Query 026514
Match_columns 237
No_of_seqs 31 out of 33
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 09:00:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05957 DUF883: Bacterial pro 97.8 0.0006 1.3E-08 52.0 11.0 83 40-125 5-87 (94)
2 PRK10404 hypothetical protein; 96.7 0.031 6.8E-07 44.5 10.8 81 41-125 13-94 (101)
3 PRK10132 hypothetical protein; 95.6 0.27 5.8E-06 39.8 10.9 61 57-125 36-100 (108)
4 COG4575 ElaB Uncharacterized c 94.5 0.53 1.1E-05 38.5 9.7 83 36-125 11-97 (104)
5 PF04156 IncA: IncA protein; 92.7 5.2 0.00011 33.3 13.2 105 111-215 38-150 (191)
6 PF06008 Laminin_I: Laminin Do 91.2 5.7 0.00012 35.2 12.3 111 124-234 14-133 (264)
7 PRK11637 AmiB activator; Provi 91.1 4.8 0.00011 38.0 12.4 60 148-207 77-136 (428)
8 PRK09039 hypothetical protein; 87.2 26 0.00057 32.9 19.6 154 43-215 41-200 (343)
9 PF09769 ApoO: Apolipoprotein 86.0 1.8 4E-05 35.8 5.3 73 63-139 46-127 (158)
10 COG1579 Zn-ribbon protein, pos 85.1 8.8 0.00019 35.2 9.6 85 134-221 29-115 (239)
11 PRK10132 hypothetical protein; 84.7 11 0.00024 30.6 9.0 65 57-128 43-107 (108)
12 PF00261 Tropomyosin: Tropomyo 81.9 16 0.00035 32.2 9.7 62 146-207 106-167 (237)
13 PF11559 ADIP: Afadin- and alp 80.6 30 0.00064 28.2 11.4 52 153-204 59-110 (151)
14 PRK08475 F0F1 ATP synthase sub 78.8 39 0.00084 28.5 13.7 76 96-171 3-81 (167)
15 PRK04654 sec-independent trans 78.8 21 0.00045 32.6 9.5 78 122-203 15-97 (214)
16 PRK11637 AmiB activator; Provi 78.1 21 0.00046 33.8 9.9 10 110-119 21-30 (428)
17 COG4942 Membrane-bound metallo 78.0 44 0.00094 33.2 12.1 78 140-225 33-110 (420)
18 KOG1962 B-cell receptor-associ 77.7 21 0.00046 32.4 9.3 92 137-234 119-210 (216)
19 PRK08476 F0F1 ATP synthase sub 76.9 40 0.00087 27.7 12.3 54 120-173 15-68 (141)
20 PRK14160 heat shock protein Gr 73.6 36 0.00078 30.7 9.6 75 143-224 51-127 (211)
21 PRK14161 heat shock protein Gr 73.2 37 0.00081 29.6 9.3 75 142-223 8-84 (178)
22 PF10805 DUF2730: Protein of u 72.9 45 0.00098 26.4 9.2 64 110-176 9-74 (106)
23 PF05700 BCAS2: Breast carcino 71.6 71 0.0015 28.1 10.9 63 143-215 140-202 (221)
24 PF04156 IncA: IncA protein; 71.2 59 0.0013 27.0 11.9 94 115-208 49-150 (191)
25 PF12072 DUF3552: Domain of un 69.3 76 0.0016 27.5 13.1 46 113-162 8-54 (201)
26 TIGR03185 DNA_S_dndD DNA sulfu 68.8 96 0.0021 31.2 12.3 111 79-196 136-259 (650)
27 TIGR02680 conserved hypothetic 67.5 2.1E+02 0.0045 31.9 17.4 48 172-219 345-392 (1353)
28 PRK14148 heat shock protein Gr 66.0 39 0.00085 30.0 8.1 62 162-223 42-105 (195)
29 PRK00888 ftsB cell division pr 65.0 38 0.00082 27.0 7.1 26 148-173 36-61 (105)
30 PF10146 zf-C4H2: Zinc finger- 64.3 1.1E+02 0.0025 27.7 11.0 49 133-181 12-60 (230)
31 PRK13460 F0F1 ATP synthase sub 61.9 95 0.0021 26.0 10.5 61 110-171 15-75 (173)
32 PRK14471 F0F1 ATP synthase sub 61.9 90 0.002 25.7 11.6 52 120-171 16-67 (164)
33 KOG0978 E3 ubiquitin ligase in 61.8 2.2E+02 0.0048 30.2 16.8 46 190-236 260-305 (698)
34 PF06005 DUF904: Protein of un 60.8 71 0.0015 24.2 9.7 66 147-219 5-70 (72)
35 TIGR02977 phageshock_pspA phag 59.6 82 0.0018 27.5 8.9 71 148-221 47-125 (219)
36 COG1579 Zn-ribbon protein, pos 59.4 81 0.0017 29.0 9.1 73 148-221 47-122 (239)
37 PF12718 Tropomyosin_1: Tropom 59.1 1.1E+02 0.0023 25.6 10.2 45 172-216 78-122 (143)
38 PRK06568 F0F1 ATP synthase sub 58.2 1.2E+02 0.0026 26.0 13.9 45 129-173 21-65 (154)
39 CHL00118 atpG ATP synthase CF0 55.0 1.2E+02 0.0026 25.0 11.1 58 114-171 24-81 (156)
40 PF10337 DUF2422: Protein of u 54.4 2.1E+02 0.0045 27.5 11.3 98 112-209 199-314 (459)
41 PF12777 MT: Microtubule-bindi 53.7 1.1E+02 0.0025 28.4 9.3 106 97-202 172-291 (344)
42 PRK14154 heat shock protein Gr 53.7 67 0.0015 28.9 7.5 18 205-222 99-116 (208)
43 cd01056 Euk_Ferritin eukaryoti 53.5 1.2E+02 0.0027 24.8 8.9 62 35-107 84-146 (161)
44 PF10168 Nup88: Nuclear pore c 51.8 54 0.0012 34.2 7.4 63 148-210 641-714 (717)
45 PF06103 DUF948: Bacterial pro 51.8 99 0.0021 23.1 10.9 60 145-204 25-84 (90)
46 PF10112 Halogen_Hydrol: 5-bro 51.7 68 0.0015 27.3 6.9 21 202-222 101-121 (199)
47 PRK15178 Vi polysaccharide exp 51.2 1E+02 0.0022 30.7 8.8 77 145-221 222-305 (434)
48 PRK15022 ferritin-like protein 51.2 1.2E+02 0.0026 26.2 8.4 66 35-111 83-148 (167)
49 PF12777 MT: Microtubule-bindi 51.0 51 0.0011 30.7 6.5 77 138-214 234-310 (344)
50 PF08898 DUF1843: Domain of un 49.5 29 0.00063 25.5 3.7 31 145-175 20-53 (53)
51 PRK07353 F0F1 ATP synthase sub 48.8 1.4E+02 0.0029 23.8 11.0 57 115-171 8-64 (140)
52 PF04632 FUSC: Fusaric acid re 48.7 1.4E+02 0.003 29.2 9.3 106 113-222 137-243 (650)
53 PRK13454 F0F1 ATP synthase sub 48.2 1.7E+02 0.0038 24.9 10.4 50 122-171 41-90 (181)
54 PRK14140 heat shock protein Gr 48.0 1E+02 0.0022 27.3 7.6 18 204-221 83-100 (191)
55 TIGR02168 SMC_prok_B chromosom 47.7 1.8E+02 0.0039 29.8 10.2 6 228-233 969-974 (1179)
56 PRK14139 heat shock protein Gr 47.4 1.2E+02 0.0027 26.7 8.0 65 151-222 30-96 (185)
57 PRK14153 heat shock protein Gr 47.4 1.1E+02 0.0024 27.3 7.7 65 152-223 32-98 (194)
58 PF11727 ISG65-75: Invariant s 47.0 2.2E+02 0.0048 26.0 9.9 80 132-211 59-140 (286)
59 PF10046 BLOC1_2: Biogenesis o 46.9 1.4E+02 0.003 23.3 10.6 72 145-220 27-98 (99)
60 PF11382 DUF3186: Protein of u 46.6 82 0.0018 29.2 7.1 52 113-177 12-63 (308)
61 PF11657 Activator-TraM: Trans 46.3 1.9E+02 0.0041 24.8 9.3 28 97-124 112-139 (144)
62 PRK14472 F0F1 ATP synthase sub 46.2 1.8E+02 0.0038 24.4 11.7 49 123-171 29-77 (175)
63 PRK05759 F0F1 ATP synthase sub 46.1 1.6E+02 0.0034 23.8 11.3 54 118-171 10-63 (156)
64 PRK14158 heat shock protein Gr 46.0 1.3E+02 0.0029 26.7 8.0 59 165-223 45-105 (194)
65 PF06109 HlyE: Haemolysin E (H 44.8 1.7E+02 0.0038 27.3 8.8 71 47-119 11-88 (299)
66 KOG4431 Uncharacterized protei 44.6 17 0.00037 29.7 2.1 26 98-126 20-45 (100)
67 PF14235 DUF4337: Domain of un 44.6 66 0.0014 27.5 5.7 60 148-207 68-132 (157)
68 PRK14145 heat shock protein Gr 43.9 1.6E+02 0.0034 26.3 8.2 63 162-224 47-111 (196)
69 PRK14162 heat shock protein Gr 43.9 1.4E+02 0.0029 26.6 7.8 62 155-223 41-104 (194)
70 KOG3564 GTPase-activating prot 43.5 2.1E+02 0.0046 29.7 9.8 82 136-219 20-108 (604)
71 PRK00888 ftsB cell division pr 42.3 1E+02 0.0022 24.5 6.2 59 117-175 11-70 (105)
72 PRK11677 hypothetical protein; 42.1 90 0.0019 26.3 6.1 59 113-176 8-66 (134)
73 PF15456 Uds1: Up-regulated Du 41.8 1E+02 0.0022 25.5 6.3 40 160-200 22-61 (124)
74 PRK13453 F0F1 ATP synthase sub 41.5 2.1E+02 0.0047 24.0 11.3 59 113-171 19-77 (173)
75 PF12329 TMF_DNA_bd: TATA elem 41.4 1.5E+02 0.0033 22.3 9.6 69 151-219 3-71 (74)
76 TIGR03513 GldL_gliding gliding 41.1 2.8E+02 0.006 25.2 10.2 75 156-236 106-184 (202)
77 PF12758 DUF3813: Protein of u 41.0 50 0.0011 25.1 3.9 48 37-85 11-62 (63)
78 PRK14146 heat shock protein Gr 40.9 1.5E+02 0.0031 26.8 7.6 56 168-223 62-119 (215)
79 PF02646 RmuC: RmuC family; I 40.9 2.3E+02 0.0049 26.2 9.0 58 162-219 8-65 (304)
80 PF09969 DUF2203: Uncharacteri 40.6 95 0.0021 25.4 5.9 43 182-224 44-86 (120)
81 PRK05431 seryl-tRNA synthetase 40.1 2.4E+02 0.0052 27.3 9.4 75 148-225 30-110 (425)
82 PRK14143 heat shock protein Gr 39.7 2.2E+02 0.0048 26.0 8.7 64 154-224 68-133 (238)
83 PRK15422 septal ring assembly 39.6 1.9E+02 0.0041 22.9 8.1 69 147-218 5-76 (79)
84 PRK14156 heat shock protein Gr 39.0 1.4E+02 0.0031 26.1 7.1 52 172-223 39-92 (177)
85 PRK04863 mukB cell division pr 39.0 3.7E+02 0.008 30.8 11.7 92 112-204 262-364 (1486)
86 COG3883 Uncharacterized protei 38.8 3.4E+02 0.0074 25.5 10.8 77 128-204 19-96 (265)
87 TIGR02168 SMC_prok_B chromosom 38.5 4E+02 0.0088 27.3 11.1 18 73-90 179-196 (1179)
88 KOG0999 Microtubule-associated 38.3 1.7E+02 0.0038 30.9 8.5 79 142-227 89-167 (772)
89 COG4942 Membrane-bound metallo 37.5 2.6E+02 0.0056 28.0 9.3 73 139-211 38-110 (420)
90 PF14817 HAUS5: HAUS augmin-li 37.2 2.7E+02 0.0059 29.0 9.7 46 150-195 83-128 (632)
91 PF04100 Vps53_N: Vps53-like, 37.0 1.8E+02 0.0039 27.9 8.0 71 139-213 12-82 (383)
92 KOG2629 Peroxisomal membrane a 37.0 3.9E+02 0.0085 25.7 11.7 75 121-195 96-171 (300)
93 KOG2412 Nuclear-export-signal 36.9 1.3E+02 0.0029 31.2 7.4 73 58-130 340-422 (591)
94 PRK10404 hypothetical protein; 36.7 2.2E+02 0.0048 22.7 10.1 65 57-128 36-101 (101)
95 PF11932 DUF3450: Protein of u 36.2 3.1E+02 0.0066 24.3 11.2 6 220-225 121-126 (251)
96 PRK14150 heat shock protein Gr 36.0 2.4E+02 0.0051 24.8 8.0 43 181-223 59-103 (193)
97 PF04977 DivIC: Septum formati 35.8 95 0.0021 21.9 4.6 32 141-172 19-50 (80)
98 PRK14151 heat shock protein Gr 35.3 2.1E+02 0.0046 24.9 7.5 61 156-223 23-85 (176)
99 PRK14147 heat shock protein Gr 35.2 2E+02 0.0044 24.9 7.3 59 158-223 23-83 (172)
100 PRK14155 heat shock protein Gr 34.9 1.8E+02 0.004 26.1 7.2 62 155-223 15-78 (208)
101 COG4026 Uncharacterized protei 34.6 3.8E+02 0.0083 25.4 9.4 71 150-220 132-202 (290)
102 PF02185 HR1: Hr1 repeat; Int 34.3 1.5E+02 0.0033 21.4 5.5 35 141-175 27-62 (70)
103 PRK14474 F0F1 ATP synthase sub 34.2 3.5E+02 0.0077 24.4 12.6 57 115-171 8-75 (250)
104 cd00632 Prefoldin_beta Prefold 34.0 2.2E+02 0.0048 22.0 11.2 35 73-107 6-42 (105)
105 PF00430 ATP-synt_B: ATP synth 34.0 2.2E+02 0.0047 21.9 9.1 89 130-221 17-118 (132)
106 PRK03918 chromosome segregatio 33.8 4.9E+02 0.011 26.6 10.8 25 196-220 253-277 (880)
107 PRK10698 phage shock protein P 33.3 3.5E+02 0.0075 24.0 8.9 72 147-221 46-125 (222)
108 PRK02195 V-type ATP synthase s 33.0 2.5E+02 0.0054 24.7 7.6 57 26-98 109-165 (201)
109 PF05667 DUF812: Protein of un 33.0 4.3E+02 0.0093 27.3 10.3 80 145-224 400-483 (594)
110 PF06295 DUF1043: Protein of u 32.9 1.5E+02 0.0033 24.1 6.0 44 51-94 28-71 (128)
111 PRK14163 heat shock protein Gr 32.8 2.4E+02 0.0053 25.6 7.7 63 155-224 42-106 (214)
112 PRK00708 sec-independent trans 32.6 3.9E+02 0.0084 24.3 10.3 23 120-142 13-36 (209)
113 KOG0250 DNA repair protein RAD 32.5 3.1E+02 0.0066 30.7 9.5 56 166-221 371-427 (1074)
114 PRK14141 heat shock protein Gr 32.3 2.2E+02 0.0047 25.7 7.3 19 204-222 77-95 (209)
115 PRK11677 hypothetical protein; 32.1 1.3E+02 0.0028 25.4 5.5 42 51-92 32-73 (134)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 32.0 2.7E+02 0.006 22.5 11.2 67 148-214 12-78 (132)
117 TIGR01069 mutS2 MutS2 family p 31.4 4.1E+02 0.0089 28.0 10.1 59 159-220 531-590 (771)
118 PRK00409 recombination and DNA 31.2 5.7E+02 0.012 27.0 11.1 13 208-220 583-595 (782)
119 PF09730 BicD: Microtubule-ass 31.2 3.5E+02 0.0076 28.8 9.5 73 145-220 358-430 (717)
120 KOG4154 Arginine-rich protein 30.8 48 0.001 29.1 2.8 31 112-142 7-43 (178)
121 cd00089 HR1 Protein kinase C-r 30.8 99 0.0021 22.5 4.1 28 147-174 43-70 (72)
