++.+.++|++||++++...
T Consensus 260 -----------l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 260 -----------LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -----------CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 223469999999994 3356789999999999999998644
No 155
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.25 E-value=1.5e-10 Score=100.19 Aligned_cols=115 Identities=23% Similarity=0.187 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC-CcceEEeccCccc
Q 026513 56 TTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP-KKMKLHLVPDRTF 133 (237)
Q Consensus 56 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~-~~~~v~~~~~d~~ 133 (237)
+.+.++.++... ..++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.|++.|++++....... ....+.+...|+.
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 334444554332 1357899999999999999999885 579999999999999999987542210 0113566666653
Q ss_pred cccccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513 134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+ +++||+|+|..++.++ ..++..+.. +.++ .+++++.
T Consensus 208 ---------------------~l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g-~liIs~~ 250 (315)
T PLN02585 208 ---------------------SL--SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK-RLIISFA 250 (315)
T ss_pred ---------------------hc--CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC-EEEEEeC
Confidence 11 4689999987665433 234555554 3454 4455543
No 156
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.24 E-value=6e-11 Score=96.24 Aligned_cols=171 Identities=18% Similarity=0.172 Sum_probs=120.9
Q ss_pred ceeEEeCcc-cccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 38 ATNIILNPG-LAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 38 ~~~~~~~~~-~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
..+++|+.- |.-..+..|........-.-..+.|.+|||.++|-|+.++.+++.|+.+|+.+|.+|..++.|+-|-...
T Consensus 101 ~PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr 180 (287)
T COG2521 101 APTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSR 180 (287)
T ss_pred CCeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCc
Confidence 346677665 7766666777666655543335579999999999999999999999999999999999999998876555
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeE
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAV 190 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~ 190 (237)
++... .++++.+|..+. + .-.++.+||+|+-+||+-.. .++..++.+.|+|||.
T Consensus 181 ~l~~~--~i~iilGD~~e~-----------------V-~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGr 240 (287)
T COG2521 181 ELFEI--AIKIILGDAYEV-----------------V-KDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGR 240 (287)
T ss_pred ccccc--ccEEecccHHHH-----------------H-hcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCc
Confidence 54432 468899998731 1 22347899999999995322 3678999999999999
Q ss_pred EEEe-ccC------CCCHHHHHHHHhhc-cccceeeecCCEEEEEEEE
Q 026513 191 VGIS-GIL------SEQLPHIINRYSEF-LEDILVSEMDDWTCVSGKK 230 (237)
Q Consensus 191 liis-~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~ 230 (237)
++.- +.. .+-...+...+..- |..+ ....+|.-+++.|
T Consensus 241 lFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v--~~~~~~~gv~A~k 286 (287)
T COG2521 241 LFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV--KKVREALGVVAVK 286 (287)
T ss_pred EEEEeCCCCcccccCChhHHHHHHHHhcCceee--eeehhccceEEec
Confidence 9862 221 22345666666654 5433 3444555555444
No 157
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.24 E-value=3.7e-11 Score=97.08 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=69.7
Q ss_pred HHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513 64 LRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG 143 (237)
Q Consensus 64 l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 143 (237)
+...++++.+|||+|||+|.++..++......++|+|+++.+++.++++ + +.++.+|+.+.
T Consensus 7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~-------~~~~~~d~~~~-------- 67 (194)
T TIGR02081 7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G-------VNVIQGDLDEG-------- 67 (194)
T ss_pred HHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C-------CeEEEEEhhhc--------
Confidence 3344567889999999999999888766556789999999999888642 2 34556665320
Q ss_pred cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
+ ...++++||+|+++.+++++.+....+..++++++.++++
T Consensus 68 ---------l-~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~ 108 (194)
T TIGR02081 68 ---------L-EAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIVS 108 (194)
T ss_pred ---------c-cccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEE
Confidence 0 1123568999999998887754433344445555655553
No 158
>PRK06202 hypothetical protein; Provisional
Probab=99.23 E-value=9e-11 Score=97.44 Aligned_cols=102 Identities=24% Similarity=0.328 Sum_probs=71.7
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh----C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF----G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG 143 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~----~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 143 (237)
.++.+|||+|||+|.++..++.. | ..+|+|+|+|+.+++.|+++....++. +.....+..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~~~~~~l---------- 123 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVT-----FRQAVSDEL---------- 123 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCe-----EEEEecccc----------
Confidence 45679999999999998887742 2 358999999999999999876544332 332222221
Q ss_pred cccccccccccCCCCCCceeEEEEeCChHHHH-----HHHHHHhHhcCCCeEEEEeccCCC
Q 026513 144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLL-----QLADHIVSYAKPGAVVGISGILSE 199 (237)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~-----~~l~~~~~~L~~gG~liis~~~~~ 199 (237)
.. .+++||+|+++..++++. .+++++.+.++ |.+++..+...
T Consensus 124 -----------~~-~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 124 -----------VA-EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred -----------cc-cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 11 257899999998876653 47888888887 56666554433
No 159
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.23 E-value=1.3e-10 Score=95.94 Aligned_cols=106 Identities=23% Similarity=0.278 Sum_probs=76.0
Q ss_pred HHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513 59 LCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM 137 (237)
Q Consensus 59 ~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 137 (237)
.+...+... ..++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|++++...+..+ ++.+..+|..
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~---~i~~~~~d~~---- 122 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAG---NITFEVGDLE---- 122 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcc---CcEEEEcCch----
Confidence 344444331 34678999999999999999988754 59999999999999999988776632 3777777742
Q ss_pred cccccccccccccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEE
Q 026513 138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVV 191 (237)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~l 191 (237)
. ..++||+|++..++++ ...+++.+.+.+++++.+
T Consensus 123 -----------------~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 123 -----------------S--LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred -----------------h--ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 1 1468999999776643 235667777766544443
No 160
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.23 E-value=7.1e-11 Score=102.74 Aligned_cols=123 Identities=22% Similarity=0.217 Sum_probs=84.3
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC------CCCcceEEeccCccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNI------GPKKMKLHLVPDRTFTASMNERVDG 143 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~ 143 (237)
++.+|||+|||-|+-..-....+...++|+|++...|+.|+++.....- ....+...++.+|.+...+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~----- 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR----- 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH-----
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh-----
Confidence 7889999999999888877777889999999999999999998832110 01123567788887743221
Q ss_pred cccccccccccCCCC-CCceeEEEEeCChHHH-------HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513 144 VVEDLSSHKIRGISQ-TEKYDVVIANILLNPL-------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 210 (237)
Q Consensus 144 ~~~~~~~~~~~~~~~-~~~fD~I~~n~~~~~~-------~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~ 210 (237)
..+.+ ..+||+|-|...+|+. +.++.++...|+|||+++... .+...+...+..
T Consensus 137 ----------~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~---~d~~~i~~~l~~ 198 (331)
T PF03291_consen 137 ----------EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT---PDSDEIVKRLRE 198 (331)
T ss_dssp ----------CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE---E-HHHHHCCHHC
T ss_pred ----------hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe---cCHHHHHHHHHh
Confidence 12222 2599999999887653 578999999999999999973 444556555544
No 161
>PLN02823 spermine synthase
Probab=99.22 E-value=6e-10 Score=97.13 Aligned_cols=145 Identities=17% Similarity=0.251 Sum_probs=99.3
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
+..++||.+|+|.|..+..+.+. +..+++++|+++.+++.|++.+..++-....-+++++.+|..... +
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---------~- 171 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---------E- 171 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---------h-
Confidence 34578999999999999988875 567899999999999999998754321111125788889887421 0
Q ss_pred cccccccCCCCCCceeEEEEeCCh--------HH-HHHHHH-HHhHhcCCCeEEEEecc----CC--CCHHHHHHHHhhc
Q 026513 148 LSSHKIRGISQTEKYDVVIANILL--------NP-LLQLAD-HIVSYAKPGAVVGISGI----LS--EQLPHIINRYSEF 211 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~--------~~-~~~~l~-~~~~~L~~gG~liis~~----~~--~~~~~~~~~~~~~ 211 (237)
. ..++||+|+++.+- +. ..++++ .+.+.|+|||++++..- +. .....+...++..
T Consensus 172 -------~--~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v 242 (336)
T PLN02823 172 -------K--RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV 242 (336)
T ss_pred -------h--CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh
Confidence 1 24689999998421 11 246787 89999999999987521 11 1134455556665
Q ss_pred cccceee------ecCCEEEEEEEEcc
Q 026513 212 LEDILVS------EMDDWTCVSGKKKR 232 (237)
Q Consensus 212 ~~~~~~~------~~~~w~~~~~~~~~ 232 (237)
|..+... ..+.|..+++++.+
T Consensus 243 F~~v~~y~~~vPsf~~~w~f~~aS~~~ 269 (336)
T PLN02823 243 FKYVVPYTAHVPSFADTWGWVMASDHP 269 (336)
T ss_pred CCCEEEEEeecCCCCCceEEEEEeCCc
Confidence 6555442 23569999998754
No 162
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.22 E-value=5.5e-11 Score=102.77 Aligned_cols=84 Identities=25% Similarity=0.317 Sum_probs=60.4
Q ss_pred CCCeEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEecc-Ccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVP-DRTFTASMNERVDGVVE 146 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~ 146 (237)
++.++||||||+|.+...++ +....+++|+|+++.+++.|++|+..+ ++.. ++.+.. .+..+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~---~I~~~~~~~~~~i----------- 179 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNG---AIRLRLQKDSKAI----------- 179 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcC---cEEEEEccchhhh-----------
Confidence 45799999999987766665 445678999999999999999999999 6765 355532 222110
Q ss_pred ccccccccCC-CCCCceeEEEEeCChHH
Q 026513 147 DLSSHKIRGI-SQTEKYDVVIANILLNP 173 (237)
Q Consensus 147 ~~~~~~~~~~-~~~~~fD~I~~n~~~~~ 173 (237)
.... ...++||+|+||||++.
T Consensus 180 ------~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 180 ------FKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred ------hhcccccCCceEEEEeCCCCcC
Confidence 0011 13568999999999743
No 163
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.20 E-value=9.6e-11 Score=94.80 Aligned_cols=119 Identities=16% Similarity=0.203 Sum_probs=88.3
Q ss_pred CCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
...+||||||.|.+.+.+|. .+...++|+|+....+..+.+.+...+++| +.++++|+..
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N----v~~~~~da~~--------------- 78 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN----VRFLRGDARE--------------- 78 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS----EEEEES-CTT---------------
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc----eEEEEccHHH---------------
Confidence 34899999999999999885 588899999999999999999999999997 9999999763
Q ss_pred cccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513 150 SHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 210 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~ 210 (237)
.+..+.+++++|-|+.+.|=.+ ...++..+.+.|+|||.+.+.+-..+-.......+..
T Consensus 79 --~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 79 --LLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp --HHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred --HHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 1223344689999999887322 2478999999999999999964444444444444444
No 164
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.20 E-value=5.6e-11 Score=96.19 Aligned_cols=126 Identities=21% Similarity=0.353 Sum_probs=83.9
Q ss_pred ceeEEeCcc-cccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHH
Q 026513 38 ATNIILNPG-LAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAAL 115 (237)
Q Consensus 38 ~~~~~~~~~-~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~ 115 (237)
...+.++.. ..|.++... .+ ..+.+...+|.+|+|+.||.|.+++.+++. ....|+++|++|.+++..++|++.
T Consensus 72 G~~f~~D~~kvyfs~rl~~-Er---~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~l 147 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLST-ER---RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRL 147 (200)
T ss_dssp TEEEEEETTTS---GGGHH-HH---HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHH
T ss_pred CEEEEEccceEEEccccHH-HH---HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHH
Confidence 356666665 444443222 22 222334678999999999999999999974 467799999999999999999999
Q ss_pred cCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEE
Q 026513 116 NNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 192 (237)
Q Consensus 116 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~li 192 (237)
|++.+ .+..+++|..+ +.....||.|+++.|-... .++..+..++++||.+-
T Consensus 148 Nkv~~---~i~~~~~D~~~---------------------~~~~~~~drvim~lp~~~~-~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 148 NKVEN---RIEVINGDARE---------------------FLPEGKFDRVIMNLPESSL-EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TT-TT---TEEEEES-GGG------------------------TT-EEEEEE--TSSGG-GGHHHHHHHEEEEEEEE
T ss_pred cCCCC---eEEEEcCCHHH---------------------hcCccccCEEEECChHHHH-HHHHHHHHHhcCCcEEE
Confidence 99986 47888999863 2226799999999875433 57788889999998763
No 165
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=7.8e-10 Score=91.11 Aligned_cols=126 Identities=12% Similarity=0.115 Sum_probs=87.0
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH-------cCC-CCCcceEEeccCcccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL-------NNI-GPKKMKLHLVPDRTFTASMNER 140 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~-~~~~~~v~~~~~d~~~~~~~~~ 140 (237)
.++.+||+.|||.|.-+..|+..|.. |+|+|+|+.+++.+.+.... ... ......+.+.++|+++....
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-- 118 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-- 118 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc--
Confidence 45689999999999999999999876 99999999999987552100 000 00112478889998842100
Q ss_pred ccccccccccccccCCCCCCceeEEEEe-----CChHHHHHHHHHHhHhcCCCeEEEEeccC----------CCCHHHHH
Q 026513 141 VDGVVEDLSSHKIRGISQTEKYDVVIAN-----ILLNPLLQLADHIVSYAKPGAVVGISGIL----------SEQLPHII 205 (237)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n-----~~~~~~~~~l~~~~~~L~~gG~liis~~~----------~~~~~~~~ 205 (237)
....++||+|+-- .+-+...++++.+.++|+|||.+++..+. .-...++.
T Consensus 119 ---------------~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~ 183 (226)
T PRK13256 119 ---------------ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELI 183 (226)
T ss_pred ---------------ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHH
Confidence 0113579998643 33455568899999999999999886442 12356777
Q ss_pred HHHhhcc
Q 026513 206 NRYSEFL 212 (237)
Q Consensus 206 ~~~~~~~ 212 (237)
..+.+.|
T Consensus 184 ~lf~~~~ 190 (226)
T PRK13256 184 KNFSAKI 190 (226)
T ss_pred HhccCCc
Confidence 7776654
No 166
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.14 E-value=3e-10 Score=92.68 Aligned_cols=134 Identities=22% Similarity=0.259 Sum_probs=79.3
Q ss_pred HHHHHHhhccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc-----
Q 026513 60 CLLLLRRLIKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF----- 133 (237)
Q Consensus 60 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~----- 133 (237)
.+..++.-.-.+..+|||||.+|.+++.+++ ++...++|+||++..|..|+++++...--...+.-.+...+-.
T Consensus 48 rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~i 127 (288)
T KOG2899|consen 48 RLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPI 127 (288)
T ss_pred hhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccc
Confidence 3444443333467899999999999999996 5888899999999999999998753210000000000000000
Q ss_pred -------cccccccccccccc-----cccccccCCCCCCceeEEEEeCC---------hHHHHHHHHHHhHhcCCCeEEE
Q 026513 134 -------TASMNERVDGVVED-----LSSHKIRGISQTEKYDVVIANIL---------LNPLLQLADHIVSYAKPGAVVG 192 (237)
Q Consensus 134 -------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~fD~I~~n~~---------~~~~~~~l~~~~~~L~~gG~li 192 (237)
.+...+-.++..-. +...++- ......||+|+|-.. =+.+..++.++.++|.|||+|+
T Consensus 128 s~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 128 SQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred cccccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 00000000000000 0000111 123568999998553 2667899999999999999999
Q ss_pred Ee
Q 026513 193 IS 194 (237)
Q Consensus 193 is 194 (237)
+.
T Consensus 207 vE 208 (288)
T KOG2899|consen 207 VE 208 (288)
T ss_pred Ec
Confidence 94
No 167
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.14 E-value=5.2e-10 Score=96.94 Aligned_cols=133 Identities=18% Similarity=0.238 Sum_probs=103.4
Q ss_pred eeEEeCcc-cccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513 39 TNIILNPG-LAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNN 117 (237)
Q Consensus 39 ~~~~~~~~-~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~ 117 (237)
..+.++.. ..|+.+....-..+... ..+|.+|+|..+|-|.+++.+|..+..+|+++|++|.+++..++|++.|+
T Consensus 160 ~~f~vD~~Kv~Fsprl~~ER~Rva~~----v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~ 235 (341)
T COG2520 160 CRFKVDVAKVYFSPRLSTERARVAEL----VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK 235 (341)
T ss_pred EEEEEchHHeEECCCchHHHHHHHhh----hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC
Confidence 56666666 56665554443333333 36699999999999999999999988889999999999999999999999
Q ss_pred CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
+.+ .+..+++|..+. ...-+.+|-|+.+.|-. ..+++..+.+.+++||.+-+-.+.
T Consensus 236 v~~---~v~~i~gD~rev--------------------~~~~~~aDrIim~~p~~-a~~fl~~A~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 236 VEG---RVEPILGDAREV--------------------APELGVADRIIMGLPKS-AHEFLPLALELLKDGGIIHYYEFV 291 (341)
T ss_pred ccc---eeeEEeccHHHh--------------------hhccccCCEEEeCCCCc-chhhHHHHHHHhhcCcEEEEEecc
Confidence 987 588999998731 11126899999988653 346778888999999999886654
Q ss_pred CC
Q 026513 198 SE 199 (237)
Q Consensus 198 ~~ 199 (237)
.+
T Consensus 292 ~e 293 (341)
T COG2520 292 PE 293 (341)
T ss_pred ch
Confidence 43
No 168
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.13 E-value=3.4e-10 Score=97.14 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=80.3
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
-.++.|||+|||+|.+++..|+.|+.+|+|+|.|.-+ +.|++.+..|++.+ .++++.+.+.+.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~---ii~vi~gkvEdi------------- 121 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLED---VITVIKGKVEDI------------- 121 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccc---eEEEeecceEEE-------------
Confidence 4689999999999999999999999999999999955 99999999999987 588888887632
Q ss_pred ccccccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEE
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~lii 193 (237)
.+ |.++.|+|++-.+-..+ ..++-.=-+.|+|||.++=
T Consensus 122 ------~L-P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 122 ------EL-PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ------ec-CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 12 25799999997753222 2233333478999999874
No 169
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.13 E-value=7.5e-10 Score=93.46 Aligned_cols=107 Identities=13% Similarity=0.222 Sum_probs=75.6
Q ss_pred cccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceE
Q 026513 47 LAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125 (237)
Q Consensus 47 ~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v 125 (237)
..+|.........+...+... +.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. .. ++
T Consensus 5 k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~~----~v 77 (258)
T PRK14896 5 KKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--AG----NV 77 (258)
T ss_pred CcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--CC----CE
Confidence 344544443344444444332 457889999999999999999988 46799999999999999988754 22 38
Q ss_pred EeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHh
Q 026513 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182 (237)
Q Consensus 126 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~ 182 (237)
.++++|+.+. . -..||.|++|+|++....++..+.
T Consensus 78 ~ii~~D~~~~---------------------~-~~~~d~Vv~NlPy~i~s~~~~~l~ 112 (258)
T PRK14896 78 EIIEGDALKV---------------------D-LPEFNKVVSNLPYQISSPITFKLL 112 (258)
T ss_pred EEEEeccccC---------------------C-chhceEEEEcCCcccCcHHHHHHH
Confidence 8889998631 1 135899999999875444444433
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.11 E-value=1e-09 Score=93.32 Aligned_cols=89 Identities=19% Similarity=0.215 Sum_probs=69.1
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
+.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++.. . +++++++|+.+...+
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~----~v~~i~~D~~~~~~~--------- 102 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---D----NLTIIEGDALKVDLS--------- 102 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---C----ceEEEEChhhcCCHH---------
Confidence 45778999999999999999998854 899999999999999887642 2 388899998642111
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHh
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSY 184 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~ 184 (237)
+-.+|.|++|+|+.....++.++...
T Consensus 103 -----------~~~~~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 103 -----------ELQPLKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred -----------HcCcceEEEeCCccchHHHHHHHHhc
Confidence 11169999999988777776666643
No 171
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.09 E-value=3.9e-10 Score=95.50 Aligned_cols=126 Identities=19% Similarity=0.171 Sum_probs=95.5
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCC--CcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGP--KKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
.+++..++|+|||-|+-.+..-+.|...++|+||.+..++.|++..+...-.. -.+.+.|+.+|.+...+.+
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d------ 188 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD------ 188 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH------
Confidence 35788999999999999988888889999999999999999999876432211 1124788999987543332
Q ss_pred cccccccccCC-CCCCceeEEEEeCChHH-------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 146 EDLSSHKIRGI-SQTEKYDVVIANILLNP-------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 146 ~~~~~~~~~~~-~~~~~fD~I~~n~~~~~-------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
.+ .++.+||+|-|...+|. .+-++.++...|+|||++|-. .+++..+...++..
T Consensus 189 ---------~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT---iPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 189 ---------LLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT---IPDSDVIIKRLRAG 250 (389)
T ss_pred ---------hccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe---cCcHHHHHHHHHhc
Confidence 22 12445999999776543 345789999999999999875 66778888888764
No 172
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.09 E-value=2.1e-09 Score=97.53 Aligned_cols=106 Identities=14% Similarity=0.142 Sum_probs=84.8
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
.++|.+|||+++|+|+-+..++.. +...+++.|+++.-++..++|+...|+.+ +.+...|....
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n----v~v~~~D~~~~---------- 176 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN----VALTHFDGRVF---------- 176 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe----EEEEeCchhhh----------
Confidence 468999999999999999988864 34689999999999999999999999886 77777776421
Q ss_pred cccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
... ....||.|++++|. ....+++..+.++|+|||+|+.|+.
T Consensus 177 --------~~~-~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 177 --------GAA-LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred --------hhh-chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 011 13579999999982 1225789999999999999999843
No 173
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.09 E-value=2.4e-09 Score=93.57 Aligned_cols=103 Identities=26% Similarity=0.317 Sum_probs=84.2
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCC---------------------------------C-------eEEEEeCCHHHHHH
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGA---------------------------------A-------MSVGADIDPQAIKS 108 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~---------------------------------~-------~v~~vD~s~~~i~~ 108 (237)
+++..++|.-||+|++.+.+|..+. . .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4567999999999999999886542 1 37799999999999
Q ss_pred HHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCC-CceeEEEEeCCh-----------HHHHH
Q 026513 109 AHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQT-EKYDVVIANILL-----------NPLLQ 176 (237)
Q Consensus 109 a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~I~~n~~~-----------~~~~~ 176 (237)
|+.|++..|+.. .++|.++|+.. +... +.+|+||||||+ ..+..
T Consensus 270 Ak~NA~~AGv~d---~I~f~~~d~~~---------------------l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~ 325 (381)
T COG0116 270 AKANARAAGVGD---LIEFKQADATD---------------------LKEPLEEYGVVISNPPYGERLGSEALVAKLYRE 325 (381)
T ss_pred HHHHHHhcCCCc---eEEEEEcchhh---------------------CCCCCCcCCEEEeCCCcchhcCChhhHHHHHHH
Confidence 999999999987 68999999863 2222 689999999995 24566
Q ss_pred HHHHHhHhcCCCeEEEEec
Q 026513 177 LADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 177 ~l~~~~~~L~~gG~liis~ 195 (237)
+.+.+++.++..+..++++
T Consensus 326 fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 326 FGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHhcCCceEEEEc
Confidence 7788888888888888863
No 174
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.09 E-value=1.1e-09 Score=93.97 Aligned_cols=112 Identities=18% Similarity=0.283 Sum_probs=79.6
Q ss_pred cccccCCCCchhHHHHHHHHHh-hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcc
Q 026513 45 PGLAFGSGEHATTKLCLLLLRR-LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM 123 (237)
Q Consensus 45 ~~~~f~~g~~~~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~ 123 (237)
|.-.+|...-.....+...+.. .+.++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...+...
T Consensus 10 ~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~--- 85 (294)
T PTZ00338 10 FNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLAS--- 85 (294)
T ss_pred cCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCC---
Confidence 3444554443333444444433 2467889999999999999999887 4579999999999999999988765322
Q ss_pred eEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHh
Q 026513 124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIV 182 (237)
Q Consensus 124 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~ 182 (237)
+++++++|+.+. ...+||+|++|+|+.....++-++.
T Consensus 86 ~v~ii~~Dal~~----------------------~~~~~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 86 KLEVIEGDALKT----------------------EFPYFDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred cEEEEECCHhhh----------------------cccccCEEEecCCcccCcHHHHHHH
Confidence 488999998631 1246899999999876665544444
No 175
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.9e-10 Score=86.83 Aligned_cols=89 Identities=22% Similarity=0.273 Sum_probs=70.8
Q ss_pred HHHHHHHhhc--cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513 59 LCLLLLRRLI--KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS 136 (237)
Q Consensus 59 ~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~ 136 (237)
-++..+.+.. -.|+.++|+|||+|-+....+..+...|+|+|++|++++.+.+|+....+. +.++++|..+
T Consensus 35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-----idlLqcdild-- 107 (185)
T KOG3420|consen 35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-----IDLLQCDILD-- 107 (185)
T ss_pred HHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-----hheeeeeccc--
Confidence 3444444322 358999999999999998888888999999999999999999999877665 6778888763
Q ss_pred ccccccccccccccccccCCCCCCceeEEEEeCChH
Q 026513 137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN 172 (237)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~ 172 (237)
.....+.||.++.|||+.
T Consensus 108 ------------------le~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 108 ------------------LELKGGIFDTAVINPPFG 125 (185)
T ss_pred ------------------hhccCCeEeeEEecCCCC
Confidence 223358999999999973
No 176
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.06 E-value=1.3e-09 Score=92.90 Aligned_cols=99 Identities=27% Similarity=0.352 Sum_probs=80.1
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
.++.|||+|||+|+++..+++.|+++|+++|.|. |.+.|++.+..|++.. ++.++.|-+.+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~---rItVI~GKiEd--------------- 237 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLAD---RITVIPGKIED--------------- 237 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccc---eEEEccCcccc---------------
Confidence 4789999999999999999999999999999998 8899999999988876 78888887653
Q ss_pred cccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEE
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~lii 193 (237)
....++.|+||+.|.-..+ .+-.-.+++.|+|.|.++-
T Consensus 238 ------ieLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 238 ------IELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ------ccCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 3335799999998863222 2222335689999999874
No 177
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.04 E-value=4.2e-09 Score=88.64 Aligned_cols=110 Identities=16% Similarity=0.272 Sum_probs=78.0
Q ss_pred cccccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcc
Q 026513 45 PGLAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM 123 (237)
Q Consensus 45 ~~~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~ 123 (237)
|...+|...-.....+...+... ..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++.. ..
T Consensus 3 ~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~--~~---- 75 (253)
T TIGR00755 3 PRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL--YE---- 75 (253)
T ss_pred CCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc--CC----
Confidence 33445544443344444444432 3567899999999999999999885 4699999999999999987643 22
Q ss_pred eEEeccCccccccccccccccccccccccccCCCCCCcee---EEEEeCChHHHHHHHHHHhH
Q 026513 124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYD---VVIANILLNPLLQLADHIVS 183 (237)
Q Consensus 124 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD---~I~~n~~~~~~~~~l~~~~~ 183 (237)
++.++.+|+.+.. -..+| +|++|+|++....++..+..
T Consensus 76 ~v~v~~~D~~~~~----------------------~~~~d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 76 RLEVIEGDALKVD----------------------LPDFPKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred cEEEEECchhcCC----------------------hhHcCCcceEEEcCChhhHHHHHHHHhc
Confidence 3778889876321 11455 99999999887777776665
No 178
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.8e-09 Score=86.46 Aligned_cols=116 Identities=22% Similarity=0.334 Sum_probs=87.9
Q ss_pred chhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CC--CeEEEEeCCHHHHHHHHHHHHHcC--------CCCCc
Q 026513 54 HATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GA--AMSVGADIDPQAIKSAHQNAALNN--------IGPKK 122 (237)
Q Consensus 54 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~--~~v~~vD~s~~~i~~a~~~~~~~~--------~~~~~ 122 (237)
......+++.|...+.||...||+|+|+|+++..+++. +. ...+|||.-++.++.+++|+...- +..+
T Consensus 66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~- 144 (237)
T KOG1661|consen 66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG- 144 (237)
T ss_pred hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC-
Confidence 45567777888777899999999999999999988853 33 334899999999999999987543 1112
Q ss_pred ceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 123 MKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 123 ~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
++.++.+|... -.....+||.|.+... ..++.+++...|++||.+++-
T Consensus 145 -~l~ivvGDgr~--------------------g~~e~a~YDaIhvGAa---a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 145 -ELSIVVGDGRK--------------------GYAEQAPYDAIHVGAA---ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred -ceEEEeCCccc--------------------cCCccCCcceEEEccC---ccccHHHHHHhhccCCeEEEe
Confidence 35677888763 2233579999999863 334557788899999999984
No 179
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.03 E-value=2.1e-09 Score=97.14 Aligned_cols=99 Identities=21% Similarity=0.358 Sum_probs=74.8
Q ss_pred CCeEEEEcCcchHHHHHHHHhC-----CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFG-----AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~-----~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+..|+|+|||+|.++..+++.+ ..+|+++|-++.++...++.+..++..+ +|+++.+|+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~---~V~vi~~d~r------------ 251 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGD---KVTVIHGDMR------------ 251 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTT---TEEEEES-TT------------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCC---eEEEEeCccc------------
Confidence 5789999999999988776543 5789999999999988888878888866 5999999986
Q ss_pred cccccccccCCCCCCceeEEEEeCC-----hHHHHHHHHHHhHhcCCCeEEEE
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~-----~~~~~~~l~~~~~~L~~gG~lii 193 (237)
.+....++|+||+-.. .+.+.+.+....+.|+|||.++=
T Consensus 252 ---------~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 252 ---------EVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp ---------TSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred ---------CCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 3444569999999554 23455778888899999998863
No 180
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.02 E-value=2.7e-09 Score=88.04 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=86.5
Q ss_pred CeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 72 ELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
..+||||||.|.+.+.+|+ .+...++|+|+....+..|.+.+...++.| +.+++.|+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N----lri~~~DA~~---------------- 109 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN----LRLLCGDAVE---------------- 109 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc----EEEEcCCHHH----------------
Confidence 4799999999999999886 478889999999999999999999999975 8899999863
Q ss_pred ccccCCCCCCceeEEEEeCC------hHH-----HHHHHHHHhHhcCCCeEEEEecc
Q 026513 151 HKIRGISQTEKYDVVIANIL------LNP-----LLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~------~~~-----~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+..+.++++.|-|+.+.| .|+ ...+++.+.+.|+|||.|.+.+-
T Consensus 110 -~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 110 -VLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -HHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 2234455669999999887 232 24679999999999999999643
No 181
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.01 E-value=2.3e-09 Score=90.41 Aligned_cols=124 Identities=12% Similarity=0.154 Sum_probs=90.8
Q ss_pred CCeEEEEcCcch----HHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHH-----cCCCCCcceEEeccCccccc
Q 026513 71 GELFLDYGTGSG----ILGIAAIKFG------AAMSVGADIDPQAIKSAHQNAAL-----NNIGPKKMKLHLVPDRTFTA 135 (237)
Q Consensus 71 ~~~vLDlG~G~G----~~~~~la~~~------~~~v~~vD~s~~~i~~a~~~~~~-----~~~~~~~~~v~~~~~d~~~~ 135 (237)
.-+|+.+||++| ++++.+.+.. .-+|+|+|+|..+++.|+..... .+++....+-.|..+....-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 568999999999 3444444432 35799999999999999986543 45554333334444432234
Q ss_pred cccccccccccccccccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEe
Q 026513 136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis 194 (237)
.+.+.++++|.=.+++++......+.||+|+|--++ ....+++..++..|+|||+|++.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 566778888888888888877556789999995543 34467899999999999999996
No 182
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.98 E-value=6.1e-10 Score=90.03 Aligned_cols=125 Identities=13% Similarity=0.175 Sum_probs=71.6
Q ss_pred CCCeEEEEcCcchH----HHHHHHHh---C---CCeEEEEeCCHHHHHHHHHHHH----HcCCCCCcceEEeccCccccc
Q 026513 70 GGELFLDYGTGSGI----LGIAAIKF---G---AAMSVGADIDPQAIKSAHQNAA----LNNIGPKKMKLHLVPDRTFTA 135 (237)
Q Consensus 70 ~~~~vLDlG~G~G~----~~~~la~~---~---~~~v~~vD~s~~~i~~a~~~~~----~~~~~~~~~~v~~~~~d~~~~ 135 (237)
+..+|+..||++|. +++.+... . .-+|+|+|+|+.+++.|++... ..+++....+-.|...+....
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34689999999993 33334341 1 2379999999999999998532 112221111111211111122
Q ss_pred cccccccccccccccccccCCCCCCceeEEEEeCChH-----HHHHHHHHHhHhcCCCeEEEEe
Q 026513 136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-----PLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-----~~~~~l~~~~~~L~~gG~liis 194 (237)
.+.+.+++.|.-.+.+++......++||+|+|--++- ...++++.+...|+|||+|+++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 3566677777777777777445567999999966653 3357899999999999999996
No 183
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.97 E-value=5.5e-09 Score=83.39 Aligned_cols=121 Identities=17% Similarity=0.282 Sum_probs=81.3
Q ss_pred CCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
++.++||+||++|+++..+.+.+ ..+|+|+|+.+. .+..+ +.++++|..+....+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~----~~~i~~d~~~~~~~~~i~----- 82 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN----VSFIQGDITNPENIKDIR----- 82 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT----EEBTTGGGEEEEHSHHGG-----
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc----eeeeecccchhhHHHhhh-----
Confidence 34899999999999999999886 688999999996 22333 778888886532221111
Q ss_pred cccccccCCC--CCCceeEEEEeCC-----------hHHH---HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 148 LSSHKIRGIS--QTEKYDVVIANIL-----------LNPL---LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 148 ~~~~~~~~~~--~~~~fD~I~~n~~-----------~~~~---~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
... ..+++|+|+|+.. .... ...+..+...|+|||.+++.-+......++...+..+
T Consensus 83 -------~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~ 155 (181)
T PF01728_consen 83 -------KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRC 155 (181)
T ss_dssp -------GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHH
T ss_pred -------hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhC
Confidence 111 1369999999983 1111 2335566678999999999877655546888888877
Q ss_pred ccccee
Q 026513 212 LEDILV 217 (237)
Q Consensus 212 ~~~~~~ 217 (237)
|..+..
T Consensus 156 F~~v~~ 161 (181)
T PF01728_consen 156 FSKVKI 161 (181)
T ss_dssp HHHEEE
T ss_pred CeEEEE
Confidence 765543
No 184
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.96 E-value=9.8e-09 Score=86.05 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513 55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 133 (237)
Q Consensus 55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~ 133 (237)
...+.+........+..++||-||-|.|..+..+.+++ ..+++++|+++.+++.|++.+.........-+++++.+|..
T Consensus 61 ~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~ 140 (246)
T PF01564_consen 61 IYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR 140 (246)
T ss_dssp HHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH
T ss_pred HHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH
Confidence 33444443333334567899999999999999998774 68899999999999999998765432211124777888876
Q ss_pred cccccccccccccccccccccCCCCCC-ceeEEEEeCCh------H-HHHHHHHHHhHhcCCCeEEEEe
Q 026513 134 TASMNERVDGVVEDLSSHKIRGISQTE-KYDVVIANILL------N-PLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fD~I~~n~~~------~-~~~~~l~~~~~~L~~gG~liis 194 (237)
... + .. .+ +||+|+++..- . ...++++.+.+.|+|||.+++.
T Consensus 141 ~~l---------~--------~~--~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 141 KFL---------K--------ET--QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp HHH---------H--------TS--SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred HHH---------H--------hc--cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 321 1 11 33 89999997652 1 1257899999999999999985
No 185
>PRK00536 speE spermidine synthase; Provisional
Probab=98.95 E-value=1.4e-08 Score=85.36 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=92.9
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc--CCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+..++||-+|.|.|..+..+.+++. +|+.+|+++.+++.+++.+... ...+.++++.. ...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~---~~~------------- 133 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLL------------- 133 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee---hhh-------------
Confidence 5568999999999999999999864 8999999999999999955432 33444433332 110
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe---ccC-CCCHHHHHHHHhhcccccee-----
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS---GIL-SEQLPHIINRYSEFLEDILV----- 217 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis---~~~-~~~~~~~~~~~~~~~~~~~~----- 217 (237)
. ...++||+||++.... ..+.+.+.+.|+|||.++.. .++ .+....+...++..|..+..
T Consensus 134 --------~-~~~~~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~v 202 (262)
T PRK00536 134 --------D-LDIKKYDLIICLQEPD--IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPL 202 (262)
T ss_pred --------h-ccCCcCCEEEEcCCCC--hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecC
Confidence 1 1136899999996433 46778899999999999993 222 22233445555555543332
Q ss_pred eecCCEEEEEEEEc
Q 026513 218 SEMDDWTCVSGKKK 231 (237)
Q Consensus 218 ~~~~~w~~~~~~~~ 231 (237)
...+.|+.+++++.
T Consensus 203 p~~g~wgf~~aS~~ 216 (262)
T PRK00536 203 RILSNKGYIYASFK 216 (262)
T ss_pred CCcchhhhheecCC
Confidence 33478999888764
No 186
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.95 E-value=8.3e-09 Score=83.28 Aligned_cols=116 Identities=23% Similarity=0.200 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
+.+..+++.+...-....-|||||||+|.-+..+...| -..+|+|+|+.|++.|.+.-.. -.++.+|+.+
T Consensus 35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e---------gdlil~DMG~ 104 (270)
T KOG1541|consen 35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE---------GDLILCDMGE 104 (270)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh---------cCeeeeecCC
Confidence 33444444443211125689999999999999888887 5689999999999999873221 1244566543
Q ss_pred ccccccccccccccccccccCCCCCCceeEEEEeCCh--------------HHHHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513 135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--------------NPLLQLADHIVSYAKPGAVVGISGILSE 199 (237)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--------------~~~~~~l~~~~~~L~~gG~liis~~~~~ 199 (237)
+ ..+..+.||-+|+-..+ ..+..++..+...|++|+..++.-+..+
T Consensus 105 G-------------------lpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 105 G-------------------LPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred C-------------------CCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 2 23446899999863332 2234678889999999999999755433
No 187
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.93 E-value=2.3e-09 Score=83.80 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=55.1
Q ss_pred eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513 73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK 152 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (237)
.|+|+.||.|..++.+|+. ..+|+++|+++..++.|+.|++..|+.. +++++++|+.+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~---~I~~i~gD~~~~----------------- 60 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVAD---NIDFICGDFFEL----------------- 60 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GG---GEEEEES-HHHH-----------------
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCC---cEEEEeCCHHHH-----------------
Confidence 6999999999999999998 6779999999999999999999999865 599999999841
Q ss_pred ccCCCCCCceeEEEEeCC
Q 026513 153 IRGISQTEKYDVVIANIL 170 (237)
Q Consensus 153 ~~~~~~~~~fD~I~~n~~ 170 (237)
+........+|+|+++||
T Consensus 61 ~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 61 LKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp GGGB------SEEEE---
T ss_pred HhhccccccccEEEECCC
Confidence 112221222899999998
No 188
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=3.3e-09 Score=86.61 Aligned_cols=112 Identities=13% Similarity=0.208 Sum_probs=79.8
Q ss_pred eEEEEcCcchHHHHHHHHh-CC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 73 LFLDYGTGSGILGIAAIKF-GA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la~~-~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
+||++|||.|.....+.+. +. -.++++|.||.+++..+++...+. + ++.....|+..+.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~----~~~afv~Dlt~~~------------- 135 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-S----RVEAFVWDLTSPS------------- 135 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-h----hhcccceeccchh-------------
Confidence 7999999999988887764 23 579999999999999998865543 1 2333444544321
Q ss_pred cccccCCCCCCceeEEEEeCC-----hHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHH
Q 026513 150 SHKIRGISQTEKYDVVIANIL-----LNPLLQLADHIVSYAKPGAVVGISGILSEQLPHII 205 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~-----~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~ 205 (237)
.......+++|+|++-.+ -..+...++++.++|||||.|++.++-..+...+.
