BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026514
         (237 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8NHR7|CO043_HUMAN Uncharacterized protein C15orf43 OS=Homo sapiens GN=C15orf43 PE=2
           SV=1
          Length = 220

 Score = 33.5 bits (75), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 77  QTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI------GLGSFLLKRPR 130
           Q+LDY++D  + + AY  +AV   K    VA  H FI     +       +GSF+ ++ +
Sbjct: 52  QSLDYIEDNATVFHAYYLSAVANAKIKNSVALGH-FILPPACLQKEIRRKIGSFIWEQDQ 110

Query: 131 HFL 133
           HFL
Sbjct: 111 HFL 113


>sp|Q21UD1|SECA_RHOFD Protein translocase subunit SecA OS=Rhodoferax ferrireducens
           (strain DSM 15236 / ATCC BAA-621 / T118) GN=secA PE=3
           SV=1
          Length = 921

 Score = 32.3 bits (72), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 8/68 (11%)

Query: 149 SRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRT---KLRQA-GKQIQGVINSA 204
           SR D ++KQ R+S+ R+ A   +LEK++    DE +RG+T   K R A G+ +  ++  A
Sbjct: 12  SRNDRQLKQYRKSVVRINAMEAELEKLS----DEALRGKTQEFKDRIAKGESLDALLPEA 67

Query: 205 YKIERQAA 212
           + + R+ +
Sbjct: 68  FAVVREGS 75


>sp|P15800|LAMB2_RAT Laminin subunit beta-2 OS=Rattus norvegicus GN=Lamb2 PE=2 SV=1
          Length = 1801

 Score = 31.2 bits (69), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 139  RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQ 198
            R+  +E+SL S A  + +QL   ++ LK +       A  AE+     +++ R+A KQ++
Sbjct: 1648 RMAGTEQSLNS-ASERARQLHALLEALKLKRAGNSLAASTAEETAGSAQSRAREAEKQLR 1706

Query: 199  GVINSAYKI-----ERQAAGL 214
              +   Y+      ER+A G+
Sbjct: 1707 EQVGDQYQTVRALAERKAEGV 1727


>sp|Q2M2T9|CO043_BOVIN Uncharacterized protein C15orf43 homolog OS=Bos taurus PE=2 SV=1
          Length = 221

 Score = 31.2 bits (69), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 77  QTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI------GLGSFLLKRPR 130
           Q+LDY++D  + + AY  +AV   +    VA  H FI    ++       +GSF+ ++ +
Sbjct: 52  QSLDYIEDNATVFHAYYLSAVANAEIKNSVALGH-FILPPASLQKEIRRKIGSFIWEQDQ 110

Query: 131 HFL 133
           HFL
Sbjct: 111 HFL 113


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.129    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,941,096
Number of Sequences: 539616
Number of extensions: 2684687
Number of successful extensions: 12534
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 12376
Number of HSP's gapped (non-prelim): 209
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)