122 PF13815 Dzip-like_N: Iguana/D 30.8 2.8E+02 0.006 22.1 8.3 54 147-200 60-113 (118)
123 TIGR00984 3a0801s03tim44 mitoc 30.3 2.4E+02 0.0052 27.7 7.7 56 152-207 7-75 (378)
124 smart00435 TOPEUc DNA Topoisom 30.2 3.5E+02 0.0075 26.9 8.8 29 191-220 339-367 (391)
125 KOG3501 Molecular chaperone Pr 30.2 3.3E+02 0.0072 22.9 7.5 42 142-183 63-104 (114)
126 PF05957 DUF883: Bacterial pro 29.8 2.5E+02 0.0053 21.2 11.0 79 44-128 16-94 (94)
127 PF15136 UPF0449: Uncharacteri 29.6 97 0.0021 25.2 4.2 31 173-203 66-96 (97)
128 PF06009 Laminin_II: Laminin D 29.6 18 0.00039 29.6 0.0 72 151-222 8-79 (138)
129 PF08285 DPM3: Dolichol-phosph 29.5 46 0.001 26.3 2.3 25 147-171 62-86 (91)
130 PF11559 ADIP: Afadin- and alp 29.4 3.1E+02 0.0067 22.3 10.8 120 97-219 14-150 (151)
131 PF05384 DegS: Sensor protein 29.3 3.8E+02 0.0082 23.2 9.4 64 143-206 14-84 (159)
132 COG1196 Smc Chromosome segrega 29.1 4.6E+02 0.01 28.6 10.2 77 145-221 841-917 (1163)
133 PF04799 Fzo_mitofusin: fzo-li 29.0 4.1E+02 0.0089 23.5 8.5 45 150-202 117-161 (171)
134 PRK06285 chorismate mutase; Pr 29.0 1.4E+02 0.003 23.0 4.9 33 150-182 4-37 (96)
135 PF07246 Phlebovirus_NSM: Phle 28.7 2.3E+02 0.0051 26.7 7.1 55 135-193 188-242 (264)
136 KOG2307 Low density lipoprotei 28.7 6.1E+02 0.013 27.0 10.5 76 146-225 82-160 (705)
137 PRK12779 putative bifunctional 28.6 2.5E+02 0.0054 30.2 8.1 90 51-140 16-113 (944)
138 PRK14475 F0F1 ATP synthase sub 28.5 3.5E+02 0.0076 22.6 12.7 59 130-188 28-98 (167)
139 PF13997 YqjK: YqjK-like prote 28.5 58 0.0013 24.5 2.6 29 102-133 31-59 (73)
140 PF06717 DUF1202: Protein of u 28.4 1.3E+02 0.0028 29.0 5.4 45 145-189 137-181 (308)
141 PF05557 MAD: Mitotic checkpoi 27.9 3.8E+02 0.0083 27.5 9.0 36 150-185 500-535 (722)
142 PRK14157 heat shock protein Gr 27.8 2.9E+02 0.0063 25.4 7.4 29 147-175 85-113 (227)
143 TIGR00998 8a0101 efflux pump m 27.8 4.3E+02 0.0094 23.4 8.8 22 164-185 112-133 (334)
144 PF05055 DUF677: Protein of un 27.2 5.7E+02 0.012 24.5 17.9 31 71-101 144-174 (336)
145 COG2433 Uncharacterized conser 26.9 7.9E+02 0.017 26.1 14.0 26 69-97 337-362 (652)
146 PF04588 HIG_1_N: Hypoxia indu 26.8 42 0.00092 23.7 1.5 19 107-125 1-19 (54)
147 PRK14144 heat shock protein Gr 26.4 3.9E+02 0.0085 24.0 7.8 20 204-223 91-110 (199)
148 CHL00019 atpF ATP synthase CF0 26.2 4E+02 0.0087 22.5 11.6 52 120-171 32-83 (184)
149 COG1394 NtpD Archaeal/vacuolar 25.9 3.3E+02 0.0072 24.7 7.3 61 29-105 120-180 (211)
150 PRK03918 chromosome segregatio 25.5 6.9E+02 0.015 25.5 10.3 12 133-144 589-600 (880)
151 PRK10304 ferritin; Provisional 25.4 4.2E+02 0.009 22.4 8.6 37 35-75 83-119 (165)
152 TIGR01144 ATP_synt_b ATP synth 25.1 3.6E+02 0.0077 21.5 11.6 43 129-171 12-54 (147)
153 PF13805 Pil1: Eisosome compon 25.1 5.1E+02 0.011 24.4 8.6 63 133-202 125-193 (271)
154 PF04375 HemX: HemX; InterPro 24.9 6E+02 0.013 24.1 10.8 27 196-222 94-120 (372)
155 KOG0994 Extracellular matrix g 24.9 1.2E+03 0.025 27.4 21.1 193 29-223 1404-1626(1758)
156 COG2882 FliJ Flagellar biosynt 24.7 3E+02 0.0066 23.6 6.6 52 54-109 15-66 (148)
157 PRK09343 prefoldin subunit bet 24.6 3.3E+02 0.0072 22.0 6.5 24 183-206 94-117 (121)
158 TIGR00414 serS seryl-tRNA synt 24.4 6.6E+02 0.014 24.3 11.1 77 148-224 32-112 (418)
159 PF00038 Filament: Intermediat 24.2 4.7E+02 0.01 23.3 8.0 62 165-226 193-254 (312)
160 KOG1655 Protein involved in va 24.0 2.6E+02 0.0057 25.8 6.3 55 148-207 99-155 (218)
161 PF11157 DUF2937: Protein of u 23.3 3.2E+02 0.0069 23.5 6.5 91 45-142 28-126 (167)
162 PRK09465 tolC outer membrane c 23.1 5.9E+02 0.013 23.3 11.0 72 157-228 353-431 (446)
163 PF12732 YtxH: YtxH-like prote 22.7 3.1E+02 0.0067 20.0 9.2 23 149-171 29-51 (74)
164 PF00261 Tropomyosin: Tropomyo 22.6 5.4E+02 0.012 22.7 11.6 134 72-218 63-213 (237)
165 PLN02829 Probable galacturonos 22.5 2.6E+02 0.0056 29.5 6.7 92 93-185 181-279 (639)
166 TIGR00309 V_ATPase_subD H(+)-t 22.5 5.2E+02 0.011 22.5 8.0 64 26-105 119-182 (209)
167 TIGR03321 alt_F1F0_F0_B altern 22.2 5.5E+02 0.012 22.7 11.0 49 120-168 13-61 (246)
168 PF12709 Kinetocho_Slk19: Cent 22.2 3.3E+02 0.0072 21.8 5.9 32 151-182 47-78 (87)
169 PF02388 FemAB: FemAB family; 22.1 4.2E+02 0.009 25.3 7.6 55 151-209 240-294 (406)
170 PF02403 Seryl_tRNA_N: Seryl-t 22.1 3.6E+02 0.0079 20.5 8.6 64 149-215 32-101 (108)
171 PF10146 zf-C4H2: Zinc finger- 22.0 6E+02 0.013 23.1 12.4 73 135-207 21-93 (230)
172 PF13600 DUF4140: N-terminal d 21.8 2.5E+02 0.0053 21.3 5.0 32 152-183 69-100 (104)
173 PF01025 GrpE: GrpE; InterPro 21.8 94 0.002 25.3 2.9 29 148-176 20-48 (165)
174 KOG0243 Kinesin-like protein [ 21.7 9.9E+02 0.022 26.8 11.0 33 143-175 438-470 (1041)
175 KOG0977 Nuclear envelope prote 21.6 7.5E+02 0.016 25.6 9.7 89 147-236 100-188 (546)
176 PF06698 DUF1192: Protein of u 21.6 1.5E+02 0.0032 22.0 3.6 21 154-174 22-42 (59)
177 PF09766 FimP: Fms-interacting 21.5 4.6E+02 0.01 24.9 7.7 61 137-201 92-152 (355)
178 PLN03098 LPA1 LOW PSII ACCUMUL 21.5 6.4E+02 0.014 25.5 8.9 26 31-56 73-98 (453)
179 PF03904 DUF334: Domain of unk 21.4 6.7E+02 0.015 23.4 9.4 70 143-218 33-102 (230)
180 PF09730 BicD: Microtubule-ass 21.2 6.7E+02 0.014 26.8 9.4 81 141-228 15-95 (717)
181 PRK00409 recombination and DNA 20.9 9.4E+02 0.02 25.4 10.4 19 188-206 577-595 (782)
182 cd00584 Prefoldin_alpha Prefol 20.8 3.2E+02 0.0069 21.5 5.6 37 148-184 89-125 (129)
183 PRK07857 hypothetical protein; 20.8 2E+02 0.0044 23.5 4.5 30 152-181 27-57 (106)
184 cd00890 Prefoldin Prefoldin is 20.7 3.9E+02 0.0085 20.4 6.7 40 144-183 85-124 (129)
185 PRK14473 F0F1 ATP synthase sub 20.6 4.8E+02 0.01 21.4 12.6 51 121-171 17-67 (164)
186 TIGR02894 DNA_bind_RsfA transc 20.2 3.1E+02 0.0067 24.2 5.8 35 150-184 108-142 (161)
187 PF06305 DUF1049: Protein of u 20.1 1.1E+02 0.0025 21.3 2.7 11 115-125 28-38 (68)
188 PRK11530 hypothetical protein; 20.0 1.9E+02 0.0042 26.0 4.6 35 147-181 16-52 (183)
No 1
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=97.76 E-value=0.0006 Score=51.96 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHH
Q 026514 40 QQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAI 119 (237)
Q Consensus 40 ~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A~shP~~a~g~a~ 119 (237)
++..-+..-+.+-++++-+.+.....++++.-..++.++.+.+.++..+.+.--.... ...-..+++||+-+.|+|+
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~V~e~P~~svgiAa 81 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAA---EQTEDYVRENPWQSVGIAA 81 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHChHHHHHHHH
Confidence 3444566677777777777777888888888888888777777766555433322222 2234567899999999999
Q ss_pred HHHHhh
Q 026514 120 GLGSFL 125 (237)
Q Consensus 120 ~aglll 125 (237)
++|||+
T Consensus 82 gvG~ll 87 (94)
T PF05957_consen 82 GVGFLL 87 (94)
T ss_pred HHHHHH
Confidence 999986
No 2
>PRK10404 hypothetical protein; Provisional
Probab=96.71 E-value=0.031 Score=44.51 Aligned_cols=81 Identities=12% Similarity=0.201 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHhhhChhhHHHHHH
Q 026514 41 QVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAA-YEDAAVGKVKEGIHVAASHPFITAGGAI 119 (237)
Q Consensus 41 qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~-yEd~~f~kiKegv~~A~shP~~a~g~a~ 119 (237)
.-..+-.++.+-..++-+.+.....++|+....++..+++.|.++...+.. +.+ .+...-.++++||+-++|+++
T Consensus 13 dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~----aa~~td~yV~e~Pw~avGiaa 88 (101)
T PRK10404 13 DLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQ----AVYRADDYVHEKPWQGIGVGA 88 (101)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHhCcHHHHHHHH
Confidence 334455555555555666677777778888888888888777766554322 111 122234667889999999999
Q ss_pred HHHHhh
Q 026514 120 GLGSFL 125 (237)
Q Consensus 120 ~aglll 125 (237)
++|||+
T Consensus 89 gvGlll 94 (101)
T PRK10404 89 AVGLVL 94 (101)
T ss_pred HHHHHH
Confidence 999875
No 3
>PRK10132 hypothetical protein; Provisional
Probab=95.56 E-value=0.27 Score=39.76 Aligned_cols=61 Identities=13% Similarity=0.228 Sum_probs=36.3
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHhhhChhhHHHHHHHHHHhh
Q 026514 57 IEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEG----IHVAASHPFITAGGAIGLGSFL 125 (237)
Q Consensus 57 i~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKeg----v~~A~shP~~a~g~a~~aglll 125 (237)
-+.+.....++|+.-...+..+.+.|.+...- ..+.|+. -..+++||.-++|+++++|||+
T Consensus 36 ~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~--------~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~ll 100 (108)
T PRK10132 36 GSDAKGEAEAARRKAQALLKETRARMHGRTRV--------QQAARDAVGCADTFVRERPWCSVGTAAAVGIFI 100 (108)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 33444444556666666666666555543321 1222333 3456789999999999988875
No 4
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.53 Score=38.50 Aligned_cols=83 Identities=22% Similarity=0.282 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH----HhhhCh
Q 026514 36 DNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH----VAASHP 111 (237)
Q Consensus 36 ~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~----~A~shP 111 (237)
+..+.--+.|--++++-.++.=..|.-...+||..--+-+..+++-+.+.. |.+....|+.+. ++.+||
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~-------d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG-------DAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHcCC
Confidence 444444444445555555555555666666787776666666666665554 555556666654 568899
Q ss_pred hhHHHHHHHHHHhh
Q 026514 112 FITAGGAIGLGSFL 125 (237)
Q Consensus 112 ~~a~g~a~~aglll 125 (237)
.=++|+++++|||+
T Consensus 84 Wq~VGvaAaVGlll 97 (104)
T COG4575 84 WQGVGVAAAVGLLL 97 (104)
T ss_pred chHHHHHHHHHHHH
Confidence 99999999999875
No 5
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.69 E-value=5.2 Score=33.33 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHhhccCchhHHHHHhhh-hhcCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 111 PFITAGGAIGLGSFLLKRPRHFLYYNTLR-LFASE-------ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182 (237)
Q Consensus 111 P~~a~g~a~~aglllLr~PRRfLyr~Tlg-rF~SE-------Eall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E 182 (237)
+.+.+++.+++|++++-.-=.++...... ..+.+ +.-+...+....++...++.+.+....+......-+++
T Consensus 38 s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 38 SFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666665554444333221 11111 11344444445555555555555555544444444555
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 026514 183 LIRGRTKLRQAGKQIQGVINSAYKIERQAAGLK 215 (237)
Q Consensus 183 ~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~ 215 (237)
+...+..++.....++.+-.....+++....|.