T Consensus 136 ---~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR 193 (264)
T KOG2361|consen 136 ---LKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR 193 (264)
T ss_pred ---ccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh
Confidence 112334578898876443 35566789999999999999999877666554443
No 189
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.91 E-value=7.9e-10 Score=89.61 Aligned_cols=96 Identities=24% Similarity=0.320 Sum_probs=70.4
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
=.++||+|||||..+..+... ..+++|+|+|.+|++.|.++--... ..++|...+.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD~---------L~~Aea~~Fl-------------- 181 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYDT---------LYVAEAVLFL-------------- 181 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchHH---------HHHHHHHHHh--------------
Confidence 368999999999999998776 5679999999999999886522111 1122221100
Q ss_pred ccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513 151 HKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis 194 (237)
.....++||+|++.-++..+ ..++.-+..+|+|||.+.+|
T Consensus 182 ----~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 182 ----EDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred ----hhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence 11125789999998876655 45688899999999999997
No 190
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.91 E-value=1.7e-08 Score=96.38 Aligned_cols=105 Identities=24% Similarity=0.256 Sum_probs=75.0
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh-------------C------------------------------CCeEEEEeCCHHH
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF-------------G------------------------------AAMSVGADIDPQA 105 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~-------------~------------------------------~~~v~~vD~s~~~ 105 (237)
.++..++|.+||+|++.+.++.. + ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 56789999999999999887642 0 1258999999999
Q ss_pred HHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH-------HHHHHH
Q 026513 106 IKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN-------PLLQLA 178 (237)
Q Consensus 106 i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~-------~~~~~l 178 (237)
++.|++|+..+|+.. .+.+.++|+.+.. .....++||+|++|||+. ....+.
T Consensus 269 v~~A~~N~~~~g~~~---~i~~~~~D~~~~~------------------~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 269 IQAARKNARRAGVAE---LITFEVKDVADLK------------------NPLPKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred HHHHHHHHHHcCCCc---ceEEEeCChhhcc------------------cccccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 999999999999875 4788899987421 111235799999999962 122233
Q ss_pred HHHhHhc---CCCeEEEEe
Q 026513 179 DHIVSYA---KPGAVVGIS 194 (237)
Q Consensus 179 ~~~~~~L---~~gG~liis 194 (237)
..+...+ .+|+.+++-
T Consensus 328 ~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 328 SQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHhCCCCeEEEE
Confidence 3333333 388877663
No 191
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=7.6e-08 Score=84.82 Aligned_cols=122 Identities=19% Similarity=0.224 Sum_probs=89.5
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFG---AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV 144 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~---~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 144 (237)
..+|.+|||++++.|.-+..+++.. ...|+++|+++.-++..++|++..|+.+ +.++..|.....
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n----v~~~~~d~~~~~-------- 221 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN----VIVVNKDARRLA-------- 221 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc----eEEEeccccccc--------
Confidence 5789999999999999998888753 2456999999999999999999999987 666676654210
Q ss_pred ccccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhcCCCeEEEEe-ccC-
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGIS-GIL- 197 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L~~gG~liis-~~~- 197 (237)
.......+||.|++++|. ....+++..+.++|||||.|+.| |.+
T Consensus 222 ---------~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 222 ---------ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred ---------ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 011122369999999982 22357899999999999999998 433
Q ss_pred CCCHHHHH-HHHhh
Q 026513 198 SEQLPHII-NRYSE 210 (237)
Q Consensus 198 ~~~~~~~~-~~~~~ 210 (237)
.++-++.. ..+..
T Consensus 293 ~eENE~vV~~~L~~ 306 (355)
T COG0144 293 PEENEEVVERFLER 306 (355)
T ss_pred hhcCHHHHHHHHHh
Confidence 33333444 44444
No 192
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.6e-08 Score=80.30 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=93.3
Q ss_pred hccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513 67 LIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV 144 (237)
Q Consensus 67 ~~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 144 (237)
.+.+|.+|+|||+-+|..+..+++. + ...|+|+|+.|.. ...+ +.++++|+++....+
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~----V~~iq~d~~~~~~~~----- 101 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPG----VIFLQGDITDEDTLE----- 101 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCC----ceEEeeeccCccHHH-----
Confidence 3678999999999999999999875 2 2349999999832 2333 889999988644332
Q ss_pred ccccccccccCCCCCCceeEEEEeCCh--------HHHH------HHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILL--------NPLL------QLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 210 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~--------~~~~------~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~ 210 (237)
.+.......++|+|++++.. ++.. ..+..+...|+|||.+++..+......+++..++.
T Consensus 102 -------~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~ 174 (205)
T COG0293 102 -------KLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR 174 (205)
T ss_pred -------HHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence 11222334568999998753 3332 33566778999999999999999999999999998
Q ss_pred cccccee
Q 026513 211 FLEDILV 217 (237)
Q Consensus 211 ~~~~~~~ 217 (237)
+|..+..
T Consensus 175 ~F~~v~~ 181 (205)
T COG0293 175 LFRKVKI 181 (205)
T ss_pred hhceeEE
Confidence 8877765
No 193
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.89 E-value=2.8e-08 Score=80.78 Aligned_cols=109 Identities=14% Similarity=0.241 Sum_probs=88.3
Q ss_pred CCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
..+++||+|.=+|+-++..|.. ...+|+++|+++.+.+.+.+..+..++.. ++.++++...+ .+++++..
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~---KI~~i~g~a~e-----sLd~l~~~ 144 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDH---KITFIEGPALE-----SLDELLAD 144 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccc---eeeeeecchhh-----hHHHHHhc
Confidence 4679999999999888877753 46789999999999999999999999876 68999998763 23333222
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
. ..+.||++|.+.--..+..+..++.+++++||+|++..
T Consensus 145 ~---------~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 145 G---------ESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred C---------CCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEec
Confidence 1 35789999999877667788999999999999999954
No 194
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.86 E-value=1.2e-08 Score=88.27 Aligned_cols=123 Identities=28% Similarity=0.409 Sum_probs=79.1
Q ss_pred cCCCeEEEEcCcchHHHHHHHH--------hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIK--------FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNER 140 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~--------~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 140 (237)
.++.+|+|.+||+|.+...+.+ ....+++|+|+++.++..|+-++...+..... ..+..+|.+...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~--~~i~~~d~l~~~---- 118 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSN--INIIQGDSLEND---- 118 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBG--CEEEES-TTTSH----
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccc--cccccccccccc----
Confidence 4567899999999999888765 25678999999999999999998777655421 235566654211
Q ss_pred ccccccccccccccCCCCCCceeEEEEeCChHHH------------------------HHHHHHHhHhcCCCeEEEEe--
Q 026513 141 VDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL------------------------LQLADHIVSYAKPGAVVGIS-- 194 (237)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~------------------------~~~l~~~~~~L~~gG~liis-- 194 (237)
......+||+|++|||+... ..++..+...|++||++.+.
T Consensus 119 --------------~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 119 --------------KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --------------SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --------------ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 11124689999999995221 14678899999999986552
Q ss_pred -ccC-CC-CHHHHHHHHhhc
Q 026513 195 -GIL-SE-QLPHIINRYSEF 211 (237)
Q Consensus 195 -~~~-~~-~~~~~~~~~~~~ 211 (237)
+++ .. ....+.+.+...
T Consensus 185 ~~~L~~~~~~~~iR~~ll~~ 204 (311)
T PF02384_consen 185 NGFLFSSSSEKKIRKYLLEN 204 (311)
T ss_dssp HHHHHGSTHHHHHHHHHHHH
T ss_pred chhhhccchHHHHHHHHHhh
Confidence 343 22 245666666543
No 195
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.85 E-value=1.1e-08 Score=87.22 Aligned_cols=125 Identities=10% Similarity=0.157 Sum_probs=79.0
Q ss_pred CCeEEEEcCcchH----HHHHHHHh-C----CCeEEEEeCCHHHHHHHHHHHH----HcCCCCCcceEEeccCcc---cc
Q 026513 71 GELFLDYGTGSGI----LGIAAIKF-G----AAMSVGADIDPQAIKSAHQNAA----LNNIGPKKMKLHLVPDRT---FT 134 (237)
Q Consensus 71 ~~~vLDlG~G~G~----~~~~la~~-~----~~~v~~vD~s~~~i~~a~~~~~----~~~~~~~~~~v~~~~~d~---~~ 134 (237)
..+|+..||++|- +++.+... + .-+|+|+|+|+.+++.|++... ..+++....+-.|...+. ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999993 33333332 1 2469999999999999998632 112221111111211100 01
Q ss_pred ccccccccccccccccccccCC-CCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEec
Q 026513 135 ASMNERVDGVVEDLSSHKIRGI-SQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~ 195 (237)
..+.+.++++|.-.+.+++... ...++||+|+|..++.+ ..+++..+...|+|||+|+++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 2244556666666666666532 33578999999555433 4578999999999999999863
No 196
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.85 E-value=1.4e-08 Score=83.04 Aligned_cols=101 Identities=13% Similarity=0.170 Sum_probs=70.4
Q ss_pred CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513 72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH 151 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 151 (237)
..++|+|||+|.-++.++.+ ..+|+|+|+|+.|++.|++..... .+.........+..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~---y~~t~~~ms~~~~v------------------ 92 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVT---YCHTPSTMSSDEMV------------------ 92 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcc---cccCCccccccccc------------------
Confidence 38999999999777777777 788999999999999888653211 11111222222221
Q ss_pred cccCCCCCCceeEEEEeCChHHH--HHHHHHHhHhcCCCe-EEEEecc
Q 026513 152 KIRGISQTEKYDVVIANILLNPL--LQLADHIVSYAKPGA-VVGISGI 196 (237)
Q Consensus 152 ~~~~~~~~~~fD~I~~n~~~~~~--~~~l~~~~~~L~~gG-~liis~~ 196 (237)
.....+.+.|+|+|.-.+|++ .++.+.+.++||+.| .+.+-++
T Consensus 93 --~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 93 --DLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred --cccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEc
Confidence 112236799999999888887 478999999998877 5555443
No 197
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.83 E-value=7.6e-09 Score=85.50 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=36.5
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHH
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKS 108 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~ 108 (237)
.++.++||+|||+|.++..+++.|+.+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 4688999999999999999999998999999999988765
No 198
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.81 E-value=4.1e-08 Score=90.40 Aligned_cols=119 Identities=15% Similarity=0.083 Sum_probs=89.9
Q ss_pred CCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.+..+||||||.|.+...+|. .+...++|+|++...+..+.+.+...++.| +.++..|+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N----~~~~~~~~~~-------------- 408 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN----FLLFPNNLDL-------------- 408 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe----EEEEcCCHHH--------------
Confidence 456899999999999998885 577889999999999999888888888887 7777777531
Q ss_pred ccccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 210 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~ 210 (237)
+....++.++|.|+.+.|=.+ ...+++.+.+.|+|||.+.+.+-..+-.......+.+
T Consensus 409 ----~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 409 ----ILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred ----HHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 123345678999999887321 2467999999999999999964443334444444444
No 199
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.81 E-value=6e-08 Score=82.53 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=79.8
Q ss_pred CeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 72 ELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
++||-||-|.|..+..+.++ +..+++.+|+++..++.+++.+.........-++.++.+|..+. |+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~---------v~---- 144 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF---------LR---- 144 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH---------HH----
Confidence 69999999999999999887 47899999999999999999876443211123677888887631 11
Q ss_pred ccccCCCCCCceeEEEEeCC--hHH-----HHHHHHHHhHhcCCCeEEEEe
Q 026513 151 HKIRGISQTEKYDVVIANIL--LNP-----LLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~--~~~-----~~~~l~~~~~~L~~gG~liis 194 (237)
.. ..+||+|+++.. ..+ ...+++.+.+.|+++|+++..
T Consensus 145 ----~~--~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 145 ----DC--EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred ----hC--CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 12 348999998552 112 257899999999999999996
No 200
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.1e-07 Score=79.52 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=83.9
Q ss_pred ccCCCCchhHHHHHHHHHh-hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEE
Q 026513 48 AFGSGEHATTKLCLLLLRR-LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLH 126 (237)
Q Consensus 48 ~f~~g~~~~~~~~~~~l~~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~ 126 (237)
.||...-.....+...+.. .+.++.+|||||+|.|.+|..+++.+ .+|+++|+|+..++..++.... .. ++.
T Consensus 7 ~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~--~~----n~~ 79 (259)
T COG0030 7 RLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFAP--YD----NLT 79 (259)
T ss_pred CcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhccc--cc----ceE
Confidence 3444444444555555543 24568899999999999999999984 4599999999999998887652 22 488
Q ss_pred eccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCC--CeEEEE
Q 026513 127 LVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKP--GAVVGI 193 (237)
Q Consensus 127 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~--gG~lii 193 (237)
++++|+.....+ .. .+++.|++|.|+.....++.++...-.+ ..++.+
T Consensus 80 vi~~DaLk~d~~----------------~l---~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 80 VINGDALKFDFP----------------SL---AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred EEeCchhcCcch----------------hh---cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 999998743221 11 1789999999998777776655544333 444444
No 201
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.76 E-value=1.1e-07 Score=81.48 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=50.7
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
+.+|..++|.+||.|..+..+++.. ..+|+|+|.|+.+++.|++.+.. .. ++.++++|..+
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~----ri~~i~~~f~~ 79 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FG----RFTLVHGNFSN 79 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CC----cEEEEeCCHHH
Confidence 3577899999999999999998763 57899999999999999988754 22 48888888763
No 202
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.75 E-value=4.9e-08 Score=81.43 Aligned_cols=95 Identities=23% Similarity=0.393 Sum_probs=74.4
Q ss_pred cCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.+..+|+|+|+|.|.++..+++ ++..+++..|. |.+++.+++ .+ ++.++.+|+++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~---rv~~~~gd~f~------------- 154 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------AD---RVEFVPGDFFD------------- 154 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TT---TEEEEES-TTT-------------
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------cc---ccccccccHHh-------------
Confidence 4567899999999999999885 58889999999 778888887 22 48899999873
Q ss_pred cccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCC--eEEEEeccC
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPG--AVVGISGIL 197 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~g--G~liis~~~ 197 (237)
.+ .. +|+++..-.+|.. ..+++++...|+|| |+|+|.+..
T Consensus 155 -------~~--P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 155 -------PL--PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp -------CC--SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred -------hh--cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 11 23 9999998877554 47899999999999 999998664
No 203
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.74 E-value=1.2e-07 Score=76.50 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=83.5
Q ss_pred HHHHHHHhhccCCCe-EEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513 59 LCLLLLRRLIKGGEL-FLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS 136 (237)
Q Consensus 59 ~~~~~l~~~~~~~~~-vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~ 136 (237)
-++++|++.+++... |||||||||.-+.+++. .+.-+-.-.|.++..+...+..+...+++|.. ..+..|+.+..
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~---~P~~lDv~~~~ 89 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR---PPLALDVSAPP 89 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC---CCeEeecCCCC
Confidence 456666666665555 99999999999999886 47777789999999988888888777776522 22233433210
Q ss_pred ccccccccccccccccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEe
Q 026513 137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis 194 (237)
-+- .........+||.|+|.-++|.+ ..++..+.++|++||.|++-
T Consensus 90 w~~------------~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 90 WPW------------ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred Ccc------------ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 000 00001124689999996655543 56899999999999999984
No 204
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.73 E-value=8.6e-07 Score=74.75 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=90.0
Q ss_pred CCeEEEEcCcchHHHHHHH-HhCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAI-KFGA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la-~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.-+|+||.||.|.+..-+. ..+. .+|...|+|+..++..++.++.+|+.+ .+.|.++|.++..
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~---i~~f~~~dAfd~~----------- 201 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLED---IARFEQGDAFDRD----------- 201 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---ceEEEecCCCCHh-----------
Confidence 4589999999998877554 4443 689999999999999999999999997 3599999998532
Q ss_pred cccccccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEEecc-CCCCHHHHHHHHhh
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGI-LSEQLPHIINRYSE 210 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~liis~~-~~~~~~~~~~~~~~ 210 (237)
....+ ...++++++...++.+ ...+.-+...+.|||+|+..+- +-++.+-+...+..
T Consensus 202 ----~l~~l--~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lts 265 (311)
T PF12147_consen 202 ----SLAAL--DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTS 265 (311)
T ss_pred ----Hhhcc--CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhc
Confidence 11112 4578999988876544 3457888999999999999864 45555555555443
No 205
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.73 E-value=1.6e-07 Score=87.04 Aligned_cols=83 Identities=20% Similarity=0.127 Sum_probs=56.1
Q ss_pred CCCeEEEEcCcchHHHHHHHHhC---------CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFG---------AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNER 140 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~---------~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 140 (237)
...+|||.|||+|.+...++... ...++|+|+++.+++.++.++...+.. .+.+...|......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~----~~~i~~~d~l~~~~--- 103 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL----EINVINFNSLSYVL--- 103 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC----Cceeeecccccccc---
Confidence 34589999999999998877431 146899999999999999998766511 24444555431100
Q ss_pred ccccccccccccccCCCCCCceeEEEEeCCh
Q 026513 141 VDGVVEDLSSHKIRGISQTEKYDVVIANILL 171 (237)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~ 171 (237)
.. .....++||+|++|||+
T Consensus 104 -----------~~-~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 104 -----------LN-IESYLDLFDIVITNPPY 122 (524)
T ss_pred -----------cc-cccccCcccEEEeCCCc
Confidence 00 00113589999999995
No 206
>PRK04148 hypothetical protein; Provisional
Probab=98.72 E-value=1.3e-07 Score=71.52 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=71.5
Q ss_pred CCCeEEEEcCcchH-HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGI-LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 70 ~~~~vLDlG~G~G~-~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
++.+++|+|||.|. ++..+++.| ..|+++|+++.+++.++++ + +.++.+|++++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~----~-------~~~v~dDlf~p~~~---------- 73 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL----G-------LNAFVDDLFNPNLE---------- 73 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh----C-------CeEEECcCCCCCHH----------
Confidence 45789999999996 888888876 4699999999998888765 2 55778998854321
Q ss_pred ccccccCCCCCCceeEEEE-eCChHHHHHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513 149 SSHKIRGISQTEKYDVVIA-NILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 200 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~-n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~ 200 (237)
.-+.+|+|++ .||.+....+++-.. +-|.-+++..+..+.
T Consensus 74 ---------~y~~a~liysirpp~el~~~~~~la~---~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 74 ---------IYKNAKLIYSIRPPRDLQPFILELAK---KINVPLIIKPLSGEE 114 (134)
T ss_pred ---------HHhcCCEEEEeCCCHHHHHHHHHHHH---HcCCCEEEEcCCCCC
Confidence 1357999997 777777766655444 457777776665554
No 207
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.71 E-value=2.4e-07 Score=80.07 Aligned_cols=176 Identities=17% Similarity=0.260 Sum_probs=114.3
Q ss_pred ceeEEeCcccccCCCCch--hHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHH-
Q 026513 38 ATNIILNPGLAFGSGEHA--TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFG-AAMSVGADIDPQAIKSAHQNA- 113 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~--~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~- 113 (237)
...+.++.+..|.+-... .+.+....+ +..+.-.+||-+|.|.|.-...+.+++ ..+|+-+|.+|+|++.++.+.
T Consensus 256 d~rLYldG~LQfsTrDe~RYhEsLV~pal-s~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~v 334 (508)
T COG4262 256 DLRLYLDGGLQFSTRDEYRYHESLVYPAL-SSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATV 334 (508)
T ss_pred ceEEEEcCceeeeechhhhhhheeeeccc-ccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhH
Confidence 346677777777642211 111111111 112345689999999999999999986 899999999999999999553
Q ss_pred --HHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh--------HHHHHHHHHHhH
Q 026513 114 --ALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--------NPLLQLADHIVS 183 (237)
Q Consensus 114 --~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--------~~~~~~l~~~~~ 183 (237)
..|+-+...-+++++..|.++.. . .....||+||.+.+- -...++...+.+
T Consensus 335 lr~~N~~sf~dpRv~Vv~dDAf~wl---------r----------~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~ 395 (508)
T COG4262 335 LRALNQGSFSDPRVTVVNDDAFQWL---------R----------TAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSR 395 (508)
T ss_pred hhhhccCCccCCeeEEEeccHHHHH---------H----------hhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHH
Confidence 23333444457888888887321 1 114589999996641 112367788999
Q ss_pred hcCCCeEEEEe---ccCCCC----HHHHHHHHhh--ccccceeeecCCEEEEEEEEccc
Q 026513 184 YAKPGAVVGIS---GILSEQ----LPHIINRYSE--FLEDILVSEMDDWTCVSGKKKRV 233 (237)
Q Consensus 184 ~L~~gG~liis---~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~w~~~~~~~~~~ 233 (237)
.|+++|.+++. .+...+ ....++.... ..-.+.+++.|+|..+.+.+.+.
T Consensus 396 ~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~~~ 454 (508)
T COG4262 396 HLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPGDA 454 (508)
T ss_pred hcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccccC
Confidence 99999999994 333332 1222222221 13466778999999999887653
No 208
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.71 E-value=2e-07 Score=79.70 Aligned_cols=119 Identities=17% Similarity=0.208 Sum_probs=88.9
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
..+|.+|||++++.|+-+..++.. +...+++.|+++.-+...+++++..|+.+ +.+...|.....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~----v~~~~~D~~~~~--------- 149 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN----VIVINADARKLD--------- 149 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS----EEEEESHHHHHH---------
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce----EEEEeecccccc---------
Confidence 568899999999999999888865 35789999999999999999999999886 666667765321
Q ss_pred cccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhc----CCCeEEEEecc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYA----KPGAVVGISGI 196 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L----~~gG~liis~~ 196 (237)
.......||.|++++|- ....+++..+.+++ +|||+++.|..
T Consensus 150 ---------~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 150 ---------PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ---------HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred ---------ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 11113469999999981 22346899999999 99999999833
Q ss_pred --CCCCHHHHHHHH
Q 026513 197 --LSEQLPHIINRY 208 (237)
Q Consensus 197 --~~~~~~~~~~~~ 208 (237)
..++-+++...+
T Consensus 221 S~~~eENE~vV~~f 234 (283)
T PF01189_consen 221 SLSPEENEEVVEKF 234 (283)
T ss_dssp HHHGGGTHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 333334444444
No 209
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.69 E-value=1.3e-07 Score=75.66 Aligned_cols=96 Identities=20% Similarity=0.213 Sum_probs=77.9
Q ss_pred eEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513 73 LFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH 151 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 151 (237)
+++|+|+|.|.-++.++ ..+..+++.+|....-+...+.....-+++| +.++++.+.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n----v~v~~~R~E~----------------- 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN----VEVINGRAEE----------------- 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS----EEEEES-HHH-----------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC----EEEEEeeecc-----------------
Confidence 89999999999999887 4578889999999999999999999999987 8888887652
Q ss_pred cccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 152 KIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 152 ~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
.....+||+|++-.+. .+..++..+..++++||.+++-
T Consensus 110 ----~~~~~~fd~v~aRAv~-~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 110 ----PEYRESFDVVTARAVA-PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp ----TTTTT-EEEEEEESSS-SHHHHHHHHGGGEEEEEEEEEE
T ss_pred ----cccCCCccEEEeehhc-CHHHHHHHHHHhcCCCCEEEEE
Confidence 1226799999998854 4567888899999999998874
No 210
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.67 E-value=1.5e-07 Score=78.25 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=66.8
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-ccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~~ 149 (237)
..++||||+|.|..+..++.. ..+|+++|+|+.|... ++..|.. ++.. |+.
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~r----L~~kg~~-------vl~~~~w~---------------- 146 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWR----LSKKGFT-------VLDIDDWQ---------------- 146 (265)
T ss_pred CCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHH----HHhCCCe-------EEehhhhh----------------
Confidence 468999999999999999887 7779999999999544 4444533 2222 221
Q ss_pred cccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis 194 (237)
. .+.+||+|.|--+++.- ..+++.+++.|+|+|+++++
T Consensus 147 -----~--~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 147 -----Q--TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -----c--cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 1 14589999997665432 46899999999999999985
No 211
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.65 E-value=3.4e-07 Score=70.99 Aligned_cols=104 Identities=15% Similarity=0.262 Sum_probs=78.3
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
..|..|||+|.|+|.++.++..+|. ..++++|+|++......+.... +.++++|.++.. +.+
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~---------~~ii~gda~~l~------~~l- 110 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG---------VNIINGDAFDLR------TTL- 110 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC---------ccccccchhhHH------HHH-
Confidence 5678999999999999999887754 5799999999998887765431 557888876311 111
Q ss_pred ccccccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
...++..||.|+|..|+ +..-++++.+...|++||.++--.+
T Consensus 111 --------~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 111 --------GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred --------hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 12346789999996653 4445789999999999999987544
No 212
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.61 E-value=3.7e-07 Score=71.52 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=60.6
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH---
Q 026513 97 VGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP--- 173 (237)
Q Consensus 97 ~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~--- 173 (237)
+|+|+|+.|++.|+++....... ..-++.++++|..+. ..++++||+|++...++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~l--------------------p~~~~~fD~v~~~~~l~~~~d 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDL--------------------PFDDCEFDAVTMGYGLRNVVD 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhC--------------------CCCCCCeeEEEecchhhcCCC
Confidence 48999999999998776532210 001378889987631 223678999999887765
Q ss_pred HHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513 174 LLQLADHIVSYAKPGAVVGISGILSE 199 (237)
Q Consensus 174 ~~~~l~~~~~~L~~gG~liis~~~~~ 199 (237)
....++++.++|||||.+++.++...
T Consensus 60 ~~~~l~ei~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 60 RLRAMKEMYRVLKPGSRVSILDFNKS 85 (160)
T ss_pred HHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 35679999999999999999876543
No 213
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.61 E-value=1.9e-07 Score=79.67 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=47.8
Q ss_pred CCeEEEEcCcch-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEeccCcccccccccccccccccc
Q 026513 71 GELFLDYGTGSG-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 71 ~~~vLDlG~G~G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.-++||||||.. ++.+..++...-+++|+|+++..++.|++++..| ++.. ++.++...-...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~---~I~l~~~~~~~~------------- 166 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLES---RIELRKQKNPDN------------- 166 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TT---TEEEEE--ST-S-------------
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccccc---ceEEEEcCCccc-------------
Confidence 458999999975 6677666544678999999999999999999999 7775 354443321110
Q ss_pred cccccc-CCCCCCceeEEEEeCChHH
Q 026513 149 SSHKIR-GISQTEKYDVVIANILLNP 173 (237)
Q Consensus 149 ~~~~~~-~~~~~~~fD~I~~n~~~~~ 173 (237)
.+. .....+.||+++||||++.
T Consensus 167 ---i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 167 ---IFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp ---STTTSTT--S-EEEEEE-----S
T ss_pred ---cchhhhcccceeeEEecCCcccc
Confidence 001 1122468999999999743
No 214
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.60 E-value=8.7e-08 Score=76.08 Aligned_cols=95 Identities=29% Similarity=0.392 Sum_probs=74.3
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
.|++|||+|+|+|..++..++.|+..|++.|++|..+...+-|+..|+++ +.++..|..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~-----i~~~~~d~~---------------- 137 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS-----ILFTHADLI---------------- 137 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce-----eEEeecccc----------------
Confidence 58999999999999999999999999999999999999999999999865 777777753
Q ss_pred cccccCCCCCCceeEEEEeCCh-H-HH-HHHHHHHhHhcCCCeEEEE
Q 026513 150 SHKIRGISQTEKYDVVIANILL-N-PL-LQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~-~-~~-~~~l~~~~~~L~~gG~lii 193 (237)
..+..||+++..-.+ . .. .++++ +...++..|..++
T Consensus 138 -------g~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 138 -------GSPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred -------CCCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 136789999985543 2 22 34455 5566665565554
No 215
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.1e-07 Score=76.24 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=73.6
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec-cCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV-PDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~~~ 146 (237)
..+|.++||+|+.||.|+..+.+.|+.+|+|+|.....+..-- +.+. ++... ..|+....
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R~d~------rV~~~E~tN~r~l~---------- 137 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---RNDP------RVIVLERTNVRYLT---------- 137 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---hcCC------cEEEEecCChhhCC----------
Confidence 4679999999999999999999999999999999987665422 1111 12222 22332100
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii 193 (237)
.....+..|+++|+.++-++..++..+..++++++.++.
T Consensus 138 --------~~~~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 138 --------PEDFTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred --------HHHcccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 001134789999999999999999999999999998876
No 216
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.58 E-value=1.8e-07 Score=82.92 Aligned_cols=145 Identities=21% Similarity=0.324 Sum_probs=94.0
Q ss_pred eEEeCcccccCCCCchhHHHHHH---HHHhhccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHH
Q 026513 40 NIILNPGLAFGSGEHATTKLCLL---LLRRLIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAA 114 (237)
Q Consensus 40 ~~~~~~~~~f~~g~~~~~~~~~~---~l~~~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~ 114 (237)
.+-.+|.|.|+ +..+-+++. ........+.++||.-+|+|.-++..+.. +..+|++-|+|+.+++..++|+.
T Consensus 19 ~vFYNP~~~~n---RDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~ 95 (377)
T PF02005_consen 19 PVFYNPVMEFN---RDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLE 95 (377)
T ss_dssp SSS--GGGHHH---HHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHH
T ss_pred CcccCcchhcc---cceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHh
Confidence 34557777776 556666633 22222234568999999999999988865 56889999999999999999999
Q ss_pred HcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 115 LNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 115 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
.|++... ++.+.+.|.... |. .....||+|=.+| +.....+++.+.+.++.||.|+++
T Consensus 96 ~N~~~~~--~~~v~~~DAn~l-----------------l~--~~~~~fD~IDlDP-fGSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 96 LNGLEDE--RIEVSNMDANVL-----------------LY--SRQERFDVIDLDP-FGSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp HCT-SGC--CEEEEES-HHHH-----------------HC--HSTT-EEEEEE---SS--HHHHHHHHHHEEEEEEEEEE
T ss_pred hccccCc--eEEEehhhHHHH-----------------hh--hccccCCEEEeCC-CCCccHhHHHHHHHhhcCCEEEEe
Confidence 9999863 356667776521 11 2367899999998 555567889999999999999995
Q ss_pred cc-----CCCCHHHHHHHHh
Q 026513 195 GI-----LSEQLPHIINRYS 209 (237)
Q Consensus 195 ~~-----~~~~~~~~~~~~~ 209 (237)
+- -..........|.
T Consensus 154 aTD~a~L~G~~~~~~~r~Yg 173 (377)
T PF02005_consen 154 ATDTAVLCGSYPEKCFRKYG 173 (377)
T ss_dssp E--HHHHTTSSHHHHHHHHS
T ss_pred ccccccccCCChhHHHHhcC
Confidence 21 2334444555444
No 217
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.58 E-value=1.2e-07 Score=76.99 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=69.3
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
..++||.|+|-|..+..+...-+.+|..+|.++..++.|++.+...... ...+.+..+.
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~----v~~~~~~gLQ----------------- 114 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPR----VGEFYCVGLQ----------------- 114 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCC----EEEEEES-GG-----------------
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCC----cceEEecCHh-----------------
Confidence 4689999999999998776544889999999999999999876542111 1334344332
Q ss_pred ccccCCCC-CCceeEEEEeCChHHHH-----HHHHHHhHhcCCCeEEEEecc
Q 026513 151 HKIRGISQ-TEKYDVVIANILLNPLL-----QLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 151 ~~~~~~~~-~~~fD~I~~n~~~~~~~-----~~l~~~~~~L~~gG~liis~~ 196 (237)
.+.| ..+||+|.+...+.++. +++.++...|+|+|.+++-..
T Consensus 115 ----~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 115 ----DFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp ----G----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----hccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence 2233 36999999999876553 679999999999999999533
No 218
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.58 E-value=2.3e-07 Score=77.19 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=65.6
Q ss_pred hccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 67 LIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 67 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.++++..|||+|.|+|.++..+.+. +++|+++|+++.++...++....-+.++ +.+++.+|....
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~---kLqV~~gD~lK~----------- 119 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSG---KLQVLHGDFLKT----------- 119 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccc---eeeEEecccccC-----------
Confidence 3678899999999999999999988 5669999999999999988877555544 688899998631
Q ss_pred ccccccccCCCCCCceeEEEEeCCh
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILL 171 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~ 171 (237)
+...||.+|+|.|+
T Consensus 120 -----------d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 -----------DLPRFDGCVSNLPY 133 (315)
T ss_pred -----------CCcccceeeccCCc
Confidence 13579999999885
No 219
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=9.3e-07 Score=76.71 Aligned_cols=128 Identities=20% Similarity=0.312 Sum_probs=96.6
Q ss_pred ceeEEeCcccccCCCCchhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 38 ATNIILNPGLAFGSGEHATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 38 ~~~~~~~~~~~f~~g~~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
.-.+-.+|.|.|. +..+-.++..+.+.. ..+|+|.-+|+|.-++..+.. +..+++.-|+||.+++.+++|++.|
T Consensus 25 ~~pVFYNP~m~~N---RDlsV~~l~~~~~~~--~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 25 RAPVFYNPAMEFN---RDLSVLVLKAFGKLL--PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CCcceeCchhhhc---cchhHHHHHHhhccC--CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc
Confidence 3456788999988 555666666654322 678999999999999998865 5558999999999999999999999
Q ss_pred CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 117 NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 117 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
...+ ...+..|... .|... ...||+|=.+| +.....+++.+.+.++.||.|.++
T Consensus 100 ~~~~----~~v~n~DAN~-----------------lm~~~--~~~fd~IDiDP-FGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 100 SGED----AEVINKDANA-----------------LLHEL--HRAFDVIDIDP-FGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred Cccc----ceeecchHHH-----------------HHHhc--CCCccEEecCC-CCCCchHHHHHHHHhhcCCEEEEE
Confidence 4443 5555666542 11121 37899999998 444456778888899999999985
No 220
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.48 E-value=4.2e-07 Score=77.90 Aligned_cols=107 Identities=20% Similarity=0.270 Sum_probs=82.2
Q ss_pred hhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHH-------HHHHHHHHcCCCCCcceEEeccCcccccccc
Q 026513 66 RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIK-------SAHQNAALNNIGPKKMKLHLVPDRTFTASMN 138 (237)
Q Consensus 66 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~-------~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 138 (237)
...++|+-|+|...|||.+.+..++.|+- |+|.||+-.++. ..+.|+++.|.+... +.++.+|..++
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa~-viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f--ldvl~~D~sn~--- 277 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGAY-VIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF--LDVLTADFSNP--- 277 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcce-eeccccchheeecccCCCcchhHhHHHhCCcchh--hheeeecccCc---
Confidence 34689999999999999999999999655 999999999987 356788888866432 34556776532
Q ss_pred ccccccccccccccccCCCCCCceeEEEEeCCh------------------------------------HHHHHHHHHHh
Q 026513 139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------------------------------NPLLQLADHIV 182 (237)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------------------------------~~~~~~l~~~~ 182 (237)
.+..+..||.|+|+||+ ..+.+++.-..
T Consensus 278 ----------------~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss 341 (421)
T KOG2671|consen 278 ----------------PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSS 341 (421)
T ss_pred ----------------chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhH
Confidence 33346799999999993 11235677888
Q ss_pred HhcCCCeEEEEe
Q 026513 183 SYAKPGAVVGIS 194 (237)
Q Consensus 183 ~~L~~gG~liis 194 (237)
+.|..||++++-
T Consensus 342 ~~L~~ggrlv~w 353 (421)
T KOG2671|consen 342 RRLVDGGRLVFW 353 (421)
T ss_pred hhhhcCceEEEe
Confidence 999999999873
No 221
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.47 E-value=1.9e-07 Score=73.75 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=76.7
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
...+.|+|+|+|.++..+++. +.+|++++.+|...+.|++|+..+|..+ ++++.+|..+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n----~evv~gDA~~---------------- 91 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVN----WEVVVGDARD---------------- 91 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcc----eEEEeccccc----------------
Confidence 368999999999999999888 8889999999999999999998888776 8999999863
Q ss_pred ccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEE
Q 026513 151 HKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~lii 193 (237)
... ...|+|+|-+.- +.+-.+++.+...|+-++.++-
T Consensus 92 -----y~f-e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 92 -----YDF-ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred -----ccc-cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 211 468999986631 2223457777888888888764
No 222
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.45 E-value=9.2e-07 Score=72.05 Aligned_cols=114 Identities=14% Similarity=0.008 Sum_probs=84.3
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
+....++|||||.|.+...+...+..+++-+|.|..|++.++.. .+..+.+....+|-..
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~------qdp~i~~~~~v~DEE~-------------- 130 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA------QDPSIETSYFVGDEEF-------------- 130 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc------CCCceEEEEEecchhc--------------
Confidence 34568999999999999999988899999999999999988743 2222335555555221
Q ss_pred ccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
..+.+.++|+|++...+|+.. ..+-+++..|||+|.++-+-+-.+...++...+
T Consensus 131 ------Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~sl 187 (325)
T KOG2940|consen 131 ------LDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSL 187 (325)
T ss_pred ------ccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHh
Confidence 113367999999999888775 346778999999999998766666555554443
No 223
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.45 E-value=1.5e-06 Score=73.60 Aligned_cols=117 Identities=16% Similarity=0.268 Sum_probs=82.1
Q ss_pred cccCCCCchhHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceE
Q 026513 47 LAFGSGEHATTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125 (237)
Q Consensus 47 ~~f~~g~~~~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v 125 (237)
-.+|...-.....+...+... +.++..|||+|+|.|.++..+++.+ .+++++|+++..++..++....+ . ++
T Consensus 6 k~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~--~----~~ 78 (262)
T PF00398_consen 6 KSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN--P----NV 78 (262)
T ss_dssp CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC--S----SE
T ss_pred CCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc--c----cc
Confidence 344544444445555555443 3478899999999999999999886 88999999999999888765522 2 48
Q ss_pred EeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCC
Q 026513 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKP 187 (237)
Q Consensus 126 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~ 187 (237)
+++.+|+.+....+ . .......|++|.|+.....++.++...-+.
T Consensus 79 ~vi~~D~l~~~~~~----------------~-~~~~~~~vv~NlPy~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 79 EVINGDFLKWDLYD----------------L-LKNQPLLVVGNLPYNISSPILRKLLELYRF 123 (262)
T ss_dssp EEEES-TTTSCGGG----------------H-CSSSEEEEEEEETGTGHHHHHHHHHHHGGG
T ss_pred eeeecchhccccHH----------------h-hcCCceEEEEEecccchHHHHHHHhhcccc
Confidence 89999987422110 0 024678999999987777777777764343
No 224
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.43 E-value=1.1e-06 Score=71.80 Aligned_cols=97 Identities=22% Similarity=0.227 Sum_probs=78.5
Q ss_pred CCeEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
+.+++|||+|.|.-++.+| ..+..+++.+|....-+.-.+......++.| ++++++.+.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n----v~i~~~RaE~--------------- 128 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN----VEIVHGRAEE--------------- 128 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC----eEEehhhHhh---------------
Confidence 5899999999999999888 4566779999999999999999989889987 8888887652
Q ss_pred cccccCCCCCCc-eeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513 150 SHKIRGISQTEK-YDVVIANILLNPLLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 150 ~~~~~~~~~~~~-fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii 193 (237)
+....+ ||+|.+-.. ..+..++..+..++++||.++.
T Consensus 129 ------~~~~~~~~D~vtsRAv-a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 129 ------FGQEKKQYDVVTSRAV-ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ------cccccccCcEEEeehc-cchHHHHHHHHHhcccCCcchh
Confidence 222234 999999773 3456677889999999998754
No 225
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.43 E-value=3.4e-06 Score=68.13 Aligned_cols=134 Identities=16% Similarity=0.156 Sum_probs=79.8
Q ss_pred HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513 58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM 137 (237)
Q Consensus 58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 137 (237)
..+++++... +++..|.|+|||.+.++..+. . ..+|...|.-... -.++.+|+...