T Consensus 118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 118 LQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666666666665
No 6
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.19 E-value=5.7 Score=35.23 Aligned_cols=111 Identities=14% Similarity=0.208 Sum_probs=83.9
Q ss_pred hhccCchhHHH---------HHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 026514 124 FLLKRPRHFLY---------YNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAG 194 (237)
Q Consensus 124 llLr~PRRfLy---------r~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag 194 (237)
..+|.|.+++| +.-.+.+..-...+...+.++..|...++.+.....+....+.....+..+-+..-..-.
T Consensus 14 ~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~ 93 (264)
T PF06008_consen 14 GAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLE 93 (264)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999998 223334444555788888888888888888888888877777777777777666777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhCcCCchhHHHHHhhhh
Q 026514 195 KQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVS 234 (237)
Q Consensus 195 ~qIq~l~~s~yk~E~~A~gL~d~LrelP~reA~~lRseVa 234 (237)
..|+.+...|-.+-.++.+|=.....+|+.+-.+...|+-
T Consensus 94 ~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~ 133 (264)
T PF06008_consen 94 QFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQ 133 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHH
Confidence 8888888888888888888877777788877776666654
No 7
>PRK11637 AmiB activator; Provisional
Probab=91.07 E-value=4.8 Score=38.05 Aligned_cols=60 Identities=8% Similarity=0.187 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~ 207 (237)
++..++++..+...++.+..++..+.+.....++++..=..+|...-.++...++.+|+-
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444444455555555555555555555555555556666666666666666663
No 8
>PRK09039 hypothetical protein; Validated
Probab=87.22 E-value=26 Score=32.93 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=103.0
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HhhhChhhHHHH
Q 026514 43 MIYRKIVEESIDSAIEASRSRLSQTR---LTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH--VAASHPFITAGG 117 (237)
Q Consensus 43 ~~~qk~~~es~d~ai~aa~s~~s~~~---~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~--~A~shP~~a~g~ 117 (237)
|++=.--.+..|..++...++++++- +---..-..+++-+..+..+|...|..== .++.-.. ....+|.-
T Consensus 41 q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~-~Le~~~~~~~~~~~~~~---- 115 (343)
T PRK09039 41 QFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERS-RLQALLAELAGAGAAAE---- 115 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhcchHH----
Confidence 33333334566777777776665543 33445566777788888888886554211 1111000 00011211
Q ss_pred HHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 026514 118 AIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQI 197 (237)
Q Consensus 118 a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qI 197 (237)
..++-+ -..+..+.+.++.+...|.-|++-|+.+++.+..|+.....+|.+-.-=+.++..-+..|
T Consensus 116 -~~~~~l-------------~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 116 -GRAGEL-------------AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred -HHHHHH-------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 277889999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHHH-HHHHHHHHhhhH
Q 026514 198 QGVINS-AYKIERQAAGLK 215 (237)
Q Consensus 198 q~l~~s-~yk~E~~A~gL~ 215 (237)
+..+-. +=.+++-...+.
T Consensus 182 ~~a~~~~~~~l~~~~~~~~ 200 (343)
T PRK09039 182 NVALAQRVQELNRYRSEFF 200 (343)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 988744 555555555553
No 9
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=85.98 E-value=1.8 Score=35.81 Aligned_cols=73 Identities=25% Similarity=0.272 Sum_probs=52.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhCh------hhHHHHHHHHHHhhccC---chhHH
Q 026514 63 RLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHP------FITAGGAIGLGSFLLKR---PRHFL 133 (237)
Q Consensus 63 ~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A~shP------~~a~g~a~~aglllLr~---PRRfL 133 (237)
.++.+|..-..++..+++.++.+++.|...|+.+=+.++. .+..| .+.+|+++.+|++|-|+ ++||+
T Consensus 46 ~i~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~~~~~~llP~~~~I~vaglaGsIlar~r~~~~R~~ 121 (158)
T PF09769_consen 46 QIRKAREFLQPYYSWAQDELNTVKSKYYNAERSVTSTIAS----LHPPPEELLPGLGYIGVAGLAGSILARRRGIFKRFL 121 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCcccCcceeeeehhhhheeeeeccCcchhhhH
Confidence 3445677778889999999999999999999876666643 33333 34567778888888873 56666
Q ss_pred HHHhhh
Q 026514 134 YYNTLR 139 (237)
Q Consensus 134 yr~Tlg 139 (237)
|=-.+|
T Consensus 122 ~P~~~g 127 (158)
T PF09769_consen 122 YPLAFG 127 (158)
T ss_pred HHHHHH
Confidence 655554
No 10
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.14 E-value=8.8 Score=35.17 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=49.9
Q ss_pred HHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 026514 134 YYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA--GKQIQGVINSAYKIERQA 211 (237)
Q Consensus 134 yr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~a--g~qIq~l~~s~yk~E~~A 211 (237)
++..+...++ .+.++-+.+..+...++.++++...++....-.++.+.+++.+|.+. -+++..|-..++.+..+.
T Consensus 29 ~~~~l~k~~~---e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~ 105 (239)
T COG1579 29 IRKALKKAKA---ELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI 105 (239)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 4444444444 45556666666666666666666666666666666666666666321 345555666666666666
Q ss_pred hhhHHhhCcC
Q 026514 212 AGLKDIVGEL 221 (237)
Q Consensus 212 ~gL~d~Lrel 221 (237)
..|.|-|.++
T Consensus 106 ~~le~el~~l 115 (239)
T COG1579 106 NSLEDELAEL 115 (239)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 11
>PRK10132 hypothetical protein; Provisional
Probab=84.72 E-value=11 Score=30.57 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=50.4
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhccC
Q 026514 57 IEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKR 128 (237)
Q Consensus 57 i~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A~shP~~a~g~a~~aglllLr~ 128 (237)
++.+|.+.......+...+..+.+..+..+.-....++.+=.++=.+| +|++|+++.+|+|+-||
T Consensus 43 ~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~sv-------giaagvG~llG~Ll~RR 107 (108)
T PRK10132 43 AEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSV-------GTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHH-------HHHHHHHHHHHHHHhcc
Confidence 588888888888888888888777666667767777777767774444 47899999999998764
No 12
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=81.92 E-value=16 Score=32.20 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026514 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (237)
Q Consensus 146 all~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~ 207 (237)
..+..++.++.+....+..+..++.+.++|+..+|.....=...|+..|..|+++--+.-+.
T Consensus 106 ~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 106 RRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34556666666666666667777777777777777766666666666666666665544333
No 13
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.56 E-value=30 Score=28.20 Aligned_cols=52 Identities=31% Similarity=0.422 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 026514 153 TKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204 (237)
Q Consensus 153 ~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~ 204 (237)
.++..+...++.+.+..++|.+.....|.++.--..+.++..++++.+....
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555544445444444444444444444444433
No 14
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=78.81 E-value=39 Score=28.51 Aligned_cols=76 Identities=11% Similarity=-0.118 Sum_probs=45.1
Q ss_pred HHhhhhhhHHHhhhChhhH---HHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 96 AVGKVKEGIHVAASHPFIT---AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 96 ~f~kiKegv~~A~shP~~a---~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
||--+--++-+|.+|+++- .-..+...++++--=..|||.-..+-+..=+..+..--.+.++.+..++.+..|.++
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~ 81 (167)
T PRK08475 3 FFLLLLGFYAFAASLGATEQYDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALK 81 (167)
T ss_pred HHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567777777744 222233344444445569999888888776666666555555555555555555554
No 15
>PRK04654 sec-independent translocase; Provisional
Probab=78.78 E-value=21 Score=32.62 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=41.6
Q ss_pred HHhhccCchhHH-HHHhh----hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 026514 122 GSFLLKRPRHFL-YYNTL----RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQ 196 (237)
Q Consensus 122 glllLr~PRRfL-yr~Tl----grF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~q 196 (237)
..|++-||-|+= +=+++ |+|++ .++.....+++= ..++.++++.+++.+....++.+++.+...|+++++.
T Consensus 15 VALlV~GPerLPe~aRtlGk~irk~R~---~~~~vk~El~~E-l~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~ 90 (214)
T PRK04654 15 VALVVLGPERLPKAARFAGLWVRRARM---QWDSVKQELERE-LEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARA 90 (214)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555777763 33344 44442 344444444322 1234556666666655666666666666666666666
Q ss_pred HHHHHHH
Q 026514 197 IQGVINS 203 (237)
Q Consensus 197 Iq~l~~s 203 (237)
+++..+.
T Consensus 91 ~~~~~~~ 97 (214)
T PRK04654 91 LHDDVSR 97 (214)
T ss_pred hhhhhhc
Confidence 6544433
No 16
>PRK11637 AmiB activator; Provisional
Probab=78.14 E-value=21 Score=33.81 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=6.6
Q ss_pred ChhhHHHHHH
Q 026514 110 HPFITAGGAI 119 (237)
Q Consensus 110 hP~~a~g~a~ 119 (237)
.|.+++.+.+
T Consensus 21 ~~~~~~~ll~ 30 (428)
T PRK11637 21 RPILYASVLS 30 (428)
T ss_pred hhHHHHHHHH
Confidence 6777776544
No 17
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.98 E-value=44 Score=33.20 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=52.2
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhC
Q 026514 140 LFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (237)
Q Consensus 140 rF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lr 219 (237)
.+.++ ..++..+++.+.+..++...+.+.+||++-..-.|.++..=...|++++..+ +++++.-.++-+.|.
T Consensus 33 ~~a~~-~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l-------~~~~~~I~~~~~~l~ 104 (420)
T COG4942 33 AAADD-KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDL-------KKLRKQIADLNARLN 104 (420)
T ss_pred HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHhhHHHHHHHHH
Confidence 34444 6788899999999999999999999998877777766655555555555544 444444444444555
Q ss_pred cCCchh
Q 026514 220 ELPRRE 225 (237)
Q Consensus 220 elP~re 225 (237)
.|+..+
T Consensus 105 ~l~~q~ 110 (420)
T COG4942 105 ALEVQE 110 (420)
T ss_pred HHHHHH
Confidence 555444
No 18
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.75 E-value=21 Score=32.42 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=50.5
Q ss_pred hhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 026514 137 TLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKD 216 (237)
Q Consensus 137 TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d 216 (237)
-+++...+++. ..|.++-..++..++..++ |++--....++...=+++|+...+.+....+.+--+.+|+.|+.+
T Consensus 119 ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 119 LLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred HHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34444444444 4555555555555554333 222223333333334444555556666666666777777777766
Q ss_pred hhCcCCchhHHHHHhhhh
Q 026514 217 IVGELPRREASRFRSQVS 234 (237)
Q Consensus 217 ~LrelP~reA~~lRseVa 234 (237)
.-..| ..|.++||+||-
T Consensus 194 EydrL-lee~~~Lq~~i~ 210 (216)
T KOG1962|consen 194 EYDRL-LEEYSKLQEQIE 210 (216)
T ss_pred HHHHH-HHHHHHHHHHHh
Confidence 55444 357788888874
No 19
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=76.89 E-value=40 Score=27.66 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=42.3
Q ss_pred HHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE 173 (237)
Q Consensus 120 ~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~ 173 (237)
+..++++--=++|||.-..+-+..=+..+.+.-...++++..++.+++|.+...