T Consensus 61 d~iI~~l~~~-~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva~n-------------------~~Vtacdia~v-- 116 (219)
T PF05148_consen 61 DVIIEWLKKR-PKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVAPN-------------------PRVTACDIANV-- 116 (219)
T ss_dssp HHHHHHHCTS--TTS-EEEES-TT-HHHHH---S----EEEEESS-SS-------------------TTEEES-TTS---
T ss_pred HHHHHHHHhc-CCCEEEEECCCchHHHHHhcc-c-CceEEEeeccCCC-------------------CCEEEecCccC--
Confidence 3445555432 456799999999999986543 1 2358888886621 12446776432
Q ss_pred cccccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEecc--CCCCHHHHHHHHhhc-c
Q 026513 138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGI--LSEQLPHIINRYSEF-L 212 (237)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~--~~~~~~~~~~~~~~~-~ 212 (237)
+.+++..|++|+-..+ ..+..++.++.+.|||||.|.|..+ ..+....+...+... |
T Consensus 117 ------------------PL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF 178 (219)
T PF05148_consen 117 ------------------PLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGF 178 (219)
T ss_dssp ------------------S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTE
T ss_pred ------------------cCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCC
Confidence 2246899999986654 4567899999999999999999766 345677777777765 7
Q ss_pred ccceeee-cCCEEEEEEEEccc
Q 026513 213 EDILVSE-MDDWTCVSGKKKRV 233 (237)
Q Consensus 213 ~~~~~~~-~~~w~~~~~~~~~~ 233 (237)
....... ..-+..+.++|.+.
T Consensus 179 ~~~~~d~~n~~F~~f~F~K~~~ 200 (219)
T PF05148_consen 179 KLKSKDESNKHFVLFEFKKIRK 200 (219)
T ss_dssp EEEEEE--STTEEEEEEEE-SS
T ss_pred eEEecccCCCeEEEEEEEEcCc
Confidence 6665443 34477788887654
No 226
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.42 E-value=1.8e-05 Score=64.41 Aligned_cols=135 Identities=15% Similarity=0.174 Sum_probs=90.0
Q ss_pred EEEEcCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513 74 FLDYGTGSGILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK 152 (237)
Q Consensus 74 vLDlG~G~G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (237)
|.|+||--|+++++|.+.+. .+++++|+++..++.|++++...++.+ ++++..+|.++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~---~i~~rlgdGL~------------------ 59 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLED---RIEVRLGDGLE------------------ 59 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TT---TEEEEE-SGGG------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcc---cEEEEECCccc------------------
Confidence 68999999999999998764 569999999999999999999999887 58888999764
Q ss_pred ccCCCCCCceeEEEE-eCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-ccccee--eec-CC-EEEE
Q 026513 153 IRGISQTEKYDVVIA-NILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDILV--SEM-DD-WTCV 226 (237)
Q Consensus 153 ~~~~~~~~~fD~I~~-n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~-w~~~ 226 (237)
.+.+.+..|.|+. .+.-..+.+++......++....+++... .....+...+..+ |..+.. ... +. +..+
T Consensus 60 --~l~~~e~~d~ivIAGMGG~lI~~ILe~~~~~~~~~~~lILqP~--~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi 135 (205)
T PF04816_consen 60 --VLKPGEDVDTIVIAGMGGELIIEILEAGPEKLSSAKRLILQPN--THAYELRRWLYENGFEIIDEDLVEENGRFYEII 135 (205)
T ss_dssp --G--GGG---EEEEEEE-HHHHHHHHHHTGGGGTT--EEEEEES--S-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEE
T ss_pred --ccCCCCCCCEEEEecCCHHHHHHHHHhhHHHhccCCeEEEeCC--CChHHHHHHHHHCCCEEEEeEEEeECCEEEEEE
Confidence 2333334677765 55566778899988888888778888653 4556666666655 654432 233 33 3335
Q ss_pred EEEEccc
Q 026513 227 SGKKKRV 233 (237)
Q Consensus 227 ~~~~~~~ 233 (237)
.+.+...
T Consensus 136 ~~~~~~~ 142 (205)
T PF04816_consen 136 VAERGEE 142 (205)
T ss_dssp EEEESSS
T ss_pred EEEeCCC
Confidence 5555443
No 227
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.41 E-value=1.2e-05 Score=69.67 Aligned_cols=127 Identities=9% Similarity=0.061 Sum_probs=83.0
Q ss_pred hccCCCeEEEEcCcchHHHHHHHH----h-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccc
Q 026513 67 LIKGGELFLDYGTGSGILGIAAIK----F-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERV 141 (237)
Q Consensus 67 ~~~~~~~vLDlG~G~G~~~~~la~----~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 141 (237)
.+.++..++|+|||+|.-+..+.. . ....++++|+|..+++.+.+++.....+ .+.+.-+.+|..++.-
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p--~l~v~~l~gdy~~~l~---- 146 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS--HVRCAGLLGTYDDGLA---- 146 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC--CeEEEEEEecHHHHHh----
Confidence 456788999999999987665542 1 2356999999999999999888733332 2346668888764210
Q ss_pred cccccccccccccCCCCCCceeEEEE------eCChHHHHHHHHHHhH-hcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513 142 DGVVEDLSSHKIRGISQTEKYDVVIA------NILLNPLLQLADHIVS-YAKPGAVVGISGILSEQLPHIINRYS 209 (237)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~fD~I~~------n~~~~~~~~~l~~~~~-~L~~gG~liis~~~~~~~~~~~~~~~ 209 (237)
. +..........+++. |........++..+.+ .|+|||.++++--.......+...|.
T Consensus 147 -----~-----l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~ 211 (319)
T TIGR03439 147 -----W-----LKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYN 211 (319)
T ss_pred -----h-----cccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhc
Confidence 0 000001223566654 3334555678999999 99999999997545555555555553
No 228
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.37 E-value=8.6e-06 Score=71.72 Aligned_cols=119 Identities=14% Similarity=0.058 Sum_probs=89.1
Q ss_pred ccCCCeEEEEcCcchHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIK--FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~--~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+++|.||||.++-+|.-+..+|. .....|++.|.+..-++..+.|+...|+.+ ..+...|..+++.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n----tiv~n~D~~ef~~-------- 306 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN----TIVSNYDGREFPE-------- 306 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc----eEEEccCcccccc--------
Confidence 57899999999999988776664 456789999999999999999999999887 6666777653221
Q ss_pred cccccccccCCCCCCceeEEEEeCCh-------------------------HHHHHHHHHHhHhcCCCeEEEEecc--CC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILL-------------------------NPLLQLADHIVSYAKPGAVVGISGI--LS 198 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~-------------------------~~~~~~l~~~~~~L~~gG~liis~~--~~ 198 (237)
... .++||.|+.+.|. +..++++..+..++++||+|+.|+. ..
T Consensus 307 ---------~~~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 307 ---------KEF-PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ---------ccc-CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 112 2389999998871 3346789999999999999999833 33
Q ss_pred CCHHHHHHHH
Q 026513 199 EQLPHIINRY 208 (237)
Q Consensus 199 ~~~~~~~~~~ 208 (237)
++-+.+....
T Consensus 377 ~ENE~vV~ya 386 (460)
T KOG1122|consen 377 EENEAVVDYA 386 (460)
T ss_pred hhhHHHHHHH
Confidence 3334444433
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.36 E-value=1.1e-05 Score=65.71 Aligned_cols=111 Identities=23% Similarity=0.267 Sum_probs=63.5
Q ss_pred ccCCCeEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHH-------HcCCCCCcceEEeccCccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAA-------LNNIGPKKMKLHLVPDRTFTASMNE 139 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~-------~~~~~~~~~~v~~~~~d~~~~~~~~ 139 (237)
+.++..++|||||.|.....++ ..+..+++|||+.+...+.|+.... ..+... .++.+..+|+.+....+
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~--~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRP--GKVELIHGDFLDPDFVK 117 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-----EEEEECS-TTTHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccc--ccceeeccCccccHhHh
Confidence 5678899999999999988776 4578889999999999888776432 223322 25777889876422110
Q ss_pred cccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.. -...|+|++|... ..+...+......||+|.+++...-+
T Consensus 118 ---------------~~--~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 118 ---------------DI--WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp ---------------HH--GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred ---------------hh--hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 00 1357999997653 23333456666788999888764333
No 230
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=6.2e-06 Score=65.22 Aligned_cols=123 Identities=12% Similarity=0.115 Sum_probs=85.9
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV 144 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~ 144 (237)
+.|+.+|||+||-+|..+..+.+. +...|.|+|+-.-. ++.. +.++++ |+.++..--
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~G----a~~i~~~dvtdp~~~~----- 126 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPEG----ATIIQGNDVTDPETYR----- 126 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCCC----cccccccccCCHHHHH-----
Confidence 578999999999999999888764 66789999986521 2221 444555 555432110
Q ss_pred ccccccccccCCCCCCceeEEEEeCC--------hHHHH------HHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANIL--------LNPLL------QLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 210 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~--------~~~~~------~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~ 210 (237)
.+.+..++.+.|+|++++. +++.. ..+--...++.|+|.++.--+...+...+...+..
T Consensus 127 -------ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~ 199 (232)
T KOG4589|consen 127 -------KIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQA 199 (232)
T ss_pred -------HHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHH
Confidence 1112235789999999875 23332 23444567889999999998888899999999998
Q ss_pred cccccee
Q 026513 211 FLEDILV 217 (237)
Q Consensus 211 ~~~~~~~ 217 (237)
+|+.+..
T Consensus 200 ~f~~Vk~ 206 (232)
T KOG4589|consen 200 VFTNVKK 206 (232)
T ss_pred HhhhcEe
Confidence 8877765
No 231
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.5e-05 Score=66.52 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=79.5
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.||.+|+|-|+|+|.++.++++. +..+++..|+...-.+.|++-.+..++.. .+.+..-|++.....
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~---~vt~~hrDVc~~GF~------- 172 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGD---NVTVTHRDVCGSGFL------- 172 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCc---ceEEEEeecccCCcc-------
Confidence 579999999999999999999875 66889999999999999999999999876 477777777642211
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii 193 (237)
....++|.|+.+.|..+. .+..+...|+.+|.-+.
T Consensus 173 -----------~ks~~aDaVFLDlPaPw~--AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 173 -----------IKSLKADAVFLDLPAPWE--AIPHAAKILKDEGGRLC 207 (314)
T ss_pred -----------ccccccceEEEcCCChhh--hhhhhHHHhhhcCceEE
Confidence 114689999999986653 33445557787775433
No 232
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.30 E-value=6.6e-07 Score=75.02 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=69.6
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcce-------------------------
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMK------------------------- 124 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~------------------------- 124 (237)
+|.++||+|||+-.+....+..-+.+|+..|+++..++..++-++..+ ..++..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~-a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEG-AFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-T-S--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCC-CCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 467899999999877665555557889999999999998887665542 111111
Q ss_pred E-EeccCccccccccccccccccccccccccC-CCCCCceeEEEEeCCh-------HHHHHHHHHHhHhcCCCeEEEEec
Q 026513 125 L-HLVPDRTFTASMNERVDGVVEDLSSHKIRG-ISQTEKYDVVIANILL-------NPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 125 v-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~n~~~-------~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
+ .++..|+.. .+.+.. ....++||+|++..-+ ..+...++++.++|||||+|++.+
T Consensus 135 Vk~Vv~cDV~~---------------~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 135 VKQVVPCDVTQ---------------PNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp EEEEEE--TTS---------------SSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hceEEEeeccC---------------CCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 1 122333322 111211 1112369999987764 445678999999999999999965
Q ss_pred cC
Q 026513 196 IL 197 (237)
Q Consensus 196 ~~ 197 (237)
.+
T Consensus 200 ~l 201 (256)
T PF01234_consen 200 VL 201 (256)
T ss_dssp ES
T ss_pred Ec
Confidence 54
No 233
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.25 E-value=5.7e-05 Score=61.39 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=103.0
Q ss_pred HHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccc
Q 026513 62 LLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNER 140 (237)
Q Consensus 62 ~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 140 (237)
..+.++.+.+.++.|+||--++++.++.+. ....+++.|+++..++.|.+++..+++.. ++.+..+|.+.
T Consensus 8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~---~i~vr~~dgl~------ 78 (226)
T COG2384 8 TTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSE---RIDVRLGDGLA------ 78 (226)
T ss_pred HHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcc---eEEEeccCCcc------
Confidence 344455677888999999999999999865 56789999999999999999999999886 57777888753
Q ss_pred ccccccccccccccCCCCCCceeEEEEeCC-hHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc-cccc--e
Q 026513 141 VDGVVEDLSSHKIRGISQTEKYDVVIANIL-LNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF-LEDI--L 216 (237)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~-~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~-~~~~--~ 216 (237)
.+..+..+|+|+...+ -..+.+++..-...|+.=-++++.. .....++...+..+ |..+ .
T Consensus 79 --------------~l~~~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQP--n~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 79 --------------VLELEDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQP--NIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred --------------ccCccCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEECC--CCCHHHHHHHHHhCCceeeeee
Confidence 3344567898876554 5666888888888887666777753 23335555555544 4433 3
Q ss_pred eeecCCEEE--EEEEE
Q 026513 217 VSEMDDWTC--VSGKK 230 (237)
Q Consensus 217 ~~~~~~w~~--~~~~~ 230 (237)
.....+|.. ++..+
T Consensus 143 ileE~~kiYEIlv~e~ 158 (226)
T COG2384 143 ILEEDGKIYEILVVEK 158 (226)
T ss_pred eecccCeEEEEEEEec
Confidence 334445443 44444
No 234
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.24 E-value=3.3e-05 Score=66.42 Aligned_cols=61 Identities=28% Similarity=0.341 Sum_probs=50.4
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 133 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~ 133 (237)
+.+|..++|.-+|.|..+..++.. +..+|+|+|.++.+++.|++.+...+ . ++.+++++..
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~---R~~~i~~nF~ 79 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--G---RVVLIHDNFA 79 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--C---cEEEEeCCHH
Confidence 357789999999999999988864 45889999999999999999886542 2 4788888875
No 235
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.18 E-value=2.1e-05 Score=65.30 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=81.2
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
+....|.|+|||-+-++. .-...|+..|+-+. . -.++.+|+.+
T Consensus 179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~--------------~-----~~V~~cDm~~-------------- 221 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV--------------N-----ERVIACDMRN-------------- 221 (325)
T ss_pred cCceEEEecccchhhhhh----ccccceeeeeeecC--------------C-----CceeeccccC--------------
Confidence 345689999999998765 22345788887541 1 2355677664
Q ss_pred ccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEeccC--CCCHHHHHHHHhhc-cccceeee-cCC
Q 026513 149 SSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGIL--SEQLPHIINRYSEF-LEDILVSE-MDD 222 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~~--~~~~~~~~~~~~~~-~~~~~~~~-~~~ 222 (237)
.+..+++.|++++-..+ ..+..++.++.+.|++||.++|..+. ..+...+...+... |....... ...
T Consensus 222 ------vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~ 295 (325)
T KOG3045|consen 222 ------VPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNKY 295 (325)
T ss_pred ------CcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcce
Confidence 22347899999875543 45678999999999999999998774 45566677666654 65554443 334
Q ss_pred EEEEEEEEcc
Q 026513 223 WTCVSGKKKR 232 (237)
Q Consensus 223 w~~~~~~~~~ 232 (237)
+..+.|+|.+
T Consensus 296 F~lfefkK~~ 305 (325)
T KOG3045|consen 296 FTLFEFKKTP 305 (325)
T ss_pred EEEEEEecCC
Confidence 5666666644
No 236
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.16 E-value=4.1e-05 Score=62.50 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=72.4
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+++|.+||-+|+.+|+..-.++.. + ...|+|+|+|+...+..-.-++... .+-.+-.|+..+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~------NIiPIl~DAr~P~--------- 135 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP------NIIPILEDARHPE--------- 135 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST------TEEEEES-TTSGG---------
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC------ceeeeeccCCChH---------
Confidence 678999999999999998888864 4 6789999999988776655554433 2777788876432
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHH-HHHHHhHhcCCCeEEEEe
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQ-LADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~-~l~~~~~~L~~gG~liis 194 (237)
.-+.+ -+..|+|+++..-....+ +..++...||+||+++++
T Consensus 136 ------~Y~~l--v~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 136 ------KYRML--VEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp ------GGTTT--S--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------Hhhcc--cccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 11111 358999999987555544 467788899999999985
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.14 E-value=9.8e-06 Score=70.25 Aligned_cols=87 Identities=16% Similarity=0.297 Sum_probs=62.1
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
+.+|.++||+||++|.++..+.+.|. +|++||..+-. ..+...+ ++....+|.+.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~-----~~L~~~~------~V~h~~~d~fr------------- 263 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA-----QSLMDTG------QVEHLRADGFK------------- 263 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC-----HhhhCCC------CEEEEeccCcc-------------
Confidence 36799999999999999999999977 79999966521 2222222 37777887652
Q ss_pred cccccccCCCC-CCceeEEEEeCChHHHHHHHHHHhHhcCCC
Q 026513 148 LSSHKIRGISQ-TEKYDVVIANILLNPLLQLADHIVSYAKPG 188 (237)
Q Consensus 148 ~~~~~~~~~~~-~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g 188 (237)
+.+ .+.+|+++|+....+. .++..+..+|..|
T Consensus 264 --------~~p~~~~vDwvVcDmve~P~-rva~lm~~Wl~~g 296 (357)
T PRK11760 264 --------FRPPRKNVDWLVCDMVEKPA-RVAELMAQWLVNG 296 (357)
T ss_pred --------cCCCCCCCCEEEEecccCHH-HHHHHHHHHHhcC
Confidence 222 5689999999976554 4456666666555
No 238
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.13 E-value=0.0002 Score=59.14 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=62.8
Q ss_pred cCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
-.|++||=+|=.. ..+++++. ...++|+.+|++++.++..++.++..++. ++....|+.++..+
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-----i~~~~~DlR~~LP~--------- 107 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-----IEAVHYDLRDPLPE--------- 107 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE---TTS---T---------
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-----eEEEEecccccCCH---------
Confidence 4688999999443 34444443 34678999999999999999999999876 88888998754321
Q ss_pred cccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCe-EEEEe
Q 026513 148 LSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGA-VVGIS 194 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG-~liis 194 (237)
.+ .++||+++.+||. ..+.-++.+....|+..| ..|++
T Consensus 108 -------~~--~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 108 -------EL--RGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp -------TT--SS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred -------HH--hcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 11 4799999999995 566778899999998777 55554
No 239
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.13 E-value=3.7e-06 Score=68.09 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=64.9
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
...+|+|..||.|+.++..+.. ...|+++|+||.-+..|+.|++-.|+.+ ++.|++||+++. ..-+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~---rItFI~GD~ld~---------~~~l- 159 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPD---RITFICGDFLDL---------ASKL- 159 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCc---eeEEEechHHHH---------HHHH-
Confidence 3468999999999999999888 4559999999999999999999999987 799999998731 1111
Q ss_pred cccccCCCCCCceeEEEEeCC
Q 026513 150 SHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~ 170 (237)
.+ ....+|+|+..||
T Consensus 160 -----q~-~K~~~~~vf~spp 174 (263)
T KOG2730|consen 160 -----KA-DKIKYDCVFLSPP 174 (263)
T ss_pred -----hh-hhheeeeeecCCC
Confidence 11 1245889998877
No 240
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.11 E-value=1.7e-06 Score=62.83 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=43.7
Q ss_pred EEEcCcchHHHHHHHHh----CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 75 LDYGTGSGILGIAAIKF----GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 75 LDlG~G~G~~~~~la~~----~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
||+|+..|..+..+++. +..+++++|..+. .+.+++.++..++.. +++++.++..+. ++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~---~~~~~~g~s~~~---------l~---- 63 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSD---RVEFIQGDSPDF---------LP---- 63 (106)
T ss_dssp --------------------------EEEESS-------------GGG-B---TEEEEES-THHH---------HH----
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCC---eEEEEEcCcHHH---------HH----
Confidence 68999999888776642 2247999999995 334444444444443 388888887531 11
Q ss_pred ccccCCCCCCceeEEEEeCC--hHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 151 HKIRGISQTEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~--~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+. .+++|+++.+.. .......+..+.+.|+|||.+++.+
T Consensus 64 ----~~~-~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 64 ----SLP-DGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHH-H--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----HcC-CCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 111 469999999985 4555667889999999999999864
No 241
>PRK10742 putative methyltransferase; Provisional
Probab=98.04 E-value=1.7e-05 Score=65.97 Aligned_cols=86 Identities=20% Similarity=0.168 Sum_probs=64.3
Q ss_pred ccCCC--eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCC---CCc--ceEEeccCcccccccccc
Q 026513 68 IKGGE--LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIG---PKK--MKLHLVPDRTFTASMNER 140 (237)
Q Consensus 68 ~~~~~--~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~---~~~--~~v~~~~~d~~~~~~~~~ 140 (237)
+++|. +|||+.+|+|..+..++..|+. |+++|-++.+....++++...... ... -+++++.+|..+..
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L---- 158 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL---- 158 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH----
Confidence 35666 8999999999999999999777 999999999999999988763110 010 14778888876321
Q ss_pred ccccccccccccccCCCCCCceeEEEEeCChHH
Q 026513 141 VDGVVEDLSSHKIRGISQTEKYDVVIANILLNP 173 (237)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~ 173 (237)
... ...||+|+++|++.+
T Consensus 159 -------------~~~--~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 159 -------------TDI--TPRPQVVYLDPMFPH 176 (250)
T ss_pred -------------hhC--CCCCcEEEECCCCCC
Confidence 111 347999999999754
No 242
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.01 E-value=2.1e-05 Score=59.98 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=47.0
Q ss_pred eEEEEcCcchHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513 73 LFLDYGTGSGILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 133 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~ 133 (237)
+++|+|||.|.++..+++.+. .+++++|.++.+.+.+++++..+++.+ +.+++..+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~----v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN----VVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc----EEEEEeeee
Confidence 489999999999999887643 489999999999999999999888764 555555443
No 243
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.01 E-value=0.00018 Score=54.77 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=69.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh---
Q 026513 95 MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--- 171 (237)
Q Consensus 95 ~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--- 171 (237)
+|+|+||-+++++.+++.+...++.+ ++.++..+-. .+....+.+++|+++.|..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~---~v~li~~sHe------------------~l~~~i~~~~v~~~iFNLGYLPg 59 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLED---RVTLILDSHE------------------NLDEYIPEGPVDAAIFNLGYLPG 59 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GS---GEEEEES-GG------------------GGGGT--S--EEEEEEEESB-CT
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCC---cEEEEECCHH------------------HHHhhCccCCcCEEEEECCcCCC
Confidence 58999999999999999999998765 5777776543 23343333689999998753
Q ss_pred ---------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHH-HHHHHHhhccccceeeecCCEEEEEEEE
Q 026513 172 ---------NPLLQLADHIVSYAKPGAVVGISGILSEQLP-HIINRYSEFLEDILVSEMDDWTCVSGKK 230 (237)
Q Consensus 172 ---------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 230 (237)
...-..++.+.++|+|||.+.+..+...... +-.+.+..+. +......|..+..+-
T Consensus 60 gDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~---~~L~~~~~~V~~~~~ 125 (140)
T PF06962_consen 60 GDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFL---ASLDQKEFNVLKYQF 125 (140)
T ss_dssp S-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHH---HTS-TTTEEEEEEEE
T ss_pred CCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHH---HhCCcceEEEEEEEc
Confidence 2223568899999999999999888754422 2222222221 112455677666554
No 244
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.00 E-value=2e-05 Score=71.17 Aligned_cols=123 Identities=18% Similarity=0.158 Sum_probs=70.8
Q ss_pred ccCCCCchhHHHHHHHHHhhccCC--CeEEEEcCcchHHHHHHHHhCCCeE--EEEeCCHHHHHHHHHHHHHcCCCCCcc
Q 026513 48 AFGSGEHATTKLCLLLLRRLIKGG--ELFLDYGTGSGILGIAAIKFGAAMS--VGADIDPQAIKSAHQNAALNNIGPKKM 123 (237)
Q Consensus 48 ~f~~g~~~~~~~~~~~l~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~~v--~~vD~s~~~i~~a~~~~~~~~~~~~~~ 123 (237)
.|-.|...+.+.+.+.+......| ..+||+|||+|+|+.++..++...+ ..-|..+..+..|.+ .|+..
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGvpa--- 165 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGVPA--- 165 (506)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCcch---
Confidence 344444444444444443211222 3699999999999999988754322 223444444444432 24431
Q ss_pred eEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh---HHH-HHHHHHHhHhcCCCeEEEEeccCCC
Q 026513 124 KLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---NPL-LQLADHIVSYAKPGAVVGISGILSE 199 (237)
Q Consensus 124 ~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---~~~-~~~l~~~~~~L~~gG~liis~~~~~ 199 (237)
+.-+-+. .+.+.++..||+|-|.--+ +.. .-++-.+-++|+|||++++|+-...
T Consensus 166 -~~~~~~s---------------------~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 166 -MIGVLGS---------------------QRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred -hhhhhcc---------------------ccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 1101111 1245568899999885433 111 2356778999999999999966433
No 245
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.96 E-value=5.6e-05 Score=64.11 Aligned_cols=100 Identities=23% Similarity=0.346 Sum_probs=64.2
Q ss_pred CeEEEEcCcch-HHHHHHHH-hC-CCeEEEEeCCHHHHHHHHHHHH-HcCCCCCcceEEeccCccccccccccccccccc
Q 026513 72 ELFLDYGTGSG-ILGIAAIK-FG-AAMSVGADIDPQAIKSAHQNAA-LNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 72 ~~vLDlG~G~G-~~~~~la~-~~-~~~v~~vD~s~~~i~~a~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.+|+=||||+= ..++.+++ ++ ...|+++|+++.+++.+++-+. ..+++. ++.|+.+|..+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~---~m~f~~~d~~~~~----------- 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK---RMSFITADVLDVT----------- 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S---SEEEEES-GGGG------------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC---CeEEEecchhccc-----------
Confidence 49999999975 55556664 33 4679999999999999998877 445554 4788888875311
Q ss_pred cccccccCCCCCCceeEEEEeCChH----HHHHHHHHHhHhcCCCeEEEEe
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLN----PLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~----~~~~~l~~~~~~L~~gG~liis 194 (237)
..-..||+|+...... .-.+++.++.+.++||..+++.
T Consensus 188 ---------~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 188 ---------YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ---------GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ---------cccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 1135899999887665 4568999999999999999984
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=0.00024 Score=57.01 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=88.8
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.+|.+||=+|+.+|+..-.++.. +...++++|+|++.....-..+.... ++..+.+|+..+.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~------Ni~PIL~DA~~P~---------- 137 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP------NIIPILEDARKPE---------- 137 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC------CceeeecccCCcH----------
Confidence 578999999999999988888764 66789999999999876665555432 2666777776322
Q ss_pred ccccccccCC-CCCCceeEEEEeCChHHHHHH-HHHHhHhcCCCeEEEEe----cc-CCCCHHHHHH----HHhh-cccc
Q 026513 147 DLSSHKIRGI-SQTEKYDVVIANILLNPLLQL-ADHIVSYAKPGAVVGIS----GI-LSEQLPHIIN----RYSE-FLED 214 (237)
Q Consensus 147 ~~~~~~~~~~-~~~~~fD~I~~n~~~~~~~~~-l~~~~~~L~~gG~liis----~~-~~~~~~~~~~----~~~~-~~~~ 214 (237)
.. ..-++.|+|+.+..-....++ ..++...|++||+++++ ++ .+.++.++.. .+.. +|+.
T Consensus 138 --------~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i 209 (231)
T COG1889 138 --------KYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEI 209 (231)
T ss_pred --------HhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCcee
Confidence 11 113579999999876555554 67789999999988774 44 3555555554 2222 3666
Q ss_pred ceeee
Q 026513 215 ILVSE 219 (237)
Q Consensus 215 ~~~~~ 219 (237)
+++.+
T Consensus 210 ~e~~~ 214 (231)
T COG1889 210 LEVVD 214 (231)
T ss_pred eEEec
Confidence 65543
No 247
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.91 E-value=8.2e-05 Score=56.97 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=42.9
Q ss_pred cCCCeEEEEcCcchHHHHHHHH-----hCCCeEEEEeCCHHHHHHHHHHHHHcC
Q 026513 69 KGGELFLDYGTGSGILGIAAIK-----FGAAMSVGADIDPQAIKSAHQNAALNN 117 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~-----~~~~~v~~vD~s~~~i~~a~~~~~~~~ 117 (237)
.+..+|+|+|||.|+++..++. ....+|+++|.++..++.+++..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4567999999999999999987 556789999999999999998887665
No 248
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.86 E-value=6.1e-05 Score=60.41 Aligned_cols=124 Identities=10% Similarity=0.096 Sum_probs=74.5
Q ss_pred CCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCC--C-cceEEeccCcccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGP--K-KMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.-.+.|||||-|.+.+.++. ++..-+.|.||-..+-++.++.+....-.. . .-.+.+...+....
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~----------- 129 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF----------- 129 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh-----------
Confidence 34699999999999999995 577889999999999998888776543110 0 00133333333211
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHH-----------HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPL-----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSEF 211 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~-----------~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~ 211 (237)
+..++..++.+-.+.-.|-.+. ..++.+..-+|++||.+|.+.-..+--......+..+
T Consensus 130 ------lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~h 199 (249)
T KOG3115|consen 130 ------LPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEH 199 (249)
T ss_pred ------ccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhC
Confidence 1122223333333332222122 2467778889999999999755444444444444444
No 249
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.85 E-value=2.1e-05 Score=64.24 Aligned_cols=88 Identities=24% Similarity=0.320 Sum_probs=56.7
Q ss_pred ccCCCeEEEEcCcch-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc-CCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSG-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN-NIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
..++.++||||.|.- ++.+.-.+...-+.+|.|+|+.+++.|+.++..| ++.. .+++.. +.|-. .
T Consensus 76 ~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~-~I~lr~-qk~~~-~---------- 142 (292)
T COG3129 76 PGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLER-AIRLRR-QKDSD-A---------- 142 (292)
T ss_pred CcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhh-heeEEe-ccCcc-c----------
Confidence 346678999999965 4444433333456899999999999999999988 4442 222221 11111 0
Q ss_pred cccccccccCC-CCCCceeEEEEeCChHHH
Q 026513 146 EDLSSHKIRGI-SQTEKYDVVIANILLNPL 174 (237)
Q Consensus 146 ~~~~~~~~~~~-~~~~~fD~I~~n~~~~~~ 174 (237)
.+... -..+.||++.||||+|..
T Consensus 143 ------if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 143 ------IFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ------cccccccccceeeeEecCCCcchh
Confidence 11111 225789999999998654
No 250
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.81 E-value=0.00035 Score=59.13 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhhcc------CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513 56 TTKLCLLLLRRLIK------GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA 113 (237)
Q Consensus 56 ~~~~~~~~l~~~~~------~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~ 113 (237)
.-..++..|....+ ...+||-.|||.|.++..+|..|.. +.|.|.|--|+=...-.+
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiL 98 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFIL 98 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHH
Confidence 33445555555433 2468999999999999999999774 999999999865555433
No 251
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.80 E-value=0.00043 Score=56.18 Aligned_cols=107 Identities=16% Similarity=0.214 Sum_probs=77.8
Q ss_pred HhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513 65 RRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV 144 (237)
Q Consensus 65 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 144 (237)
+....+|.|||++|-|-|+..-.+-..+..+-+.+|..|..++..+...... +-++.++.+-+.+.
T Consensus 96 ~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-----k~nViil~g~WeDv--------- 161 (271)
T KOG1709|consen 96 EAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-----KENVIILEGRWEDV--------- 161 (271)
T ss_pred HHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-----ccceEEEecchHhh---------
Confidence 3345778999999999999888777665555688999999998887764322 22377777766531
Q ss_pred ccccccccccCCCCCCceeEEEEeCC---hHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANIL---LNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~---~~~~~~~l~~~~~~L~~gG~liis 194 (237)
+..+ +++.||-|+-+.- .+.+.++.+.+.++|||+|++-+-
T Consensus 162 --------l~~L-~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 162 --------LNTL-PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred --------hccc-cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 1122 3667999998764 344457788999999999998764
No 252
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.77 E-value=0.00052 Score=51.00 Aligned_cols=101 Identities=25% Similarity=0.444 Sum_probs=64.3
Q ss_pred EEEEcCcchHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513 74 FLDYGTGSGILGIAAIKFGA--AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH 151 (237)
Q Consensus 74 vLDlG~G~G~~~~~la~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 151 (237)
++|+|||+|... .+..... ..++++|+++.+++.++.......... +.+...|....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---------------- 110 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL----VDFVVADALGG---------------- 110 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc----eEEEEeccccC----------------
Confidence 999999999876 4444322 378999999999998554443221110 34555554310
Q ss_pred cccCCCCC-CceeEEEEeCChHH--HHHHHHHHhHhcCCCeEEEEeccC
Q 026513 152 KIRGISQT-EKYDVVIANILLNP--LLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 152 ~~~~~~~~-~~fD~I~~n~~~~~--~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
...+ .. ..||++.+....+. ....+..+.+.++|+|.+++....
T Consensus 111 -~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 111 -VLPF-EDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred -CCCC-CCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 0011 12 47999944443332 357789999999999999997553
No 253
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.72 E-value=0.0018 Score=55.27 Aligned_cols=73 Identities=23% Similarity=0.192 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhh-ccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcc
Q 026513 56 TTKLCLLLLRRL-IKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRT 132 (237)
Q Consensus 56 ~~~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~ 132 (237)
.+-++.+.+..+ ..++...+|.--|.|+.+..+... + ..+++|+|-++.+++.|++.+...+- ++.++++++
T Consensus 8 ipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~-----r~~~v~~~F 82 (314)
T COG0275 8 IPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG-----RVTLVHGNF 82 (314)
T ss_pred cchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC-----cEEEEeCcH
Confidence 334444444432 467789999999999999988764 3 46799999999999999999876552 477888776
Q ss_pred c
Q 026513 133 F 133 (237)
Q Consensus 133 ~ 133 (237)
.
T Consensus 83 ~ 83 (314)
T COG0275 83 A 83 (314)
T ss_pred H
Confidence 4
No 254
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00047 Score=52.70 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=80.7
Q ss_pred CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513 72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH 151 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 151 (237)
.+.+|+|+|.|.+.+..++.|....+|+|++|-.+.+++-.+-..++.. +..|...|.+...
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k---~trf~RkdlwK~d--------------- 135 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAK---STRFRRKDLWKVD--------------- 135 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhccc---chhhhhhhhhhcc---------------
Confidence 3799999999999999999988889999999999999998888788765 4667777766322
Q ss_pred cccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513 152 KIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSE 199 (237)
Q Consensus 152 ~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~ 199 (237)
-..|..+++...-..+..+-.++..-++.+..++-.-|.-+
T Consensus 136 -------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 136 -------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred -------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 23566666666556667778888888899999888766444
No 255
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.71 E-value=0.00056 Score=58.27 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=66.3
Q ss_pred CCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
..+|||+|||+|.-..++... ...+++++|.|+.+++.++..+....... .... .....
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~---~~~~-~~~~~--------------- 94 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR---NAEW-RRVLY--------------- 94 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc---cchh-hhhhh---------------
Confidence 458999999999876665542 45679999999999999998765432111 0100 11110
Q ss_pred ccccccCCCCCCceeEEEEeCChHH-----HHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNP-----LLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS 209 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~-----~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~ 209 (237)
.....-.+.|+|++..++.. ...+++.+...+.+ +|++..--+...-+.+...+
T Consensus 95 -----~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR 153 (274)
T PF09243_consen 95 -----RDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEAR 153 (274)
T ss_pred -----cccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHH
Confidence 01111234499998766422 23456666665555 77776554444334443333
No 256
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.71 E-value=0.00037 Score=58.68 Aligned_cols=118 Identities=21% Similarity=0.233 Sum_probs=66.4
Q ss_pred CeEEEEcCcch--HHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 72 ELFLDYGTGSG--ILGIAAIK--FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 72 ~~vLDlG~G~G--~~~~~la~--~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
...||||||-- ..+-.+++ .+..+|+-+|.+|.++..++..+..+.-. ...++++|++++. .+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g----~t~~v~aD~r~p~------~i--- 136 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRG----RTAYVQADLRDPE------AI--- 136 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTS----EEEEEE--TT-HH------HH---
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCc----cEEEEeCCCCCHH------HH---
Confidence 57999999953 23334443 47889999999999999999888766432 3778899988542 11
Q ss_pred cccccccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEEeccCCCCHH
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGILSEQLP 202 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~liis~~~~~~~~ 202 (237)
+.+...+.+..-...=.++....++++ ..++..+...|.||.+|.+|....+...
T Consensus 137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p 197 (267)
T PF04672_consen 137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP 197 (267)
T ss_dssp HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH
T ss_pred hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH
Confidence 111122222221233344444445444 4789999999999999999977655433
No 257
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=6.7e-05 Score=58.12 Aligned_cols=122 Identities=14% Similarity=0.194 Sum_probs=78.1
Q ss_pred CCCeEEEEcCc-chHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 70 GGELFLDYGTG-SGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 70 ~~~~vLDlG~G-~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.|.+||++|.| +|.-++.+|.. +...|..+|-++..++..++....|-.+. -.+..++.-++..
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~-~tsc~vlrw~~~~------------- 94 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS-LTSCCVLRWLIWG------------- 94 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc-cceehhhHHHHhh-------------
Confidence 47899999999 46666777754 67789999999999999888776653221 1112221111110
Q ss_pred cccccccCCCCCCceeEEEEeC-Ch--HHHHHHHHHHhHhcCCCeEEEEecc-CCCCHHHHHHHHhh
Q 026513 148 LSSHKIRGISQTEKYDVVIANI-LL--NPLLQLADHIVSYAKPGAVVGISGI-LSEQLPHIINRYSE 210 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~-~~--~~~~~~l~~~~~~L~~gG~liis~~-~~~~~~~~~~~~~~ 210 (237)
........+||+|+|.. .+ ++-..+++.+..+|+|.|..++... ..++...+.+....
T Consensus 95 -----aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~ 156 (201)
T KOG3201|consen 95 -----AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGT 156 (201)
T ss_pred -----hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHh
Confidence 00111235899999843 32 3445788999999999999877533 44555556655554
No 258
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.69 E-value=0.0002 Score=62.05 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=75.1
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
-...+|+|.|.|..+..+... ..+|.+++++...+-.++.++. .| +..+.+|.+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g-------V~~v~gdmfq---------------- 232 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG-------VEHVAGDMFQ---------------- 232 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC-------cceecccccc----------------
Confidence 378999999999999888774 6779999999999888877765 44 5577888763
Q ss_pred ccccCCCCCCceeEEEEeCChHHH-----HHHHHHHhHhcCCCeEEEEecc
Q 026513 151 HKIRGISQTEKYDVVIANILLNPL-----LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~~~~~-----~~~l~~~~~~L~~gG~liis~~ 196 (237)
. ..+-|+|++-..+++. -++++++...|+|||.+++-..
T Consensus 233 ----~---~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 233 ----D---TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ----c---CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 1 2356799987777654 4789999999999999999755
No 259
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.67 E-value=0.00064 Score=62.57 Aligned_cols=124 Identities=25% Similarity=0.321 Sum_probs=83.0
Q ss_pred CCchhHHHHHHHHHhhc--cCCCeEEEEcCcchHHHHHHHHh-C----CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcce
Q 026513 52 GEHATTKLCLLLLRRLI--KGGELFLDYGTGSGILGIAAIKF-G----AAMSVGADIDPQAIKSAHQNAALNNIGPKKMK 124 (237)
Q Consensus 52 g~~~~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~la~~-~----~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~ 124 (237)
|.+-+.+...+++...+ .+..+|+|..||+|.+....... + ...++|.|+++.....|+.|+-.+++.. .
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~---~ 242 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG---D 242 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc---c
Confidence 34445555555554443 36779999999999887766543 1 2568999999999999999999888763 2
Q ss_pred EEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChH------------------H---------H-HH
Q 026513 125 LHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLN------------------P---------L-LQ 176 (237)
Q Consensus 125 v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~------------------~---------~-~~ 176 (237)
+....+|-..-+.. ..-...++||+|++|||+. . . ..
T Consensus 243 ~~i~~~dtl~~~~~---------------~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 307 (489)
T COG0286 243 ANIRHGDTLSNPKH---------------DDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLA 307 (489)
T ss_pred ccccccccccCCcc---------------cccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHH
Confidence 44555654321100 0011236899999999952 0 0 24
Q ss_pred HHHHHhHhcCCCeEEEE
Q 026513 177 LADHIVSYAKPGAVVGI 193 (237)
Q Consensus 177 ~l~~~~~~L~~gG~lii 193 (237)
+++.+...|+|||..-+
T Consensus 308 f~~h~~~~l~~~g~aai 324 (489)
T COG0286 308 FLQHILYKLKPGGRAAI 324 (489)
T ss_pred HHHHHHHhcCCCceEEE
Confidence 68899999999875443
No 260
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=2.9e-05 Score=69.76 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=83.7
Q ss_pred cCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.++.+|||.-|++|.-++..++. +..+|++.|.++++++..++|++.|+..+ .++....|+...+..
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~---ive~~~~DA~~lM~~-------- 176 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVED---IVEPHHSDANVLMYE-------- 176 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchh---hcccccchHHHHHHh--------
Confidence 45678999999999999988864 67889999999999999999999998765 456666776421110
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
.......||+|-.+| +.....+++.+.+.++.||.|++.
T Consensus 177 --------~~~~~~~FDvIDLDP-yGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 177 --------HPMVAKFFDVIDLDP-YGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred --------ccccccccceEecCC-CCCccHHHHHHHHHhhcCCEEEEE
Confidence 111246899999988 555567889999999999999995
No 261
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.60 E-value=0.00012 Score=64.54 Aligned_cols=104 Identities=21% Similarity=0.115 Sum_probs=81.1
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
+.++..++|+|||.|....+.+.+....++|+|+++..+..+........+.+. -.++.+|...
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k---~~~~~~~~~~------------- 171 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNK---CNFVVADFGK------------- 171 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhh---cceehhhhhc-------------
Confidence 567778999999999999999999888899999999999888877776666652 3345555542
Q ss_pred cccccccCCCCCCceeEEEEeCChHHH---HHHHHHHhHhcCCCeEEEEe
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPL---LQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l~~~~~~L~~gG~liis 194 (237)
.++.+..||.+.+.-...+. ..+++++.+.++|||+.+..
T Consensus 172 -------~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 172 -------MPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -------CCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 33446789999886654333 46788999999999999984
No 262
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.59 E-value=0.00019 Score=58.17 Aligned_cols=137 Identities=17% Similarity=0.161 Sum_probs=73.8
Q ss_pred CCeEEEEcCcchHHHHHHHH-h--CCCeEEEEeCCHHHHHHHHHHHHHc---CCC-------------------------
Q 026513 71 GELFLDYGTGSGILGIAAIK-F--GAAMSVGADIDPQAIKSAHQNAALN---NIG------------------------- 119 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~-~--~~~~v~~vD~s~~~i~~a~~~~~~~---~~~------------------------- 119 (237)
+-++.|.+||+|++.-.+.. + ....|+|.|+++.+++.|++|+... |++
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA 131 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA 131 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 45899999999988665543 2 3467999999999999999986411 100
Q ss_pred ----------CCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCCh------------HHHHHH
Q 026513 120 ----------PKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL------------NPLLQL 177 (237)
Q Consensus 120 ----------~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~~~~ 177 (237)
.......+.+.|++++.... ........|+|+.+.|+ .+...+
T Consensus 132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~---------------~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~m 196 (246)
T PF11599_consen 132 DRLRERLAAEGGDEPHAIFRADVFDPSPLA---------------VLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQM 196 (246)
T ss_dssp HHHHHHHHHTTSS--EEEEE--TT-HHHHH---------------HHHTT---SEEEEE--CCCSSSTTS---HHHHHHH
T ss_pred HHHHHHHHhcCCCCchhheeecccCCchhh---------------hhccCCCCCEEEecCCCcccccccCCCCCCcHHHH
Confidence 01112334455555432110 01112347999999884 455789
Q ss_pred HHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhhccccceeeecCCEEEEEEE
Q 026513 178 ADHIVSYAKPGAVVGISGILSEQLPHIINRYSEFLEDILVSEMDDWTCVSGK 229 (237)
Q Consensus 178 l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 229 (237)
++.+...|..++++.++ ....+.. . ..|..++....|.-...+++
T Consensus 197 l~~l~~vLp~~sVV~v~-~k~~Ki~---~---~~~r~~~rlKvGkR~~~l~r 241 (246)
T PF11599_consen 197 LNSLAPVLPERSVVAVS-DKGRKIP---H---DRFRRLERLKVGKRQAALFR 241 (246)
T ss_dssp HHHHHCCS-TT-EEEEE-ESSSS---------TTS--SEEEEETTEEEEEEE
T ss_pred HHHHHhhCCCCcEEEEe-cCCcccc---c---chhHHHHHHhccceEEEEEe
Confidence 99999999777777773 3333222 1 23455555566666665553
No 263
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.0016 Score=56.89 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=75.4
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh---C--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF---G--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD 142 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~---~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 142 (237)
++||.+|||+++-+|.-+..+.+. . ...|++-|+++.-+...+..+...+..+ ..+...|.....-.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~----~~v~~~~~~~~p~~---- 224 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN----LLVTNHDASLFPNI---- 224 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc----eeeecccceecccc----
Confidence 578999999999999888776643 2 2379999999999888877775444333 44444443321100
Q ss_pred ccccccccccccCC--CCCCceeEEEEeCCh-------------------------HH-HHHHHHHHhHhcCCCeEEEEe
Q 026513 143 GVVEDLSSHKIRGI--SQTEKYDVVIANILL-------------------------NP-LLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 143 ~~~~~~~~~~~~~~--~~~~~fD~I~~n~~~-------------------------~~-~~~~l~~~~~~L~~gG~liis 194 (237)
..... .....||-|+|+.|. +. .-.++.+..++|++||.++.|
T Consensus 225 ---------~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 225 ---------YLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred ---------ccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 00000 123479999999871 11 135789999999999999998
Q ss_pred cc
Q 026513 195 GI 196 (237)
Q Consensus 195 ~~ 196 (237)
+.
T Consensus 296 TC 297 (375)
T KOG2198|consen 296 TC 297 (375)
T ss_pred cc
Confidence 43
No 264
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.52 E-value=0.00026 Score=60.99 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=53.1
Q ss_pred ccCCCeEEEEcCcchHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
..++..++|.--|.|+.+..+.. .+..+++|+|-|+.+++.|++++... .+ ++.++++++.+. .+.+.
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~---r~~~~~~~F~~l------~~~l~ 86 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DD---RFIFIHGNFSNL------DEYLK 86 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CT---TEEEEES-GGGH------HHHHH
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cc---eEEEEeccHHHH------HHHHH
Confidence 46778999999999999998875 46689999999999999998877644 22 478888886531 11111
Q ss_pred ccccccccCCCCCCceeEEEEeCC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~ 170 (237)
. .....++|.|+.+..
T Consensus 87 ~--------~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 87 E--------LNGINKVDGILFDLG 102 (310)
T ss_dssp H--------TTTTS-EEEEEEE-S
T ss_pred H--------ccCCCccCEEEEccc
Confidence 1 112357899988664
No 265
>PHA01634 hypothetical protein
Probab=97.40 E-value=0.00041 Score=51.63 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=47.0
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCC
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIG 119 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~ 119 (237)
-.+++|+|+|.+.|.-+++++..|+.+|++++.++...+..+++++.+.+-
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~ 77 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC 77 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee
Confidence 358899999999999999999999999999999999999999999887654
No 266
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.36 E-value=0.00068 Score=55.25 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=40.3
Q ss_pred HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513 58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQ 111 (237)
Q Consensus 58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~ 111 (237)
.++.+.++..-.+|..|||..||+|+.+.++.+. .++.+|+|+++..++.|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 4444555555678999999999999999998888 4559999999999999874
No 267
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00095 Score=56.62 Aligned_cols=107 Identities=20% Similarity=0.144 Sum_probs=79.6
Q ss_pred CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
..++||-+|-|.|.+....+++ ....+..+|++...++..++.+...-.....-++.+.-||.+.+.
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl------------ 188 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL------------ 188 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH------------
Confidence 4578999999999998887765 457899999999999999988765433333335777788887322
Q ss_pred ccccccCCCCCCceeEEEEeCC--h-----HHHHHHHHHHhHhcCCCeEEEEe
Q 026513 149 SSHKIRGISQTEKYDVVIANIL--L-----NPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~--~-----~~~~~~l~~~~~~L~~gG~liis 194 (237)
...+..+||+|+.+.. . -....++..+.+.||++|++++.
T Consensus 189 ------~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 189 ------EDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred ------HHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 2223579999997543 1 22346788899999999999985
No 268
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.32 E-value=0.00029 Score=59.78 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=69.9
Q ss_pred CCCeEEEEcCcchHHHH-HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGI-AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~-~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.+..|.|+.+|-|+|+. .+...|++.|+++|.+|.+++..++++..|++.. +..++.+|-.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~---r~~i~~gd~R--------------- 255 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMD---RCRITEGDNR--------------- 255 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHH---HHHhhhcccc---------------
Confidence 46899999999999999 5668899999999999999999999999998765 4556667654
Q ss_pred ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeE
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAV 190 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~ 190 (237)
...++...|-|.....- ...+-...+...|+|.|.
T Consensus 256 ------~~~~~~~AdrVnLGLlP-Sse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 256 ------NPKPRLRADRVNLGLLP-SSEQGWPTAIKALKPEGG 290 (351)
T ss_pred ------ccCccccchheeecccc-ccccchHHHHHHhhhcCC
Confidence 33345677888765422 222223345556666554
No 269
>PRK11524 putative methyltransferase; Provisional
Probab=97.30 E-value=0.001 Score=56.94 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=46.7
Q ss_pred HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Q 026513 58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL 115 (237)
Q Consensus 58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~ 115 (237)
.++.+.++..-.+|..|||..+|+|+.++++.+. .++.+|+|++++.++.|++++..
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4444444445578999999999999999998888 45699999999999999998753
No 270
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.29 E-value=3.2e-05 Score=62.24 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=63.1
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
..++||+|+|.|-++..++.. ..+|+++|.|..|+...++. +.. +- ...++.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~yn-----Vl-~~~ew~~---------------- 165 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NYN-----VL-TEIEWLQ---------------- 165 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CCc-----ee-eehhhhh----------------
Confidence 468999999999999998876 66799999999998766543 211 11 1122211
Q ss_pred ccccCCCCCCceeEEEEeCChHH---HHHHHHHHhHhcCC-CeEEEEe
Q 026513 151 HKIRGISQTEKYDVVIANILLNP---LLQLADHIVSYAKP-GAVVGIS 194 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~~~~---~~~~l~~~~~~L~~-gG~liis 194 (237)
-+-+||+|.|--.++. .-++++.+...|+| +|+++++
T Consensus 166 -------t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 166 -------TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred -------cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 1458999998554422 13578888999988 9998875
No 271
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.28 E-value=0.0021 Score=52.18 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHH----h-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc
Q 026513 55 ATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIK----F-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP 129 (237)
Q Consensus 55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~----~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~ 129 (237)
|......+.+-..++| ..|+|+|.-.|+-++.+|. . +.++|+|+|++-+.... +.....+... ++++++
T Consensus 18 P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~---rI~~i~ 91 (206)
T PF04989_consen 18 PQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSP---RITFIQ 91 (206)
T ss_dssp HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----T---TEEEEE
T ss_pred HHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccC---ceEEEE
Confidence 3344444444444454 5899999999877766552 3 56889999996544322 1122223333 588999
Q ss_pred CccccccccccccccccccccccccCCCCCCceeEEEEeCC--hHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 130 DRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~--~~~~~~~l~~~~~~L~~gG~liis 194 (237)
||..++..-+.+ ..........+|+.+.. ..+...-++....++++|+++++-
T Consensus 92 Gds~d~~~~~~v------------~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 92 GDSIDPEIVDQV------------RELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp S-SSSTHHHHTS------------GSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred CCCCCHHHHHHH------------HHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 998754322211 12222346678887764 233344567789999999999984
No 272
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.28 E-value=0.0005 Score=61.15 Aligned_cols=54 Identities=24% Similarity=0.452 Sum_probs=48.6
Q ss_pred eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc
Q 026513 73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP 129 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~ 129 (237)
.|||+|+|+|.+++.+++.|+..|+++|.-..|.+.|++...++|.+. ++.++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~Sd---kI~vIn 122 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSD---KINVIN 122 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCcc---ceeeec
Confidence 599999999999999999999999999999999999999999999886 455544
No 273
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.25 E-value=0.0033 Score=51.22 Aligned_cols=140 Identities=13% Similarity=0.125 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHhhcc------CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEec
Q 026513 55 ATTKLCLLLLRRLIK------GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLV 128 (237)
Q Consensus 55 ~~~~~~~~~l~~~~~------~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~ 128 (237)
...+.++++++.... ...++||+||=+...... ..+.-.|+.||+++.. -.+.
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~-------------------~~I~ 88 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQH-------------------PGIL 88 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCCC-------------------CCce
Confidence 456788888876422 125999999854433222 2344459999998821 2244
Q ss_pred cCccccccccccccccccccccccccCCCCCCceeEEEEeCChHH------HHHHHHHHhHhcCCCeE-----EEEe---
Q 026513 129 PDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP------LLQLADHIVSYAKPGAV-----VGIS--- 194 (237)
Q Consensus 129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~------~~~~l~~~~~~L~~gG~-----liis--- 194 (237)
+.|+.+.+++. ...++||+|.+..++.. ..+++.++.++|+|+|. |++.
T Consensus 89 qqDFm~rplp~-----------------~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 89 QQDFMERPLPK-----------------NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred eeccccCCCCC-----------------CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 66766433220 12578999998665432 34789999999999999 7763
Q ss_pred -ccCCCC---HHHHHHHHhhc-cccceeeecCCEEEEEEEEcc
Q 026513 195 -GILSEQ---LPHIINRYSEF-LEDILVSEMDDWTCVSGKKKR 232 (237)
Q Consensus 195 -~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~ 232 (237)
|+.... ...+...+..- |..+.......-.+..+++..
T Consensus 152 ~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~~ 194 (219)
T PF11968_consen 152 PCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRKSG 194 (219)
T ss_pred hHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEeecC
Confidence 442221 22333333332 666666666666666666543
No 274
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.21 E-value=0.0033 Score=52.50 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=69.3
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcc--eEEeccCcccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKM--KLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
..+||++|+|+|..++.++.....+|...|...... ..+.+...++...... .+.+...+|.++...
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~-~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~---------- 155 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE-NLKFNRDKNNIALNQLGGSVIVAILVWGNALDV---------- 155 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH-HHHHhhhhhhhhhhhcCCceeEEEEecCCcccH----------
Confidence 446999999999999998887778888888877443 3333333222211111 244445555433211
Q ss_pred ccccccCCCCCCceeEEEEeCCh---HHHHHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513 149 SSHKIRGISQTEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISGILSEQ 200 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~---~~~~~~l~~~~~~L~~gG~liis~~~~~~ 200 (237)
.......+|+|++.-++ +....++..+..+|..++.+++...+...
T Consensus 156 ------~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~ 204 (248)
T KOG2793|consen 156 ------SFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRD 204 (248)
T ss_pred ------hhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecccc
Confidence 11111128999975543 34456778888888899977776665553
No 275
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.21 E-value=0.0026 Score=52.99 Aligned_cols=89 Identities=18% Similarity=0.077 Sum_probs=58.8
Q ss_pred HHHHHhhccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccc
Q 026513 61 LLLLRRLIKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNE 139 (237)
Q Consensus 61 ~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 139 (237)
.+.+...+++..+|+|||||.-=+++..... +...++|.||+..+++.....+...+.. ..+...|...
T Consensus 96 Y~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-----~~~~v~Dl~~----- 165 (251)
T PF07091_consen 96 YDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP-----HDARVRDLLS----- 165 (251)
T ss_dssp HHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C-----EEEEEE-TTT-----
T ss_pred HHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC-----cceeEeeeec-----
Confidence 3333333455779999999998888776543 4568999999999999999998877754 4444455542
Q ss_pred cccccccccccccccCCCCCCceeEEEEeCChHHHH
Q 026513 140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLL 175 (237)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~ 175 (237)
-.+....|+++.--.++.+.
T Consensus 166 ----------------~~~~~~~DlaLllK~lp~le 185 (251)
T PF07091_consen 166 ----------------DPPKEPADLALLLKTLPCLE 185 (251)
T ss_dssp ----------------SHTTSEESEEEEET-HHHHH
T ss_pred ----------------cCCCCCcchhhHHHHHHHHH
Confidence 22356899999988777664
No 276
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.14 E-value=0.0014 Score=55.92 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=53.1
Q ss_pred eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513 73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK 152 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (237)
+++|+.||.|.+...+.+.|...+.++|+++.+++..+.|... . ++.+|+.+....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---------~-~~~~Di~~~~~~-------------- 57 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---------K-LIEGDITKIDEK-------------- 57 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---------C-CccCccccCchh--------------
Confidence 6999999999999988888888899999999999988877531 1 345665421100
Q ss_pred ccCCCCCCceeEEEEeCCh
Q 026513 153 IRGISQTEKYDVVIANILL 171 (237)
Q Consensus 153 ~~~~~~~~~fD~I~~n~~~ 171 (237)
.. ...+|+++..+|.
T Consensus 58 --~~--~~~~D~l~~gpPC 72 (275)
T cd00315 58 --DF--IPDIDLLTGGFPC 72 (275)
T ss_pred --hc--CCCCCEEEeCCCC
Confidence 11 2479999999984
No 277
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.10 E-value=0.0011 Score=54.38 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=82.5
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--C----C----CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--G----A----AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASM 137 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~----~----~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 137 (237)
+..-.|++|+++-+|..+..+++. . . .+|+++|+-+.+ ++.. +..+++|+...+.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G----V~qlq~DIT~~st 103 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG----VIQLQGDITSAST 103 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc----eEEeecccCCHhH
Confidence 344578999999999999888753 1 1 139999998844 4443 7788999886554
Q ss_pred cccccccccccccccccCCCCCCceeEEEEeCC-----hHHHH---------HHHHHHhHhcCCCeEEEEeccCCCCHHH
Q 026513 138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANIL-----LNPLL---------QLADHIVSYAKPGAVVGISGILSEQLPH 203 (237)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~-----~~~~~---------~~l~~~~~~L~~gG~liis~~~~~~~~~ 203 (237)
.+.+ -..+.+++.|+|+|+.. +|.+. ..+.-....|+|||.++--=+......-
T Consensus 104 ae~I------------i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tsl 171 (294)
T KOG1099|consen 104 AEAI------------IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSL 171 (294)
T ss_pred HHHH------------HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHH
Confidence 3211 12234569999999875 33332 2355566789999999887666777777
Q ss_pred HHHHHhhccccc
Q 026513 204 IINRYSEFLEDI 215 (237)
Q Consensus 204 ~~~~~~~~~~~~ 215 (237)
+-.+++.+|.-+
T Consensus 172 Lysql~~ff~kv 183 (294)
T KOG1099|consen 172 LYSQLRKFFKKV 183 (294)
T ss_pred HHHHHHHHhhce
Confidence 777777665443
No 278
>PRK13699 putative methylase; Provisional
Probab=97.06 E-value=0.0031 Score=52.24 Aligned_cols=57 Identities=23% Similarity=0.240 Sum_probs=45.9
Q ss_pred HHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 59 LCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 59 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
++...++..-.+|..|||..||+|+.++++.+.+ .+.+|+|+++...+.|.+++...
T Consensus 152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHHH
Confidence 3444444445689999999999999999888885 45899999999999999887653
No 279
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.01 E-value=0.0016 Score=53.97 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=47.3
Q ss_pred CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCC-----cceEEeccCcccccccccccccccc
Q 026513 72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPK-----KMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.+|||.-+|-|.-+..++..|. +|+++|-||-+....+..+....-... .-+++++++|..+..
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L---------- 145 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL---------- 145 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC----------
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH----------
Confidence 3899999999999999888865 699999999887776654432211111 126888899876321
Q ss_pred ccccccccCCCCCCceeEEEEeCChHH
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNP 173 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~ 173 (237)
. .+..+||+|+++|++..
T Consensus 146 --------~-~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 146 --------R-QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp --------C-CHSS--SEEEE--S---
T ss_pred --------h-hcCCCCCEEEECCCCCC
Confidence 1 23579999999998754
No 280
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0082 Score=54.36 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=73.4
Q ss_pred ccCCC-eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGE-LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~-~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.+-. +++-+|||+--+...+-.-|...|+.+|+|+.+++.+...... ... ...+...|...
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~---~~~--~~~~~~~d~~~------------ 107 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK---ERP--EMQMVEMDMDQ------------ 107 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc---CCc--ceEEEEecchh------------
Confidence 44555 9999999999888888888999999999999999887654321 111 25566677653
Q ss_pred ccccccccCCCCCCceeEEEEeCCh-------------HHHHHHHHHHhHhcCCCeEEEEec
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILL-------------NPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~-------------~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
...++++||+|+.=+.+ .+....+..+.+++++||..+.-.
T Consensus 108 --------l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 108 --------LVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred --------ccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 22346778887753322 233466889999999999977643
No 281
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.91 E-value=0.0053 Score=51.75 Aligned_cols=102 Identities=18% Similarity=0.106 Sum_probs=77.4
Q ss_pred CCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.|+.|+-+| -.-..+++++.. ...+|..+|++++.++...+.+...++.+ ++.+.-|+.++...+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~----ie~~~~Dlr~plpe~--------- 217 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN----IEAFVFDLRNPLPED--------- 217 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc----hhheeehhcccChHH---------
Confidence 467899999 556667766643 36789999999999999999999999886 777777776543221
Q ss_pred ccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCC---eEEEEe
Q 026513 149 SSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPG---AVVGIS 194 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~g---G~liis 194 (237)
..++||+.+.+||. ..++.++.+-...|+.- |++.++
T Consensus 218 ---------~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 218 ---------LKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred ---------HHhhCCeeecCchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 14699999999984 45567788877888877 677765
No 282
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.89 E-value=0.001 Score=56.14 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=69.2
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
..|..++|+|||.|-++. ..+...++|.|++...+..+++. +.. ....+|+..
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~----~~~------~~~~ad~l~-------------- 96 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS----GGD------NVCRADALK-------------- 96 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC----CCc------eeehhhhhc--------------
Confidence 458899999999996642 22556689999999988877643 211 233455542
Q ss_pred ccccccCCCCCCceeEEEEeCChHHHH------HHHHHHhHhcCCCeEEEEecc
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPLL------QLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~------~~l~~~~~~L~~gG~liis~~ 196 (237)
.+....+||.+++-.++|++. .+++++.+.|+|||...+-..
T Consensus 97 ------~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 97 ------LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred ------CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 233467899999988888873 568999999999999877544
No 283
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.88 E-value=0.0035 Score=55.27 Aligned_cols=105 Identities=22% Similarity=0.344 Sum_probs=69.5
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-ccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGVV 145 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~ 145 (237)
.++.+|+-+|||+ |.++..+++ .|+.+|+++|.++.-++.|++......+.+ ... +...
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~-------~~~~~~~~----------- 228 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVN-------PSEDDAGA----------- 228 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeec-------CccccHHH-----------
Confidence 3444999999998 888877776 588999999999999999987432111110 001 1000
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQ 200 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~ 200 (237)
..........+|+++-... ....+..+..+++++|.+.+-++....
T Consensus 229 ------~~~~~t~g~g~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 229 ------EILELTGGRGADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ------HHHHHhCCCCCCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 0001112347999996554 334667888999999999998776444
No 284
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.79 E-value=0.0048 Score=53.17 Aligned_cols=107 Identities=20% Similarity=0.217 Sum_probs=67.2
Q ss_pred hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513 67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV 144 (237)
Q Consensus 67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 144 (237)
.+++|.+||-+|+|+ |.++...|+ .|+.+|+.+|+++..++.|++ + |.+. +....... . .+.+.+.
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~----~~~~~~~~---~-~~~~~~~ 233 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATV----TDPSSHKS---S-PQELAEL 233 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeE----Eeeccccc---c-HHHHHHH
Confidence 367899999999997 888887776 599999999999999999997 3 3221 22111111 0 0000000
Q ss_pred ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
++ .......+|+.|.-.-.+ .-++.....++.||.+++.++
T Consensus 234 v~--------~~~g~~~~d~~~dCsG~~---~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 234 VE--------KALGKKQPDVTFDCSGAE---VTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred HH--------hhccccCCCeEEEccCch---HHHHHHHHHhccCCEEEEecc
Confidence 00 111124588888654333 234556778899999887654
No 285
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.76 E-value=0.023 Score=48.77 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhhccC------CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc
Q 026513 56 TTKLCLLLLRRLIKG------GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP 129 (237)
Q Consensus 56 ~~~~~~~~l~~~~~~------~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~ 129 (237)
+...+++.+..+.++ ..++|-.|||.|.++..++..|.. +-|-|+|--|+=.-.-.+......++..-.=+++
T Consensus 130 ~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 130 LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 334455555554443 458999999999999999998765 6788888877644333332222222111111111
Q ss_pred Ccccc---------cccccc---------------ccccccccccccccCCCCCCceeEEEEeCCh---HHHHHHHHHHh
Q 026513 130 DRTFT---------ASMNER---------------VDGVVEDLSSHKIRGISQTEKYDVVIANILL---NPLLQLADHIV 182 (237)
Q Consensus 130 ~d~~~---------~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---~~~~~~l~~~~ 182 (237)
..... ...+|. .+++++-.. .....+.||+|+....+ +.+-++++.+.
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~-----~s~~~~~~d~VvTcfFIDTa~NileYi~tI~ 283 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYG-----TSSGAGSYDVVVTCFFIDTAHNILEYIDTIY 283 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEec-----CcCCCCccceEEEEEEeechHHHHHHHHHHH
Confidence 10000 000000 011222210 00112369999876654 44557789999
Q ss_pred HhcCCCeEEEE
Q 026513 183 SYAKPGAVVGI 193 (237)
Q Consensus 183 ~~L~~gG~lii 193 (237)
..|+|||+.+=
T Consensus 284 ~iLk~GGvWiN 294 (369)
T KOG2798|consen 284 KILKPGGVWIN 294 (369)
T ss_pred HhccCCcEEEe
Confidence 99999999875
No 286
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.75 E-value=0.0093 Score=52.09 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=67.5
Q ss_pred hccCCCeEEEEcCc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513 67 LIKGGELFLDYGTG-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV 144 (237)
Q Consensus 67 ~~~~~~~vLDlG~G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~ 144 (237)
..+||++|+-+|+| .|..++.+++.-..+|+++|.+++-.+.|++.-. . .++.. |..
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA----d------~~i~~~~~~----------- 221 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA----D------HVINSSDSD----------- 221 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC----c------EEEEcCCch-----------
Confidence 36789999999998 2467777887423889999999999998886622 1 12221 110
Q ss_pred ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS 198 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~ 198 (237)
.+... .+.||+|+...+ ..-+....+.|++||.+++.++..
T Consensus 222 -------~~~~~--~~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 222 -------ALEAV--KEIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -------hhHHh--HhhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCCC
Confidence 00011 224999998886 234567788999999999987763
No 287
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.59 E-value=0.012 Score=47.20 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=26.6
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCC
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADID 102 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s 102 (237)
+++|.+|+|+-.|.|.++..++.. +...|++.-..
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~ 82 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA 82 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch
Confidence 578999999999999999999865 22355554443
No 288
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.51 E-value=0.0086 Score=49.55 Aligned_cols=105 Identities=17% Similarity=0.141 Sum_probs=69.1
Q ss_pred hccCCCeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513 67 LIKGGELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV 144 (237)
Q Consensus 67 ~~~~~~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 144 (237)
+++||.+||=+|+++|+..-..+.. +..-|+++|.|+..=...-..+++. + .+..+.-|+.-+.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--t----NiiPIiEDArhP~-------- 218 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--T----NIIPIIEDARHPA-------- 218 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--C----CceeeeccCCCch--------
Confidence 3689999999999999887666653 4566999999987644333222221 2 2555556654211
Q ss_pred ccccccccccCCCCCCceeEEEEeCChHHHHHH-HHHHhHhcCCCeEEEEe
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQL-ADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~-l~~~~~~L~~gG~liis 194 (237)
.-+.+ -+-.|+||++.+-..+..+ .-++...|++||++++|
T Consensus 219 -------KYRml--VgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 219 -------KYRML--VGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred -------heeee--eeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 00011 2358999998876555444 45678899999999996
No 289
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=96.37 E-value=0.034 Score=46.64 Aligned_cols=140 Identities=11% Similarity=0.055 Sum_probs=71.1
Q ss_pred CCCeEEEEcCcchHHHHHHHH----h--CCCeEEEEeCCH--------------------------HHHHHHHHHHHHcC
Q 026513 70 GGELFLDYGTGSGILGIAAIK----F--GAAMSVGADIDP--------------------------QAIKSAHQNAALNN 117 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~----~--~~~~v~~vD~s~--------------------------~~i~~a~~~~~~~~ 117 (237)
+| -++|.||-.|..++.++. . ..+++++.|.=+ ...+..++++...+
T Consensus 75 pG-divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 75 PG-DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp -S-EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred Ce-EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 44 699999999976655432 2 246788888611 12344445544444
Q ss_pred CCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCC-hHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 118 IGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL-LNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 118 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~-~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
+... ++.++.|.+.+. +... +..++-++.++.- +.+....+..+...|.|||++++.++
T Consensus 154 l~~~--~v~~vkG~F~dT-----------------Lp~~-p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDD--NVRFVKGWFPDT-----------------LPDA-PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSST--TEEEEES-HHHH-----------------CCC--TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcc--cEEEECCcchhh-----------------hccC-CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 4222 477888876531 1111 2456777766653 46667889999999999999999987
Q ss_pred CCCCHHHHHHHHhhccccceeeecCCEEEEEEEE
Q 026513 197 LSEQLPHIINRYSEFLEDILVSEMDDWTCVSGKK 230 (237)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 230 (237)
.......-.+.|............=+|..+..+|
T Consensus 214 ~~~gcr~AvdeF~~~~gi~~~l~~id~~~v~w~k 247 (248)
T PF05711_consen 214 GHPGCRKAVDEFRAEHGITDPLHPIDWTGVYWRK 247 (248)
T ss_dssp TTHHHHHHHHHHHHHTT--S--EE-SSS-EEEE-
T ss_pred CChHHHHHHHHHHHHcCCCCccEEecCceEEEec
Confidence 6633333333333322222233344454444443
No 290
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.25 E-value=0.063 Score=46.88 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=60.5
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.+|.+||-.|+|. |.+++.+++. |..+|+++|.+++.++.+++. |... -+.....+..
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~---vi~~~~~~~~------------- 227 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADK---LVNPQNDDLD------------- 227 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcE---EecCCcccHH-------------
Confidence 4688999999864 5666666654 666899999999888877642 3221 0111011110
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
. .....+.+|+|+..... ...+..+.+.|++||.+++.+.
T Consensus 228 -----~--~~~~~g~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 228 -----H--YKAEKGYFDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -----H--HhccCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 0 00112369999865432 2344667788999999998765
No 291
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.23 E-value=0.028 Score=49.11 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=60.4
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIK--FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV 144 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~--~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 144 (237)
.++|.+||-+|||. |.+++.+++ .|..+|+++|.++.-++.+++ .+. ...+ .+..
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~------~~~~-~~~~----------- 218 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE------TYLI-DDIP----------- 218 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc------eeeh-hhhh-----------
Confidence 46789999999875 556666554 356789999999988877764 111 1111 1110
Q ss_pred ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
....+|+|+-...-......+....++|+++|.+++.++.
T Consensus 219 -------------~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 219 -------------EDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred -------------hccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeec
Confidence 0124899885443211234567788899999999886653
No 292
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.17 E-value=0.0066 Score=55.18 Aligned_cols=95 Identities=17% Similarity=0.081 Sum_probs=60.8
Q ss_pred eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513 73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK 152 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (237)
.|+|..+|.|+|+.+|...+. ..+-.-|..-...-..+...|+-. +..|++++.
T Consensus 368 NVMDMnAg~GGFAAAL~~~~V---WVMNVVP~~~~ntL~vIydRGLIG-------~yhDWCE~f---------------- 421 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDDPV---WVMNVVPVSGPNTLPVIYDRGLIG-------VYHDWCEAF---------------- 421 (506)
T ss_pred eeeeecccccHHHHHhccCCc---eEEEecccCCCCcchhhhhcccch-------hccchhhcc----------------
Confidence 699999999999999987653 332222221111222233445432 233555311
Q ss_pred ccCCCCCCceeEEEEeCChHHH------HHHHHHHhHhcCCCeEEEEecc
Q 026513 153 IRGISQTEKYDVVIANILLNPL------LQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 153 ~~~~~~~~~fD~I~~n~~~~~~------~~~l~~~~~~L~~gG~liis~~ 196 (237)
... ..+||+|.++..+..+ ..++-++-+.|+|+|.++|.+.
T Consensus 422 --sTY-PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 422 --STY-PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred --CCC-CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 122 5799999999877554 4678889999999999999643
No 293
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.85 E-value=0.024 Score=51.39 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=80.1
Q ss_pred CCeEEEEcCcchHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
+..+|-+|-|+|.+...+. ..+..++++++++|.+++.|+++.....-. +..+...|...+. .++..
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~----r~~V~i~dGl~~~-----~~~~k--- 363 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD----RNKVHIADGLDFL-----QRTAK--- 363 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh----hhhhhHhhchHHH-----HHHhh---
Confidence 4578999999999998876 457788999999999999999886432211 1223333332110 11111
Q ss_pred cccccCCCCCCceeEEEEeCC------------hHHHHHHHHHHhHhcCCCeEEEEeccCCC--CHHHHHHHHhhc
Q 026513 150 SHKIRGISQTEKYDVVIANIL------------LNPLLQLADHIVSYAKPGAVVGISGILSE--QLPHIINRYSEF 211 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~------------~~~~~~~l~~~~~~L~~gG~liis~~~~~--~~~~~~~~~~~~ 211 (237)
.-..+..||+++.+.- .-....++..+...|.|.|.+++..+..+ .-.++...+.+.
T Consensus 364 -----~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~v 434 (482)
T KOG2352|consen 364 -----SQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKV 434 (482)
T ss_pred -----ccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhh
Confidence 0113568999987432 11224678889999999999999766433 345666666554
No 294
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.72 E-value=0.0067 Score=53.99 Aligned_cols=68 Identities=26% Similarity=0.369 Sum_probs=57.1
Q ss_pred hhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513 66 RLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS 136 (237)
Q Consensus 66 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~ 136 (237)
..+++|..|.|+.||.|-+++.++..+ ++|++-|.++++++..+.|+..|.+... .+.....|+..+.
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~--~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPS--AIEIFNMDAKDFL 312 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchh--heeeecccHHHHh
Confidence 357899999999999999999999886 7899999999999999999999988763 2556677665433
No 295
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.65 E-value=0.099 Score=40.98 Aligned_cols=112 Identities=15% Similarity=0.012 Sum_probs=68.6
Q ss_pred chhHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513 54 HATTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 133 (237)
Q Consensus 54 ~~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~ 133 (237)
..+...+.+.+.....++.+|+=+||=+-...+.-...+..+++..|++.+--.. +- + .|+.-|..
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~~-----~-~F~fyD~~ 74 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------GG-----D-EFVFYDYN 74 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------CC-----c-ceEECCCC
Confidence 3455556666655445678999999877665554423456789999999965321 11 1 12233333
Q ss_pred cccccccccccccccccccccCCCCCCceeEEEEeCCh---HHHHHHHHHHhHhcCCCeEEEEec
Q 026513 134 TASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL---NPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~---~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+. .+.... .++||+|+++||+ +...+....+..++++++.++++.
T Consensus 75 ~p~---------------~~~~~l-~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 75 EPE---------------ELPEEL-KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred Chh---------------hhhhhc-CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 211 111111 5699999999997 333455666777778988888863
No 296
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.64 E-value=0.01 Score=42.94 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=26.7
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCH
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDP 103 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~ 103 (237)
.....|+|||+|.+.-.|.+.|.. -.|+|...
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYP-GWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCC-cccccccc
Confidence 446999999999999999988766 67888755
No 297
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.57 E-value=0.071 Score=47.43 Aligned_cols=45 Identities=24% Similarity=0.491 Sum_probs=36.5
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHH
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQN 112 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~ 112 (237)
+.+|.+||..|||. |..+..+++. |..+++++|.++...+.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 46788999999987 7787777765 555799999999988887764
No 298
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.56 E-value=0.038 Score=40.89 Aligned_cols=92 Identities=18% Similarity=0.269 Sum_probs=60.2
Q ss_pred cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCC
Q 026513 80 GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQT 159 (237)
Q Consensus 80 G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (237)
|.|..++.+++.-..+|+++|.++..++.+++. |... -+.....|+.+ .+......
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga~~---~~~~~~~~~~~-----------------~i~~~~~~ 56 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GADH---VIDYSDDDFVE-----------------QIRELTGG 56 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TESE---EEETTTSSHHH-----------------HHHHHTTT
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cccc---ccccccccccc-----------------cccccccc
Confidence 568888888875338899999999988887653 3221 01111222110 11223334
Q ss_pred CceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513 160 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS 198 (237)
Q Consensus 160 ~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~ 198 (237)
..+|+|+-.... ...++....+++++|.+++.+...
T Consensus 57 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGS---GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSS---HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCc---HHHHHHHHHHhccCCEEEEEEccC
Confidence 589999976642 346677888999999999987765
No 299
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.51 E-value=0.1 Score=44.86 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=57.9
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.++.++|-+|||. |.+++.+++ .|...|+++|.++..++.|+.. .. + |..+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~------i-----~~~~------------ 195 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV------L-----DPEK------------ 195 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc------c-----Chhh------------
Confidence 4577899999875 677777775 4777788899988776655431 10 0 1000
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
. ....+|+|+-..... ..++.+.++|+++|.+++.+..
T Consensus 196 --------~--~~~g~Dvvid~~G~~---~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 196 --------D--PRRDYRAIYDASGDP---SLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred --------c--cCCCCCEEEECCCCH---HHHHHHHHhhhcCcEEEEEeec
Confidence 0 134689998655322 2456677889999999986653
No 300
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=95.51 E-value=0.016 Score=49.77 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=54.2
Q ss_pred EEEEcCcchHH-HHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513 74 FLDYGTGSGIL-GIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK 152 (237)
Q Consensus 74 vLDlG~G~G~~-~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (237)
-+|||+|.-.+ .+.-+....-..+++|+++...+.|+.|+..++++. .+.+++.+.-+..+.
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss---~ikvV~~~~~ktll~-------------- 168 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSS---LIKVVKVEPQKTLLM-------------- 168 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccccccc---ceeeEEecchhhcch--------------
Confidence 58999987644 333334434668899999999999999999999876 455555543322211
Q ss_pred ccCCC--CCCceeEEEEeCCh
Q 026513 153 IRGIS--QTEKYDVVIANILL 171 (237)
Q Consensus 153 ~~~~~--~~~~fD~I~~n~~~ 171 (237)
+.+. ++..||+..||||+
T Consensus 169 -d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 169 -DALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred -hhhccCccceeeEEecCCch
Confidence 1221 24569999999994
No 301
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.34 E-value=0.03 Score=48.99 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=71.8
Q ss_pred CeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccc
Q 026513 72 ELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSH 151 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 151 (237)
.+++|+.||.|.+.+.+...|..-+.++|+++.+++..+.|... ..++..|..+...
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~-------------- 60 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDG-------------- 60 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcCh--------------
Confidence 47999999999999999888888899999999999988877553 1233444432110
Q ss_pred cccCCCCCCceeEEEEeCChHHHH----------------HHHHHHhHhcCCCeEEEEe---ccCCC---CHHHHHHHHh
Q 026513 152 KIRGISQTEKYDVVIANILLNPLL----------------QLADHIVSYAKPGAVVGIS---GILSE---QLPHIINRYS 209 (237)
Q Consensus 152 ~~~~~~~~~~fD~I~~n~~~~~~~----------------~~l~~~~~~L~~gG~liis---~~~~~---~~~~~~~~~~ 209 (237)
..+. ...+|+++..+|...+. --+.++...++| -.+++- +++.. ....+...+.