T Consensus 15 i~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l 68 (141)
T PRK08476 15 VVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETIL 68 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455678999999999988888888888888888888888888888743
No 20
>PRK14160 heat shock protein GrpE; Provisional
Probab=73.60 E-value=36 Score=30.66 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhCc
Q 026514 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGE 220 (237)
Q Consensus 143 SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~--s~yk~E~~A~gL~d~Lre 220 (237)
|+|+.+...+..+..|...++.+++|...|.++. +|-.++.-+..+-.++-.. .-|.+++-+.+|+.++..
T Consensus 51 ~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~-------lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 51 SNEVKIEELKDENNKLKEENKKLENELEALKDRL-------LRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 4566666667777777777777777766666554 4444444444443333333 246788888888888877
Q ss_pred CCch
Q 026514 221 LPRR 224 (237)
Q Consensus 221 lP~r 224 (237)
|=++
T Consensus 124 LerA 127 (211)
T PRK14160 124 LERA 127 (211)
T ss_pred HHHH
Confidence 7443
No 21
>PRK14161 heat shock protein GrpE; Provisional
Probab=73.20 E-value=37 Score=29.60 Aligned_cols=75 Identities=24% Similarity=0.322 Sum_probs=51.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhC
Q 026514 142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVG 219 (237)
Q Consensus 142 ~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~--s~yk~E~~A~gL~d~Lr 219 (237)
.+|+.+..-+++-|..++..++.++.|...|.++..-+--||. +..+-.++-.. .-|.+++-+..|++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~Aefe-------N~rkR~~ke~~~~~~~a~~~~~~~LLpv~D 80 (178)
T PRK14161 8 NNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEID-------NTRKRLEKARDEAKDYAIATFAKELLNVSD 80 (178)
T ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3688888889999999999888888888887766544444443 33333333332 24678888888888877
Q ss_pred cCCc
Q 026514 220 ELPR 223 (237)
Q Consensus 220 elP~ 223 (237)
.|=+
T Consensus 81 nler 84 (178)
T PRK14161 81 NLSR 84 (178)
T ss_pred HHHH
Confidence 6643
No 22
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=72.93 E-value=45 Score=26.42 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=30.9
Q ss_pred ChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 026514 110 HPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRL--KAESEKLEKVA 176 (237)
Q Consensus 110 hP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdll--k~Es~KL~era 176 (237)
=|.|.++++++.+++.+.=.|+|- +-.++..=++-+..-+.++..+.+.++.+ +.+..+|+-+.
T Consensus 9 w~ii~a~~~~~~~~~~~~l~~~~a---~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l 74 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWLWLRRTYA---KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLEL 74 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 356666666666665544344432 22222222233334455555555555555 55555555443
No 23
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=71.61 E-value=71 Score=28.11 Aligned_cols=63 Identities=19% Similarity=0.351 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 026514 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLK 215 (237)
Q Consensus 143 SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~ 215 (237)
.=|+++...++....++..|+.+..+.+.-+..+. .+|+.--.+-..++++.|.+|..+.+|-
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~----------~~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAG----------EELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999888665521 2344444445555666666666666655
No 24
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.20 E-value=59 Score=27.04 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhc-cCchhHHHHHh-------hhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026514 115 AGGAIGLGSFLL-KRPRHFLYYNT-------LRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRG 186 (237)
Q Consensus 115 ~g~a~~aglllL-r~PRRfLyr~T-------lgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RG 186 (237)
+++.+++|+..+ .+++.-.++.- .+.....+..++..+++..++...+..+.++..++.+--....++++.-
T Consensus 49 g~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 128 (191)
T PF04156_consen 49 GVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSV 128 (191)
T ss_pred HHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344555555433 33333343332 3588899999999999999999999999999888876666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026514 187 RTKLRQAGKQIQGVINSAYKIE 208 (237)
Q Consensus 187 rtkLr~ag~qIq~l~~s~yk~E 208 (237)
..+|......+..+.+.+-++.
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666666666666665
No 25
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=69.25 E-value=76 Score=27.48 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhhccCchhHHHHHhhhhhcCh-HHHHHHHHHHHHHHHHHH
Q 026514 113 ITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE-ESLLSRADTKVKQLRQSI 162 (237)
Q Consensus 113 ~a~g~a~~aglllLr~PRRfLyr~TlgrF~SE-Eall~~ae~~V~eLr~sv 162 (237)
+++.+++++|+++ +++.++..++....+ +.++..|+.+.+.++...
T Consensus 8 ~~~~vG~~~G~~~----~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~ 54 (201)
T PF12072_consen 8 VALIVGIGIGYLV----RKKINRKKLEQAEKEAEQILEEAEREAEAIKKEA 54 (201)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666 667777777654443 456666666666555443
No 26
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.77 E-value=96 Score=31.20 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---hhhhhhHHHhh---hChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHH
Q 026514 79 LDYLQDVKSEYAAYEDAAV---GKVKEGIHVAA---SHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRAD 152 (237)
Q Consensus 79 ~d~l~~~~sey~~yEd~~f---~kiKegv~~A~---shP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae 152 (237)
.+++..+... .+.+.|| .+|++ +|. ....+..++...+|+=++-+-+.-|=.. .++..++. ..+...
T Consensus 136 ~~~i~~ilp~--~~~~~FfFDGE~I~~---la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~-~~~~~~~~-~~~~~~ 208 (650)
T TIGR03185 136 DEFINELLPL--ELADLFFFDGEKIEA---LANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNV-LRRRKKSE-LPSSIL 208 (650)
T ss_pred HHHHHHhCCH--hHHHHhcccHHHHHH---HhccccchHHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHhcc-cchHHH
Confidence 3344444433 5666777 67754 343 2334566666666666544444333221 22233332 234445
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHH
Q 026514 153 TKVKQLRQSIDRLKAESEKLE-------KVALVAEDELIRGRTKLRQAGKQ 196 (237)
Q Consensus 153 ~~V~eLr~svdllk~Es~KL~-------era~~AE~E~~RGrtkLr~ag~q 196 (237)
.++++|...++.+..+.+.+. .....++.+...=+.++++.|..
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~ 259 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD 259 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 555555555555444444444 33344444444444444444443
No 27
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=67.53 E-value=2.1e+02 Score=31.91 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhC
Q 026514 172 LEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (237)
Q Consensus 172 L~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lr 219 (237)
+.+.+...+++...=+.++.+...++..+....|..++......+.|+
T Consensus 345 ~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~ 392 (1353)
T TIGR02680 345 LQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLA 392 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555777777777888888888888877666666554
No 28
>PRK14148 heat shock protein GrpE; Provisional
Probab=65.99 E-value=39 Score=29.99 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHhhCcCCc
Q 026514 162 IDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 162 vdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s--~yk~E~~A~gL~d~LrelP~ 223 (237)
++.+..+...|++....-.+.++|-.++.-+..+-.++-... -|.+++-+.+|++.+..|=+
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~Dnler 105 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQ 105 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 444444444444444444455666666666666655555443 47788889999888877643
No 29
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=65.00 E-value=38 Score=26.99 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLE 173 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~ 173 (237)
+...+++..+|++.-+.|+.|.+.|.
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444443
No 30
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.28 E-value=1.1e+02 Score=27.68 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=36.0
Q ss_pred HHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 133 LYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAED 181 (237)
Q Consensus 133 Lyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~ 181 (237)
.|..+..++..|-..+..-++-+++++..++.|..|-....+....-..
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~ 60 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQ 60 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888888888888888888888888877776665544433
No 31
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=61.94 E-value=95 Score=26.01 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=42.1
Q ss_pred ChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 110 HPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 110 hP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
+|+ +....+...++++-.=.+|+|.-..+-+..=+..+...-.+.++++..++.+..|.++
T Consensus 15 ~~~-~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 75 (173)
T PRK13460 15 NPG-LVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEA 75 (173)
T ss_pred cHh-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 3333444555556667899998888888877777777777777777777666666665
No 32
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=61.87 E-value=90 Score=25.73 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=38.3
Q ss_pred HHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 120 ~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
+..++++--=.+|||.-..+-+..=+..+...-...++.+..++.+..|.++
T Consensus 16 i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~ 67 (164)
T PRK14471 16 ILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNER 67 (164)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444447899999999998888888777777777777777777766665
No 33
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=61.83 E-value=2.2e+02 Score=30.20 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcCCchhHHHHHhhhhhc
Q 026514 190 LRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREASRFRSQVSFL 236 (237)
Q Consensus 190 Lr~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP~reA~~lRseVasl 236 (237)
-.+.-.+|+.|++++-..+.+=.|-.+.|++.|+ +.+.+|.+.+++
T Consensus 260 ~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~-~~~~lr~~~~s~ 305 (698)
T KOG0978|consen 260 FSSINREMRHLISSLQEHEKLLKEYERELKDTES-DNLKLRKQHSSA 305 (698)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHH
Confidence 3455678999999999999999998888888886 688888887764
No 34
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.80 E-value=71 Score=24.19 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhC
Q 026514 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (237)
Q Consensus 147 ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lr 219 (237)
+|..-+.+|..+=.+|.+++.|...|.+.-.... ..+..|+..-.+++.--. ....+-.||++.|.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~----~e~~~L~~en~~L~~e~~---~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELK----EENEELKEENEQLKQERN---AWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Confidence 6777889999999999999999999887633322 556666666666663322 23344555555554
No 35
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=59.62 E-value=82 Score=27.50 Aligned_cols=71 Identities=23% Similarity=0.335 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhHHhhC
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAG--------KQIQGVINSAYKIERQAAGLKDIVG 219 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag--------~qIq~l~~s~yk~E~~A~gL~d~Lr 219 (237)
+..+-..-+.+...++.+.....+++++|.. -+..|+-.|--.+ .++.++-.++=....+...|...|+
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~---Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~ 123 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADWQEKAEL---ALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIA 123 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566777777788888888877544 4667776665544 5555555555555555555555555
Q ss_pred cC
Q 026514 220 EL 221 (237)
Q Consensus 220 el 221 (237)
+|
T Consensus 124 ~L 125 (219)
T TIGR02977 124 KL 125 (219)
T ss_pred HH
Confidence 44
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.40 E-value=81 Score=29.04 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcC
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTK---LRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtk---Lr~ag~qIq~l~~s~yk~E~~A~gL~d~Lrel 221 (237)
+...+..+++|+..+-.+..|++++.+|..-+|+.| -|-++ +++-.++|+-+-+..-.+|...+.|++.+..|
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888888888888888888888888887 44443 34455666666666666666666666665544
No 37
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=59.11 E-value=1.1e+02 Score=25.64 Aligned_cols=45 Identities=22% Similarity=0.337 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 026514 172 LEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKD 216 (237)
Q Consensus 172 L~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d 216 (237)
|..|..+-|+++-+-..+|+.+...|+..-..+-.+|++...|=.
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~ 122 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQ 122 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 445556666666666666666666666666666666666655543
No 38
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=58.23 E-value=1.2e+02 Score=25.97 Aligned_cols=45 Identities=9% Similarity=-0.040 Sum_probs=40.5
Q ss_pred chhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 129 PRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE 173 (237)
Q Consensus 129 PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~ 173 (237)
-+.|+|.--.+.+..=+..+...-.+.+.+|+.++.+++|.++.+
T Consensus 21 l~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L 65 (154)
T PRK06568 21 IYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQI 65 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999888854
No 39
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=55.02 E-value=1.2e+02 Score=25.03 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 114 TAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 114 a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
+...-++..++++--=++|||.-..+-+..=+..+...-.+.++.+..++.+..|.++
T Consensus 24 t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~ 81 (156)
T CHL00118 24 TLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQ 81 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555899999988888887777777777777777777777777766
No 40
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=54.44 E-value=2.1e+02 Score=27.54 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHhhccCchhHHHHHhhhhhcCh-HHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 112 FITAGGAIGLGSFLLKRPRHFLYYNTLRLFASE-ESLLSRA--------------DTKVKQLRQSIDRLKAESEKLEKVA 176 (237)
Q Consensus 112 ~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SE-Eall~~a--------------e~~V~eLr~svdllk~Es~KL~era 176 (237)
++.+|++++..+++||-+=+..+-+.+.-+..+ ...++.. -.+.+.|+..+..+.+...+|+-..
T Consensus 199 ~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l 278 (459)
T PF10337_consen 199 LIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAAL 278 (459)
T ss_pred HHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888899999998777666655433322 1222211 1455888888889999999999888
Q ss_pred HHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHH
Q 026514 177 LVAEDELIRGR---TKLRQAGKQIQGVINSAYKIER 209 (237)
Q Consensus 177 ~~AE~E~~RGr---tkLr~ag~qIq~l~~s~yk~E~ 209 (237)
..+--|+-+|+ .+|+.--+-++++...+.++..
T Consensus 279 ~~~~~Eis~grl~~~Dl~~i~~~lr~l~~~~~gL~~ 314 (459)
T PF10337_consen 279 RFLKLEISYGRLSPDDLKPIFSLLRSLMIPLSGLSS 314 (459)
T ss_pred HHHhhhHeeecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 5666666777777776666654
No 41
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=53.73 E-value=1.1e+02 Score=28.38 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=46.8
Q ss_pred HhhhhhhHHHhhhChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHH--------------HHHHHHHHHHHH
Q 026514 97 VGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSR--------------ADTKVKQLRQSI 162 (237)
Q Consensus 97 f~kiKegv~~A~shP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~--------------ae~~V~eLr~sv 162 (237)
+.+|+.=+.--.-+|-.+..+-.++|-|...--=-+-|+.+...-.--..-+.. ++.++.++...+
T Consensus 172 ~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l 251 (344)
T PF12777_consen 172 IKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKL 251 (344)
T ss_dssp HHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445543222112355555555555565555544445566665433333333333 333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026514 163 DRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN 202 (237)
Q Consensus 163 dllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~ 202 (237)
..+.++.+........-+.++.....+|..|.+=|.+|.+
T Consensus 252 ~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 252 AALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence 4444443333333333344444444445555444444443
No 42
>PRK14154 heat shock protein GrpE; Provisional
Probab=53.70 E-value=67 Score=28.92 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=10.5
Q ss_pred HHHHHHHhhhHHhhCcCC
Q 026514 205 YKIERQAAGLKDIVGELP 222 (237)
Q Consensus 205 yk~E~~A~gL~d~LrelP 222 (237)
|.+++-+..|++++..|=
T Consensus 99 ~a~e~~~~~LLpVlDnLe 116 (208)
T PRK14154 99 FGSKQLITDLLPVADSLI 116 (208)
T ss_pred HHHHHHHHHHhhHHhHHH
Confidence 455666666666665553
No 43
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=53.50 E-value=1.2e+02 Score=24.76 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHh
Q 026514 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQD-VKSEYAAYEDAAVGKVKEGIHVA 107 (237)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~-~~sey~~yEd~~f~kiKegv~~A 107 (237)
+..++..|+-..+.+.+.+...++.|.+ ..|..+.+| |+| +..+--..|+.+ +.+-+-+..+
T Consensus 84 ~~e~l~~al~~E~~vt~~~~~l~~~A~~----~~D~~t~~f------l~~~fl~eQ~e~~~~~-~~~l~~l~~~ 146 (161)
T cd01056 84 GLEALELALDLEKLVNQSLLDLHKLASE----HNDPHLADF------LESEFLEEQVESIKKL-AGYITNLKRV 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH----cCCHhHHHH------HHHHhhHHHHHHHHHH-HHHHHHHHHh
Confidence 7789999999999999999999999998 667666555 555 555544434333 3333444444
No 44
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.83 E-value=54 Score=34.17 Aligned_cols=63 Identities=21% Similarity=0.386 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKV-----------ALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQ 210 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~er-----------a~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~ 210 (237)
+.+...+++.|+.+++.+|+-.++.... ..+.+..+.+=+.-|++-|.+|..+++.+=.|.++
T Consensus 641 L~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 641 LERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566667888899999988888775532 24556667777889999999999999999888765
No 45
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=51.79 E-value=99 Score=23.09 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 026514 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204 (237)
Q Consensus 145 Eall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~ 204 (237)
...++...+-++.++..++.+.+|...+.+.+-.--++....--++...-..+..+-.++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v 84 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESV 84 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345788888888888888888888888776655555555554444444444444444443
No 46
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=51.74 E-value=68 Score=27.30 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhhHHhhCcCC
Q 026514 202 NSAYKIERQAAGLKDIVGELP 222 (237)
Q Consensus 202 ~s~yk~E~~A~gL~d~LrelP 222 (237)
..++++++.+..+.+.+.+=|
T Consensus 101 ~~~~~~~~~~~~I~~~v~~~P 121 (199)
T PF10112_consen 101 EKVSRIEKIARRIFKYVEKDP 121 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHCH
Confidence 334444444444444444433
No 47
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=51.25 E-value=1e+02 Score=30.69 Aligned_cols=77 Identities=21% Similarity=0.166 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 026514 145 ESLLSRADTKVKQLRQS-----IDRLKAESEKLEKVALVAEDELIR--GRTKLRQAGKQIQGVINSAYKIERQAAGLKDI 217 (237)
Q Consensus 145 Eall~~ae~~V~eLr~s-----vdllk~Es~KL~era~~AE~E~~R--GrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~ 217 (237)
++|+..+|+-|++|... |.-...|.++.++|...|-..|.. .+..+-+-.++......-|.++|.+-+.+.-.
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999764 344555666666665555555542 22233445567778888888888888887777
Q ss_pred hCcC
Q 026514 218 VGEL 221 (237)
Q Consensus 218 Lrel 221 (237)
|..|
T Consensus 302 L~~L 305 (434)
T PRK15178 302 YAQL 305 (434)
T ss_pred HHHH
Confidence 6655
No 48
>PRK15022 ferritin-like protein; Provisional
Probab=51.24 E-value=1.2e+02 Score=26.20 Aligned_cols=66 Identities=11% Similarity=0.202 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhCh
Q 026514 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHP 111 (237)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A~shP 111 (237)
+.+++..|+-..|.|++++..-.+.|.. -.| ..+.+||+|+..|=. =|-..|.+|=+=+..+..++
T Consensus 83 ~~e~fe~al~hEk~vt~~I~~L~~~A~~----~~D------~~t~~FL~wfv~EQ~-eEe~~~~~ild~l~~~~~~g 148 (167)
T PRK15022 83 LEELFQKTLEEYEQRSSTLAQLADEAKA----LND------DSTLNFLRDLEKEQQ-HDGLLLQTILDEVRSAKLAG 148 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCC------HhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCC
Confidence 6689999999999999999999998877 444 345666777777654 34456777766677776553
No 49
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=51.03 E-value=51 Score=30.68 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=44.4
Q ss_pred hhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026514 138 LRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGL 214 (237)
Q Consensus 138 lgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL 214 (237)
...+.--+..+...+.++..|+...+....|.++|++.+...+..+.|-..=+..-+.+-.|--.++-.++.+...|
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhccc
Confidence 34444455566666777777777777777776667666666666666655555444444444444444444443333
No 50
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=49.46 E-value=29 Score=25.54 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 026514 145 ESLLSRADTKVK---QLRQSIDRLKAESEKLEKV 175 (237)
Q Consensus 145 Eall~~ae~~V~---eLr~svdllk~Es~KL~er 175 (237)
.+|...|++..+ +++..++.++.|+.||+.|
T Consensus 20 K~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 20 KALAAQAEQQLAEAGDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHhcC
Confidence 567778887765 6788999999999998754
No 51
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=48.75 E-value=1.4e+02 Score=23.78 Aligned_cols=57 Identities=12% Similarity=0.069 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 115 AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 115 ~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
.+.-++..++|+--=++|||.-..+-+..=+..+.+.-.+.++++..++.+..|.++
T Consensus 8 ~~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~ 64 (140)
T PRK07353 8 LPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQ 64 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555789998888887777777777777777777776666666665
No 52
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=48.65 E-value=1.4e+02 Score=29.16 Aligned_cols=106 Identities=17% Similarity=0.101 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhhcc-CchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 026514 113 ITAGGAIGLGSFLLK-RPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLR 191 (237)
Q Consensus 113 ~a~g~a~~aglllLr-~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr 191 (237)
+.+.|++.+..+++| +++.-|-++.-.++..-...+......-..-......+-++...|+.....+.-|-.+++.
T Consensus 137 iGi~~a~~v~~l~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~~~~--- 213 (650)
T PF04632_consen 137 IGILCATLVSMLFFPQRARRQLRRRLAQRLADLARWLAALLDGDPDPAAERRRLARDIAALESLLSHARYESPRLRR--- 213 (650)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHhhccccCchhHH---
Confidence 344556667778887 6677777776666665555554433222111113444455555565555555555444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhCcCC
Q 026514 192 QAGKQIQGVINSAYKIERQAAGLKDIVGELP 222 (237)
Q Consensus 192 ~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP 222 (237)
....++.+..++..+=.....+-+.+..+|
T Consensus 214 -~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 243 (650)
T PF04632_consen 214 -RRRRLRALQARLLRLLALLRSLARRLAALP 243 (650)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333344444444444344444444444333
No 53
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=48.20 E-value=1.7e+02 Score=24.90 Aligned_cols=50 Identities=8% Similarity=-0.014 Sum_probs=31.1
Q ss_pred HHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 122 GSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 122 glllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
.++|+--..+|+|....+-+..=+..+.+--.+.++++..++.+..|.+.
T Consensus 41 F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~ 90 (181)
T PRK13454 41 LVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNK 90 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445889999888887776666665555555555555555444444
No 54
>PRK14140 heat shock protein GrpE; Provisional
Probab=47.99 E-value=1e+02 Score=27.33 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhHHhhCcC
Q 026514 204 AYKIERQAAGLKDIVGEL 221 (237)
Q Consensus 204 ~yk~E~~A~gL~d~Lrel 221 (237)
-|.+++-+..|++.+..|
T Consensus 83 ~~a~~~~~~~LLpvlDnL 100 (191)
T PRK14140 83 KYRAQSLASDLLPALDNF 100 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788888888887766
No 55
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=47.67 E-value=1.8e+02 Score=29.78 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=2.3
Q ss_pred HHHhhh
Q 026514 228 RFRSQV 233 (237)
Q Consensus 228 ~lRseV 233 (237)
.++.++
T Consensus 969 ~l~~~i 974 (1179)
T TIGR02168 969 EARRRL 974 (1179)
T ss_pred HHHHHH
Confidence 333333
No 56
>PRK14139 heat shock protein GrpE; Provisional
Probab=47.41 E-value=1.2e+02 Score=26.72 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhCcCC
Q 026514 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGELP 222 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~--s~yk~E~~A~gL~d~LrelP 222 (237)
|+..+..|...++.+++|...|.++..-+--|| -|..+-.++-.. .-|.+++-+.+|++++..|=
T Consensus 30 ~~~e~~~l~~~l~~le~e~~elkd~~lR~~Aef-------eN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLe 96 (185)
T PRK14139 30 AEDAAPALEAELAEAEAKAAELQDSFLRAKAET-------ENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLE 96 (185)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 445555566666666666555554433333333 333332222222 23556677777777766653
No 57
>PRK14153 heat shock protein GrpE; Provisional
Probab=47.38 E-value=1.1e+02 Score=27.27 Aligned_cols=65 Identities=14% Similarity=0.276 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHhhCcCCc
Q 026514 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 152 e~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s--~yk~E~~A~gL~d~LrelP~ 223 (237)
+.+++.+...++.++.+...| ++.++|-..+.-+..+-.++-... -|.+++-+..|++++..|=+
T Consensus 32 ~~~~~~~~~ei~~l~~e~~el-------kd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLer 98 (194)
T PRK14153 32 EPEDSTADSETEKCREEIESL-------KEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFER 98 (194)
T ss_pred hhhcccchHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 334455555555555555444 445566666665555555544433 47788888888888877643
No 58
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=46.98 E-value=2.2e+02 Score=25.98 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=47.7
Q ss_pred HHHHHhhhhhcChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 132 FLYYNTLRLFASEESLLSRADTKVKQLRQ--SIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIER 209 (237)
Q Consensus 132 fLyr~TlgrF~SEEall~~ae~~V~eLr~--svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~ 209 (237)
+|...|-+-+..=+..+...+..++.|+. ...+-..+.+||.+...-|+........+.+.++..+......+-+.=+
T Consensus 59 ~l~~~~~~~~~~i~~~~~~v~~~~~~l~~~~~~~l~~~~~~kl~~~~~~a~~~~~~~~~~a~~~~~~~~~~~~~ak~aa~ 138 (286)
T PF11727_consen 59 YLVKETEDFLGDIKLHKEQVDHRVERLRSLEKGKLTDSDVKKLKEICEEAKKKNTEQLEEAKKAMEEAEETHEEAKEAAA 138 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444444444444444431 1122225666777887888888888888888887777777666655544
Q ss_pred HH
Q 026514 210 QA 211 (237)
Q Consensus 210 ~A 211 (237)
.|
T Consensus 139 ~A 140 (286)
T PF11727_consen 139 KA 140 (286)
T ss_pred Hh
Confidence 44
No 59
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=46.87 E-value=1.4e+02 Score=23.31 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCc
Q 026514 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGE 220 (237)
Q Consensus 145 Eall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lre 220 (237)
|.+=..+..++.+|+..+..++..++.|.+.- ++|+.=-.+|-+-..++..|...+|.++.-...|=..++.
T Consensus 27 e~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~----~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 27 ENMNKATSLKYKKMKDIAAGLEKNLEDLNQKY----EELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55666778889999999999999998888763 4555555566666667777777777777766666555543
No 60
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=46.56 E-value=82 Score=29.23 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 113 ITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVAL 177 (237)
Q Consensus 113 ~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~ 177 (237)
+++.+|.+.|+++=-+| =.+.|.+.-+.++..||+..+.++.|.+.|..+..