T Consensus 61 --~~~~-~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~ 136 (328)
T COG0270 61 --EALR-KSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELE 136 (328)
T ss_pred --hhcc-ccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHH
Confidence 0111 11799999999843221 114556667788 455543 33343 4455555555
Q ss_pred h
Q 026513 210 E 210 (237)
Q Consensus 210 ~ 210 (237)
+
T Consensus 137 ~ 137 (328)
T COG0270 137 E 137 (328)
T ss_pred H
Confidence 4
No 302
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.32 E-value=0.38 Score=37.86 Aligned_cols=96 Identities=15% Similarity=0.173 Sum_probs=58.1
Q ss_pred EcCcchHHHHHHHHh-C-CCeEEEEeCCH--HHHHHH---HHHHHH---cCCCCCcceEEeccCcccccccccccccccc
Q 026513 77 YGTGSGILGIAAIKF-G-AAMSVGADIDP--QAIKSA---HQNAAL---NNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 77 lG~G~G~~~~~la~~-~-~~~v~~vD~s~--~~i~~a---~~~~~~---~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+|=|+=.|+..+++. + ...++++-++. ...+.. ..++.. .|+. + ....|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~-----V-~~~VDat~------------ 64 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVT-----V-LHGVDATK------------ 64 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCc-----c-ccCCCCCc------------
Confidence 555666788888764 4 55666655544 333332 244332 2321 2 12345542
Q ss_pred ccccccccCCC--CCCceeEEEEeCCh----------------HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGIS--QTEKYDVVIANILL----------------NPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~--~~~~fD~I~~n~~~----------------~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
+.... ...+||.|+.|.|- ..+..++..+..+|+++|.+.|+-.
T Consensus 65 ------l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 65 ------LHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred ------ccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 11222 35789999999983 2345789999999999999999733
No 303
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.30 E-value=0.14 Score=43.90 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=57.8
Q ss_pred CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.|+.||--|.|+| .++..+|++|+ +++..|++++..+...+.++..| +++....|..+.. .+..+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g------~~~~y~cdis~~e---ei~~~a~ 106 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG------EAKAYTCDISDRE---EIYRLAK 106 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC------ceeEEEecCCCHH---HHHHHHH
Confidence 4789999999998 45666778876 69999999999999888888775 3667777775321 1111111
Q ss_pred ccccccccCCCCCCceeEEEEeCC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~ 170 (237)
.. -..-+..|+++.|..
T Consensus 107 ~V-------k~e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 107 KV-------KKEVGDVDILVNNAG 123 (300)
T ss_pred HH-------HHhcCCceEEEeccc
Confidence 10 011368999999885
No 304
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.29 E-value=0.14 Score=47.46 Aligned_cols=116 Identities=18% Similarity=0.259 Sum_probs=63.8
Q ss_pred CCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccc-cccccc
Q 026513 70 GGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNER-VDGVVE 146 (237)
Q Consensus 70 ~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~ 146 (237)
++.+|+-+|+|. |..++..++. |+ .|+++|.++..++.+++. |... +.+.....+... +. ...+-+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA~~--v~i~~~e~~~~~----~gya~~~s~ 232 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GAEF--LELDFEEEGGSG----DGYAKVMSE 232 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCeE--EEeccccccccc----cchhhhcch
Confidence 688999999997 7777777764 65 799999999998888752 3221 001110100000 00 000000
Q ss_pred ccccccccCCCC-CCceeEEEEeCChHH--HHHH-HHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQ-TEKYDVVIANILLNP--LLQL-ADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~-~~~fD~I~~n~~~~~--~~~~-l~~~~~~L~~gG~liis~~ 196 (237)
.+.+.....+.. ...+|+||....... ...+ .+.+.+.++|||.++..+.
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 000000001111 146999998554322 1233 4889999999999887543
No 305
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.28 E-value=0.032 Score=48.49 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=35.9
Q ss_pred EEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513 74 FLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA 113 (237)
Q Consensus 74 vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~ 113 (237)
|+|+.||.|.+...+.+.|...+.++|+++.+++..+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 6899999999999998888887889999999999888775
No 306
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.22 E-value=0.14 Score=45.03 Aligned_cols=103 Identities=20% Similarity=0.229 Sum_probs=61.4
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.+|.+||-.|+|. |.+++.+++. |..+|+++|.++...+.+++. +... -+.....+..+
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~~---~i~~~~~~~~~----------- 235 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GATH---TVNSSGTDPVE----------- 235 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCce---EEcCCCcCHHH-----------
Confidence 56789999998864 5666666664 656799999999888777542 3221 01111111110
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.+........+|+|+-..... ..+......++++|++++.+..
T Consensus 236 ------~i~~~~~~~g~d~vid~~g~~---~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 236 ------AIRALTGGFGADVVIDAVGRP---ETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred ------HHHHHhCCCCCCEEEECCCCH---HHHHHHHHHhccCCEEEEECCC
Confidence 001112234689988544221 2345567789999999987654
No 307
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.17 E-value=0.079 Score=46.35 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=59.5
Q ss_pred CCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.+++||+|.|+|+-..++... + ...++.++.|+..-+..... ..+-. ....|+....+-.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl-~~nv~--------t~~td~r~s~vt~--------- 175 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTL-AENVS--------TEKTDWRASDVTE--------- 175 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHH-Hhhcc--------cccCCCCCCccch---------
Confidence 457999999999876665532 2 35577888888554444333 32211 1112222211110
Q ss_pred ccccccCCCCCCceeEEEEeC-Ch-----HHHHHHHHHHhHhcCCCeEEEEeccCCC
Q 026513 149 SSHKIRGISQTEKYDVVIANI-LL-----NPLLQLADHIVSYAKPGAVVGISGILSE 199 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~-~~-----~~~~~~l~~~~~~L~~gG~liis~~~~~ 199 (237)
+...+.....|++++..- .+ ..+...+..+..+++|||.|+|..--+.
T Consensus 176 ---dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 176 ---DRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred ---hccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 011233345677776522 11 1122367888899999999999644333
No 308
>PRK11524 putative methyltransferase; Provisional
Probab=95.16 E-value=0.03 Score=47.92 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=30.8
Q ss_pred CCCceeEEEEeCChHH-------------------HHHHHHHHhHhcCCCeEEEEec
Q 026513 158 QTEKYDVVIANILLNP-------------------LLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 158 ~~~~fD~I~~n~~~~~-------------------~~~~l~~~~~~L~~gG~liis~ 195 (237)
++++||+|++|||+.. +..++..+.++|+|||.+++.+
T Consensus 24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3678999999999631 2357899999999999999863
No 309
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.08 E-value=0.033 Score=40.49 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=27.3
Q ss_pred ceeEEEEeCCh---------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513 161 KYDVVIANILL---------NPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 161 ~fD~I~~n~~~---------~~~~~~l~~~~~~L~~gG~liis 194 (237)
+||+|+|-.+. ..+..+++++..+|+|||++++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 59999998874 23457899999999999999994
No 310
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.87 E-value=0.16 Score=46.55 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=38.1
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA 113 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~ 113 (237)
..+++|+.||.|.+...+-..|...|.++|+++.+.+..+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 4589999999999999998888888899999999988888775
No 311
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=94.82 E-value=0.066 Score=49.95 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=75.4
Q ss_pred hccCCCeEEEEcCcchHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513 67 LIKGGELFLDYGTGSGILGIAAIKF-G-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV 144 (237)
Q Consensus 67 ~~~~~~~vLDlG~G~G~~~~~la~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 144 (237)
++.++..|||+||-+|.....+++. | ..-|+|+|+-|-- .+.++...++-+..|.+...
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~-------- 101 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSK-------- 101 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHH--------
Confidence 3678899999999999998888864 4 3458899997721 23332111222222221110
Q ss_pred ccccccccccCCCCCCceeEEEEeCCh----HHH----------HHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILL----NPL----------LQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE 210 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~----~~~----------~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~ 210 (237)
++.....-+.|+|+.+..- .+. ...+..+...|+.||.++.-.+.+++-..++..+.+
T Consensus 102 --------l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~q 173 (780)
T KOG1098|consen 102 --------LRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQ 173 (780)
T ss_pred --------HHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHH
Confidence 0011112356999886641 111 133677778999999977777888887788877776
Q ss_pred cccccee
Q 026513 211 FLEDILV 217 (237)
Q Consensus 211 ~~~~~~~ 217 (237)
-|.-++.
T Consensus 174 Lf~kv~~ 180 (780)
T KOG1098|consen 174 LFKKVEA 180 (780)
T ss_pred HHHHHHh
Confidence 5544433
No 312
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.80 E-value=0.061 Score=46.32 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=49.8
Q ss_pred eEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccccc
Q 026513 73 LFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHK 152 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (237)
+++|+.||.|.+...+.+.|...+.++|+++.+++..+.|.. ....+|+.+....
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~-------------- 56 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPS-------------- 56 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHH--------------
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccc--------------
Confidence 699999999999999999998889999999999999988865 2345666532111
Q ss_pred ccCCCCCCceeEEEEeCC
Q 026513 153 IRGISQTEKYDVVIANIL 170 (237)
Q Consensus 153 ~~~~~~~~~fD~I~~n~~ 170 (237)
.+ +. .+|+++..+|
T Consensus 57 --~l-~~-~~D~l~ggpP 70 (335)
T PF00145_consen 57 --DL-PK-DVDLLIGGPP 70 (335)
T ss_dssp --HH-HH-T-SEEEEE--
T ss_pred --cc-cc-cceEEEeccC
Confidence 11 12 5999999988
No 313
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.79 E-value=0.22 Score=44.89 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=57.6
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
..+|++|+-+|+|. |......++ .|. +|+.+|.++...+.|+. .|.. + . +..
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~~-----~--~--~~~------------ 252 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGYE-----V--M--TME------------ 252 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCCE-----E--c--cHH------------
Confidence 45799999999997 555555554 455 79999999987766653 2321 1 1 100
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHH-HhHhcCCCeEEEEeccC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADH-IVSYAKPGAVVGISGIL 197 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~-~~~~L~~gG~liis~~~ 197 (237)
.. -..+|+|+..... ...+.. ....+++||.++..+..
T Consensus 253 ---------e~--v~~aDVVI~atG~---~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 253 ---------EA--VKEGDIFVTTTGN---KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ---------HH--HcCCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 00 1357999875532 234443 47889999999887653
No 314
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.74 E-value=0.45 Score=41.35 Aligned_cols=93 Identities=17% Similarity=0.062 Sum_probs=57.9
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+++|.+||-.|+|. |.+++.+++....++++++.++...+.+++ .|... + +..+ +
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~~----v--i~~~--~------------ 218 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAAS----A--GGAY--D------------ 218 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCce----e--cccc--c------------
Confidence 56789999999764 455556665433469999999988776654 34321 1 1100 0
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
. ..+.+|+++..... ...+....+.|+++|.+++.+..
T Consensus 219 --------~--~~~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~~ 256 (329)
T TIGR02822 219 --------T--PPEPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGIH 256 (329)
T ss_pred --------c--CcccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEecc
Confidence 0 02357876543322 23567778899999999987653
No 315
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.71 E-value=0.19 Score=44.33 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=60.7
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+++|.+||-.|+|. |.++..+++. |..+|+++|.++..++.+++. +... -+.....+..
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~---~i~~~~~~~~------------ 249 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GATA---TVNAGDPNAV------------ 249 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCce---EeCCCchhHH------------
Confidence 56788999999764 5566666654 665799999999888877642 3321 0111111111
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
+ .+.... .+.+|+|+-.... ...+....+.|+++|.+++.+..
T Consensus 250 ~-----~i~~~~-~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 250 E-----QVRELT-GGGVDYAFEMAGS---VPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred H-----HHHHHh-CCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEccC
Confidence 0 011111 2368999864422 13455667789999999876554
No 316
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.70 E-value=0.031 Score=47.36 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=46.9
Q ss_pred cccCCCCchhHHHHHHHHHhh-----ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHH
Q 026513 47 LAFGSGEHATTKLCLLLLRRL-----IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIK 107 (237)
Q Consensus 47 ~~f~~g~~~~~~~~~~~l~~~-----~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~ 107 (237)
+.-|.-.+..+-.++..+.+. .-.|++|||+|||+|..++.+...+...+...|++...++
T Consensus 88 yEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 88 YEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred eecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 333444466666666666532 3468999999999999999999888888999999998874
No 317
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.47 E-value=0.31 Score=41.27 Aligned_cols=100 Identities=21% Similarity=0.208 Sum_probs=59.8
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.++.+||-.|+|+ |.+++.+++. |..+|+++|.++..++.+++. +... ++..+... +
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~------~i~~~~~~--------~--- 177 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GATA------LAEPEVLA--------E--- 177 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCcE------ecCchhhH--------H---
Confidence 4788999998864 5555666654 666699999999887776652 3221 11110000 0
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.+........+|+++-...- ...++.+...++++|.+++.+..
T Consensus 178 -----~~~~~~~~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 178 -----RQGGLQNGRGVDVALEFSGA---TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred -----HHHHHhCCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence 00011123468999864422 23456677889999999987654
No 318
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.47 E-value=0.075 Score=41.42 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=59.0
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHH-HHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSA-HQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a-~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
|++++-+|+..-.+-..+...|+.+|..+|.++--++.- +. .++ .+...|... ++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~d-----r~s------si~p~df~~--------~~~---- 58 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRD-----RLS------SILPVDFAK--------NWQ---- 58 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccc-----ccc------cccHHHHHH--------HHH----
Confidence 678889998877777777788999999999987332211 11 111 111222210 010
Q ss_pred cccccCCCCCCceeEEEEeCChHHH------------H--HHHHHHhHhcCCCeEEEEec
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPL------------L--QLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~------------~--~~l~~~~~~L~~gG~liis~ 195 (237)
.. .++||++.|...+++. . +-+.++..+||+||.|+++-
T Consensus 59 -----~y--~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 59 -----KY--AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred -----Hh--hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 11 4689999886654332 1 33677889999999999973
No 319
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.24 E-value=0.38 Score=42.11 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=58.2
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeC---CHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIKFGAAMSVGADI---DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV 144 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~---s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 144 (237)
.+|.+||-.|+|. |.++..+++....+|++++. ++..++.+++ .+... +.....+..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~~----v~~~~~~~~----------- 231 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGATY----VNSSKTPVA----------- 231 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCEE----ecCCccchh-----------
Confidence 5788999999875 66777777653336999987 5666665543 23220 111001100
Q ss_pred ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.......+|+|+-..... ..+....+.|+++|.+++.+..
T Consensus 232 ----------~~~~~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 232 ----------EVKLVGEFDLIIEATGVP---PLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ----------hhhhcCCCCEEEECcCCH---HHHHHHHHHccCCcEEEEEecC
Confidence 000124689988755322 2456778889999999876554
No 320
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.17 E-value=0.23 Score=40.79 Aligned_cols=127 Identities=12% Similarity=0.099 Sum_probs=72.5
Q ss_pred CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
..-|++||.|.|+++..+...+..+...+++++..+.-.+-....... +..+..+|+..+...+... +
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~-----~~~IHh~D~LR~~I~~~~~-------~ 118 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPG-----KLRIHHGDVLRFKIEKAFS-------E 118 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCc-----ceEEeccccceehHHhhcc-------h
Confidence 456999999999999999999899999999999998876655553332 3556677776543332211 1
Q ss_pred ccccCCCCCCceeEEEEeCChHHHHHH-HHHHhHh-cCCCeEEEEe-ccCCCCHHHHHHHHh
Q 026513 151 HKIRGISQTEKYDVVIANILLNPLLQL-ADHIVSY-AKPGAVVGIS-GILSEQLPHIINRYS 209 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~~~~~~~~-l~~~~~~-L~~gG~liis-~~~~~~~~~~~~~~~ 209 (237)
...+.+..+.+-=-|+-|.|+.....+ ++.+..+ .+.|-+.|.. +..-+.-.++...++
T Consensus 119 ~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~EVAeRlC 180 (326)
T KOG0821|consen 119 SLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLC 180 (326)
T ss_pred hhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHHHHHHhc
Confidence 122233333233345557776443332 2222222 2445555543 223333344444443
No 321
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.14 E-value=0.28 Score=45.41 Aligned_cols=120 Identities=21% Similarity=0.230 Sum_probs=73.8
Q ss_pred chhHHHHHHHHHhhc----cCCCeEEEEcCcchHHHHHHHHh---C--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcce
Q 026513 54 HATTKLCLLLLRRLI----KGGELFLDYGTGSGILGIAAIKF---G--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMK 124 (237)
Q Consensus 54 ~~~~~~~~~~l~~~~----~~~~~vLDlG~G~G~~~~~la~~---~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~ 124 (237)
.-+.+.+...+.... .++..+.|..||+|.+.....+. + ...++|.+..+.+...++.|....+.....
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t-- 274 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYAN-- 274 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccc--
Confidence 344444444443322 24568999999999988764431 2 245899999999999999997766653211
Q ss_pred EEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCChHHH----------------------------HH
Q 026513 125 LHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL----------------------------LQ 176 (237)
Q Consensus 125 v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~----------------------------~~ 176 (237)
.....+|-...+ ......+||+|++|||+... ..
T Consensus 275 ~~~~~~dtl~~~------------------d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~a 336 (501)
T TIGR00497 275 FNIINADTLTTK------------------EWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLA 336 (501)
T ss_pred cCcccCCcCCCc------------------cccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHH
Confidence 122233322100 11123569999999974210 13
Q ss_pred HHHHHhHhcCCCeEEEE
Q 026513 177 LADHIVSYAKPGAVVGI 193 (237)
Q Consensus 177 ~l~~~~~~L~~gG~lii 193 (237)
++..+...|++||...+
T Consensus 337 fi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 337 FVLHALYVLGQEGTAAI 353 (501)
T ss_pred HHHHHHHhcCCCCeEEE
Confidence 46778889999997544
No 322
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.02 E-value=0.41 Score=41.47 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=59.2
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.+|.+||-.|+|. |.++..+++. |..+|++++.++...+.+++. +... -+.....+ .+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~~---~i~~~~~~-~~----------- 221 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GADF---VINSGQDD-VQ----------- 221 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCE---EEcCCcch-HH-----------
Confidence 46788999998764 4555556654 555599999999887776542 3321 01110001 00
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.+........+|+|+-..... ..+....+.|+++|.+++-+..
T Consensus 222 ------~~~~~~~~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 222 ------EIRELTSGAGADVAIECSGNT---AARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred ------HHHHHhCCCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEEcCC
Confidence 011122234799998654322 2345567788999999876543
No 323
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.96 E-value=0.83 Score=37.34 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=65.7
Q ss_pred CeEEEEcCcch----HHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 72 ELFLDYGTGSG----ILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 72 ~~vLDlG~G~G----~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.+++..|+.| ++++..| ++...++++|-.+++.+...++.+...++++ .++|+.++..+.
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~---~vEfvvg~~~e~----------- 108 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSD---VVEFVVGEAPEE----------- 108 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccc---cceEEecCCHHH-----------
Confidence 46888866643 3344333 4556678999999988888888888777764 357777774321
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHH-HHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~-~~l~~~~~~L~~gG~liis~~ 196 (237)
.+..+ ...|+++.+.-...+. ++++.+. +.|.|-+++...
T Consensus 109 -----~~~~~---~~iDF~vVDc~~~d~~~~vl~~~~--~~~~GaVVV~~N 149 (218)
T PF07279_consen 109 -----VMPGL---KGIDFVVVDCKREDFAARVLRAAK--LSPRGAVVVCYN 149 (218)
T ss_pred -----HHhhc---cCCCEEEEeCCchhHHHHHHHHhc--cCCCceEEEEec
Confidence 11122 4689999888666555 6666543 566777777543
No 324
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.73 E-value=0.54 Score=34.00 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=56.0
Q ss_pred CcchHHHHHHHH---hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccC
Q 026513 79 TGSGILGIAAIK---FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRG 155 (237)
Q Consensus 79 ~G~G~~~~~la~---~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 155 (237)
||.|.++..+++ .+...|+.+|.+++.++.+++. + +.++.+|..+...- ..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~-------~~~i~gd~~~~~~l---------------~~ 57 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G-------VEVIYGDATDPEVL---------------ER 57 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T-------SEEEES-TTSHHHH---------------HH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c-------cccccccchhhhHH---------------hh
Confidence 455666665553 3455799999999998777643 2 44777887753211 11
Q ss_pred CCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 156 ISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 156 ~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
. .-.++|.+++...-....-.+....+.+.|...++..
T Consensus 58 a-~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 58 A-GIEKADAVVILTDDDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp T-TGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred c-CccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 1 1357999998776555444555566777888888774
No 325
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.72 E-value=0.59 Score=40.10 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=61.2
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.++.+||..|+|. |..++.+++.-..+|++++.++...+.+++ .++.. +.....+... +
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~~----~~~~~~~~~~--------~--- 223 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGADE----VLNSLDDSPK--------D--- 223 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCCE----EEcCCCcCHH--------H---
Confidence 46788899988763 677777776534559999999988777654 24321 1111111000 0
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+ .......+|+++..... ...+..+.+.|+++|.++..+.
T Consensus 224 -----~~-~~~~~~~~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 224 -----KK-AAGLGGGFDVIFDFVGT---QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred -----HH-HHhcCCCceEEEECCCC---HHHHHHHHHHhhcCCEEEEECC
Confidence 00 11224579999865422 2355677889999999987644
No 326
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=93.66 E-value=0.53 Score=40.97 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=58.9
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
..+|.+||-.|+|+ |.+++.+++. |...|++++.++...+.+++ .+... -+.....+ ..
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~---~i~~~~~~-~~----------- 218 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQ---TFNSREMS-AP----------- 218 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCce---EecCcccC-HH-----------
Confidence 45788999998865 5555666654 66668999999988776643 23221 01100001 00
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS 198 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~ 198 (237)
.+........+|.++.+..-. ...+....+.|++||.+++.++..
T Consensus 219 ------~~~~~~~~~~~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~~~ 263 (347)
T PRK10309 219 ------QIQSVLRELRFDQLILETAGV--PQTVELAIEIAGPRAQLALVGTLH 263 (347)
T ss_pred ------HHHHHhcCCCCCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEccCC
Confidence 001111234677333333222 235566778899999999876643
No 327
>PRK13699 putative methylase; Provisional
Probab=93.57 E-value=0.23 Score=41.16 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=30.4
Q ss_pred CCCceeEEEEeCChH------------------HHHHHHHHHhHhcCCCeEEEEe
Q 026513 158 QTEKYDVVIANILLN------------------PLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 158 ~~~~fD~I~~n~~~~------------------~~~~~l~~~~~~L~~gG~liis 194 (237)
+++++|+|+.+||+. .+...+.++.++|||||.+++-
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 478999999999973 2346788999999999999874
No 328
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.42 E-value=0.58 Score=44.88 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=27.4
Q ss_pred CceeEEEEeCCh------HHHHHHHHHHhHhcCCCeEEEEe
Q 026513 160 EKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 160 ~~fD~I~~n~~~------~~~~~~l~~~~~~L~~gG~liis 194 (237)
..+|+++.++.- -+..+++..+.++++|||.+..-
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 469999998632 23357899999999999999863
No 329
>PLN02740 Alcohol dehydrogenase-like
Probab=93.25 E-value=0.59 Score=41.45 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=59.8
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc--Cccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP--DRTFTASMNERVDG 143 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~ 143 (237)
+++|.+||-.|+|. |..++.+++. |..+|+++|.++..++.+++ .+... -+.... .++.+
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~---~i~~~~~~~~~~~--------- 259 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITD---FINPKDSDKPVHE--------- 259 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcE---EEecccccchHHH---------
Confidence 57789999999864 5566666654 66579999999988887754 23221 011100 00100
Q ss_pred cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEeccC
Q 026513 144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL 197 (237)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~~ 197 (237)
.+.... .+.+|+|+-...-. ..+......+++| |.+++.+..
T Consensus 260 --------~v~~~~-~~g~dvvid~~G~~---~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 260 --------RIREMT-GGGVDYSFECAGNV---EVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred --------HHHHHh-CCCCCEEEECCCCh---HHHHHHHHhhhcCCCEEEEEccC
Confidence 001111 12699998655321 3445566678886 888876654
No 330
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.95 E-value=0.81 Score=39.86 Aligned_cols=104 Identities=17% Similarity=0.268 Sum_probs=61.2
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
++++.+||-.|+|. |..++.+++. |...++++|.++...+.+++ .+... -+.....+...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~---~v~~~~~~~~~----------- 225 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATD---IVDYKNGDVVE----------- 225 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCce---EecCCCCCHHH-----------
Confidence 56788999998763 5555566654 66679999999987777664 23321 01111111110
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS 198 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~ 198 (237)
.+........+|+++...... ..+..+.+.|+++|.++..+...
T Consensus 226 ------~i~~~~~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~g~~~ 269 (351)
T cd08285 226 ------QILKLTGGKGVDAVIIAGGGQ---DTFEQALKVLKPGGTISNVNYYG 269 (351)
T ss_pred ------HHHHHhCCCCCcEEEECCCCH---HHHHHHHHHhhcCCEEEEecccC
Confidence 011112234699998654321 34567778899999998755543
No 331
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.83 E-value=5.2 Score=33.69 Aligned_cols=108 Identities=9% Similarity=0.074 Sum_probs=67.1
Q ss_pred cCCCeEEEEcCcchHHHHHHHH----hC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccc
Q 026513 69 KGGELFLDYGTGSGILGIAAIK----FG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDG 143 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~----~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 143 (237)
..+...+|+|+|+..-+..+.. .+ ..+++.+|+|...++...+.+...-. .+.+.-+++|...+.
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~---~l~v~~l~~~~~~~L------- 146 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP---GLEVNALCGDYELAL------- 146 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC---CCeEeehhhhHHHHH-------
Confidence 3467899999999977766543 32 36799999999998864444332221 124666777765321
Q ss_pred cccccccccccCCCCCCceeEE-EEeC-----ChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 144 VVEDLSSHKIRGISQTEKYDVV-IANI-----LLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~fD~I-~~n~-----~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
..+. ...--++ +... .-..-..++..+...++||-++++..-+
T Consensus 147 ----------a~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 147 ----------AELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred ----------hccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 1222 2222222 2222 2233456889999999999999996433
No 332
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=92.73 E-value=0.34 Score=44.64 Aligned_cols=130 Identities=14% Similarity=0.187 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhhccC-----CCeEEEEcCcchHHHHHHH---HhC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceE
Q 026513 56 TTKLCLLLLRRLIKG-----GELFLDYGTGSGILGIAAI---KFG--AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKL 125 (237)
Q Consensus 56 ~~~~~~~~l~~~~~~-----~~~vLDlG~G~G~~~~~la---~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v 125 (237)
..+.+..+|..+.+. -.++.-+|.|.|-++.+.. ... --+++++|-+|.++-..+. .......+ ++
T Consensus 348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~---~V 423 (649)
T KOG0822|consen 348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDN---RV 423 (649)
T ss_pred HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcC---ee
Confidence 444555555443222 2368899999997765433 222 2358899999999876654 33334444 58
Q ss_pred EeccCccccccccccccccccccccccccCCCC-CCceeEEEEeCC--h---HHHHHHHHHHhHhcCCCeEEEEecc---
Q 026513 126 HLVPDRTFTASMNERVDGVVEDLSSHKIRGISQ-TEKYDVVIANIL--L---NPLLQLADHIVSYAKPGAVVGISGI--- 196 (237)
Q Consensus 126 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~n~~--~---~~~~~~l~~~~~~L~~gG~liis~~--- 196 (237)
.++..|++ .+.+ .++.|++++-.. + +...+.++-+.+.|||+|+-|=+.+
T Consensus 424 tii~~DMR---------------------~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSy 482 (649)
T KOG0822|consen 424 TIISSDMR---------------------KWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSY 482 (649)
T ss_pred EEEecccc---------------------ccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccchhhhh
Confidence 88888876 4433 378999986331 1 2235778889999999988765422
Q ss_pred -CCCCHHHHHHHHhh
Q 026513 197 -LSEQLPHIINRYSE 210 (237)
Q Consensus 197 -~~~~~~~~~~~~~~ 210 (237)
..-.+..+.+.+++
T Consensus 483 i~PImS~~l~q~v~a 497 (649)
T KOG0822|consen 483 IAPIMSPKLYQEVKA 497 (649)
T ss_pred hcccccHHHHHHHHh
Confidence 22234455555553
No 333
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.55 E-value=0.67 Score=40.86 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=35.6
Q ss_pred CCeEEEEcCcchHHHHHHHHh---------CCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 71 GELFLDYGTGSGILGIAAIKF---------GAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la~~---------~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
...++|+|.|.|.++.-+.+. ...++..+|+|++..+.-++++..-
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 457999999999988755431 2568999999999888777776643
No 334
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.50 E-value=0.89 Score=37.37 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=59.8
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.++.+||..|+|+ |.....+++....++++++.++...+.+++. +... -+.....+.. .
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~------------~- 192 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GADH---VIDYKEEDLE------------E- 192 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCce---eccCCcCCHH------------H-
Confidence 6788999999986 5566666655447799999998777666432 2211 0110001100 0
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+. ....+.+|+++.+.... ..+..+.+.|+++|.++..+.
T Consensus 193 ----~~~-~~~~~~~d~vi~~~~~~---~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 193 ----ELR-LTGGGGADVVIDAVGGP---ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ----HHH-HhcCCCCCEEEECCCCH---HHHHHHHHhcccCCEEEEEcc
Confidence 000 11245799999765431 344566778899999987543
No 335
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.37 E-value=0.76 Score=41.27 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=34.4
Q ss_pred ccCCCeEEEEc-Cc-chHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHH
Q 026513 68 IKGGELFLDYG-TG-SGILGIAAIKF---GAAMSVGADIDPQAIKSAHQN 112 (237)
Q Consensus 68 ~~~~~~vLDlG-~G-~G~~~~~la~~---~~~~v~~vD~s~~~i~~a~~~ 112 (237)
+++|.+|+-+| +| .|..++.+++. |..+|+++|.++..++.+++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 46788899887 45 47777777764 345799999999999888764
No 336
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.30 E-value=1.5 Score=32.75 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=51.0
Q ss_pred CCeEEEEcCcch-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 71 GELFLDYGTGSG-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 71 ~~~vLDlG~G~G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
..+++|+|-|.= ..+..|...| ..|+++|+.+. ++. .| +.++..|++++.+.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~-------~a~-~g-------~~~v~DDif~P~l~----------- 66 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPR-------KAP-EG-------VNFVVDDIFNPNLE----------- 66 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S------------S-------TTEE---SSS--HH-----------
T ss_pred CCcEEEECcCCCHHHHHHHHHcC-CcEEEEECccc-------ccc-cC-------cceeeecccCCCHH-----------
Confidence 349999999975 4556677777 56999999997 222 33 44778888864321
Q ss_pred cccccCCCCCCceeEEEE-eCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCH
Q 026513 150 SHKIRGISQTEKYDVVIA-NILLNPLLQLADHIVSYAKPGAVVGISGILSEQL 201 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~-n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~ 201 (237)
. =...|+|++ +||.+....+++-.. +-|.-+++..+..+..
T Consensus 67 -----i---Y~~a~lIYSiRPP~El~~~il~lA~---~v~adlii~pL~~e~~ 108 (127)
T PF03686_consen 67 -----I---YEGADLIYSIRPPPELQPPILELAK---KVGADLIIRPLGGESP 108 (127)
T ss_dssp -----H---HTTEEEEEEES--TTSHHHHHHHHH---HHT-EEEEE-BTTB--
T ss_pred -----H---hcCCcEEEEeCCChHHhHHHHHHHH---HhCCCEEEECCCCCCC
Confidence 1 146899998 787776666655544 4477788876665544
No 337
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.20 E-value=0.54 Score=41.67 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=34.9
Q ss_pred CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513 70 GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQ 111 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~ 111 (237)
+-..|+|+|.|.|.++..++-...-.|.+||.|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 456899999999999999986545669999999888777665
No 338
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=92.17 E-value=7.7 Score=34.71 Aligned_cols=110 Identities=14% Similarity=0.060 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc
Q 026513 57 TKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS 136 (237)
Q Consensus 57 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~ 136 (237)
...++..+......+ +|+-++=.-|.++..++..+.. .+=-|--.-...+.|+..|++.... +.+....
T Consensus 32 de~ll~~~~~~~~~~-~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~n~~~~~~--~~~~~~~----- 100 (378)
T PRK15001 32 DEYLLQQLDDTEIRG-PVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRLNGIDESS--VKFLDST----- 100 (378)
T ss_pred HHHHHHHHhhcccCC-CEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHHcCCCccc--ceeeccc-----
Confidence 345555554432223 7999999999999999865332 2211222234577899999876422 2222111
Q ss_pred ccccccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
..+ .+.+|+|+.-.|- ..+...+..+...|+||+.++..+-
T Consensus 101 -----------------~~~--~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 101 -----------------ADY--PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred -----------------ccc--cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 011 3469999987773 4556678889999999999887544
No 339
>PLN02827 Alcohol dehydrogenase-like
Probab=92.12 E-value=0.89 Score=40.37 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=59.0
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC--ccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD--RTFTASMNERVDG 143 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~ 143 (237)
+.+|.+||-.|+|. |.+++.+++ .|...|+++|.++...+.|++ .+... -+..... ++. +
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~---~i~~~~~~~~~~---------~ 254 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTD---FINPNDLSEPIQ---------Q 254 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcE---EEcccccchHHH---------H
Confidence 56789999998764 555566665 466679999999887776643 24321 0110000 110 0
Q ss_pred cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEeccC
Q 026513 144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL 197 (237)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~~ 197 (237)
.+.... .+.+|+|+-.... ...+.....++++| |.+++-+..
T Consensus 255 --------~v~~~~-~~g~d~vid~~G~---~~~~~~~l~~l~~g~G~iv~~G~~ 297 (378)
T PLN02827 255 --------VIKRMT-GGGADYSFECVGD---TGIATTALQSCSDGWGLTVTLGVP 297 (378)
T ss_pred --------HHHHHh-CCCCCEEEECCCC---hHHHHHHHHhhccCCCEEEEECCc
Confidence 001111 2268999864432 12345667788998 999876543
No 340
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.98 E-value=0.62 Score=40.69 Aligned_cols=44 Identities=30% Similarity=0.444 Sum_probs=33.2
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQ 111 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~ 111 (237)
+.+|.+||-.|+|. |..++.+++....+++++|.++..++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 46789999999965 666666666533469999999988877754
No 341
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=91.92 E-value=0.79 Score=39.01 Aligned_cols=58 Identities=31% Similarity=0.421 Sum_probs=46.4
Q ss_pred HHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc
Q 026513 58 KLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN 116 (237)
Q Consensus 58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~ 116 (237)
.++.+.++....++..|||..+|+|+.++.+.+.+ ..++|+|+++..++.+.+.+...
T Consensus 210 ~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~-r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLG-RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcC-CceEEEecCHHHHHHHHHHHHhh
Confidence 34444444455689999999999999998888774 45899999999999999887654
No 342
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=91.64 E-value=1.1 Score=37.78 Aligned_cols=78 Identities=26% Similarity=0.382 Sum_probs=49.6
Q ss_pred HHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccccccccCCCCCCce
Q 026513 84 LGIAAIKFG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKY 162 (237)
Q Consensus 84 ~~~~la~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 162 (237)
++..+.+.| ..+|+|.|.++..++.|++. |+.. ... ...+. -..+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~---~~~-~~~~~--------------------------~~~~ 46 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL----GIID---EAS-TDIEA--------------------------VEDA 46 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSS---EEE-SHHHH--------------------------GGCC
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCee---ecc-CCHhH--------------------------hcCC
Confidence 345666665 57899999999988777533 4432 111 00111 1357
Q ss_pred eEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 163 DVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 163 D~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
|+|+...|...+.+++..+...+++|+.+.=.+
T Consensus 47 DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 47 DLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp SEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--
T ss_pred CEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeC
Confidence 999999999999999999999999987766443
No 343
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.41 E-value=3.5 Score=35.52 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=65.4
Q ss_pred CeEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 72 ELFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 72 ~~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
.+|+-+|+|. |.++..|++.|. .|+.++-++..++..++. .|+. +. ..++.....+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~---~Gl~-----i~-~~g~~~~~~~~----------- 61 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQA---GGLT-----LV-EQGQASLYAIP----------- 61 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhc---CCeE-----Ee-eCCcceeeccC-----------
Confidence 4689999996 466777777764 588898887555544431 1221 11 01110000000
Q ss_pred cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
.......++||+|+...=.....+.++.+..++.++..++....--...+.+...+
T Consensus 62 ---~~~~~~~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~ 117 (305)
T PRK05708 62 ---AETADAAEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARV 117 (305)
T ss_pred ---CCCcccccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhC
Confidence 00001135899998866555667788899999999998777544333444455544
No 344
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=91.41 E-value=1.9 Score=32.84 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=51.3
Q ss_pred eEEEEcCcch---HHHHHHHHhCCCeEEEEeCC--HHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 73 LFLDYGTGSG---ILGIAAIKFGAAMSVGADID--PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 73 ~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s--~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
++|-.|+++| .++..+++.|..+|+.+.-+ ....+.....+...+ . ++.+++.|..+. +.+.++++.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~----~~~~~~~D~~~~---~~~~~~~~~ 73 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-A----KITFIECDLSDP---ESIRALIEE 73 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-S----EEEEEESETTSH---HHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-c----cccccccccccc---ccccccccc
Confidence 5777887766 34455566678889999988 555555555555444 2 488888887642 223333333
Q ss_pred cccccccCCCCCCceeEEEEeCC
Q 026513 148 LSSHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~ 170 (237)
.. ...++.|+++++..
T Consensus 74 ~~-------~~~~~ld~li~~ag 89 (167)
T PF00106_consen 74 VI-------KRFGPLDILINNAG 89 (167)
T ss_dssp HH-------HHHSSESEEEEECS
T ss_pred cc-------cccccccccccccc
Confidence 21 11368999998775
No 345
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.25 E-value=2.8 Score=30.84 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=61.6
Q ss_pred cCCCeEEEEcCcch-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGSG-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.+| +|.++|-|-= ..+..++++|.. ++++|+++. ++. .| +.++..|++++.+.
T Consensus 13 ~~g-kVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~-------~a~-~g-------~~~v~DDitnP~~~--------- 66 (129)
T COG1255 13 ARG-KVVEVGIGFFLDVAKRLAERGFD-VLATDINEK-------TAP-EG-------LRFVVDDITNPNIS--------- 66 (129)
T ss_pred cCC-cEEEEccchHHHHHHHHHHcCCc-EEEEecccc-------cCc-cc-------ceEEEccCCCccHH---------
Confidence 445 8999998865 345567778755 999999996 111 22 66778888864321
Q ss_pred cccccccCCCCCCceeEEEE-eCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCH
Q 026513 148 LSSHKIRGISQTEKYDVVIA-NILLNPLLQLADHIVSYAKPGAVVGISGILSEQL 201 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~-n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~ 201 (237)
- =...|+|++ -||.+.+..+++-.. +-|.-+|+.....+..
T Consensus 67 -------i---Y~~A~lIYSiRpppEl~~~ildva~---aVga~l~I~pL~Ge~v 108 (129)
T COG1255 67 -------I---YEGADLIYSIRPPPELQSAILDVAK---AVGAPLYIKPLTGEPV 108 (129)
T ss_pred -------H---hhCccceeecCCCHHHHHHHHHHHH---hhCCCEEEEecCCCCC
Confidence 1 146899988 566666666655444 4567788876665543
No 346
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.22 E-value=0.83 Score=42.39 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=31.6
Q ss_pred CCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513 70 GGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQ 111 (237)
Q Consensus 70 ~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~ 111 (237)
++.+|+-+|+|. |..+..+++.-...|+++|.++..++.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 457999999997 566666665423459999999998777664
No 347
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.17 E-value=1.9 Score=36.86 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=60.1
Q ss_pred CeEEEEcCcc--hHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 72 ELFLDYGTGS--GILGIAAIKFGAA-MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 72 ~~vLDlG~G~--G~~~~~la~~~~~-~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.+|+-+|.|. |.++..+...|.. .+++.|.+...++.+.+. ++.. +. ..+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~d-----~~-~~~~---------------- 57 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVID-----EL-TVAG---------------- 57 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Cccc-----cc-ccch----------------
Confidence 4688888874 5667777666554 488999998877766532 3321 00 0110
Q ss_pred ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEE
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 192 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~li 192 (237)
........|+||...|......+++++...|++|..+.