T Consensus 12 ~aVFlALavGI~lG~~~-------------l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~ 63 (308)
T PF11382_consen 12 AAVFLALAVGIVLGSGP-------------LQPNLIDSLEDQFDSLREENDELRAELDALQAQLN 63 (308)
T ss_pred HHHHHHHHHHHHhcchh-------------hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666654444 45678888888999999999999999888887743
No 61
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=46.31 E-value=1.9e+02 Score=24.77 Aligned_cols=28 Identities=11% Similarity=-0.109 Sum_probs=15.2
Q ss_pred HhhhhhhHHHhhhChhhHHHHHHHHHHh
Q 026514 97 VGKVKEGIHVAASHPFITAGGAIGLGSF 124 (237)
Q Consensus 97 f~kiKegv~~A~shP~~a~g~a~~agll 124 (237)
-+.+++.-.++.-|=..++.+.++++++
T Consensus 112 ~~~~~~~r~~a~~nl~aa~~~~~aa~v~ 139 (144)
T PF11657_consen 112 NDLVREARKAAILNLVAAVLVLLAACVA 139 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667766655444444444433
No 62
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=46.19 E-value=1.8e+02 Score=24.38 Aligned_cols=49 Identities=6% Similarity=0.115 Sum_probs=30.0
Q ss_pred HhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 123 SFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 123 lllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
++++--=.+|||....+.+..=+..+...-.+.++.+..++.+..|.++
T Consensus 29 lil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 77 (175)
T PRK14472 29 VIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRE 77 (175)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344446789998888877766666665555555555555554444444
No 63
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=46.09 E-value=1.6e+02 Score=23.77 Aligned_cols=54 Identities=7% Similarity=0.099 Sum_probs=29.7
Q ss_pred HHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 118 AIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 118 a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
.++..++++--=.+|+|.-..+-+..=+..+...-...++++..++.+.+|.++
T Consensus 10 ~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~ 63 (156)
T PRK05759 10 QLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEA 63 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444446788888877776665555555444444444444444444443
No 64
>PRK14158 heat shock protein GrpE; Provisional
Probab=45.99 E-value=1.3e+02 Score=26.67 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHhhCcCCc
Q 026514 165 LKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 165 lk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s--~yk~E~~A~gL~d~LrelP~ 223 (237)
++.++.+|++.....++.++|=.+++-|..+-.++-... -|.+++-+..|++++..|=+
T Consensus 45 le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLer 105 (194)
T PRK14158 45 LEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMER 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 333333344333333444555555555555544444433 46778888888888776644
No 65
>PF06109 HlyE: Haemolysin E (HlyE); InterPro: IPR010356 This family consists of several enterobacterial haemolysin (HlyE) proteins. Haemolysin E (HlyE) is a novel pore-forming toxin of Escherichia coli, Salmonella typhi, and Shigella flexneri. HlyE is unrelated to the well characterised pore-forming E. coli haemolysins of the RTX family, haemolysin A (HlyA), and the enterohaemolysin encoded by the plasmid borne ehxA gene of E. coli 0157. However, it is evident that expression of HlyE in the absence of the RTX toxins is sufficient to give a haemolytic phenotype in E. coli. HlyE is a protein of 34 kDa that is expressed during anaerobic growth of E. coli. Anaerobic expression is controlled by the transcription factor, FNR, such that, upon ingestion and entry into the anaerobic mammalian intestine, HlyE is produced and may then contribute to the colonisation of the host [].; PDB: 2WCD_P 1QOY_A.
Probab=44.81 E-value=1.7e+02 Score=27.29 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=51.8
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh-------hhChhhHHHHHH
Q 026514 47 KIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVA-------ASHPFITAGGAI 119 (237)
Q Consensus 47 k~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A-------~shP~~a~g~a~ 119 (237)
|+..|+.|-|++--..-+.|... -..|..++..|.+|+.+|...-..++|.||--++-- ..--+.-||+++
T Consensus 11 k~ai~tad~aldlynk~ldqvip--w~tf~~tikelsrfk~eysq~as~lvg~ik~llm~sqd~yfeatq~vyewcgv~t 88 (299)
T PF06109_consen 11 KNAIDTADKALDLYNKYLDQVIP--WQTFNDTIKELSRFKQEYSQSASTLVGDIKSLLMNSQDRYFEATQTVYEWCGVTT 88 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHhhhCC--chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcchHhHHHHHHHHHHHHhHHH
Confidence 45556666666665555555543 457999999999999999999999999999776643 334566677765
No 66
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=44.63 E-value=17 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.2
Q ss_pred hhhhhhHHHhhhChhhHHHHHHHHHHhhc
Q 026514 98 GKVKEGIHVAASHPFITAGGAIGLGSFLL 126 (237)
Q Consensus 98 ~kiKegv~~A~shP~~a~g~a~~aglllL 126 (237)
.|+ +.-+++||.+-.|++.++|.++.
T Consensus 20 ekl---~rk~kenP~VPlG~l~t~aal~~ 45 (100)
T KOG4431|consen 20 EKL---LRKAKENPLVPLGCLGTTAALTA 45 (100)
T ss_pred HHH---HHHHHhCCCeeehHHHHHHHHHH
Confidence 566 77889999999999999988864
No 67
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=44.62 E-value=66 Score=27.47 Aligned_cols=60 Identities=30% Similarity=0.245 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDEL-----IRGRTKLRQAGKQIQGVINSAYKI 207 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~-----~RGrtkLr~ag~qIq~l~~s~yk~ 207 (237)
-...++++..++...+..+.|.++|++.+..+|++- ++.+-.+-.+-=||-=++.||.-+
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~a~~~lQIaI~Lasit~L 132 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDLAVALLQIAIVLASITAL 132 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999998887777653 334556666666776666666544
No 68
>PRK14145 heat shock protein GrpE; Provisional
Probab=43.95 E-value=1.6e+02 Score=26.35 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHhhCcCCch
Q 026514 162 IDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPRR 224 (237)
Q Consensus 162 vdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s--~yk~E~~A~gL~d~LrelP~r 224 (237)
++.++.+..+|++.+.-....++|-.+++-+..+-.++-... -|.+++-+.+|++.+..|=++
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerA 111 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERA 111 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 444444455555554444555666666666666555554443 467888888888888776443
No 69
>PRK14162 heat shock protein GrpE; Provisional
Probab=43.86 E-value=1.4e+02 Score=26.62 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhCcCCc
Q 026514 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 155 V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~--s~yk~E~~A~gL~d~LrelP~ 223 (237)
++.|...++.++++...|.+ .++|-.+++-|..+-.++-.. .-|.+++-+..|++++..|=+
T Consensus 41 ~~~l~~~l~~l~~e~~elkd-------~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLer 104 (194)
T PRK14162 41 VEDLEKEIADLKAKNKDLED-------KYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLER 104 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 34444444444444444433 344444444444444433332 236678888888887776633
No 70
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=43.48 E-value=2.1e+02 Score=29.70 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=66.2
Q ss_pred HhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHH
Q 026514 136 NTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS-------AYKIE 208 (237)
Q Consensus 136 ~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s-------~yk~E 208 (237)
..||.|. |.-|-+--+--+....+-..+..|..|.++-..-||.+|--=-.||+.|.+||..+|+. --++|
T Consensus 20 ~~l~~g~--e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E 97 (604)
T KOG3564|consen 20 EILGEGN--EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLE 97 (604)
T ss_pred HHhcCcc--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3567777 56666777888888888899999999999998999998888888999999999888875 34677
Q ss_pred HHHhhhHHhhC
Q 026514 209 RQAAGLKDIVG 219 (237)
Q Consensus 209 ~~A~gL~d~Lr 219 (237)
++-.-++|-|+
T Consensus 98 ~~i~~i~d~l~ 108 (604)
T KOG3564|consen 98 TQIQLIKDMLK 108 (604)
T ss_pred HHHHHHHHHHh
Confidence 77777777764
No 71
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=42.25 E-value=1e+02 Score=24.52 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=25.4
Q ss_pred HHHHHHHhhccCchhH-HHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 117 GAIGLGSFLLKRPRHF-LYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKV 175 (237)
Q Consensus 117 ~a~~aglllLr~PRRf-Lyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~er 175 (237)
+.+.+++.+.-|..-+ =|+.-......-+.-+...+++-+.|+..|+.+++....+++.
T Consensus 11 ll~~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 11 LLVWLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 3333444344444432 2333333334444444444455555555555554443444444
No 72
>PRK11677 hypothetical protein; Provisional
Probab=42.13 E-value=90 Score=26.35 Aligned_cols=59 Identities=17% Similarity=0.099 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 113 ITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVA 176 (237)
Q Consensus 113 ~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era 176 (237)
|+..+++++|++++|- +-++. +.=++=|.-+..++.+.+++|+.|+.+=.++.+|.+.+
T Consensus 8 i~livG~iiG~~~~R~----~~~~~-~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L 66 (134)
T PRK11677 8 IGLVVGIIIGAVAMRF----GNRKL-RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTM 66 (134)
T ss_pred HHHHHHHHHHHHHHhh----ccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666542 21111 22233345677777777777777777777777776653
No 73
>PF15456 Uds1: Up-regulated During Septation
Probab=41.77 E-value=1e+02 Score=25.51 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 026514 160 QSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGV 200 (237)
Q Consensus 160 ~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l 200 (237)
..||.+|+|.+.|..|.-..-.-+. =.+|+|+++.-|.++
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 3577777888888777655554444 556666666655554
No 74
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=41.49 E-value=2.1e+02 Score=24.01 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 113 ITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 113 ~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
.+....+...++|+--=.+|+|+-..+-+..=+..+...-...++.+..++.+..|.++
T Consensus 19 ~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 77 (173)
T PRK13453 19 GTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQ 77 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666667899999888887776666665555555555555555554444
No 75
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=41.45 E-value=1.5e+02 Score=22.25 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhC
Q 026514 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lr 219 (237)
.++.+.+=-..|..|..|.++|-..-..-..-++.=|.+....-++|..+-+.+-+.|.....|.+.|+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777788888888888887766666777777888888888888888888888888888877765
No 76
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=41.11 E-value=2.8e+02 Score=25.19 Aligned_cols=75 Identities=11% Similarity=0.244 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHhhCcCCchhHHHHHh
Q 026514 156 KQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQ----AAGLKDIVGELPRREASRFRS 231 (237)
Q Consensus 156 ~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~----A~gL~d~LrelP~reA~~lRs 231 (237)
+.|..+|+.+++=++-|... .-+=.-.++=.-+|..+.++|.+| +.+|+++-+ ...-+|.. ..+|..||.
T Consensus 106 esl~~~i~~~~~aa~~i~~~-~~~~~~~~~Y~eqm~~aa~~l~~L-N~~Ye~QL~~as~q~~~~~~i----~~na~~fke 179 (202)
T TIGR03513 106 QSLGNGINNFEGAAKTLAPM-TDSYAQQKKYIEQMSSLAANMEGL-NTIYEAQLKGASSHADANNEI----AINSSSLKE 179 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 44445555544444433332 122223335566778888888775 678998877 66667766 889999999
Q ss_pred hhhhc
Q 026514 232 QVSFL 236 (237)
Q Consensus 232 eVasl 236 (237)
|+.+|
T Consensus 180 Q~~kL 184 (202)
T TIGR03513 180 EMEKM 184 (202)
T ss_pred HHHHH
Confidence 99875
No 77
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=41.02 E-value=50 Score=25.10 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhh----hHHHHHHHHHHHH
Q 026514 37 NAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTAS----VHFQQTLDYLQDV 85 (237)
Q Consensus 37 ~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss----~h~~~~~d~l~~~ 85 (237)
+||.+|.--...-. ..+.+|..|++-+|..-.+|| .+++++|+.|+.+
T Consensus 11 ~aV~~a~~~~~~~~-~~q~~i~rAKnAlsSAyanss~aE~~QL~q~Q~qL~~l 62 (63)
T PF12758_consen 11 DAVEQAVSAASGSE-EQQKAIQRAKNALSSAYANSSDAEREQLRQFQDQLDQL 62 (63)
T ss_pred HHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 34444443333222 677889999998888888887 4788888888753
No 78
>PRK14146 heat shock protein GrpE; Provisional
Probab=40.95 E-value=1.5e+02 Score=26.77 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHhhCcCCc
Q 026514 168 ESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 168 Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s--~yk~E~~A~gL~d~LrelP~ 223 (237)
++.+|.+...-..+.++|-.+++-|..+...+-... -|.+++-+.+|+.++..|=+
T Consensus 62 ~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~Dnler 119 (215)
T PRK14146 62 ELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLER 119 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 333333333333444555555555555555544433 46788888888888877744
No 79
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=40.93 E-value=2.3e+02 Score=26.16 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhC
Q 026514 162 IDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (237)
Q Consensus 162 vdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lr 219 (237)
.+-++..++++.++....+++......+|+..=++|...-..+-.+-..+..|-++|+
T Consensus 8 ~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 8 LKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3344444555666666666666666777776666666655555666677777777776
No 80
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=40.55 E-value=95 Score=25.44 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=30.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcCCch
Q 026514 182 ELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRR 224 (237)
Q Consensus 182 E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP~r 224 (237)
+...+..++...-.+|+.++..+-.+--.-.|+=-.|-+.|+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~gLvDFPa~ 86 (120)
T PF09969_consen 44 EVNGLEAELEELEARLRELIDEIEELGVEVKDLDPGLVDFPAK 86 (120)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCcceeEeCCcc
Confidence 6778888888888888888887666555555554456666653
No 81
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.11 E-value=2.4e+02 Score=27.33 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHhhCcC
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIR--GRTKL----RQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~R--GrtkL----r~ag~qIq~l~~s~yk~E~~A~gL~d~Lrel 221 (237)
+...+.+..++...+|.+++|..++-+.....- +. ...+| ++-..+|..+....+.+|.+-..++-.|-.|
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~---~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQAK---RKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 445666667777777777777777665543210 11 12234 4445577788888888998888888888777
Q ss_pred Cchh
Q 026514 222 PRRE 225 (237)
Q Consensus 222 P~re 225 (237)
|..+
T Consensus 107 ~~~~ 110 (425)
T PRK05431 107 PHDS 110 (425)
T ss_pred CCcc
Confidence 7654
No 82
>PRK14143 heat shock protein GrpE; Provisional
Probab=39.66 E-value=2.2e+02 Score=26.01 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhCcCCch
Q 026514 154 KVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGELPRR 224 (237)
Q Consensus 154 ~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~--s~yk~E~~A~gL~d~LrelP~r 224 (237)
.+..|...++.+++|.+.|.++. +|=..++-|-.+-.++-.. .-|.+++-+..|++.+..|=++
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~-------lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerA 133 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQY-------MRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERA 133 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44556666666666666555543 3333333333332222221 2267788888888777766443
No 83
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.62 E-value=1.9e+02 Score=22.87 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 026514 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAED---ELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (237)
Q Consensus 147 ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~---E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~L 218 (237)
+|..-|.||+..=.+|.+++-|++.|.+--..... +...||..|.+.-.|++.--.+ -..+-.+|+..+
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~---WqerLr~LLGkm 76 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG---WQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Confidence 67788899999999999999999998865444444 4567888898888888765433 233444454444
No 84
>PRK14156 heat shock protein GrpE; Provisional
Probab=38.98 E-value=1.4e+02 Score=26.12 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHhhCcCCc
Q 026514 172 LEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 172 L~era~~AE~E~~RGrtkLr~ag~qIq~l~~s--~yk~E~~A~gL~d~LrelP~ 223 (237)
|++....-.+.+.|=.+++-|-.+-.++-... -|..++-+.+|++.+..|=+
T Consensus 39 l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLer 92 (177)
T PRK14156 39 ANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLER 92 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 33333333444455555555555444444443 56677777777777776633
No 85
>PRK04863 mukB cell division protein MukB; Provisional
Probab=38.96 E-value=3.7e+02 Score=30.78 Aligned_cols=92 Identities=13% Similarity=0.158 Sum_probs=44.1
Q ss_pred hhHHHHHHHHH-HhhccCchhHHHHHhh----------hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 112 FITAGGAIGLG-SFLLKRPRHFLYYNTL----------RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAE 180 (237)
Q Consensus 112 ~~a~g~a~~ag-lllLr~PRRfLyr~Tl----------grF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE 180 (237)
.|+.+...+++ |+.=+.-||-|+--.. ..+...+.-+.+.+..++++...++-|+.+.++..+-..+.+
T Consensus 262 lI~~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 262 LITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred HhhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554444 4444445777765543 334444455555555555555566666666555554433333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 026514 181 DELIRGRTKLRQAGKQIQGVINSA 204 (237)
Q Consensus 181 ~E~~RGrtkLr~ag~qIq~l~~s~ 204 (237)
++.+-..++...-.++..+-...