T Consensus 58 ------~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 58 ------LAEAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ------hhhhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence 01114568999999999999999999998888887654
No 348
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=90.87 E-value=2.8 Score=36.16 Aligned_cols=101 Identities=21% Similarity=0.357 Sum_probs=57.1
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
.+++.+||..|+|. |..++.+++. |...+++++.++...+.+++. +... -+.....++.+
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~---vi~~~~~~~~~----------- 226 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATD---IINPKNGDIVE----------- 226 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcE---EEcCCcchHHH-----------
Confidence 45788899877653 5566666654 545788998888776665542 2211 01111111110
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+........+|+++...... ..+....+.|+++|+++..+
T Consensus 227 ------~i~~~~~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 227 ------QILELTGGRGVDCVIEAVGFE---ETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ------HHHHHcCCCCCcEEEEccCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 011122235799998643321 35566778889999988654
No 349
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=90.62 E-value=2.3 Score=38.04 Aligned_cols=105 Identities=19% Similarity=0.351 Sum_probs=61.4
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV 144 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~ 144 (237)
+.+|.+||-.|+|. |..++.+++ .|...++.+|.++..++.|++. |.. .+..... +..+
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~----~v~~~~~~~~~~---------- 244 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE----TVDLSKDATLPE---------- 244 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe----EEecCCcccHHH----------
Confidence 56788888888764 555566665 4777677889988777777653 321 1111111 1110
Q ss_pred ccccccccccCCCCCCceeEEEEeCChHH-----------HHHHHHHHhHhcCCCeEEEEeccC
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILLNP-----------LLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~-----------~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.+........+|+++-...... ....++...+++++||.+++.++.
T Consensus 245 -------~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 245 -------QIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred -------HHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 0011122346899885332210 013567778899999999997664
No 350
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.38 E-value=2.2 Score=37.42 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=61.2
Q ss_pred ccCCCeEEEEcC-c-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513 68 IKGGELFLDYGT-G-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV 144 (237)
Q Consensus 68 ~~~~~~vLDlG~-G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~ 144 (237)
+.+|.+||-.|+ | .|.+++.+++.-..++++++.++...+.+++. .|... -+..... +..+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~~---vi~~~~~~~~~~---------- 219 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFDE---AFNYKEEPDLDA---------- 219 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCCE---EEECCCcccHHH----------
Confidence 567899999998 3 47777777765345699999998877666532 23321 0111111 1110
Q ss_pred ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.+.... .+.+|+++-...- ..+..+.+.|+++|.+++.+..
T Consensus 220 -------~i~~~~-~~gvD~v~d~vG~----~~~~~~~~~l~~~G~iv~~G~~ 260 (348)
T PLN03154 220 -------ALKRYF-PEGIDIYFDNVGG----DMLDAALLNMKIHGRIAVCGMV 260 (348)
T ss_pred -------HHHHHC-CCCcEEEEECCCH----HHHHHHHHHhccCCEEEEECcc
Confidence 011111 2468999865432 3456778889999999876543
No 351
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.34 E-value=3.4 Score=35.55 Aligned_cols=89 Identities=26% Similarity=0.288 Sum_probs=56.4
Q ss_pred CeEEEEcCcc-h-HHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccc
Q 026513 72 ELFLDYGTGS-G-ILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDL 148 (237)
Q Consensus 72 ~~vLDlG~G~-G-~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 148 (237)
.+|.-+|+|. | .++..+...|. .+|+++|.++..++.+++ .++.. . ...+..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~-----~-~~~~~~--------------- 61 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD-----R-VTTSAA--------------- 61 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc-----e-ecCCHH---------------
Confidence 4688899886 3 34444555554 479999999987766543 23211 0 011110
Q ss_pred ccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513 149 SSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 149 ~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii 193 (237)
.. -...|+|+...|......++..+...++++..++.
T Consensus 62 ------~~--~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 62 ------EA--VKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ------HH--hcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence 01 23689999988877777778888888899886654
No 352
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=90.30 E-value=4.8 Score=33.79 Aligned_cols=126 Identities=16% Similarity=0.154 Sum_probs=79.3
Q ss_pred HHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccc
Q 026513 59 LCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMN 138 (237)
Q Consensus 59 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 138 (237)
..+..+... .+|.+ |...||+-.++..+.+. ..++.++|..|.=....+.++... . ++.+.++|.+....
T Consensus 79 ~yl~~i~~l-N~~~~-l~~YpGSP~lA~~llR~-qDRl~l~ELHp~D~~~L~~~f~~d--~----~vrv~~~DG~~~l~- 148 (279)
T COG2961 79 PYLDAVRQL-NPGGG-LRYYPGSPLLARQLLRE-QDRLVLTELHPSDAPLLRNNFAGD--R----RVRVLRGDGFLALK- 148 (279)
T ss_pred HHHHHHHHh-CCCCC-cccCCCCHHHHHHHcch-hceeeeeecCccHHHHHHHHhCCC--c----ceEEEecCcHHHHh-
Confidence 334444433 34443 99999999998888766 566999999999988888887632 2 47888999874321
Q ss_pred ccccccccccccccccCCCCCCceeEEEEeCChHHH---HHHH---HHHhHhcCCCeEEEEe-cc-CCCCHHHHHHHHhh
Q 026513 139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPL---LQLA---DHIVSYAKPGAVVGIS-GI-LSEQLPHIINRYSE 210 (237)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~---~~~l---~~~~~~L~~gG~liis-~~-~~~~~~~~~~~~~~ 210 (237)
..+.+.++--+|+++||++.- ..++ ++..... ++|...|- .+ ...+...+...++.
T Consensus 149 ---------------a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf-~~g~yaiWYPik~r~~~~~f~~~L~~ 212 (279)
T COG2961 149 ---------------AHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRF-ATGTYAIWYPIKDRRQIRRFLRALEA 212 (279)
T ss_pred ---------------hhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhh-cCceEEEEEeecchHHHHHHHHHHhh
Confidence 134456678999999998543 3333 3334443 44444442 22 34445555555553
No 353
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.91 E-value=4.5 Score=32.74 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=35.6
Q ss_pred CCCeEEEEcCcchHHHH----HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGILGI----AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~----~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.+++||-.|++.| ++. .+++.|. +|++++-++...+.+.+.+...+ .+.++.+|+.+
T Consensus 4 ~~~~vlItGa~g~-iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~Dl~~ 64 (238)
T PRK05786 4 KGKKVAIIGVSEG-LGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYG------NIHYVVGDVSS 64 (238)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC------CeEEEECCCCC
Confidence 3678999998654 333 3334454 69999998877665544443322 26677788764
No 354
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=89.82 E-value=2.6 Score=36.62 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=59.0
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.+|.+||-.|+|. |..++.+++. |..+|++++.++...+.+++. +... -+.....++.+
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~---~i~~~~~~~~~----------- 231 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATI---VLDPTEVDVVA----------- 231 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCE---EECCCccCHHH-----------
Confidence 46788888888653 4455555544 655899999999887777542 3321 01111111110
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.+........+|+++-..... ..+..+.+.|+++|.++.-+..
T Consensus 232 ------~l~~~~~~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 232 ------EVRKLTGGGGVDVSFDCAGVQ---ATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred ------HHHHHhCCCCCCEEEECCCCH---HHHHHHHHhccCCCEEEEEccC
Confidence 011112234599999755321 2346677788999999875543
No 355
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.73 E-value=1.4 Score=35.00 Aligned_cols=95 Identities=15% Similarity=0.189 Sum_probs=54.1
Q ss_pred EEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc-------C-CCCC-----cceEEeccCcccccccc
Q 026513 74 FLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN-------N-IGPK-----KMKLHLVPDRTFTASMN 138 (237)
Q Consensus 74 vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~-------~-~~~~-----~~~v~~~~~d~~~~~~~ 138 (237)
|.-+|+|+ | .++..++.. ..+|+.+|.+++.++.+++.+... + ++.. .-++.+ ..|.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl------ 73 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDL------ 73 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSG------
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCH------
Confidence 56678876 3 344444555 466999999999998888766531 1 1100 000111 1111
Q ss_pred ccccccccccccccccCCCCCCceeEEEEeCC--hHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 139 ERVDGVVEDLSSHKIRGISQTEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~--~~~~~~~l~~~~~~L~~gG~liis 194 (237)
......|+|+-..+ ++.-.+++.++.+.++|+..|..+
T Consensus 74 ------------------~~~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 74 ------------------EEAVDADLVIEAIPEDLELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp ------------------GGGCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred ------------------HHHhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEec
Confidence 11237899997665 444567899999999898887664
No 356
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=89.73 E-value=0.77 Score=38.45 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=33.4
Q ss_pred CeEEEEcCcchHHHHHHHHh---------CCCeEEEEeCCHHHHHHHHHHHHH
Q 026513 72 ELFLDYGTGSGILGIAAIKF---------GAAMSVGADIDPQAIKSAHQNAAL 115 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~la~~---------~~~~v~~vD~s~~~i~~a~~~~~~ 115 (237)
.+|+|+|+|+|.++.-+.+. ...+++.+|+|+...+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 69999999999998876642 135799999999998887777654
No 357
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.72 E-value=2.4 Score=36.06 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=53.9
Q ss_pred eEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 73 LFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 73 ~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
+|.=+|+|. |.++..+.+.| .+|+++|.++..++.+.+. +.. .....+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~~----g~~------~~~~~~~------------------ 52 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIER----GLV------DEASTDL------------------ 52 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHC----CCc------ccccCCH------------------
Confidence 466678775 45555665565 4699999999887766532 221 1001110
Q ss_pred ccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEE
Q 026513 151 HKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVV 191 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~l 191 (237)
. .-...|+|+...|.....++++.+...++++..+
T Consensus 53 ----~--~~~~aDlVilavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 53 ----S--LLKDCDLVILALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred ----h--HhcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 0 0246899999888877778888888888877544
No 358
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.53 E-value=3.5 Score=36.00 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=61.1
Q ss_pred ccCCCeEEEEcCcc--hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513 68 IKGGELFLDYGTGS--GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV 144 (237)
Q Consensus 68 ~~~~~~vLDlG~G~--G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 144 (237)
+++|.+||-.|... |.+++.+++. |. .++++-.+++-.+.+++ .+... -+.+...|+.+
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~---vi~y~~~~~~~---------- 201 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADH---VINYREEDFVE---------- 201 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCE---EEcCCcccHHH----------
Confidence 56799999999544 6788888875 55 56777777755554443 33321 12222333221
Q ss_pred ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCC
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILS 198 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~ 198 (237)
....+.....+|+|+...-... +......|+++|.++..+...
T Consensus 202 -------~v~~~t~g~gvDvv~D~vG~~~----~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 202 -------QVRELTGGKGVDVVLDTVGGDT----FAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred -------HHHHHcCCCCceEEEECCCHHH----HHHHHHHhccCCEEEEEecCC
Confidence 1112333457999997664333 344667889999999876644
No 359
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=89.36 E-value=2 Score=38.26 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=72.2
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHH-------HcCCCCCcceEEeccCccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAA-------LNNIGPKKMKLHLVPDRTFTASMNE 139 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~-------~~~~~~~~~~v~~~~~d~~~~~~~~ 139 (237)
+.++....|+|+|.|.+...++.+ +...-+|+++.+...+.|..+.. ..|-.+ -.+..++++...+..-
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~--~~~~~i~gsf~~~~~v- 266 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP--NKIETIHGSFLDPKRV- 266 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc--CceeecccccCCHHHH-
Confidence 578889999999999998887765 55667788887766666554432 222211 1467788887642211
Q ss_pred cccccccccccccccCCCCCCceeEEEEeCCh-HHH-HHHHHHHhHhcCCCeEEEEeccC
Q 026513 140 RVDGVVEDLSSHKIRGISQTEKYDVVIANILL-NPL-LQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-~~~-~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.+ + ....++|++|-.. +.- .--+.++..-+++|.+++-+.-+
T Consensus 267 ------~e--------I--~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L 310 (419)
T KOG3924|consen 267 ------TE--------I--QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPL 310 (419)
T ss_pred ------HH--------H--hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccc
Confidence 11 1 3578999987653 222 22245788888999999876443
No 360
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.33 E-value=3.4 Score=37.28 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=59.2
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
...|++|+-+|+|. |......++.-..+|+++|.++.....|. ..|. .+. +..
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~----~~G~-------~v~--~le------------- 245 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA----MDGF-------RVM--TME------------- 245 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH----hcCC-------EeC--CHH-------------
Confidence 35789999999998 44444444433456999999986433332 2232 111 110
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHH-HHhHhcCCCeEEEEeccCCC--CHHHHHHH
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLAD-HIVSYAKPGAVVGISGILSE--QLPHIINR 207 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~-~~~~~L~~gG~liis~~~~~--~~~~~~~~ 207 (237)
.. -...|++++... ...++. .....+++|++++..+.... +...+.+.
T Consensus 246 --------ea--l~~aDVVItaTG---~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 246 --------EA--AKIGDIFITATG---NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred --------HH--HhcCCEEEECCC---CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 00 135799887553 233443 37778999999998765432 34455443
No 361
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.19 E-value=3 Score=36.73 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=59.0
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC--ccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD--RTFTASMNERVDG 143 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~ 143 (237)
+++|.+||-.|+|. |.++..+++. |..+|+++|.++..++.+++ .+... -+..... ++. +
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~~~---------~ 247 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATD---CVNPKDHDKPIQ---------Q 247 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCE---EEcccccchHHH---------H
Confidence 56789999998764 5555666654 66579999999988777653 23221 0111110 010 0
Q ss_pred cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC-eEEEEeccC
Q 026513 144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG-AVVGISGIL 197 (237)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g-G~liis~~~ 197 (237)
.+.... .+.+|+|+-...- ...+....+.++++ |.+++.+..
T Consensus 248 --------~v~~~~-~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 248 --------VLVEMT-DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred --------HHHHHh-CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEccC
Confidence 001111 2368999864321 13456667788887 888876554
No 362
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.12 E-value=2 Score=38.52 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=36.2
Q ss_pred CeEEEEcCcc-hHHHH-HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513 72 ELFLDYGTGS-GILGI-AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 133 (237)
Q Consensus 72 ~~vLDlG~G~-G~~~~-~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~ 133 (237)
++||-||||. |.... .+++.+..+|+..|-|....+.+...... +++..+.|+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~--------~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG--------KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc--------cceeEEeccc
Confidence 4699999964 44433 34566768899999998887766554321 2556666665
No 363
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.05 E-value=2.8 Score=34.90 Aligned_cols=95 Identities=22% Similarity=0.153 Sum_probs=57.2
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.++|-.|+|. |..++.+++. |..+|++++.+++..+.+++. +... .+. ...-
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~---~~~--~~~~------------- 152 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPAD---PVA--ADTA------------- 152 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCc---ccc--ccch-------------
Confidence 46788899988765 5556666654 544499999998887766543 2111 010 1000
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.......+|+++..... ...+....+.|+++|.++..+.
T Consensus 153 ---------~~~~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 153 ---------DEIGGRGADVVIEASGS---PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ---------hhhcCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEEEec
Confidence 00113468999865322 1245666778899999987544
No 364
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=89.02 E-value=7.9 Score=32.97 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=54.1
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.++.+||-.|+|. |..++.+++.-..++++++.+++..+.+++ .+... +.... +
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~----~~~~~-~--------------- 208 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVET----VLPDE-A--------------- 208 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCcE----EeCcc-c---------------
Confidence 46788899887643 344444555433448999999988777765 24321 11100 0
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
......+|+++....- ...+..+...|+++|.++..
T Consensus 209 ---------~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 209 ---------ESEGGGFDVVVEATGS---PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ---------cccCCCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEE
Confidence 0124579999875422 12345566778999998864
No 365
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=88.57 E-value=3.2 Score=34.80 Aligned_cols=128 Identities=15% Similarity=0.185 Sum_probs=64.3
Q ss_pred hHHHHHHHHHhhccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513 56 TTKLCLLLLRRLIKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA 135 (237)
Q Consensus 56 ~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~ 135 (237)
.....+..++.....+. +...+|+-.++..+.+. ..+.+.+|+.+.-.+..++++.... ++.+...|.++.
T Consensus 45 ~l~~yl~~v~~~n~~~~--l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~~~L~~~~~~~~------~v~v~~~DG~~~ 115 (245)
T PF04378_consen 45 ALQPYLDAVRALNPDGE--LRFYPGSPAIAARLLRE-QDRLVLFELHPQDFEALKKNFRRDR------RVRVHHRDGYEG 115 (245)
T ss_dssp GGHHHHHHHHHHSSSSS----EEE-HHHHHHHHS-T-TSEEEEE--SHHHHHHHTTS--TTS-------EEEE-S-HHHH
T ss_pred HHHHHHHHHHHhccCCC--cCcCCCCHHHHHHhCCc-cceEEEEecCchHHHHHHHHhccCC------ccEEEeCchhhh
Confidence 33445555544333332 77888888888777765 5779999999999998888876432 488889998853
Q ss_pred cccccccccccccccccccCCCCCCceeEEEEeCChHH---HHHH---HHHHhHhcCCCeEEEEe-ccC-CCCHHHHHHH
Q 026513 136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNP---LLQL---ADHIVSYAKPGAVVGIS-GIL-SEQLPHIINR 207 (237)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~---~~~~---l~~~~~~L~~gG~liis-~~~-~~~~~~~~~~ 207 (237)
.. ..+.+..+=-+|+++||++. +.++ +..+.+.- +.|.+++- .+. ......+.+.
T Consensus 116 l~----------------allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~-~~G~~~iWYPi~~~~~~~~~~~~ 178 (245)
T PF04378_consen 116 LK----------------ALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRW-PTGVYAIWYPIKDRERVDRFLRA 178 (245)
T ss_dssp HH----------------HH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH--TTSEEEEEEEESSHHHHHHHHHH
T ss_pred hh----------------hhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhc-CCcEEEEEeecccHHHHHHHHHH
Confidence 21 13344567889999999643 3333 33333333 55655553 333 2233444444
Q ss_pred Hh
Q 026513 208 YS 209 (237)
Q Consensus 208 ~~ 209 (237)
+.
T Consensus 179 l~ 180 (245)
T PF04378_consen 179 LK 180 (245)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 366
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.52 E-value=11 Score=31.88 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=62.3
Q ss_pred eEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH-------HHcCC-CCCcc-----eEEeccCccccccc
Q 026513 73 LFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNA-------ALNNI-GPKKM-----KLHLVPDRTFTASM 137 (237)
Q Consensus 73 ~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~-------~~~~~-~~~~~-----~v~~~~~d~~~~~~ 137 (237)
+|.-+|+|. +.++..++..|. +|+++|.+++.++.+++.+ ...+. ..... ++.+ ..|.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~----- 77 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL----- 77 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-----
Confidence 577788885 355555666654 6999999999987665432 22221 10000 0110 0110
Q ss_pred cccccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 138 NERVDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
..-...|+|+...+- ..-..++..+.+.++++..+ .+..-.-...++...+
T Consensus 78 -------------------~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il-~s~ts~~~~~~la~~~ 130 (282)
T PRK05808 78 -------------------DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAIL-ATNTSSLSITELAAAT 130 (282)
T ss_pred -------------------HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHHHHHHhh
Confidence 012468999987653 33357888899999988776 4433334444555544
No 367
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.34 E-value=1.7 Score=36.75 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=52.6
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
+.+|....|+|+-+|+.+..+.+. ...|+++|--+.+- ++-..| .++....|.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~ma~-----sL~dtg------~v~h~r~DGf-------------- 262 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPMAQ-----SLMDTG------QVTHLREDGF-------------- 262 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc-ceEEEEeccchhhh-----hhhccc------ceeeeeccCc--------------
Confidence 568999999999999999999988 45599999887432 222222 3666677776
Q ss_pred cccccccCCCC-CCceeEEEEeCCh
Q 026513 148 LSSHKIRGISQ-TEKYDVVIANILL 171 (237)
Q Consensus 148 ~~~~~~~~~~~-~~~fD~I~~n~~~ 171 (237)
.+.+ ..+.|..+|+++-
T Consensus 263 -------k~~P~r~~idWmVCDmVE 280 (358)
T COG2933 263 -------KFRPTRSNIDWMVCDMVE 280 (358)
T ss_pred -------ccccCCCCCceEEeehhc
Confidence 3333 5689999999963
No 368
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.28 E-value=1.3 Score=38.49 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=36.3
Q ss_pred hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHH
Q 026513 67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQN 112 (237)
Q Consensus 67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~ 112 (237)
.+++|.++.-.|.|. |.-.+.-++ .|+.+++|+|++++-.+.|++-
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 367899999999987 444444454 5899999999999999888764
No 369
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.10 E-value=9.9 Score=32.26 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=55.3
Q ss_pred eEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 73 LFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 73 ~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
+|+-+|+|. | .++..+++.| .+|+.++-+++.++..++ .++. +. .++..... .
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~----~g~~-----~~--~~~~~~~~------~------- 56 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNE----NGLR-----LE--DGEITVPV------L------- 56 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHH----cCCc-----cc--CCceeecc------c-------
Confidence 578899986 3 3444555555 469999987766654443 2321 10 11100000 0
Q ss_pred ccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 151 HKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
..........+|+|+...+......+++.+...+.++..++..
T Consensus 57 -~~~~~~~~~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 57 -AADDPAELGPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred -CCCChhHcCCCCEEEEecccccHHHHHHHHhhhcCCCCEEEEe
Confidence 0001111257999998777666778888888888887766654
No 370
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=88.00 E-value=1.5 Score=38.51 Aligned_cols=46 Identities=26% Similarity=0.493 Sum_probs=37.4
Q ss_pred hccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHH
Q 026513 67 LIKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQN 112 (237)
Q Consensus 67 ~~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~ 112 (237)
..++|.+|.-+|||. |.-++.-+. .|+.+++++|+++.-++.|++-
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 357899999999986 666665554 5899999999999999988764
No 371
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.86 E-value=3.4 Score=39.27 Aligned_cols=95 Identities=9% Similarity=-0.028 Sum_probs=56.6
Q ss_pred CeEEEEcCcc-hHHHH-HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 72 ELFLDYGTGS-GILGI-AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 72 ~~vLDlG~G~-G~~~~-~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
.+|+-+|+|. |.... .+.+. ...++.+|.|++.++.+++ .+ ..++.+|..+..+-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~----~g-------~~v~~GDat~~~~L----------- 457 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN-KMRITVLERDISAVNLMRK----YG-------YKVYYGDATQLELL----------- 457 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHh----CC-------CeEEEeeCCCHHHH-----------
Confidence 3577777765 43322 23334 3469999999999887764 23 44678888743211
Q ss_pred cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
+. ..-.+.|.+++...-+.....+....+.+.|...++..
T Consensus 458 ----~~-agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 458 ----RA-AGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred ----Hh-cCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 11 11357888887665444333344445556788888764
No 372
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=87.76 E-value=7.1 Score=33.13 Aligned_cols=88 Identities=20% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccc-ccccccccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTAS-MNERVDGVV 145 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~ 145 (237)
.|+.+|--|.++|. .+..+++.| .+|+.++.+++.++...+.+...+... -++..+..|..+.. +..++...+
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~G-a~v~i~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAG-AKVVITGRSEERLEETAQELGGLGYTG--GKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCC--CeeEEEECcCCCHHHHHHHHHHHH
Confidence 47889999998884 344566675 559999999999888877766555431 14667778875321 111122222
Q ss_pred cccccccccCCCCCCceeEEEEeCC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~ 170 (237)
+.+ .++.|+++.|..
T Consensus 84 ~~~----------~GkidiLvnnag 98 (270)
T KOG0725|consen 84 EKF----------FGKIDILVNNAG 98 (270)
T ss_pred HHh----------CCCCCEEEEcCC
Confidence 221 478999998764
No 373
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.68 E-value=6.5 Score=31.73 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=25.9
Q ss_pred CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCC
Q 026513 71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADID 102 (237)
Q Consensus 71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s 102 (237)
+.+|+-+|||. |. .+..|+..|..+++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 56899999995 54 4556778899999999987
No 374
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.68 E-value=4.3 Score=35.17 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=65.0
Q ss_pred eEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccccccc
Q 026513 73 LFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSS 150 (237)
Q Consensus 73 ~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 150 (237)
+|+-+|+|. |+++..|++.| ..|+.+--++. ++..+++ |+. +.-..+.......
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----GL~-----i~~~~~~~~~~~~------------- 57 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----GLR-----IEDEGGNFTTPVV------------- 57 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----CeE-----EecCCCccccccc-------------
Confidence 688899996 56777888887 55555555553 4444433 432 2111110000000
Q ss_pred ccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 151 HKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 151 ~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
.........++|+|+...--....+.++.+...+++...+++-..--...+.+...+
T Consensus 58 -~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~ 114 (307)
T COG1893 58 -AATDAEALGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKIL 114 (307)
T ss_pred -cccChhhcCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhC
Confidence 000111235899999988777788899999999999998887644333334344333
No 375
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.49 E-value=3.3 Score=37.60 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=54.6
Q ss_pred cCCCeEEEEcCcc-hHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
..|++|+-+|+|. |......+ ..|. +|+.+|.++.....+.. .+. .+. +..
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~-------~v~--~l~------------- 262 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF-------RVM--TME------------- 262 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC-------Eec--CHH-------------
Confidence 4789999999997 43333333 3455 79999999865433321 131 111 111
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHH-HHhHhcCCCeEEEEeccCC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLAD-HIVSYAKPGAVVGISGILS 198 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~-~~~~~L~~gG~liis~~~~ 198 (237)
.. -..+|+|+....- ..++. .....+|+|++++..+...
T Consensus 263 --------ea--l~~aDVVI~aTG~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 263 --------EA--AELGDIFVTATGN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred --------HH--HhCCCEEEECCCC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 11 1368999876422 23443 5778899999999876654
No 376
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.49 E-value=5.6 Score=31.72 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=28.4
Q ss_pred ceeEEEEeCC----------hHHHHHHHHHHhHhcCCCeEEEEe-ccCCCCHHHHH
Q 026513 161 KYDVVIANIL----------LNPLLQLADHIVSYAKPGAVVGIS-GILSEQLPHII 205 (237)
Q Consensus 161 ~fD~I~~n~~----------~~~~~~~l~~~~~~L~~gG~liis-~~~~~~~~~~~ 205 (237)
..|+++...+ +..+...++.+...++++..+++. .+.--..+++.
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~ 131 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELL 131 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHH
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhh
Confidence 5788876433 456778889999999998888874 44433344333
No 377
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.40 E-value=5.5 Score=38.03 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=56.3
Q ss_pred CeEEEEcCcc-hHHHHH-HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 72 ELFLDYGTGS-GILGIA-AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 72 ~~vLDlG~G~-G~~~~~-la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
.+|+-+|+|. |..... +.+.+ ..++.+|.|++.++.+++ .+ ..++.+|..+..+-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~----~g-------~~v~~GDat~~~~L----------- 457 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRK----FG-------MKVFYGDATRMDLL----------- 457 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHh----cC-------CeEEEEeCCCHHHH-----------
Confidence 5788888886 544333 33443 459999999999888764 23 44678887743211
Q ss_pred cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
+. ..-.+.|++++...-+.....+....+.+.|+-.++..
T Consensus 458 ----~~-agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 458 ----ES-AGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred ----Hh-cCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 11 11347888887554433333333344445677666653
No 378
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=87.40 E-value=1.1 Score=37.30 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=33.1
Q ss_pred HHHHhhcc--CCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Q 026513 62 LLLRRLIK--GGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQ 111 (237)
Q Consensus 62 ~~l~~~~~--~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~ 111 (237)
..+...++ +..+++|+.||+|.++..+.. ...+++.-|+++..+...+.
T Consensus 10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKA 60 (260)
T ss_dssp HHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHH
Confidence 33444444 678999999999999988766 46779999999988777663
No 379
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.39 E-value=7.1 Score=33.29 Aligned_cols=99 Identities=13% Similarity=0.123 Sum_probs=58.9
Q ss_pred ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.+|.+||-.|. |.|..++.+++....++++++.+++..+.+++ .|... -+.....++.+
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~~---vi~~~~~~~~~----------- 202 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFDA---VFNYKTVSLEE----------- 202 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCE---EEeCCCccHHH-----------
Confidence 567889998884 34677777776534469999999887777654 24321 01111111110
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+.... ...+|+|+....- ..+....+.|+++|+++..+
T Consensus 203 ------~v~~~~-~~gvd~vld~~g~----~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 203 ------ALKEAA-PDGIDCYFDNVGG----EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred ------HHHHHC-CCCcEEEEECCCH----HHHHHHHHhhccCCEEEEEc
Confidence 001111 2469999854322 34567788899999998643
No 380
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.16 E-value=7.5 Score=32.37 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=49.4
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.++++|-.|+++|. ++..+++.|. +|+.++.++..++.+.+.+....-. ++.++..|+.+.. .+..+++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~Dv~~~~---~i~~~~~ 78 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNV----DVSYIVADLTKRE---DLERTVK 78 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCC----ceEEEEecCCCHH---HHHHHHH
Confidence 46788988887663 3444555665 5899999988776666555432111 3667788876532 1222222
Q ss_pred ccccccccCCCCCCceeEEEEeC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANI 169 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~ 169 (237)
.. ..-++.|+++.|.
T Consensus 79 ~~--------~~~g~iD~lv~na 93 (263)
T PRK08339 79 EL--------KNIGEPDIFFFST 93 (263)
T ss_pred HH--------HhhCCCcEEEECC
Confidence 21 0124688888765
No 381
>PRK06701 short chain dehydrogenase; Provisional
Probab=87.01 E-value=6.4 Score=33.42 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=33.2
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHH-HHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQ-AIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~-~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|++.|. ++..+++.| .+|+.++.++. ..+.....+...+. ++.++.+|+.+
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G-~~V~l~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~ 107 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEG-ADIAIVYLDEHEDANETKQRVEKEGV-----KCLLIPGDVSD 107 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCC-----eEEEEEccCCC
Confidence 46789999876652 333444555 45778877642 23333333333231 36677888764
No 382
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.95 E-value=3.8 Score=35.98 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=58.6
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+||-.|+|. |..++.+++ .|...++++|.++...+.+++. +... -+.....+..+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~~---~i~~~~~~~~~----------- 245 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GATH---VINPKEEDLVA----------- 245 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCcE---EecCCCcCHHH-----------
Confidence 45688899888754 555566665 4666799999999877666542 3211 01100111110
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+.... ...+|+|+..... ...+..+.+.++++|.++..+.
T Consensus 246 ------~v~~~~-~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 246 ------AIREIT-GGGVDYALDTTGV---PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred ------HHHHHh-CCCCcEEEECCCC---cHHHHHHHHHhccCCEEEEeCc
Confidence 001112 3469999865422 1245667788899999887543
No 383
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=86.66 E-value=4 Score=33.00 Aligned_cols=104 Identities=12% Similarity=0.235 Sum_probs=61.7
Q ss_pred ccCCCeEEEEcCcchHHHHHHHH----hC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513 68 IKGGELFLDYGTGSGILGIAAIK----FG-AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD 142 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~----~~-~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 142 (237)
++| ..|++.|+--|.-++.+|. .| ..+|+++|+|-...+-+... .+ ++.+++++..++-..+-++
T Consensus 68 ~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p----~i~f~egss~dpai~eqi~ 137 (237)
T COG3510 68 LQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VP----DILFIEGSSTDPAIAEQIR 137 (237)
T ss_pred cCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CC----CeEEEeCCCCCHHHHHHHH
Confidence 344 4799999999877776653 23 25699999987664432211 23 3889999877544332222
Q ss_pred ccccccccccccCCCCCCceeEEEEeCChHHHH---HHHHHHhHhcCCCeEEEEe
Q 026513 143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLL---QLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~---~~l~~~~~~L~~gG~liis 194 (237)
... .++.-+.+|--.-|+.. .-++.+..+|.-|-++++-
T Consensus 138 ------------~~~-~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 138 ------------RLK-NEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred ------------HHh-cCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEe
Confidence 111 12222333333333433 4456677899999999984
No 384
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.63 E-value=9.4 Score=32.72 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=59.1
Q ss_pred ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+++|.+||-.|. |.|..++.+++....++++++.+++..+.+++ .|... -+.....+... +
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~~---vi~~~~~~~~~--------~-- 198 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFDV---AFNYKTVKSLE--------E-- 198 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCE---EEeccccccHH--------H--
Confidence 567889999884 35677777776534469999999887776653 24321 01111111110 0
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+.... .+.+|+|+-...- ..+....+.|+++|+++..+
T Consensus 199 ------~~~~~~-~~gvdvv~d~~G~----~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 199 ------TLKKAS-PDGYDCYFDNVGG----EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred ------HHHHhC-CCCeEEEEECCCH----HHHHHHHHHhCcCcEEEEec
Confidence 001111 3469999864422 23466788899999999754
No 385
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=86.58 E-value=5.4 Score=34.32 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=58.1
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.+|.+||..|+|. |..++.+++.-..+++++..+++..+.+++. +... -+.....+..+
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~---v~~~~~~~~~~------------ 217 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADD---TINVGDEDVAA------------ 217 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCE---EecCcccCHHH------------
Confidence 56788999998764 6666667765445688888888777766432 2221 01111111110
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+........+|+++..... ...+..+.+.|+++|.++..+
T Consensus 218 -----~l~~~~~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 218 -----RLRELTDGEGADVVIDATGN---PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred -----HHHHHhCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence 01112223469999875421 234566777888999988644
No 386
>PRK05876 short chain dehydrogenase; Provisional
Probab=86.41 E-value=11 Score=31.75 Aligned_cols=59 Identities=24% Similarity=0.216 Sum_probs=37.6
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+++|. ++..+++.|. +|+.++.++..++...+.+...+. ++.++..|+.+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-----~~~~~~~Dv~d 66 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF-----DVHGVMCDVRH 66 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----eEEEEeCCCCC
Confidence 36788888877652 3334445554 588999998777665555543332 36677788764
No 387
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.37 E-value=16 Score=31.18 Aligned_cols=124 Identities=10% Similarity=0.126 Sum_probs=63.5
Q ss_pred CeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc--CCCCCcceEEeccCccccccccccccccccc
Q 026513 72 ELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN--NIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 72 ~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.+|.-+|+|. | .++..++..|. +|+.+|.+++.++.+++.+... ++.. . ...+...... .+...+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~----~-~~~g~~~~~~----~~~~~~~ 73 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRN----L-VEKGKMSEDE----AKAIMAR 73 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHH----H-HHcCCCCHHH----HHHHHhC
Confidence 3688889985 3 44555556654 6999999999998776654432 1100 0 0000000000 0000000
Q ss_pred cccccccCCCCCCceeEEEEeCChH--HHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLN--PLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~--~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
.. .-.....-...|+|+...+-. ....++..+...++++..+ +|..-.-...++...+
T Consensus 74 i~--~~~~~~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il-~S~tsg~~~~~la~~~ 133 (291)
T PRK06035 74 IR--TSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETII-ASNTSGIMIAEIATAL 133 (291)
T ss_pred cE--eeCCHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEE-EEcCCCCCHHHHHhhc
Confidence 00 000000124579998866543 3567788888888887754 4544444555565554
No 388
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.33 E-value=5.2 Score=35.91 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=31.8
Q ss_pred ceeEEEEeCC----------hHHHHHHHHHHhHhcCCCeEEEE-eccCCCCHHHHHHHHh
Q 026513 161 KYDVVIANIL----------LNPLLQLADHIVSYAKPGAVVGI-SGILSEQLPHIINRYS 209 (237)
Q Consensus 161 ~fD~I~~n~~----------~~~~~~~l~~~~~~L~~gG~lii-s~~~~~~~~~~~~~~~ 209 (237)
..|+++...| +.......+.+...|++|-.+++ |....-..+++..-+.
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~pll 143 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLL 143 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHH
Confidence 6787765433 45556678889999999999998 4444333444444333
No 389
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=86.32 E-value=12 Score=30.58 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=37.7
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|++.|. ++..+++.|. +|+.++-++..++...+.+...+. ++.++.+|+.+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGG-----AAEALAFDIAD 71 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEccCCC
Confidence 47789988865542 2233444554 699999998777665555554432 26677778764
No 390
>PRK07814 short chain dehydrogenase; Provisional
Probab=86.26 E-value=11 Score=31.12 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=37.1
Q ss_pred CCCeEEEEcCcchHHHHH----HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGILGIA----AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~----la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
+++++|-.|++. .++.. ++..|. +|++++.++..++...+.+...+. ++.++..|..+
T Consensus 9 ~~~~vlItGasg-gIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~D~~~ 70 (263)
T PRK07814 9 DDQVAVVTGAGR-GLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGR-----RAHVVAADLAH 70 (263)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEEccCCC
Confidence 467899888654 44443 444555 799999998777665555543321 36677788764
No 391
>PRK07109 short chain dehydrogenase; Provisional
Probab=86.03 E-value=8.5 Score=33.51 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=38.5
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+++|. ++..+++.| .+|+.++-++..++...+.+...+. ++.++.+|+.+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~l~~~g~-----~~~~v~~Dv~d 68 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRG-AKVVLLARGEEGLEALAAEIRAAGG-----EALAVVADVAD 68 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC-----cEEEEEecCCC
Confidence 35678888876552 233344555 4688999998887776666654442 36677888764
No 392
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=85.95 E-value=7 Score=33.76 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=59.9
Q ss_pred ccCCCeEEEEcC--cchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC-cccccccccccccc
Q 026513 68 IKGGELFLDYGT--GSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD-RTFTASMNERVDGV 144 (237)
Q Consensus 68 ~~~~~~vLDlG~--G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~ 144 (237)
+++|.+||-.|+ |.|.+++.+++.-..++++++.+++..+.+++.+ |... -+..... +..+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~---vi~~~~~~~~~~---------- 212 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDD---AFNYKEEPDLDA---------- 212 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCce---eEEcCCcccHHH----------
Confidence 567899999986 3466777777653446899998888777766432 3321 0111111 1110
Q ss_pred ccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+.... ...+|+|+-...- ..+....+.|+++|.++..+
T Consensus 213 -------~i~~~~-~~gvd~v~d~~g~----~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 213 -------ALKRYF-PNGIDIYFDNVGG----KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred -------HHHHhC-CCCcEEEEECCCH----HHHHHHHHHhccCcEEEEec
Confidence 001111 2469999854421 34567788899999998754
No 393
>PLN02494 adenosylhomocysteinase
Probab=85.94 E-value=3.6 Score=37.84 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=54.4
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
...|++|+-+|+|. |......+ .+|. +|+++|.++.....|.. .+.. +. +..
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~~-------vv--~le------------ 304 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGYQ-------VL--TLE------------ 304 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCCe-------ec--cHH------------
Confidence 34689999999997 43333333 3454 69999999865433321 2221 11 111
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHH-HHHHhHhcCCCeEEEEeccC
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQL-ADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~-l~~~~~~L~~gG~liis~~~ 197 (237)
.. -...|+|++...- ..+ .......+++||+|+..+..
T Consensus 305 ---------Ea--l~~ADVVI~tTGt---~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 305 ---------DV--VSEADIFVTTTGN---KDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred ---------HH--HhhCCEEEECCCC---ccchHHHHHhcCCCCCEEEEcCCC
Confidence 00 1357999985532 222 35677789999999997664
No 394
>PRK07063 short chain dehydrogenase; Provisional
Probab=85.92 E-value=12 Score=30.71 Aligned_cols=61 Identities=26% Similarity=0.315 Sum_probs=38.6
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+++|. ++..+++.|. +|+.++.++..++...+.+....... ++.++..|+.+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~Dl~~ 69 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGA---RVLAVPADVTD 69 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCc---eEEEEEccCCC
Confidence 36789988876552 3334445554 58999998887776666555421111 36677888764
No 395
>PTZ00357 methyltransferase; Provisional
Probab=85.89 E-value=2.5 Score=40.61 Aligned_cols=109 Identities=11% Similarity=0.070 Sum_probs=60.1
Q ss_pred eEEEEcCcchHHHHHHH---H-hCC-CeEEEEeCCHHHHHHHHHHHHH-cCCCCC----cceEEeccCcccccccccccc
Q 026513 73 LFLDYGTGSGILGIAAI---K-FGA-AMSVGADIDPQAIKSAHQNAAL-NNIGPK----KMKLHLVPDRTFTASMNERVD 142 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la---~-~~~-~~v~~vD~s~~~i~~a~~~~~~-~~~~~~----~~~v~~~~~d~~~~~~~~~~~ 142 (237)
.|+-+|+|.|-+..... . .+. -+|+++|-++.++...+.+... ....+. .-+|+++..|+++-..++.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~-- 780 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAE-- 780 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccc--
Confidence 58999999997655433 2 232 4699999998776555554322 122110 1148889999874321100
Q ss_pred ccccccccccccCCCCCCceeEEEEeCC--h---HHHHHHHHHHhHhcCC----CeE
Q 026513 143 GVVEDLSSHKIRGISQTEKYDVVIANIL--L---NPLLQLADHIVSYAKP----GAV 190 (237)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~--~---~~~~~~l~~~~~~L~~----gG~ 190 (237)
.........-+++|+||+-.. + +...+.++-+.+.||+ +|+
T Consensus 781 -------~~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 781 -------NGSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred -------cccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 000000111248999997332 1 2224566666667765 675
No 396
>PRK07904 short chain dehydrogenase; Provisional
Probab=85.88 E-value=3.7 Score=34.06 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=38.6
Q ss_pred cCCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHH-HHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 69 KGGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQA-IKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~-i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
..+++||-.|+++|. ++..+++.|..+|+.++-++.. ++.+.+.+...+.. ++.++..|+.+
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~----~v~~~~~D~~~ 71 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGAS----SVEVIDFDALD 71 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCC----ceEEEEecCCC
Confidence 446789999986652 2333445555678888887764 55554445443322 37777888764
No 397
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=85.69 E-value=6 Score=34.16 Aligned_cols=49 Identities=18% Similarity=0.009 Sum_probs=34.2
Q ss_pred CceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 160 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 160 ~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
+.+|+|+.........+.++.+..++++++.++....--.....+...+
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~ 119 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREIL 119 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHC
Confidence 5799999876665666788888889999998776544333344454444
No 398
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=85.61 E-value=3.1 Score=29.97 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=29.4
Q ss_pred ceeEEEEeCChHH-----------------HHHHHHHHhHhcCCCeEEEEe---ccC--CCCHHHHHHHHh
Q 026513 161 KYDVVIANILLNP-----------------LLQLADHIVSYAKPGAVVGIS---GIL--SEQLPHIINRYS 209 (237)
Q Consensus 161 ~fD~I~~n~~~~~-----------------~~~~l~~~~~~L~~gG~liis---~~~--~~~~~~~~~~~~ 209 (237)
+||+|+.|||... +.-++.....+| +|.+.+. .++ ......+.+.+.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~ 70 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLL 70 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHh
Confidence 6999999999522 223577777777 8887442 445 333445555544
No 399
>PRK07576 short chain dehydrogenase; Provisional
Probab=85.52 E-value=11 Score=31.29 Aligned_cols=58 Identities=14% Similarity=0.028 Sum_probs=34.8
Q ss_pred CCCeEEEEcCcchHHHHH----HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGILGIA----AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~----la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
+++++|-.|.+. .++.. ++..| .+|++++.++..++...+.+...+. ++.++..|+.+
T Consensus 8 ~~k~ilItGasg-gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~ 69 (264)
T PRK07576 8 AGKNVVVVGGTS-GINLGIAQAFARAG-ANVAVASRSQEKVDAAVAQLQQAGP-----EGLGVSADVRD 69 (264)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCC-----ceEEEECCCCC
Confidence 467888888644 44443 33444 4599999988776655444443321 25566777754
No 400
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.48 E-value=5.9 Score=34.27 Aligned_cols=104 Identities=29% Similarity=0.360 Sum_probs=58.0
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.+|.+||-.|+|. |..+..+++. |...+++++.+++..+.+++. +... + +..+-.+. +.+.
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~----v--i~~~~~~~------~~~~ 223 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATH----T--VNVRTEDT------PESA 223 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcE----E--eccccccc------hhHH
Confidence 56788888887764 5566666654 555589998888777666442 3221 1 11110000 0000
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
+ .+........+|+|+...... ..+....+.|+++|+++..+
T Consensus 224 ~-----~~~~~~~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 224 E-----KIAELLGGKGPDVVIECTGAE---SCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred H-----HHHHHhCCCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 0 011122245699999654322 24566778889999988654
No 401
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=85.44 E-value=3.3 Score=31.34 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=37.0
Q ss_pred CCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 159 TEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 159 ~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
..+||+|+...-.......++.+...+.++..+++...--...+.+.+.+
T Consensus 65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 46899999988777778889999999999988887655444444444444
No 402
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.20 E-value=14 Score=30.55 Aligned_cols=59 Identities=24% Similarity=0.169 Sum_probs=39.2
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|++.|. ++..++..|. +++.++-++..++...+.+...+. ++.++..|+.+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~ 70 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGI-----EAHGYVCDVTD 70 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEcCCCC
Confidence 46789999988763 3344555655 488889888877766666654332 36677788764
No 403
>PRK08324 short chain dehydrogenase; Validated
Probab=85.17 E-value=6.6 Score=37.87 Aligned_cols=58 Identities=24% Similarity=0.182 Sum_probs=35.9
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
+|+++|-.|++.|. ++..++..|. +|+++|.++..++.+.+.+... . .+.++..|+.+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~--~----~v~~v~~Dvtd 481 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP--D----RALGVACDVTD 481 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc--C----cEEEEEecCCC
Confidence 46788888865441 2223444554 6999999998776655444322 1 36677777764
No 404
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.68 E-value=11 Score=31.30 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=32.5
Q ss_pred CCCeEEEEcCcch-HHHHHH----HHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSG-ILGIAA----IKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G-~~~~~l----a~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.|+++|-.|+++| .++..+ ++.|. +|+.++.+....+..++.....+ . +.++..|+.+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~--~----~~~~~~D~~~ 71 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD--A----PIFLPLDVRE 71 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc--c----ceEEecCcCC
Confidence 4678999998762 555444 44554 58888887654333333322211 1 3355677654
No 405
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=84.65 E-value=6.1 Score=34.10 Aligned_cols=100 Identities=17% Similarity=0.245 Sum_probs=58.3
Q ss_pred ccCC--CeEEEEcC--cchHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccc
Q 026513 68 IKGG--ELFLDYGT--GSGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVD 142 (237)
Q Consensus 68 ~~~~--~~vLDlG~--G~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 142 (237)
+++| .+||-.|+ |.|..++.+++. |..+|++++.+++..+.+++. .|... -+.....++.+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~---vi~~~~~~~~~-------- 215 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDA---AINYKTDNVAE-------- 215 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcE---EEECCCCCHHH--------
Confidence 3444 78999886 356777777765 554799999998776666543 23321 01111111110
Q ss_pred ccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+.... ...+|+|+....-. .+....+.|+++|.++.-+
T Consensus 216 ---------~i~~~~-~~gvd~vid~~g~~----~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 216 ---------RLRELC-PEGVDVYFDNVGGE----ISDTVISQMNENSHIILCG 254 (345)
T ss_pred ---------HHHHHC-CCCceEEEECCCcH----HHHHHHHHhccCCEEEEEe
Confidence 011122 24699998644322 2366778899999998743
No 406
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.63 E-value=8.2 Score=36.24 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=55.3
Q ss_pred CeEEEEcCcc-hHH-HHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 72 ELFLDYGTGS-GIL-GIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 72 ~~vLDlG~G~-G~~-~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
.+++-+|||. |.. +..+.+.+ ..++.+|.+++.++.+++. + ...+.+|..++.+-
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~~----g-------~~~i~GD~~~~~~L----------- 474 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG-IPLVVIETSRTRVDELRER----G-------IRAVLGNAANEEIM----------- 474 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHC----C-------CeEEEcCCCCHHHH-----------
Confidence 4678788876 433 22333444 4599999999988877632 3 55778888753211
Q ss_pred cccccCCCCCCceeEEEEeCChHHHH-HHHHHHhHhcCCCeEEEEec
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPLL-QLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~~-~~l~~~~~~L~~gG~liis~ 195 (237)
+.. .-+++|.+++..+-+... .+... .+...|+..++...
T Consensus 475 ----~~a-~i~~a~~viv~~~~~~~~~~iv~~-~~~~~~~~~iiar~ 515 (558)
T PRK10669 475 ----QLA-HLDCARWLLLTIPNGYEAGEIVAS-AREKRPDIEIIARA 515 (558)
T ss_pred ----Hhc-CccccCEEEEEcCChHHHHHHHHH-HHHHCCCCeEEEEE
Confidence 111 135789777654433322 23333 34457777777653
No 407
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=84.48 E-value=7.6 Score=34.37 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=56.5
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC---cccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD---RTFTASMNERVD 142 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~ 142 (237)
+++|.+||-.|+|. |..++.+++. |..++++++.++...+.+++ .++.. -+..... +..+
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~---~v~~~~~~~~~~~~-------- 265 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADY---VFNPTKMRDCLSGE-------- 265 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE---EEcccccccccHHH--------
Confidence 45788888887754 4444555554 65579999998876555543 24321 0111100 1100
Q ss_pred ccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+........+|+|+.... . ....+..+.+.|+++|.++..+
T Consensus 266 ---------~v~~~~~g~gvDvvld~~g-~-~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 266 ---------KVMEVTKGWGADIQVEAAG-A-PPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred ---------HHHHhcCCCCCCEEEECCC-C-cHHHHHHHHHHHHcCCEEEEEC
Confidence 0112223456999986432 1 1234566677888999998654
No 408
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=84.41 E-value=22 Score=30.02 Aligned_cols=125 Identities=13% Similarity=0.025 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhccC-CCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHH-HHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 57 TKLCLLLLRRLIKG-GELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQ-AIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 57 ~~~~~~~l~~~~~~-~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~-~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
++.+-+.+...+.. ...|+.+|||-=+....+.... .+.-.|++-. +++.-++.+...+... .-+..++..|+..
T Consensus 67 tr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~-~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 67 TRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQPAVLAFKEKVLAELGAEP-PAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCC--CCeEEECCChHHHHHHHHHHHHcCCCC-CCceEEeccCchh
Confidence 34444455444333 3479999999887776664332 2445555443 4555555555443211 1146777888752
Q ss_pred ccccccccccccccccccccCCCCCCceeEEEEeCCh-----HHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 135 ASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILL-----NPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~-----~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
+|.+.+. ..-......-++++-.++ ....+++..+.....||+.+++..+
T Consensus 144 --------~w~~~L~----~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 144 --------DWPAALA----AAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred --------hHHHHHH----hCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 1111110 011112345566665554 3345778888888889999998644
No 409
>PRK09242 tropinone reductase; Provisional
Probab=84.31 E-value=17 Score=29.76 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=38.3
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+++|. ++..+++.|. +|+.++.+++.++...+.+....-. .++.++.+|+.+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~---~~~~~~~~Dl~~ 71 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPE---REVHGLAADVSD 71 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCC---CeEEEEECCCCC
Confidence 46789999886552 3333445554 6999998887776665555433111 147777888764
No 410
>PRK06194 hypothetical protein; Provisional
Probab=84.30 E-value=14 Score=30.88 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=35.3
Q ss_pred CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
++++|-.|.++|. ++..+++.|. +|+.+|.++..++...+.+...+. ++.++.+|+.+
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGA-----EVLGVRTDVSD 66 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCC-----eEEEEECCCCC
Confidence 5678877765442 2333444554 689999988776655444443322 36777888764
No 411
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=84.28 E-value=4 Score=35.14 Aligned_cols=95 Identities=23% Similarity=0.272 Sum_probs=56.5
Q ss_pred CCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 70 GGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 70 ~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
++.+||..|+|. |..+..+++. |..++++++.++...+.+++. +.. .+ +..+-..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~----~v--i~~~~~~------------- 221 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD----ET--VNLARDP------------- 221 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC----EE--EcCCchh-------------
Confidence 688899988765 5666666654 655799999998877755432 321 11 1111000
Q ss_pred cccccccCCC-CCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 148 LSSHKIRGIS-QTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 148 ~~~~~~~~~~-~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
..... ....+|+++...... ..+..+.+.|+++|.++..+
T Consensus 222 -----~~~~~~~~~~vd~vld~~g~~---~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 222 -----LAAYAADKGDFDVVFEASGAP---AALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -----hhhhhccCCCccEEEECCCCH---HHHHHHHHHHhcCCEEEEEe
Confidence 00111 124599999754321 23466778889999998644
No 412
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=84.11 E-value=3.2 Score=30.92 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=41.7
Q ss_pred CCceeEEEEeCCh------HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHhh-ccccceeee-cCCEEEEEEEE
Q 026513 159 TEKYDVVIANILL------NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYSE-FLEDILVSE-MDDWTCVSGKK 230 (237)
Q Consensus 159 ~~~fD~I~~n~~~------~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~w~~~~~~~ 230 (237)
...+|+|+.++.. -+..++++.+.+++++||.+..-+ ....+...+.. +|...+... .+....+.+.+
T Consensus 48 ~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys----~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 48 DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS----SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp -T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee----chHHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 3789999998732 223578999999999999887732 22445555544 476665554 34566666654
No 413
>PRK06139 short chain dehydrogenase; Provisional
Probab=84.09 E-value=3.8 Score=35.76 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=39.0
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+++|. ++..+++.|. +|+.++-++..++...+.+...+. ++.++..|+.+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~-----~~~~~~~Dv~d 67 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA-----EVLVVPTDVTD 67 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----cEEEEEeeCCC
Confidence 36788888886652 3334455554 588999999888777666665443 26666777764
No 414
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=84.03 E-value=2.6 Score=36.54 Aligned_cols=110 Identities=13% Similarity=0.179 Sum_probs=64.2
Q ss_pred CeEEEEcCcchHHHHHHHH-h------C-----C---------CeEEEEeCCHH--HHHHHHHHHHHc------------
Q 026513 72 ELFLDYGTGSGILGIAAIK-F------G-----A---------AMSVGADIDPQ--AIKSAHQNAALN------------ 116 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~la~-~------~-----~---------~~v~~vD~s~~--~i~~a~~~~~~~------------ 116 (237)
.+||-||.|.|.-.++++. . . . -.++++|+.+- .++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999854433331 1 0 0 26999999654 344444443333
Q ss_pred -CCCCCcceEEeccCccccccccccccccccccccccccCCCCCCceeEEEEeCC--------hHHHHHHHHHHhHhcCC
Q 026513 117 -NIGPKKMKLHLVPDRTFTASMNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL--------LNPLLQLADHIVSYAKP 187 (237)
Q Consensus 117 -~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~--------~~~~~~~l~~~~~~L~~ 187 (237)
......+.+.|.+.|+.+...++ +..+......|+|..-.. +....+++.++...++|
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~-------------l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~ 234 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDD-------------LKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP 234 (315)
T ss_pred ccCCccceeeeEEecccccCChHH-------------HHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC
Confidence 23456667888899887533221 001111123455543221 12234789999999999
Q ss_pred CeEEEEe
Q 026513 188 GAVVGIS 194 (237)
Q Consensus 188 gG~liis 194 (237)
|..|+|.
T Consensus 235 GslLLVv 241 (315)
T PF11312_consen 235 GSLLLVV 241 (315)
T ss_pred CcEEEEE
Confidence 9999994
No 415
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=83.97 E-value=3.1 Score=36.59 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=53.8
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
..+|.+||-.|+|. |.+++.+++.-..++++++.++.....+ ++..|... + +...+..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~---~~~~Ga~~----v-i~~~~~~------------- 239 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEA---INRLGADS----F-LVSTDPE------------- 239 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhH---HHhCCCcE----E-EcCCCHH-------------
Confidence 35788999998874 6666667765334588888776543222 12233321 1 1001100
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+... .+.+|+|+-.... ...+....+.|+++|.++..+.
T Consensus 240 -----~~~~~--~~~~D~vid~~g~---~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 240 -----KMKAA--IGTMDYIIDTVSA---VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -----HHHhh--cCCCCEEEECCCC---HHHHHHHHHHhcCCcEEEEeCC
Confidence 00111 1258999854321 1245667788999999987654
No 416
>PRK12937 short chain dehydrogenase; Provisional
Probab=83.95 E-value=14 Score=29.92 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=30.0
Q ss_pred CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeC-CHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADI-DPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~-s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
+++++|-.|++.| .++..+++.|.. ++.+.. ++...+...+.+...+. ++.++..|+.+
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~ 66 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAGSAAAADELVAEIEAAGG-----RAIAVQADVAD 66 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHHHhcCC-----eEEEEECCCCC
Confidence 3567888887544 223334455554 555443 33333333333333221 36777788764
No 417
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=83.93 E-value=11 Score=32.89 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=56.2
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.+|.+||-.|+|. |..+..+++. |..+|++++.++...+.+++ .+... +......... ++.+
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~----vi~~~~~~~~--------~~~~ 239 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADA----TIDIDELPDP--------QRRA 239 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCe----EEcCcccccH--------HHHH
Confidence 4788888888653 4444555554 55489999988877665542 24321 1111110000 0000
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+........+|+++..... ...+....+.++++|+++..+.
T Consensus 240 -----~i~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 240 -----IVRDITGGRGADVVIEASGH---PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred -----HHHHHhCCCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEEcC
Confidence 01112223569999865422 1234566788899999987543
No 418
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=83.91 E-value=1.4 Score=35.54 Aligned_cols=24 Identities=17% Similarity=-0.015 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHhcCCCeEEEEecc
Q 026513 173 PLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 173 ~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+..++..+.++|+|||.+++.+-
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHHHhhcCCCeeEEEEec
Confidence 345678999999999999998633
No 419
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.90 E-value=12 Score=31.72 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=61.9
Q ss_pred eEEEEcCcc--hHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 73 LFLDYGTGS--GILGIAAIKFG---AAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 73 ~vLDlG~G~--G~~~~~la~~~---~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
+|.=||||. +.++..+.+.+ ..++++.|.++..++.+.+. .++ .. ..+..
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~---~g~-------~~-~~~~~-------------- 58 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK---YGI-------TI-TTNNN-------------- 58 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh---cCc-------EE-eCCcH--------------
Confidence 577788886 24444455544 24699999998776554332 232 11 11111
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHHh
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRYS 209 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~~ 209 (237)
.. -...|+||...+-..+.++++.+...++++ .+++|-...-+...+.+.+.
T Consensus 59 -------e~--~~~aDiIiLavkP~~~~~vl~~l~~~~~~~-~lvISi~AGi~i~~l~~~l~ 110 (272)
T PRK12491 59 -------EV--ANSADILILSIKPDLYSSVINQIKDQIKND-VIVVTIAAGKSIKSTENEFD 110 (272)
T ss_pred -------HH--HhhCCEEEEEeChHHHHHHHHHHHHhhcCC-cEEEEeCCCCcHHHHHHhcC
Confidence 01 135699987665577778888888777654 67777666666667766664
No 420
>PRK06128 oxidoreductase; Provisional
Probab=83.12 E-value=14 Score=31.40 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=54.3
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHH--HHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQ--AIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGV 144 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~--~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 144 (237)
.++++|-.|++.|. ++..+++.|. +|+.+..+.. ..+...+.+...+. ++.++.+|+.+.. .+.++
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~~~---~v~~~ 124 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGR-----KAVALPGDLKDEA---FCRQL 124 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCC-----eEEEEecCCCCHH---HHHHH
Confidence 36789999965542 3334445554 4666655432 22223333333221 3667778876422 11111
Q ss_pred ccccccccccCCCCCCceeEEEEeCCh------------HHH-----------HHHHHHHhHhcCCCeEEEE
Q 026513 145 VEDLSSHKIRGISQTEKYDVVIANILL------------NPL-----------LQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 145 ~~~~~~~~~~~~~~~~~fD~I~~n~~~------------~~~-----------~~~l~~~~~~L~~gG~lii 193 (237)
++.. ...-++.|++|.|... ... -.+++.+...++.+|.++.
T Consensus 125 ~~~~-------~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~ 189 (300)
T PRK06128 125 VERA-------VKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred HHHH-------HHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEE
Confidence 1110 0012468999986631 001 1235666667777887776
No 421
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.93 E-value=19 Score=30.69 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=54.2
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.++.++|-.|+|. |..++.+++....++++++.++...+.+++ .+... +. ..+
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~~----~~--~~~--------------- 219 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGADW----AG--DSD--------------- 219 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCcE----Ee--ccC---------------
Confidence 45677888887663 344444555434678999888876665532 23321 11 111
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.. ....+|+++..... ...+..+.+.|+++|.+++.+
T Consensus 220 --------~~-~~~~vD~vi~~~~~---~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 220 --------DL-PPEPLDAAIIFAPV---GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred --------cc-CCCcccEEEEcCCc---HHHHHHHHHHhhcCCEEEEEc
Confidence 00 13468988764322 135677888999999998754
No 422
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.92 E-value=4.7 Score=33.18 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=38.6
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+++|. ++..+++.|. +|+.++.++..++...+.+...+. ++.++..|+.+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~D~~~ 69 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGG-----KVVPVCCDVSQ 69 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-----eEEEEEccCCC
Confidence 46789999987652 3334455554 588999998877766655554331 36667777764
No 423
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=82.72 E-value=8.6 Score=33.27 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=26.5
Q ss_pred CCCeEEEEcCcc-hHHHHHH-HHhCCCeEEEEeCCHHHH
Q 026513 70 GGELFLDYGTGS-GILGIAA-IKFGAAMSVGADIDPQAI 106 (237)
Q Consensus 70 ~~~~vLDlG~G~-G~~~~~l-a~~~~~~v~~vD~s~~~i 106 (237)
++.+|+-+|+|. |...... ...+..+|+.++.++...
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra 215 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERA 215 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 588999999975 4443333 334677899999998654
No 424
>PRK08507 prephenate dehydrogenase; Validated
Probab=82.66 E-value=11 Score=31.94 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=52.5
Q ss_pred eEEEEcCcc--hHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 73 LFLDYGTGS--GILGIAAIKFGA-AMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 73 ~vLDlG~G~--G~~~~~la~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
+|.=+|+|. |.++..+.+.|. .+|++.|.++..++.+++ .+... . ..+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~----~---~~~~~---------------- 54 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVD----E---IVSFE---------------- 54 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCc----c---cCCHH----------------
Confidence 466678775 345555555554 369999999987766542 23211 0 01110
Q ss_pred cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEE
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVG 192 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~li 192 (237)
.. . ..|+|+...|.....+++..+.. ++++..++
T Consensus 55 -----~~--~-~aD~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 55 -----EL--K-KCDVIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred -----HH--h-cCCEEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 11 1 38999998888777888888887 88776444
No 425
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=82.60 E-value=11 Score=32.58 Aligned_cols=101 Identities=15% Similarity=0.265 Sum_probs=56.2
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+||-.|+|. |..++.+++. |..++++++.++...+.+++ .+... -+.....+...
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~---~v~~~~~~~~~----------- 225 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATH---TVNSAKGDAIE----------- 225 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCc---eeccccccHHH-----------
Confidence 45678888777643 3444455554 54678899998877666553 23321 01111111100
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+........+|+++..... ...+..+.+.|+++|.++.-+
T Consensus 226 ------~i~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 226 ------QVLELTDGRGVDVVIEAVGI---PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred ------HHHHHhCCCCCCEEEECCCC---HHHHHHHHHhccCCcEEEEec
Confidence 01112223569999865421 224566778899999998643
No 426
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=82.53 E-value=14 Score=32.40 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=26.5
Q ss_pred CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCCH
Q 026513 71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADIDP 103 (237)
Q Consensus 71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s~ 103 (237)
+.+|+-+|||. |. .+..|++.|..+++.+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 56899999995 54 45567788999999999975
No 427
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=82.42 E-value=24 Score=29.93 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=55.8
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.+.++|--|+.+|. ++..+++.|. .++.+-=+.+.++..++.+.... . +++.++..|+.++.-.+.+.+.+.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~-~---v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKT-G---VEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhh-C---ceEEEEECcCCChhHHHHHHHHHH
Confidence 46789999988883 4555666654 48899999998888777766543 1 148889999876432221111111
Q ss_pred ccccccccCCCCCCceeEEEEeCC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~ 170 (237)
. .....|+.|.|..
T Consensus 80 ~----------~~~~IdvLVNNAG 93 (265)
T COG0300 80 E----------RGGPIDVLVNNAG 93 (265)
T ss_pred h----------cCCcccEEEECCC
Confidence 1 1247999998875
No 428
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=82.40 E-value=12 Score=32.14 Aligned_cols=99 Identities=7% Similarity=0.002 Sum_probs=52.3
Q ss_pred CCCeEEEE--cCc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 70 GGELFLDY--GTG-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 70 ~~~~vLDl--G~G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
++..++-+ |+| .|..++.+++.-..++++++.++...+.+++ .+... -+.....++.+
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~---~i~~~~~~~~~------------ 202 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAEY---VLNSSDPDFLE------------ 202 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCcE---EEECCCccHHH------------
Confidence 34445544 443 3556666666534469999999987777764 24321 01111111110
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+........+|+++....-.. .......++++|.++.-+.
T Consensus 203 -----~v~~~~~~~~~d~vid~~g~~~----~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 203 -----DLKELIAKLNATIFFDAVGGGL----TGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred -----HHHHHhCCCCCcEEEECCCcHH----HHHHHHhhCCCCEEEEEEe
Confidence 0111222346899986443222 2345667899999887543
No 429
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.26 E-value=4.5 Score=36.20 Aligned_cols=44 Identities=9% Similarity=-0.064 Sum_probs=33.6
Q ss_pred ccCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Q 026513 68 IKGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQN 112 (237)
Q Consensus 68 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~ 112 (237)
+.++.+||-|.+|.....-++... .++|++||+||......+-.
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHH
Confidence 578889999988776665555444 67799999999988765543
No 430
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.17 E-value=22 Score=29.07 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=37.5
Q ss_pred CCCeEEEEcCcchHHHHHHH----HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGILGIAAI----KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la----~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+ +|.++..++ ..|. +|++++-++..++...+.+...+. ++.++..|+.+
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-----~~~~~~~D~~~ 70 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGL-----SAHALAFDVTD 70 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc-----eEEEEEccCCC
Confidence 4678998885 454454444 4454 699999998877666555554332 36667777764
No 431
>PRK05854 short chain dehydrogenase; Provisional
Probab=82.14 E-value=6.3 Score=33.92 Aligned_cols=87 Identities=17% Similarity=0.095 Sum_probs=48.8
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.+++++-.|+++|. ++..+++.| .+|+.+.-+....+.+.+.+...... .++.++..|+.+.. .+.++++
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~---~~v~~~~~Dl~d~~---sv~~~~~ 85 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAG-AEVILPVRNRAKGEAAVAAIRTAVPD---AKLSLRALDLSSLA---SVAALGE 85 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCC---CceEEEEecCCCHH---HHHHHHH
Confidence 36788888887663 333445555 46888888877766655555432211 13677788876422 1222222
Q ss_pred ccccccccCCCCCCceeEEEEeCC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~ 170 (237)
... ...++.|++|.|..
T Consensus 86 ~~~-------~~~~~iD~li~nAG 102 (313)
T PRK05854 86 QLR-------AEGRPIHLLINNAG 102 (313)
T ss_pred HHH-------HhCCCccEEEECCc
Confidence 210 01246898887653
No 432
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=82.11 E-value=10 Score=32.66 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=56.1
Q ss_pred ccCCCeEEEEcCc-chHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTG-SGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G-~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
..+|.+|+-.|+| .|..++.+++. |...|++++.++...+.+++. +... -+.....++.+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~---~v~~~~~~~~~----------- 220 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATY---VVNPFKEDVVK----------- 220 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcE---EEcccccCHHH-----------
Confidence 3567788877765 24555556654 544588888888766655432 3221 01111111110
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+........+|+++..... ...+..+.+.|+++|.++..+.
T Consensus 221 ------~l~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 221 ------EVADLTDGEGVDVFLEMSGA---PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred ------HHHHhcCCCCCCEEEECCCC---HHHHHHHHHhhcCCCEEEEEcc
Confidence 00112223569999875322 2345667788899999887554
No 433
>PRK05872 short chain dehydrogenase; Provisional
Probab=82.07 E-value=14 Score=31.40 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=45.6
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.++++|-.|+++|. ++..+++.|. +|+.++.++..++...+.+.. + . ++..+..|+.+.. .+..+++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~--~---~~~~~~~Dv~d~~---~v~~~~~ 77 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-D--D---RVLTVVADVTDLA---AMQAAAE 77 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-C--C---cEEEEEecCCCHH---HHHHHHH
Confidence 46789988876652 3333445554 689999988776655443321 1 1 2455567765421 1111111
Q ss_pred ccccccccCCCCCCceeEEEEeCC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~ 170 (237)
.. ...-++.|++|.|..
T Consensus 78 ~~-------~~~~g~id~vI~nAG 94 (296)
T PRK05872 78 EA-------VERFGGIDVVVANAG 94 (296)
T ss_pred HH-------HHHcCCCCEEEECCC
Confidence 10 001257899998774
No 434
>PRK12939 short chain dehydrogenase; Provisional
Probab=82.07 E-value=18 Score=29.35 Aligned_cols=58 Identities=17% Similarity=0.062 Sum_probs=35.5
Q ss_pred CCCeEEEEcCcchHHHHHHH----HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGILGIAAI----KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la----~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
+++++|-.|+ +|.++..++ +.| .++++++-++..++...+.+...+. ++.++.+|+.+
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~ 67 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAG-ATVAFNDGLAAEARELAAALEAAGG-----RAHAIAADLAD 67 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEEccCCC
Confidence 3677887776 444444443 444 4588888888766655554443221 36777888764
No 435
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=82.02 E-value=22 Score=29.10 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=36.2
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+++|. ++..+++.| .+|+.++.++..++.....+...+. ++.++..|+.+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G-~~vvl~~r~~~~~~~~~~~l~~~~~-----~~~~~~~Dl~~ 69 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYG-AEIIINDITAERAELAVAKLRQEGI-----KAHAAPFNVTH 69 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHHHhcCC-----eEEEEecCCCC
Confidence 46788888866542 333444555 4688999988776655555443321 35566777764
No 436
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=81.99 E-value=14 Score=32.40 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=25.9
Q ss_pred CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCC
Q 026513 71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADID 102 (237)
Q Consensus 71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s 102 (237)
..+|+-+|||. |. ++..|+..|..+++.+|.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56899999995 54 4556778899999999987
No 437
>PRK09072 short chain dehydrogenase; Provisional
Probab=81.76 E-value=18 Score=29.84 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=36.5
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
+++++|-.|+++|. ++..+++.| .+|++++.++..++.....+. .+ . ++.++..|+.+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~-~~-~----~~~~~~~D~~d 64 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRNAEKLEALAARLP-YP-G----RHRWVVADLTS 64 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHh-cC-C----ceEEEEccCCC
Confidence 35678888876652 334455555 459999999877766554442 11 1 36677788764
No 438
>PRK07035 short chain dehydrogenase; Provisional
Probab=81.58 E-value=7.2 Score=31.94 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=37.3
Q ss_pred CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
++++|-.|+++|. ++..+++.|. +|++++.++..++...+.+...+. ++.++..|+.+
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~ 68 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGG-----KAEALACHIGE 68 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----eEEEEEcCCCC
Confidence 5688888887663 3334555654 799999988777665555543332 25566777653
No 439
>PRK08265 short chain dehydrogenase; Provisional
Probab=81.48 E-value=18 Score=29.85 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=33.7
Q ss_pred CCCeEEEEcCcch---HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSG---ILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G---~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+++| .++..+++.|. +|+.++.++..++...+.+ + . ++.++.+|+.+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~--~---~~~~~~~Dl~~ 63 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G--E---RARFIATDITD 63 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C--C---eeEEEEecCCC
Confidence 3568888886554 23334445554 6999999876554433222 2 1 36677888764
No 440
>PRK07791 short chain dehydrogenase; Provisional
Probab=81.47 E-value=20 Score=30.29 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=34.3
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCH---------HHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDP---------QAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~---------~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|++.|. ++..+++.|. +|+.++.+. ..++.+.+.+...+. ++.++..|+.+
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~Dv~~ 75 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-----EAVANGDDIAD 75 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCC-----ceEEEeCCCCC
Confidence 46789999987763 3334555554 577777654 444444444433332 25566777764
No 441
>PRK08862 short chain dehydrogenase; Provisional
Probab=81.45 E-value=6.5 Score=32.13 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|++.|. ++..+++.|. +|+.++-++..++...+.+...+.. +.....|..+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~-----~~~~~~D~~~ 65 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDN-----VYSFQLKDFS 65 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCC-----eEEEEccCCC
Confidence 46789999999874 4445556654 5888999988887766655544322 4445566543
No 442
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=81.42 E-value=19 Score=30.88 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=56.0
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
..++.+||-.|+|. |..+..+++. |..++++++.++...+.+++ .+.. .+.....+..+
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~----------- 225 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD----HVLNASDDVVE----------- 225 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc----EEEcCCccHHH-----------
Confidence 45688899998654 3334444544 54678999988877665532 3432 12111111100
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+........+|+++..... ...+....+.|+++|.++.-+
T Consensus 226 ------~i~~~~~~~~~dvvld~~g~---~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 226 ------EVRELTGGRGADAVIDFVGS---DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred ------HHHHHhCCCCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 01122223469999975532 124566677889999988654
No 443
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=81.40 E-value=12 Score=32.12 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=55.7
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.++.+||-.|+|. |..+..+++....++++++.+++..+.+++ .+... -+.....+...
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~~---~i~~~~~~~~~------------ 221 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGAHH---YIDTSKEDVAE------------ 221 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCCcE---EecCCCccHHH------------
Confidence 45688999999653 455555565433469999999877776643 23221 01111111110
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+... ..+|+++..... ...+..+.+.|+++|.++..+.
T Consensus 222 -----~~~~~---~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 222 -----ALQEL---GGAKLILATAPN---AKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred -----HHHhc---CCCCEEEECCCc---hHHHHHHHHHcccCCEEEEEec
Confidence 00011 258999864311 2345667778899999887543
No 444
>PRK07478 short chain dehydrogenase; Provisional
Probab=81.39 E-value=7.5 Score=31.93 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=37.5
Q ss_pred CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
++++|-.|++.|. ++..+++.|. +|+.++-++..++.+.+.+...+. ++.++..|+.+
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~ 66 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGG-----EAVALAGDVRD 66 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----cEEEEEcCCCC
Confidence 5678888876552 3334445555 689999988877766665554432 26667778764
No 445
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=81.12 E-value=15 Score=31.97 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=30.5
Q ss_pred CceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 160 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 160 ~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
..+|+|+...+.....++++.+...++++..++....-......+.+.+
T Consensus 72 ~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~ 120 (341)
T PRK08229 72 ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAAL 120 (341)
T ss_pred cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhC
Confidence 4789999876655566777888888888765544333222233444443
No 446
>PRK12743 oxidoreductase; Provisional
Probab=81.05 E-value=19 Score=29.66 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=32.0
Q ss_pred CCeEEEEcCcchHHHHHH----HHhCCCeEEEE-eCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 71 GELFLDYGTGSGILGIAA----IKFGAAMSVGA-DIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~l----a~~~~~~v~~v-D~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
++++|-.|+++| ++..+ ++.|. +|+.+ ..+....+.+.+.+...+. ++.++..|+.+
T Consensus 2 ~k~vlItGas~g-iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~ 63 (256)
T PRK12743 2 AQVAIVTASDSG-IGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGV-----RAEIRQLDLSD 63 (256)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCC-----ceEEEEccCCC
Confidence 357888887554 44444 34554 46555 4455555555444444432 36677788764
No 447
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.97 E-value=6.8 Score=32.11 Aligned_cols=59 Identities=22% Similarity=0.132 Sum_probs=37.9
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+++|. ++..+++.| .+|+.++-++..++...+.+...+. ++.++.+|+.+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~ 67 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREG-AKVVVADRDAAGGEETVALIREAGG-----EALFVACDVTR 67 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEcCCCC
Confidence 36789999976542 233344555 4699999998877666555544332 36677888764
No 448
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=80.97 E-value=4 Score=30.99 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=27.3
Q ss_pred EEcCcch--HHHHHHH--H-hCCCeEEEEeCCHHHHHHHHHH--HHHcC
Q 026513 76 DYGTGSG--ILGIAAI--K-FGAAMSVGADIDPQAIKSAHQN--AALNN 117 (237)
Q Consensus 76 DlG~G~G--~~~~~la--~-~~~~~v~~vD~s~~~i~~a~~~--~~~~~ 117 (237)
|+|++.| .....+. . .+..+|+++|.+|...+..+++ +..++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 8999999 5555443 2 2467899999999999999999 65554
No 449
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=80.92 E-value=14 Score=32.68 Aligned_cols=33 Identities=18% Similarity=0.067 Sum_probs=26.3
Q ss_pred CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCCH
Q 026513 71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADIDP 103 (237)
Q Consensus 71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s~ 103 (237)
+.+||-+|||. |. .+..|+..|..+++.+|.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 56899999995 54 45567788999999999864
No 450
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=80.88 E-value=11 Score=32.88 Aligned_cols=101 Identities=15% Similarity=0.277 Sum_probs=56.9
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+||-.|+|. |..++.+++. |..+|++++.++...+.+++ .+... -+.....+...
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~~---vv~~~~~~~~~----------- 241 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGATH---TVNASEDDAVE----------- 241 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCeE---EeCCCCccHHH-----------
Confidence 45778888887752 5555566654 65569999998887766542 23221 01100111110
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+........+|+++..... ...+..+.+.|+++|.++..+
T Consensus 242 ------~l~~~~~~~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 242 ------AVRDLTDGRGADYAFEAVGR---AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred ------HHHHHcCCCCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEEEe
Confidence 01112224569999865432 134566777889999988643
No 451
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.73 E-value=27 Score=30.47 Aligned_cols=111 Identities=22% Similarity=0.205 Sum_probs=62.8
Q ss_pred CeEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH-------cCCCCCc--ceEEeccCcccccccccc
Q 026513 72 ELFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAAL-------NNIGPKK--MKLHLVPDRTFTASMNER 140 (237)
Q Consensus 72 ~~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~~~~~--~~v~~~~~d~~~~~~~~~ 140 (237)
.+|--||+|+ ..++..++..| .+|+..|.+++.++.++..+.. .++.... -++.+. .+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~------- 78 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIE------- 78 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHH-------
Confidence 4688888885 24455555564 5599999999988776654431 2211000 001110 0110
Q ss_pred ccccccccccccccCCCCCCceeEEEEeCCh--HHHHHHHHHHhHhcCCCeEEEEeccCCCCHHHHHHHH
Q 026513 141 VDGVVEDLSSHKIRGISQTEKYDVVIANILL--NPLLQLADHIVSYAKPGAVVGISGILSEQLPHIINRY 208 (237)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~--~~~~~~l~~~~~~L~~gG~liis~~~~~~~~~~~~~~ 208 (237)
.. -...|+|+-+.+- ..-..++..+.+.++|+.+|..+.. .-...++...+
T Consensus 79 --------------~a--v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS-~l~~s~la~~~ 131 (321)
T PRK07066 79 --------------AC--VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTS-GLLPTDFYARA 131 (321)
T ss_pred --------------HH--hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCC-ccCHHHHHHhc
Confidence 00 1467999987763 3345678899999999884444332 33445555443
No 452
>PRK05866 short chain dehydrogenase; Provisional
Probab=80.65 E-value=7.3 Score=33.15 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=37.1
Q ss_pred CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
++++|-.|+++|. ++..+++.| .+|++++-+++.++...+.+...+. ++.++..|+.+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G-~~Vi~~~R~~~~l~~~~~~l~~~~~-----~~~~~~~Dl~d 100 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRG-ATVVAVARREDLLDAVADRITRAGG-----DAMAVPCDLSD 100 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC-----cEEEEEccCCC
Confidence 5788988876552 233344454 4699999998877766555543332 25677788764
No 453
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=80.63 E-value=17 Score=30.87 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=26.9
Q ss_pred CceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEe
Q 026513 160 EKYDVVIANILLNPLLQLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 160 ~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis 194 (237)
..+|+|+...+-.....+++.+...+.++..++..