T Consensus 342 -e~lr~q~ei~~l~~~LeELee~L 364 (1486)
T PRK04863 342 -TALRQQEKIERYQADLEELEERL 364 (1486)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22232333333333443333333
No 86
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.80 E-value=3.4e+02 Score=25.54 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=57.3
Q ss_pred CchhHHHHHhhhh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 026514 128 RPRHFLYYNTLRL-FASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA 204 (237)
Q Consensus 128 ~PRRfLyr~Tlgr-F~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~ 204 (237)
.|+.-+|-.+++- .+.-+.-++..+.++..+...|+.+-+...++..-..-..+++-.-..++...-++|.-+-..|
T Consensus 19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788888887 8888888888888888888888877777777776666677777777777777766666554443
No 87
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=38.50 E-value=4e+02 Score=27.33 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026514 73 VHFQQTLDYLQDVKSEYA 90 (237)
Q Consensus 73 ~h~~~~~d~l~~~~sey~ 90 (237)
.+.....|-+..+..+..
T Consensus 179 ~nL~r~~d~l~el~~ql~ 196 (1179)
T TIGR02168 179 RKLERTRENLDRLEDILN 196 (1179)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 88
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.32 E-value=1.7e+02 Score=30.87 Aligned_cols=79 Identities=27% Similarity=0.231 Sum_probs=50.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcC
Q 026514 142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (237)
Q Consensus 142 ~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lrel 221 (237)
-.||+|+.-.-.+-..+-+.|-.+.+|++++..... +-+.++-.-.+.-+.+..+--.+|-+=..|+|.|++.
T Consensus 89 e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~-------~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~ 161 (772)
T KOG0999|consen 89 EREESLLQESAAKEEYYLQKILELENELKQLRQELT-------NVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEY 161 (772)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Confidence 458999998888888899999999999888764321 1111111122222233333344566667788888887
Q ss_pred CchhHH
Q 026514 222 PRREAS 227 (237)
Q Consensus 222 P~reA~ 227 (237)
--||+-
T Consensus 162 KfRE~R 167 (772)
T KOG0999|consen 162 KFREAR 167 (772)
T ss_pred HHHHHH
Confidence 777763
No 89
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.45 E-value=2.6e+02 Score=27.96 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=52.6
Q ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 139 RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQA 211 (237)
Q Consensus 139 grF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A 211 (237)
.|..+=..=+..-++++.+-++.-..+..+++.++.....-|.++++=..+|..-.++|..+-..+=++|.+=
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444444455666667777777777777777777777777788888888888888888888777777776553
No 90
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=37.16 E-value=2.7e+02 Score=29.02 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 026514 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGK 195 (237)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~ 195 (237)
..+++|++||..|..+.++++.++.-.+..|.++.+=+.+++++.+
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~ 128 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH 128 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777776666666666666666555543
No 91
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=37.01 E-value=1.8e+02 Score=27.90 Aligned_cols=71 Identities=27% Similarity=0.371 Sum_probs=50.9
Q ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026514 139 RLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAG 213 (237)
Q Consensus 139 grF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~g 213 (237)
..|.+|+.| +..+.-+..++..+..+.+|+..+.+.-..+- ..|+..|..+-..|..|...+-.|-.+|..
T Consensus 12 ~lfp~e~SL-~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~---~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~ 82 (383)
T PF04100_consen 12 ELFPDEQSL-SNLDELIAKLRKEIRELDEEIKELVREQSSSG---QDAEEDLEEAQEAIQELFEKISEIKSKAEE 82 (383)
T ss_pred HhCCChHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888886 66787788888777777777776443322111 457788888888888888888888777754
No 92
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.97 E-value=3.9e+02 Score=25.75 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=52.8
Q ss_pred HHHhhccCchhHHHHHhhhhhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 026514 121 LGSFLLKRPRHFLYYNTLRLFAS-EESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGK 195 (237)
Q Consensus 121 aglllLr~PRRfLyr~TlgrF~S-EEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~ 195 (237)
..+=+.+.-|+|+..+-||-=++ -|+.-+.-+..+....++++.+-.|..++.+....--.|+-+--+.|.++-.
T Consensus 96 i~y~~y~~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~ 171 (300)
T KOG2629|consen 96 IAYAAYRFVKSYVLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLV 171 (300)
T ss_pred HHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566788888888887777 3455555566667777777777777777777777777777777777777643
No 93
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=36.86 E-value=1.3e+02 Score=31.17 Aligned_cols=73 Identities=18% Similarity=0.059 Sum_probs=56.3
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH--------HHHHHH--hhhhhhHHHhhhChhhHHHHHHHHHHhhcc
Q 026514 58 EASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAA--------YEDAAV--GKVKEGIHVAASHPFITAGGAIGLGSFLLK 127 (237)
Q Consensus 58 ~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~--------yEd~~f--~kiKegv~~A~shP~~a~g~a~~aglllLr 127 (237)
+++.-.||||...+..|..+..|-|+.+...-+. |=..|| .-+|.+-.-+++||-.+.++|.+...|.--
T Consensus 340 r~in~~~~qis~~~~q~L~qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q 419 (591)
T KOG2412|consen 340 RAINPPFSQISKSNGQVLRQIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQ 419 (591)
T ss_pred hhcCCChhhhhhccHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHh
Confidence 4555679999999999999999999988776653 333344 557888889999999999998887666544
Q ss_pred Cch
Q 026514 128 RPR 130 (237)
Q Consensus 128 ~PR 130 (237)
-|+
T Consensus 420 ~Pd 422 (591)
T KOG2412|consen 420 FPD 422 (591)
T ss_pred Cch
Confidence 444
No 94
>PRK10404 hypothetical protein; Provisional
Probab=36.71 E-value=2.2e+02 Score=22.74 Aligned_cols=65 Identities=20% Similarity=0.129 Sum_probs=33.4
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhccC
Q 026514 57 IEASRSRLSQTRLTASVHFQQTLDYLQD-VKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKR 128 (237)
Q Consensus 57 i~aa~s~~s~~~~~ss~h~~~~~d~l~~-~~sey~~yEd~~f~kiKegv~~A~shP~~a~g~a~~aglllLr~ 128 (237)
++..|+|....-+.....+..+.+.+-. .+.-....++.+=.++=.+| +|++|+++.+|+|+-||
T Consensus 36 ~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~av-------GiaagvGlllG~Ll~RR 101 (101)
T PRK10404 36 YVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGI-------GVGAAVGLVLGLLLARR 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHH-------HHHHHHHHHHHHHHhcC
Confidence 5555555544444444444444442221 22222233333334443333 47899999999997654
No 95
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=36.21 E-value=3.1e+02 Score=24.26 Aligned_cols=6 Identities=33% Similarity=0.340 Sum_probs=2.7
Q ss_pred cCCchh
Q 026514 220 ELPRRE 225 (237)
Q Consensus 220 elP~re 225 (237)
++|-..
T Consensus 121 d~Pf~~ 126 (251)
T PF11932_consen 121 DLPFLL 126 (251)
T ss_pred CCCCCh
Confidence 445443
No 96
>PRK14150 heat shock protein GrpE; Provisional
Probab=36.04 E-value=2.4e+02 Score=24.84 Aligned_cols=43 Identities=19% Similarity=0.435 Sum_probs=27.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhCcCCc
Q 026514 181 DELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 181 ~E~~RGrtkLr~ag~qIq~l~~--s~yk~E~~A~gL~d~LrelP~ 223 (237)
..++|=.++.-+..+..++-.. ..|.+++-+.+|++++..|=+
T Consensus 59 d~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~Dnler 103 (193)
T PRK14150 59 DSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLER 103 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 4455555555555555544443 347788889999888877644
No 97
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=35.80 E-value=95 Score=21.92 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=17.9
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 141 FASEESLLSRADTKVKQLRQSIDRLKAESEKL 172 (237)
Q Consensus 141 F~SEEall~~ae~~V~eLr~svdllk~Es~KL 172 (237)
..+-..-+..-+.+.+.++...+.++.|.++|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334445555566666666666666666555
No 98
>PRK14151 heat shock protein GrpE; Provisional
Probab=35.35 E-value=2.1e+02 Score=24.90 Aligned_cols=61 Identities=16% Similarity=0.327 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHhhCcCCc
Q 026514 156 KQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 156 ~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s--~yk~E~~A~gL~d~LrelP~ 223 (237)
..|...++.++.|...|.++ ++|=..++-|-.+..++-... -|.+++-+..|++.+..|=+
T Consensus 23 ~~l~~~i~~le~e~~el~d~-------~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~Dnler 85 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQ-------SLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLER 85 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 34444455455554444433 344444444444444333322 35677777777777766533
No 99
>PRK14147 heat shock protein GrpE; Provisional
Probab=35.19 E-value=2e+02 Score=24.88 Aligned_cols=59 Identities=19% Similarity=0.347 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHhhCcCCc
Q 026514 158 LRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 158 Lr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s--~yk~E~~A~gL~d~LrelP~ 223 (237)
|...++.+++|+..|.+ .++|=.+++-|-.+..++-... -|.+++-+.+|++.+..|=+
T Consensus 23 l~~~l~~l~~e~~elkd-------~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~Dnler 83 (172)
T PRK14147 23 LKAEVESLRSEIALVKA-------DALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDA 83 (172)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 44444444444444443 3444444444444444444333 35567777888777776644
No 100
>PRK14155 heat shock protein GrpE; Provisional
Probab=34.86 E-value=1.8e+02 Score=26.05 Aligned_cols=62 Identities=27% Similarity=0.358 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhCcCCc
Q 026514 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 155 V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~--s~yk~E~~A~gL~d~LrelP~ 223 (237)
.++|...++.+++|...|.++. +|=..++-|-.+..++-.. .-|.+++-+..|+.++..|=+
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~-------lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLer 78 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQA-------LRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGR 78 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHH
Confidence 3555555666666655555443 3333333333333333332 346778888888888776633
No 101
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=34.62 E-value=3.8e+02 Score=25.43 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCc
Q 026514 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGE 220 (237)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lre 220 (237)
......++++.+.+-+-+|-..|.++.---|.++--|+-.|+.-..+.-+|---.-+.+-..-+|++.+.+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 33445666777777777776667766666666666666666665555444443333333333334444433
No 102
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=34.30 E-value=1.5e+02 Score=21.38 Aligned_cols=35 Identities=26% Similarity=0.555 Sum_probs=27.0
Q ss_pred hcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 141 FASEES-LLSRADTKVKQLRQSIDRLKAESEKLEKV 175 (237)
Q Consensus 141 F~SEEa-ll~~ae~~V~eLr~svdllk~Es~KL~er 175 (237)
|.+... ....|+.+..+-+..|+.|+.++++|..+
T Consensus 27 ~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 27 YSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp HCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344443 48889999999999999999999988754
No 103
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=34.19 E-value=3.5e+02 Score=24.39 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 026514 115 AGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLS-----------RADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 115 ~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~-----------~ae~~V~eLr~svdllk~Es~K 171 (237)
...-+...++|+--=.+|||+-.++-+.-=+.-+. .|++..++++..+...+.|.+.
T Consensus 8 ~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ 75 (250)
T PRK14474 8 VVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRAS 75 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555678999987776654443333 3333344444444444444444
No 104
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.02 E-value=2.2e+02 Score=21.98 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHh
Q 026514 73 VHFQQTLDYLQDVKSEYAAYEDAAV--GKVKEGIHVA 107 (237)
Q Consensus 73 ~h~~~~~d~l~~~~sey~~yEd~~f--~kiKegv~~A 107 (237)
..|++.++-+..+.++...+|...= ..+.+.+...