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEe
Confidence 57999988776666777888888888888766654
No 454
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.57 E-value=13 Score=31.72 Aligned_cols=99 Identities=23% Similarity=0.329 Sum_probs=56.7
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+||-.|+|. |...+.+++. |...+++++.+++..+.+++. +.. .++..+-.+. .
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~------~~~~~~~~~~--~------- 217 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT------ETVDPSREDP--E------- 217 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe------EEecCCCCCH--H-------
Confidence 45788999998652 4555555654 545589999998877766432 322 1111110000 0
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.........+|+++..... ...+..+.+.|+++|.++..+
T Consensus 218 -------~~~~~~~~~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 218 -------AQKEDNPYGFDVVIEATGV---PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred -------HHHHhcCCCCcEEEECCCC---hHHHHHHHHHHhcCCEEEEEe
Confidence 0001123579999975432 234566677889999998644
No 455
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=80.50 E-value=5.7 Score=34.85 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=55.7
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccC--ccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPD--RTFTASMNERVDG 143 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~ 143 (237)
+.+|.+||-.|+|. |..+..+++ .|...+++++.++...+.+++ .+... -+..... +..
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~---~v~~~~~~~~~~---------- 243 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATE---CINPRDQDKPIV---------- 243 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCe---ecccccccchHH----------
Confidence 46788888887753 444455555 466678999988887776643 23221 0111011 100
Q ss_pred cccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcC-CCeEEEEec
Q 026513 144 VVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAK-PGAVVGISG 195 (237)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~-~gG~liis~ 195 (237)
+ .+.... .+.+|+++..... ...+....+.|+ ++|.++..+
T Consensus 244 --~-----~l~~~~-~~~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 244 --E-----VLTEMT-DGGVDYAFEVIGS---ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred --H-----HHHHHh-CCCCcEEEECCCC---HHHHHHHHHHhccCCCEEEEEe
Confidence 0 001111 2468999854321 234556677788 999988754
No 456
>PRK06500 short chain dehydrogenase; Provisional
Probab=80.38 E-value=22 Score=28.84 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccc
Q 026513 71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTF 133 (237)
Q Consensus 71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~ 133 (237)
++++|-.|++.|. ++..+++.|. +|++++.++..++...+.+ +. ++.++..|..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~~-----~~~~~~~D~~ 62 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---GE-----SALVIRADAG 62 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---CC-----ceEEEEecCC
Confidence 5678888876542 2333445554 6889988876554433322 21 2556666765
No 457
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.31 E-value=11 Score=32.32 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=50.6
Q ss_pred CCCeEEEEcCcchH-HHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 70 GGELFLDYGTGSGI-LGIAAI-KFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 70 ~~~~vLDlG~G~G~-~~~~la-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.+++++-+|+|.-. .....+ ..|. +|+.+|.++...+.++. .+... +.+ .+..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~----~G~~~----~~~--~~l~-------------- 205 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITE----MGLSP----FHL--SELA-------------- 205 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCee----ecH--HHHH--------------
Confidence 57899999998633 233333 4554 89999999876555432 23221 110 1110
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii 193 (237)
.. -..+|+||...|... +-+.+...+++++.++-
T Consensus 206 -------~~--l~~aDiVI~t~p~~~---i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 206 -------EE--VGKIDIIFNTIPALV---LTKEVLSKMPPEALIID 239 (296)
T ss_pred -------HH--hCCCCEEEECCChhh---hhHHHHHcCCCCcEEEE
Confidence 11 246899998665432 23456667888887763
No 458
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.28 E-value=8.8 Score=31.21 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=35.7
Q ss_pred CCCeEEEEcCcchHHHHH----HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGILGIA----AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~----la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
+++++|-.|++.| ++.. +++.|. +|+.++.++..++.+.+.+...+. ++.++..|..+
T Consensus 4 ~~~~~lItG~~g~-iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~ 65 (253)
T PRK08217 4 KDKVIVITGGAQG-LGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGT-----EVRGYAANVTD 65 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----ceEEEEcCCCC
Confidence 3678998887544 3333 344554 689999998776665555543332 36666777653
No 459
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.24 E-value=0.59 Score=36.35 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=31.4
Q ss_pred CCCCCceeEEEEeCChHHHH-----HHHHHHhHhcCCCeEEEEe
Q 026513 156 ISQTEKYDVVIANILLNPLL-----QLADHIVSYAKPGAVVGIS 194 (237)
Q Consensus 156 ~~~~~~fD~I~~n~~~~~~~-----~~l~~~~~~L~~gG~liis 194 (237)
.+.+.+.|+|++.-+++++. ..++.+.+.|||||+|-++
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 34467899999877776653 5689999999999999885
No 460
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=80.24 E-value=14 Score=31.85 Aligned_cols=101 Identities=21% Similarity=0.249 Sum_probs=56.4
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.+|.+|+-.|+|. |..+..+++ .|..++++++.++...+.+++ .+... -+.....+..+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~~---~~~~~~~~~~~------------ 222 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATR---AVNVAKEDLRD------------ 222 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCcE---EecCccccHHH------------
Confidence 4678888877654 555555665 465578888888876665543 23221 01110111100
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+........+|+|+..... ...+..+.+.|+++|.++..+.
T Consensus 223 -----~~~~~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 223 -----VMAELGMTEGFDVGLEMSGA---PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred -----HHHHhcCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence 01112224568999874322 2244667778899999988654
No 461
>PRK08818 prephenate dehydrogenase; Provisional
Probab=80.23 E-value=10 Score=33.78 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=26.2
Q ss_pred CceeEEEEeCChHHHHHHHHHHhHh---cCCCeEEE
Q 026513 160 EKYDVVIANILLNPLLQLADHIVSY---AKPGAVVG 192 (237)
Q Consensus 160 ~~fD~I~~n~~~~~~~~~l~~~~~~---L~~gG~li 192 (237)
..+|+|+...|.....+++.++... |+||..+.
T Consensus 50 ~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~iVt 85 (370)
T PRK08818 50 QRADVLIFSAPIRHTAALIEEYVALAGGRAAGQLWL 85 (370)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCeEEE
Confidence 3689999999999999999888876 67765443
No 462
>PRK07677 short chain dehydrogenase; Provisional
Probab=80.22 E-value=7.7 Score=31.87 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=36.6
Q ss_pred CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
|+++|-.|++.|. ++..+++.|. +|++++-++...+...+.+...+ . ++.++..|..+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~----~~~~~~~D~~~ 61 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP-G----QVLTVQMDVRN 61 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-C----cEEEEEecCCC
Confidence 4578888886662 3333445555 69999998877666555554333 1 36677788754
No 463
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=80.08 E-value=43 Score=29.84 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhhccCCCeEEEEcCcchH----HHHHHHHh----CCCeEEEEeC----CHHHHHHHHHHHH
Q 026513 55 ATTKLCLLLLRRLIKGGELFLDYGTGSGI----LGIAAIKF----GAAMSVGADI----DPQAIKSAHQNAA 114 (237)
Q Consensus 55 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~----~~~~la~~----~~~~v~~vD~----s~~~i~~a~~~~~ 114 (237)
...+.+++.+.. ...-.|+|+|.|.|. +-..++.. +.-+|||++. +...++.+.+++.
T Consensus 97 taNqaIleA~~g--~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~ 166 (374)
T PF03514_consen 97 TANQAILEAFEG--ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA 166 (374)
T ss_pred chhHHHHHHhcc--CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence 333444444432 234579999999993 44455543 2347999999 8888887777653
No 464
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.03 E-value=11 Score=28.35 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=27.9
Q ss_pred CCCeEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Q 026513 70 GGELFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQN 112 (237)
Q Consensus 70 ~~~~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~ 112 (237)
.+.+++-+|+|. | .....++..+...++.+|.++...+...+.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 467899999974 2 222333344556799999998776654443
No 465
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=79.98 E-value=4.9 Score=37.01 Aligned_cols=89 Identities=22% Similarity=0.229 Sum_probs=53.9
Q ss_pred cCCCeEEEEcCcc-hHHHHH-HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIA-AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~-la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
-.|++|+-+|+|. |..... +..+|. +|+.+|.++.....+.. .+. .+. ++.
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~----~G~-------~~~--~le------------- 304 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAM----EGY-------QVV--TLE------------- 304 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHh----cCc-------eec--cHH-------------
Confidence 3689999999997 332222 223444 69999998865433322 232 111 111
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHH-HHHhHhcCCCeEEEEeccC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLA-DHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l-~~~~~~L~~gG~liis~~~ 197 (237)
.. -...|+|++... ...++ ......+|||++|+-.+..
T Consensus 305 --------el--l~~ADIVI~atG---t~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 305 --------DV--VETADIFVTATG---NKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred --------HH--HhcCCEEEECCC---cccccCHHHHhccCCCcEEEEcCCC
Confidence 11 246899998653 23344 3677889999999987655
No 466
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.95 E-value=32 Score=31.04 Aligned_cols=92 Identities=12% Similarity=0.042 Sum_probs=50.5
Q ss_pred CCCeEEEEcCcchHHHHHHHH---hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 70 GGELFLDYGTGSGILGIAAIK---FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 70 ~~~~vLDlG~G~G~~~~~la~---~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
...+++=+|+|. ++..+++ .....++.+|.+++.++.+++.. .+ +.++.+|..+...
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~--~~-------~~~i~gd~~~~~~--------- 289 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL--PN-------TLVLHGDGTDQEL--------- 289 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC--CC-------CeEEECCCCCHHH---------
Confidence 456899888864 3333332 22456999999999887766532 11 4467788753210
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPG 188 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~g 188 (237)
+... .-.++|.|++..+-....-+...+.+.+.+.
T Consensus 290 ------L~~~-~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 290 ------LEEE-GIDEADAFIALTNDDEANILSSLLAKRLGAK 324 (453)
T ss_pred ------HHhc-CCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence 1011 1357888887554332222233334444554
No 467
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=79.91 E-value=12 Score=32.14 Aligned_cols=101 Identities=26% Similarity=0.394 Sum_probs=56.9
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+||-.|+|. |..+..+++. |...+++++-++...+.+++ .+... + +..+-.. .+
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~~----~--~~~~~~~---~~------ 217 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGADD----T--INPKEED---VE------ 217 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE----E--ecCcccc---HH------
Confidence 45788899988654 5555666654 55458999888877665532 23221 1 1111000 00
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+........+|+++..... ...+..+.+.|+++|.++..+.
T Consensus 218 ------~~~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 218 ------KVRELTEGRGADLVIEAAGS---PATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred ------HHHHHhCCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 01112223469999965422 2345667788899999887543
No 468
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=79.69 E-value=17 Score=31.73 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=55.2
Q ss_pred cCCCeEEEEcCc-chHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTG-SGILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G-~G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.++.+||-.|+| .|..+..+++. |...+++++.++...+.+++ .+... -+.....+..+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~~---v~~~~~~~~~~------------ 246 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGATH---TVNAAKEDAVA------------ 246 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCce---EecCCcccHHH------------
Confidence 567788877664 24455555554 55559999998877666543 23321 01110111100
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+.....+..+|+|+....-. ..+..+.+.|+++|.++..+
T Consensus 247 -----~l~~~~~~~~~d~vld~vg~~---~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 247 -----AIREITGGRGVDVVVEALGKP---ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred -----HHHHHhCCCCCCEEEEeCCCH---HHHHHHHHHHhcCCEEEEEc
Confidence 001112245699999654332 24566777889999988643
No 469
>PRK10083 putative oxidoreductase; Provisional
Probab=79.66 E-value=12 Score=32.14 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=32.0
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHH-h-CCCeEEEEeCCHHHHHHHHH
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIK-F-GAAMSVGADIDPQAIKSAHQ 111 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~-~-~~~~v~~vD~s~~~i~~a~~ 111 (237)
+.+|.+||-.|+|. |..++.+++ . |...++++|.++...+.+++
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 56788999999653 445555565 3 77779999999988777664
No 470
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=79.62 E-value=16 Score=31.68 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=55.4
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.++.+||-.|+|. |..+..+++ .|..+|++++.++...+.+++ .++.. -+.....+..+
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~~------------ 234 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGADV---VVNGSDPDAAK------------ 234 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCcE---EecCCCccHHH------------
Confidence 3678888887653 455555555 466689999998887766643 23321 01100001100
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+...... .+|+++...... ..+..+.+.|+++|.++.-+
T Consensus 235 -----~~~~~~~~-~~d~vid~~g~~---~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 235 -----RIIKAAGG-GVDAVIDFVNNS---ATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred -----HHHHHhCC-CCcEEEECCCCH---HHHHHHHHHhhcCCeEEEEC
Confidence 00111122 699999654321 23566778889999988643
No 471
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=79.58 E-value=16 Score=30.11 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=31.9
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+++|. ++..+++.|. +|+.++.+.. +...+.+...+. ++.++..|+.+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~-----~~~~~~~Dl~~ 66 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGR-----KFHFITADLIQ 66 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCC-----eEEEEEeCCCC
Confidence 47789999977662 3334445554 5777776542 222233332221 36677788764
No 472
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=79.49 E-value=11 Score=29.02 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=56.2
Q ss_pred EEEEcCcchHHHHH--HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCC--CCCcc--eEEeccCccccccccccccccccc
Q 026513 74 FLDYGTGSGILGIA--AIKFGAAMSVGADIDPQAIKSAHQNAALNNI--GPKKM--KLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 74 vLDlG~G~G~~~~~--la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~--~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
|.-+|+|++..+++ ++..| .+|+....+++.++..+++-. +.. ....+ .+.+ ..|..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~-n~~~~~~~~l~~~i~~-t~dl~-------------- 64 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQ-NPKYLPGIKLPENIKA-TTDLE-------------- 64 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTS-ETTTSTTSBEETTEEE-ESSHH--------------
T ss_pred EEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCC-CCCCCCCcccCccccc-ccCHH--------------
Confidence 66789998776654 33444 679999999988776665421 111 11000 0111 11111
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii 193 (237)
.. -...|+|+...|-...+.+++.+...++++-.+++
T Consensus 65 -------~a--~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 65 -------EA--LEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -------HH--HTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred -------HH--hCcccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 11 14679999999888889999999999987777776
No 473
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=79.41 E-value=6.4 Score=30.70 Aligned_cols=101 Identities=18% Similarity=0.213 Sum_probs=48.5
Q ss_pred HHHHHHHHhhccCCCeEEEEcCcchHHHHH-HHHhCCC-eEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccc
Q 026513 58 KLCLLLLRRLIKGGELFLDYGTGSGILGIA-AIKFGAA-MSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTA 135 (237)
Q Consensus 58 ~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~-la~~~~~-~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~ 135 (237)
..+.+.+......|++|.=.|+|....+.. +...... -.+.+|.++. ++.....| + .+-++.-+.
T Consensus 55 ~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~-----K~G~~~PG-t----~ipI~~p~~--- 121 (160)
T PF08484_consen 55 AELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL-----KQGKYLPG-T----HIPIVSPEE--- 121 (160)
T ss_dssp HHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG-----GTTEE-TT-T------EEEEGGG---
T ss_pred HHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh-----hcCcccCC-C----CCeECCHHH---
Confidence 334444444445789999999998766543 3333222 3568898882 21111111 1 122222221
Q ss_pred cccccccccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513 136 SMNERVDGVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii 193 (237)
+ ...+.|.|+..+ .....++.+.+...+..||.+++
T Consensus 122 --------------------l-~~~~pd~vivla-w~y~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 122 --------------------L-KERKPDYVIVLA-WNYKDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp -----------------------SS--SEEEES--GGGHHHHHHHTHHHHHTT-EEEE
T ss_pred --------------------H-hhCCCCEEEEcC-hhhHHHHHHHHHHHHhcCCEEEE
Confidence 1 145678887744 55667888999999999999987
No 474
>PRK07062 short chain dehydrogenase; Provisional
Probab=79.39 E-value=9.6 Score=31.50 Aligned_cols=61 Identities=20% Similarity=0.135 Sum_probs=38.2
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|++.|. ++..++..|. +|++++.++..++.+.+.+...... .++.++..|+.+
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~ 70 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPG---ARLLAARCDVLD 70 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCC---ceEEEEEecCCC
Confidence 46789999977652 3334445554 5899999987777665555433211 136677778764
No 475
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=79.07 E-value=5.7 Score=34.96 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=33.9
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHH
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQ 111 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~ 111 (237)
+++|.+||-.|+|. |..++.+++. |..+|+++|.++..++.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 56789999999864 5666666664 66579999999988887754
No 476
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.06 E-value=34 Score=29.05 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=56.1
Q ss_pred eEEEEcCcchH--HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHc--------CCCCCc------ceEEeccCcccccc
Q 026513 73 LFLDYGTGSGI--LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALN--------NIGPKK------MKLHLVPDRTFTAS 136 (237)
Q Consensus 73 ~vLDlG~G~G~--~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~--------~~~~~~------~~v~~~~~d~~~~~ 136 (237)
+|.-+|+|.-. ++..++..| .+|+.+|.+++.++.+++.+... .+.... -++.+ ..|..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~--- 79 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHG-FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLA--- 79 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHH---
Confidence 67888988643 333444554 46999999999988887654211 111000 00111 11110
Q ss_pred ccccccccccccccccccCCCCCCceeEEEEeCC--hHHHHHHHHHHhHhcCCCeEEEE
Q 026513 137 MNERVDGVVEDLSSHKIRGISQTEKYDVVIANIL--LNPLLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~n~~--~~~~~~~l~~~~~~L~~gG~lii 193 (237)
.. -...|+|+...+ ......+++.+...++++..+..
T Consensus 80 ------------------~a--~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 80 ------------------EA--VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred ------------------HH--hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 00 246799998877 34556778888888877765533
No 477
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=79.04 E-value=23 Score=29.64 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=51.5
Q ss_pred CCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 71 GELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 71 ~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
++.++--|.++|. .+..++..|. +|+++.=..+.++.....+.. . ++.....|+.+.. .+..+++.
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~---~----~~~~~~~DVtD~~---~~~~~i~~ 74 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGA---G----AALALALDVTDRA---AVEAAIEA 74 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhcc---C----ceEEEeeccCCHH---HHHHHHHH
Confidence 5678888998884 3445556655 589999998888876655443 1 3667777877531 12222222
Q ss_pred cccccccCCCCCCceeEEEEeCC
Q 026513 148 LSSHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~ 170 (237)
+ ...-++.|+++.|..
T Consensus 75 ~-------~~~~g~iDiLvNNAG 90 (246)
T COG4221 75 L-------PEEFGRIDILVNNAG 90 (246)
T ss_pred H-------HHhhCcccEEEecCC
Confidence 1 001258999999875
No 478
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=78.96 E-value=16 Score=31.30 Aligned_cols=100 Identities=19% Similarity=0.326 Sum_probs=54.5
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
..++.+||-.|+|. |..++.+++. |..++++++.++...+.+++ .+.. .+.....+...
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~----------- 225 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGAE----PINFEDAEPVE----------- 225 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCCe----EEecCCcCHHH-----------
Confidence 45678888887542 3444455544 54578999888766655543 2321 01111111100
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+........+|+++..... ...+....+.++++|.++..+
T Consensus 226 ------~l~~~~~~~~~dvvid~~~~---~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 226 ------RVREATEGRGADVVLEAVGG---AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred ------HHHHHhCCCCCCEEEECCCC---HHHHHHHHHhcccCCEEEEEC
Confidence 00111223569998865432 134566777889999988654
No 479
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=78.87 E-value=9.1 Score=33.53 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=54.2
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.+|.+|+-.|+|. |.+++.+++....++++++.++...+.+.+ ..+... + +...+..
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~---~~Ga~~----~-i~~~~~~-------------- 236 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALE---HLGADD----Y-LVSSDAA-------------- 236 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH---hcCCcE----E-ecCCChH--------------
Confidence 5788888887754 556666666533458888887765544432 233321 1 1111100
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.+... ...+|+++-.... ...+..+.+.++++|.++.-+..
T Consensus 237 ----~~~~~--~~~~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 237 ----EMQEA--ADSLDYIIDTVPV---FHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred ----HHHHh--cCCCcEEEECCCc---hHHHHHHHHHhccCCEEEEECCC
Confidence 00011 1258988865421 12445567789999999886543
No 480
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.80 E-value=19 Score=31.04 Aligned_cols=102 Identities=18% Similarity=0.281 Sum_probs=56.1
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
..+|.+|+-.|+|. |.....+++. |...+++++.++...+.+++ .+... -+.....+..+
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~~---v~~~~~~~~~~----------- 227 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGATD---IVAERGEEAVA----------- 227 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCce---EecCCcccHHH-----------
Confidence 45677777777653 4555555654 66669999988866555543 23221 01110111100
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+........+|+++....- ...+..+.+.++++|.++..+.
T Consensus 228 ------~i~~~~~~~~~d~il~~~g~---~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 228 ------RVRELTGGVGADAVLECVGT---QESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred ------HHHHhcCCCCCCEEEECCCC---HHHHHHHHHhhccCCEEEEecc
Confidence 01112224468999854321 2345667888899999887554
No 481
>PRK12744 short chain dehydrogenase; Provisional
Probab=78.76 E-value=27 Score=28.67 Aligned_cols=57 Identities=18% Similarity=0.129 Sum_probs=29.5
Q ss_pred CCeEEEEcCcchHHHHHHH----HhCCCeEEEEeCC----HHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 71 GELFLDYGTGSGILGIAAI----KFGAAMSVGADID----PQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~la----~~~~~~v~~vD~s----~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
++++|-.|+++| ++..++ ..|.. ++.++.+ ....+...+.+...+. ++.++..|+.+
T Consensus 8 ~k~vlItGa~~g-IG~~~a~~l~~~G~~-vv~i~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~D~~~ 72 (257)
T PRK12744 8 GKVVLIAGGAKN-LGGLIARDLAAQGAK-AVAIHYNSAASKADAEETVAAVKAAGA-----KAVAFQADLTT 72 (257)
T ss_pred CcEEEEECCCch-HHHHHHHHHHHCCCc-EEEEecCCccchHHHHHHHHHHHHhCC-----cEEEEecCcCC
Confidence 568898886554 444443 44544 5555432 2333333333333221 36677888764
No 482
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.75 E-value=17 Score=30.90 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=28.2
Q ss_pred eEEEEcCcc-h-HHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513 73 LFLDYGTGS-G-ILGIAAIKFGAAMSVGADIDPQAIKSAHQNA 113 (237)
Q Consensus 73 ~vLDlG~G~-G-~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~ 113 (237)
+|.-+|+|. | .++..++..|. +|+.+|.+++.++.+.+..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHH
Confidence 577788875 2 34444555554 5999999999998877653
No 483
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.67 E-value=11 Score=30.86 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=37.2
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|+++|. ++..++..|. +|++++.++...+...+.+...+. ++.++..|+.+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~D~~~ 65 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGR-----RALAVPTDITD 65 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCC-----ceEEEecCCCC
Confidence 46788888876552 3334445554 699999988776665555443332 26677888764
No 484
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.49 E-value=24 Score=29.17 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=30.8
Q ss_pred CCCeEEEEcCcc-hHHHHHH----HHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGS-GILGIAA----IKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~-G~~~~~l----a~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|.++ +.++..+ ++.|. +|+.++.+....+..++........ ++.++..|+.+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~Dv~d 70 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQ----ESLLLPCDVTS 70 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCC----ceEEEecCCCC
Confidence 467899999873 4444444 44554 5777765432212222222221111 36667788764
No 485
>PRK06940 short chain dehydrogenase; Provisional
Probab=78.49 E-value=26 Score=29.36 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=44.9
Q ss_pred CeEEEEcCcchHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 72 ELFLDYGTGSGILGIAAIKF--GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~la~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
+.+|-.|+ |.++..+++. ...+|+.+|.++..++...+.+...+. ++.++..|+.+.. .+..+++..
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~Dv~d~~---~i~~~~~~~- 71 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-----DVSTQEVDVSSRE---SVKALAATA- 71 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-----eEEEEEeecCCHH---HHHHHHHHH-
Confidence 35666665 3566655532 235799999988776655554443322 3667777876421 122222211
Q ss_pred cccccCCCCCCceeEEEEeCC
Q 026513 150 SHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~ 170 (237)
...++.|+++.|..
T Consensus 72 -------~~~g~id~li~nAG 85 (275)
T PRK06940 72 -------QTLGPVTGLVHTAG 85 (275)
T ss_pred -------HhcCCCCEEEECCC
Confidence 11246899998764
No 486
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=78.30 E-value=30 Score=29.48 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=55.5
Q ss_pred ccCCCeEEEEcCc-chHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 68 IKGGELFLDYGTG-SGILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 68 ~~~~~~vLDlG~G-~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.++.+||-.|+| .|..+..+++.-..++++++.++...+.+++ .+... +.....+..
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~~----~~~~~~~~~------------- 218 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK----LGADE----VVDSGAELD------------- 218 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hCCcE----EeccCCcch-------------
Confidence 4677889999886 4655556665533468999999987766643 12211 110000000
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
... ..+.+|+++..... ...+..+.+.|+++|.++..+
T Consensus 219 ------~~~--~~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 219 ------EQA--AAGGADVILVTVVS---GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ------HHh--ccCCCCEEEECCCc---HHHHHHHHHhcccCCEEEEEC
Confidence 001 12468998864321 124466677899999988754
No 487
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=78.30 E-value=6.2 Score=34.04 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=36.1
Q ss_pred cCCCeEEEEcCcchHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Q 026513 69 KGGELFLDYGTGSGILGIAAIKFGAAMSVGADIDPQAIKSAHQNA 113 (237)
Q Consensus 69 ~~~~~vLDlG~G~G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~ 113 (237)
..|.+|.-+|+|......++++.++ +|.++|+++..|..-+-.+
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHH
Confidence 5678999999998888888888755 4999999999988765544
No 488
>PRK07806 short chain dehydrogenase; Provisional
Probab=78.15 E-value=34 Score=27.74 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=30.5
Q ss_pred CCeEEEEcCcchHHHHH----HHHhCCCeEEEEeCCH-HHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 71 GELFLDYGTGSGILGIA----AIKFGAAMSVGADIDP-QAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~~----la~~~~~~v~~vD~s~-~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
++++|-.|++.| ++.. ++..|. +|++++-+. ...+.....+...+. ++.++.+|+.+
T Consensus 6 ~k~vlItGasgg-iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~-----~~~~~~~D~~~ 67 (248)
T PRK07806 6 GKTALVTGSSRG-IGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGG-----RASAVGADLTD 67 (248)
T ss_pred CcEEEEECCCCc-HHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCC-----ceEEEEcCCCC
Confidence 568898886544 3333 334454 577776653 233333333332221 26677788764
No 489
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=78.09 E-value=53 Score=29.69 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=61.5
Q ss_pred CeEEEEcCcchHHH--HHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 72 ELFLDYGTGSGILG--IAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 72 ~~vLDlG~G~G~~~--~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
++|.=+|.|.-... ..+++.| .+|+++|.++..++..+. +.. .+...+.. +.+.+.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~~~~~v~~l~~-----g~~------~~~e~~l~-----~~l~~~~~~-- 64 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVDINQHAVDTINR-----GEI------HIVEPDLD-----MVVKTAVEG-- 64 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC-CEEEEEeCCHHHHHHHHC-----CCC------CcCCCCHH-----HHHHHHhhc--
Confidence 35777888864333 3445555 569999999988775321 111 01111100 000000000
Q ss_pred cccccCCCCCCceeEEEEeCCh----------HHHHHHHHHHhHhcCCCeEEEEe-ccCCCCHHHHHHHHh
Q 026513 150 SHKIRGISQTEKYDVVIANILL----------NPLLQLADHIVSYAKPGAVVGIS-GILSEQLPHIINRYS 209 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~----------~~~~~~l~~~~~~L~~gG~liis-~~~~~~~~~~~~~~~ 209 (237)
-...........|+|+...+- ..+...++.+...+++|..+++. ++......++...+.
T Consensus 65 -g~l~~~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~ 134 (415)
T PRK11064 65 -GYLRATTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLA 134 (415)
T ss_pred -CceeeecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 000000112357899875553 45566778888899998877764 445455555555444
No 490
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=78.03 E-value=23 Score=31.33 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=53.8
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHHhCCCeEEEEeCCHHH-HHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIKFGAAMSVGADIDPQA-IKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~~~~~~v~~vD~s~~~-i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
++|.+|+-.|+|. |.+++.+++.-..++++++.+++. .+.++ ..+... + +...+..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~~----~-i~~~~~~------------- 234 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGADS----F-LVTTDSQ------------- 234 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCcE----E-EcCcCHH-------------
Confidence 4788999988864 566666666533458888887643 33332 234321 1 1001100
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEeccC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGIL 197 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~~ 197 (237)
.+.... +.+|+++-.... ...+....+.++++|.++..+..
T Consensus 235 -----~v~~~~--~~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~vG~~ 275 (375)
T PLN02178 235 -----KMKEAV--GTMDFIIDTVSA---EHALLPLFSLLKVSGKLVALGLP 275 (375)
T ss_pred -----HHHHhh--CCCcEEEECCCc---HHHHHHHHHhhcCCCEEEEEccC
Confidence 000111 258998864322 12345667789999999876553
No 491
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.03 E-value=11 Score=32.54 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=55.4
Q ss_pred cCCCeEEEEcCcc-hHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 69 KGGELFLDYGTGS-GILGIAAIKF-GAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 69 ~~~~~vLDlG~G~-G~~~~~la~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.+|.+||-.|+|. |..+..+++. |..++++++-++.-.+.+++ .+... -+.....+..
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~------------- 221 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADV---VINPREEDVV------------- 221 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcce---eeCcccccHH-------------
Confidence 5677888877653 5555666654 55478888777766655553 23211 0110011110
Q ss_pred ccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 147 DLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+......+.+|+++....- ...+..+.+.|+++|.++..+.
T Consensus 222 -----~~~~~~~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 222 -----EVKSVTDGTGVDVVLEMSGN---PKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred -----HHHHHcCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEEcc
Confidence 00112234579999976532 1234556778899999887543
No 492
>PRK05855 short chain dehydrogenase; Validated
Probab=77.95 E-value=19 Score=33.25 Aligned_cols=83 Identities=25% Similarity=0.269 Sum_probs=47.7
Q ss_pred CCeEEEEcCcchHHHH----HHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 71 GELFLDYGTGSGILGI----AAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 71 ~~~vLDlG~G~G~~~~----~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
+.++|-+|+.+| ++. .++..|. +|+.++-+...++...+.+...+. ++.++..|+.+... +..+++
T Consensus 315 ~~~~lv~G~s~g-iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~---~~~~~~ 384 (582)
T PRK05855 315 GKLVVVTGAGSG-IGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGA-----VAHAYRVDVSDADA---MEAFAE 384 (582)
T ss_pred CCEEEEECCcCH-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-----eEEEEEcCCCCHHH---HHHHHH
Confidence 456887776544 443 3444554 589999998777766555554442 36777888865321 111221
Q ss_pred ccccccccCCCCCCceeEEEEeCC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~ 170 (237)
.. ....++.|+++.|..
T Consensus 385 ~~-------~~~~g~id~lv~~Ag 401 (582)
T PRK05855 385 WV-------RAEHGVPDIVVNNAG 401 (582)
T ss_pred HH-------HHhcCCCcEEEECCc
Confidence 11 001246899998764
No 493
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.92 E-value=22 Score=32.11 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=51.9
Q ss_pred eEEEEcCcchHHHHHHHH---hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccccc
Q 026513 73 LFLDYGTGSGILGIAAIK---FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVEDLS 149 (237)
Q Consensus 73 ~vLDlG~G~G~~~~~la~---~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 149 (237)
+|+-+|+ |.++..+++ .....|+.+|.++..++.+++. .+ +.++.+|..+...
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~~-------~~~~~gd~~~~~~------------ 57 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---LD-------VRTVVGNGSSPDV------------ 57 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---cC-------EEEEEeCCCCHHH------------
Confidence 4666776 555555443 2245699999999887766542 12 5566777653210
Q ss_pred cccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEE
Q 026513 150 SHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGI 193 (237)
Q Consensus 150 ~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~lii 193 (237)
+... .-.++|.+++..+-......+....+.+.|.-.+++
T Consensus 58 ---l~~~-~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 58 ---LREA-GAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred ---HHHc-CCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 1111 124788888866544444444445555544444444
No 494
>PLN02702 L-idonate 5-dehydrogenase
Probab=77.65 E-value=19 Score=31.40 Aligned_cols=102 Identities=24% Similarity=0.308 Sum_probs=57.1
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEecc---Ccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVP---DRTFTASMNERVD 142 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~ 142 (237)
+.++.+||-.|+|. |..++.+++ .|...++++|.++...+.+++ .+... +.... .+..+
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~----~~~~~~~~~~~~~-------- 242 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGADE----IVLVSTNIEDVES-------- 242 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCE----EEecCcccccHHH--------
Confidence 45788888887652 455555554 466778999998877666553 23321 11111 11110
Q ss_pred ccccccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEec
Q 026513 143 GVVEDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISG 195 (237)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~ 195 (237)
.+. .+.. ...+.+|+|+....- ...+....+.|+++|.++..+
T Consensus 243 -~~~-----~~~~-~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 243 -EVE-----EIQK-AMGGGIDVSFDCVGF---NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred -HHH-----HHhh-hcCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence 000 0000 113468999865431 124566778899999988654
No 495
>PLN02256 arogenate dehydrogenase
Probab=77.48 E-value=29 Score=30.02 Aligned_cols=84 Identities=14% Similarity=0.039 Sum_probs=49.6
Q ss_pred CCCeEEEEcCcc--hHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccccc
Q 026513 70 GGELFLDYGTGS--GILGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVED 147 (237)
Q Consensus 70 ~~~~vLDlG~G~--G~~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 147 (237)
.+.+|.=+|+|. |.++..+.+.| .+|+++|.++. .+.+ ...++. . ..+..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~~~~-~~~a----~~~gv~-------~-~~~~~-------------- 86 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSRSDY-SDIA----AELGVS-------F-FRDPD-------------- 86 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECccH-HHHH----HHcCCe-------e-eCCHH--------------
Confidence 456899999875 34555555554 46999999863 2222 222321 1 11111
Q ss_pred cccccccCCCCCCceeEEEEeCChHHHHHHHHHH-hHhcCCCe
Q 026513 148 LSSHKIRGISQTEKYDVVIANILLNPLLQLADHI-VSYAKPGA 189 (237)
Q Consensus 148 ~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~-~~~L~~gG 189 (237)
... ....|+|+...+......++..+ ...++++.
T Consensus 87 -------e~~-~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~ 121 (304)
T PLN02256 87 -------DFC-EEHPDVVLLCTSILSTEAVLRSLPLQRLKRST 121 (304)
T ss_pred -------HHh-hCCCCEEEEecCHHHHHHHHHhhhhhccCCCC
Confidence 110 13579999887777777787777 55677775
No 496
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=77.35 E-value=25 Score=28.80 Aligned_cols=33 Identities=21% Similarity=0.072 Sum_probs=25.2
Q ss_pred CCeEEEEcCcc-hH-HHHHHHHhCCCeEEEEeCCH
Q 026513 71 GELFLDYGTGS-GI-LGIAAIKFGAAMSVGADIDP 103 (237)
Q Consensus 71 ~~~vLDlG~G~-G~-~~~~la~~~~~~v~~vD~s~ 103 (237)
..+|+-+|||. |. .+..|++.|..+++.+|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 56899999995 54 45567788999999986643
No 497
>PRK08589 short chain dehydrogenase; Validated
Probab=77.04 E-value=9.5 Score=31.87 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=34.1
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
.++++|-.|++.|. ++..++..| .+|++++.+ ..++...+.+...+. ++.++..|+.+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~r~-~~~~~~~~~~~~~~~-----~~~~~~~Dl~~ 65 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEG-AYVLAVDIA-EAVSETVDKIKSNGG-----KAKAYHVDISD 65 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCc-HHHHHHHHHHHhcCC-----eEEEEEeecCC
Confidence 36788888887662 333444555 568899988 444443333433321 36667777764
No 498
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=77.01 E-value=19 Score=31.12 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=54.8
Q ss_pred ccCCCeEEEEcCcc-hHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCccccccccccccccc
Q 026513 68 IKGGELFLDYGTGS-GILGIAAIK-FGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVV 145 (237)
Q Consensus 68 ~~~~~~vLDlG~G~-G~~~~~la~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 145 (237)
+.++.+||-.|+|. |..+..+++ .|...++++|.++...+.+++ .+... -+.....+..+
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~---v~~~~~~~~~~----------- 233 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK----FGADV---VLNPPEVDVVE----------- 233 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH----cCCcE---EecCCCcCHHH-----------
Confidence 45677777766643 444455554 466778899998877655543 23321 01100111110
Q ss_pred cccccccccCCCCCCceeEEEEeCChHHHHHHHHHHhHhcCCCeEEEEecc
Q 026513 146 EDLSSHKIRGISQTEKYDVVIANILLNPLLQLADHIVSYAKPGAVVGISGI 196 (237)
Q Consensus 146 ~~~~~~~~~~~~~~~~fD~I~~n~~~~~~~~~l~~~~~~L~~gG~liis~~ 196 (237)
.+........+|+++....-. ..+..+.+.++++|.++.-+.
T Consensus 234 ------~~~~~~~~~~vdvvld~~g~~---~~~~~~~~~l~~~G~~v~~g~ 275 (350)
T cd08256 234 ------KIKELTGGYGCDIYIEATGHP---SAVEQGLNMIRKLGRFVEFSV 275 (350)
T ss_pred ------HHHHHhCCCCCCEEEECCCCh---HHHHHHHHHhhcCCEEEEEcc
Confidence 001111234689998644311 234557778899999877543
No 499
>PRK07102 short chain dehydrogenase; Provisional
Probab=76.93 E-value=12 Score=30.56 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=34.6
Q ss_pred CeEEEEcCcchHHHHH----HHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccc
Q 026513 72 ELFLDYGTGSGILGIA----AIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFT 134 (237)
Q Consensus 72 ~~vLDlG~G~G~~~~~----la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~ 134 (237)
++++-.|+.. .++.. +++.| .+|++++.++...+...+.+...+-. ++.++.+|..+
T Consensus 2 ~~vlItGas~-giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~Dl~~ 62 (243)
T PRK07102 2 KKILIIGATS-DIARACARRYAAAG-ARLYLAARDVERLERLADDLRARGAV----AVSTHELDILD 62 (243)
T ss_pred cEEEEEcCCc-HHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhcCC----eEEEEecCCCC
Confidence 4678778554 44443 44445 46999999987765544444333222 37778888764
No 500
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.84 E-value=22 Score=30.43 Aligned_cols=87 Identities=21% Similarity=0.154 Sum_probs=53.4
Q ss_pred CCCeEEEEcCcchH---HHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHcCCCCCcceEEeccCcccccccccccccccc
Q 026513 70 GGELFLDYGTGSGI---LGIAAIKFGAAMSVGADIDPQAIKSAHQNAALNNIGPKKMKLHLVPDRTFTASMNERVDGVVE 146 (237)
Q Consensus 70 ~~~~vLDlG~G~G~---~~~~la~~~~~~v~~vD~s~~~i~~a~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 146 (237)
.|+.|+--||.+|+ ++..+++.|.. ++.+--..+.++...+.++..+-.. ++.++++|+.+..-. .+.++
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~-l~lvar~~rrl~~v~~~l~~~~~~~---~v~~~~~Dvs~~~~~---~~~~~ 83 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAK-LVLVARRARRLERVAEELRKLGSLE---KVLVLQLDVSDEESV---KKFVE 83 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCc-eEEeehhhhhHHHHHHHHHHhCCcC---ccEEEeCccCCHHHH---HHHHH
Confidence 47899999999994 45556666654 5666666667776655555444332 488889998753211 11111
Q ss_pred ccccccccCCCCCCceeEEEEeCC
Q 026513 147 DLSSHKIRGISQTEKYDVVIANIL 170 (237)
Q Consensus 147 ~~~~~~~~~~~~~~~fD~I~~n~~ 170 (237)
. ....-+..|+.+.|..
T Consensus 84 ~-------~~~~fg~vDvLVNNAG 100 (282)
T KOG1205|consen 84 W-------AIRHFGRVDVLVNNAG 100 (282)
T ss_pred H-------HHHhcCCCCEEEecCc
Confidence 0 0012368999999885
Done!