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555555556565555555443 3334444444
No 105
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=33.96 E-value=2.2e+02 Score=21.89 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=48.3
Q ss_pred hhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------HHHHHHHHHhhHHHHHHHHHHH
Q 026514 130 RHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE-KV-----------ALVAEDELIRGRTKLRQAGKQI 197 (237)
Q Consensus 130 RRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~-er-----------a~~AE~E~~RGrtkLr~ag~qI 197 (237)
-+|+|....+-|..=++.+.+...++++++..++.+..|.++.. +. -..|+++... .+.++-+++
T Consensus 17 ~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~---~~~ea~~~~ 93 (132)
T PF00430_consen 17 NKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEE---ILAEAEKEA 93 (132)
T ss_dssp HHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 56788887777777777777777777777777766666665522 11 1223333333 233344444
Q ss_pred HHHHHH-HHHHHHHHhhhHHhhCcC
Q 026514 198 QGVINS-AYKIERQAAGLKDIVGEL 221 (237)
Q Consensus 198 q~l~~s-~yk~E~~A~gL~d~Lrel 221 (237)
.+++.. ..+++.....+++.|+.-
T Consensus 94 ~~~~~~a~~~i~~e~~~a~~~l~~~ 118 (132)
T PF00430_consen 94 ERIIEQAEAEIEQEKEKAKKELRQE 118 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 356777766666666543
No 106
>PRK03918 chromosome segregation protein; Provisional
Probab=33.81 E-value=4.9e+02 Score=26.59 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhCc
Q 026514 196 QIQGVINSAYKIERQAAGLKDIVGE 220 (237)
Q Consensus 196 qIq~l~~s~yk~E~~A~gL~d~Lre 220 (237)
+++.+-..+...+..-..|.+.|.+
T Consensus 253 ~~~~l~~~i~~l~~el~~l~~~l~~ 277 (880)
T PRK03918 253 SKRKLEEKIRELEERIEELKKEIEE 277 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443
No 107
>PRK10698 phage shock protein PspA; Provisional
Probab=33.30 E-value=3.5e+02 Score=24.04 Aligned_cols=72 Identities=25% Similarity=0.309 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhHHhh
Q 026514 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA--------GKQIQGVINSAYKIERQAAGLKDIV 218 (237)
Q Consensus 147 ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~a--------g~qIq~l~~s~yk~E~~A~gL~d~L 218 (237)
-+.++-..-+.+...++.+..++.++.++|.+| +..|+-.|-.. ..++..+-..+=..+.++..|.+.|
T Consensus 46 alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~A---l~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l 122 (222)
T PRK10698 46 TSARALAEKKQLTRRIEQAEAQQVEWQEKAELA---LRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEI 122 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777788888888888888885544 66666666433 3444444444444444444444444
Q ss_pred CcC
Q 026514 219 GEL 221 (237)
Q Consensus 219 rel 221 (237)
+.|
T Consensus 123 ~~L 125 (222)
T PRK10698 123 GEL 125 (222)
T ss_pred HHH
Confidence 433
No 108
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=33.01 E-value=2.5e+02 Score=24.69 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=31.3
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026514 26 QSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVG 98 (237)
Q Consensus 26 ~~~~~~~~wi~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~ 98 (237)
-++-++.||+|+|+.. +.+.++.-|+.|-- -..++-..+.+..-...-|+.|...+-
T Consensus 109 Y~~~~t~~~lD~a~~~-------~~~ll~~~i~lAe~---------E~~l~~L~~ei~kT~rRVNalE~v~IP 165 (201)
T PRK02195 109 YSLLNTPIWVDTGIEL-------LKELVQLKIEAEVL---------QERLLLLEEELRKTTQRVNLFEKVLIP 165 (201)
T ss_pred cCCccCCHHHHHHHHH-------HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4555688999998743 34455555544433 123444445555555555555555543
No 109
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.00 E-value=4.3e+02 Score=27.26 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCc
Q 026514 145 ESLLSRADTKVKQLRQSIDRLKAES----EKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGE 220 (237)
Q Consensus 145 Eall~~ae~~V~eLr~svdllk~Es----~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lre 220 (237)
+.++.....++.+|...-+.++... +.|.+....=+.|.++=..+++....+++.++..+..=|-.-.-|...+..
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788888888888888776544 446666666678888888999999999999999999988888888888888
Q ss_pred CCch
Q 026514 221 LPRR 224 (237)
Q Consensus 221 lP~r 224 (237)
+|..
T Consensus 480 ~~k~ 483 (594)
T PF05667_consen 480 LPKD 483 (594)
T ss_pred CCCC
Confidence 8865
No 110
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.85 E-value=1.5e+02 Score=24.12 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=38.6
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 026514 51 ESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYED 94 (237)
Q Consensus 51 es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd 94 (237)
..+..-++.++.+|.+-++.=..||.++-+.|..+-..|+..-+
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~ 71 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQ 71 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999999999999987544
No 111
>PRK14163 heat shock protein GrpE; Provisional
Probab=32.80 E-value=2.4e+02 Score=25.56 Aligned_cols=63 Identities=8% Similarity=0.120 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHhhCcCCch
Q 026514 155 VKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN--SAYKIERQAAGLKDIVGELPRR 224 (237)
Q Consensus 155 V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~--s~yk~E~~A~gL~d~LrelP~r 224 (237)
+.+|+..++.+++|+..|.++. +|=..++-|..+-.++-.. .-|.+++-+..|+++|..|=+.
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~-------lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerA 106 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADL-------QRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRA 106 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Confidence 4566666666666666665543 3333333333333333322 2466788888888887776443
No 112
>PRK00708 sec-independent translocase; Provisional
Probab=32.57 E-value=3.9e+02 Score=24.35 Aligned_cols=23 Identities=4% Similarity=0.176 Sum_probs=13.1
Q ss_pred HHHHhhccCchhHH-HHHhhhhhc
Q 026514 120 GLGSFLLKRPRHFL-YYNTLRLFA 142 (237)
Q Consensus 120 ~aglllLr~PRRfL-yr~TlgrF~ 142 (237)
++..|++-||.++= .=+++|++.
T Consensus 13 ~vVaLvV~GPkrLP~~~R~lGk~v 36 (209)
T PRK00708 13 AIVLIVVVGPKDLPPMLRAFGKMT 36 (209)
T ss_pred HHHHHhhcCchHHHHHHHHHHHHH
Confidence 33445666888873 345566553
No 113
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=32.48 E-value=3.1e+02 Score=30.65 Aligned_cols=56 Identities=21% Similarity=0.289 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcC
Q 026514 166 KAESEKLEKVALVAEDEL-IRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (237)
Q Consensus 166 k~Es~KL~era~~AE~E~-~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lrel 221 (237)
|.+...|.+....++++. +.+-..+-+....+..|-+.+=|+|.+-..|.+-+.++
T Consensus 371 k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555 77777788888888888888888888888887776655
No 114
>PRK14141 heat shock protein GrpE; Provisional
Probab=32.33 E-value=2.2e+02 Score=25.67 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhHHhhCcCC
Q 026514 204 AYKIERQAAGLKDIVGELP 222 (237)
Q Consensus 204 ~yk~E~~A~gL~d~LrelP 222 (237)
.|.+++-+..|++++..|=
T Consensus 77 ~~a~~~~~~dLLpViDnLe 95 (209)
T PRK14141 77 AYGIAGFARDMLSVSDNLR 95 (209)
T ss_pred HHHHHHHHHHHhhhHhHHH
Confidence 4666777777777666553
No 115
>PRK11677 hypothetical protein; Provisional
Probab=32.06 E-value=1.3e+02 Score=25.44 Aligned_cols=42 Identities=17% Similarity=0.419 Sum_probs=37.5
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 026514 51 ESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAY 92 (237)
Q Consensus 51 es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~y 92 (237)
..+..-++.++..|.|-++--..||.++-+-|+.+...|+..
T Consensus 32 ~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~L 73 (134)
T PRK11677 32 QALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQL 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999999999999864
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.97 E-value=2.7e+02 Score=22.45 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGL 214 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL 214 (237)
+.+....+..+...+..++.+++...+.+..|+..|-|--.+=..+.+.|+.+=...-........|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l 78 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINEL 78 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888888999999999999998887766554444444444444444333333333
No 117
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.40 E-value=4.1e+02 Score=28.00 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHhhCc
Q 026514 159 RQSIDRLKAESEKLEKVALVAEDELIRGRTKLR-QAGKQIQGVINSAYKIERQAAGLKDIVGE 220 (237)
Q Consensus 159 r~svdllk~Es~KL~era~~AE~E~~RGrtkLr-~ag~qIq~l~~s~yk~E~~A~gL~d~Lre 220 (237)
+..++.++.|.+++.++....++++..=+.++. .+.++.+.+++.+ .+++..+++.|++
T Consensus 531 ~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a---~~~~~~~i~~lk~ 590 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKAL---KKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 333344444444444444444444443333332 2223333333322 3445555555554
No 118
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.23 E-value=5.7e+02 Score=26.97 Aligned_cols=13 Identities=8% Similarity=0.205 Sum_probs=6.3
Q ss_pred HHHHhhhHHhhCc
Q 026514 208 ERQAAGLKDIVGE 220 (237)
Q Consensus 208 E~~A~gL~d~Lre 220 (237)
.+++..++..|++
T Consensus 583 ~~~~~~~i~~lk~ 595 (782)
T PRK00409 583 KKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555544
No 119
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.19 E-value=3.5e+02 Score=28.79 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCc
Q 026514 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGE 220 (237)
Q Consensus 145 Eall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lre 220 (237)
|.-+..|...|..|+..++.++.+...+.++ .+.+..+-++.+-+-..++.++.++.-.-..+...|.+.|+.
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~---~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~ 430 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEER---YKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRA 430 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 5667788888888888888888887777774 445556666666666666666666443334444455444443
No 120
>KOG4154 consensus Arginine-rich protein [General function prediction only]
Probab=30.84 E-value=48 Score=29.13 Aligned_cols=31 Identities=32% Similarity=0.252 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHhhccCchhH------HHHHhhhhhc
Q 026514 112 FITAGGAIGLGSFLLKRPRHF------LYYNTLRLFA 142 (237)
Q Consensus 112 ~~a~g~a~~aglllLr~PRRf------Lyr~TlgrF~ 142 (237)
+++.|.++.+++-.|||.|.+ .--.|+|||-
T Consensus 7 ~~~~g~~~~la~s~lpgsralk~~dcevci~~l~rf~ 43 (178)
T KOG4154|consen 7 VATIGFAARLALSSLPGSRALKEEDCEVCIKTLGRFA 43 (178)
T ss_pred HHHHHHHHHHHHHhCCccccCCcccchHHHHHHHHHH
Confidence 468899999999999999986 5668899984
No 121
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=30.82 E-value=99 Score=22.47 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 147 LLSRADTKVKQLRQSIDRLKAESEKLEK 174 (237)
Q Consensus 147 ll~~ae~~V~eLr~svdllk~Es~KL~e 174 (237)
..+.|+.+..+-.+.+++++.+++++..
T Consensus 43 ~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 43 LLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888888887653
No 122
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.75 E-value=2.8e+02 Score=22.11 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 026514 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGV 200 (237)
Q Consensus 147 ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l 200 (237)
||.=|+--++=|=.+-+-+......|+++...+..+..+-+.+++....+|+.|
T Consensus 60 lfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 60 LFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777766666677777777777777777777777777776666666655
No 123
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=30.35 E-value=2.4e+02 Score=27.69 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHH
Q 026514 152 DTKVKQLRQSIDRLKAESEKLEK-----VALVAEDELIRG--------RTKLRQAGKQIQGVINSAYKI 207 (237)
Q Consensus 152 e~~V~eLr~svdllk~Es~KL~e-----ra~~AE~E~~RG--------rtkLr~ag~qIq~l~~s~yk~ 207 (237)
-++-+||+.+|-.+..|+.||.+ +|..|=+-.+.| ...|+.+|..+...+.-+.+.
T Consensus 7 ~~kskE~~enik~l~~~~~~~~esea~k~ar~~y~~~~~~~~~~s~~~~~~l~~~~~~v~~~~~~~~~s 75 (378)
T TIGR00984 7 LQKSQELQESIKQLQDRSGKLNESDALKKARKAYEKAESGTLKSSEVVGKTLGKLGDTMKKMAHKAWES 75 (378)
T ss_pred HHhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999983 333333333344 334555555555555554443
No 124
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=30.17 E-value=3.5e+02 Score=26.87 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhCc
Q 026514 191 RQAGKQIQGVINSAYKIERQAAGLKDIVGE 220 (237)
Q Consensus 191 r~ag~qIq~l~~s~yk~E~~A~gL~d~Lre 220 (237)
-..+++|..+-..+-|+|.|+.+ +|...+
T Consensus 339 ~~~~k~~~~~~~~i~k~~~q~~~-ke~nk~ 367 (391)
T smart00435 339 EKKKKQIERLEERIEKLEVQATD-KEENKT 367 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhcCee
Confidence 44568999999999999999875 444433
No 125
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.15 E-value=3.3e+02 Score=22.86 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=37.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (237)
Q Consensus 142 ~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~ 183 (237)
.+.+++-+.-+++++..+..|+.+.+--.+|++-++-||.-+
T Consensus 63 ~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nL 104 (114)
T KOG3501|consen 63 SDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNL 104 (114)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999998888999988888643
No 126
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=29.77 E-value=2.5e+02 Score=21.23 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=38.4
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHHHH
Q 026514 44 IYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGS 123 (237)
Q Consensus 44 ~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A~shP~~a~g~a~~agl 123 (237)
-+-+.+.+.....++.++.++.+.-+....+.... .+.+..+++......=..|++==..+ =+|++|+++.+|+
T Consensus 16 ~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~V~e~P~~s---vgiAagvG~llG~ 89 (94)
T PF05957_consen 16 DLARSAADLAGEKADEARDRAEEALDDARDRAEDA---ADQAREQAREAAEQTEDYVRENPWQS---VGIAAGVGFLLGL 89 (94)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHChHHH---HHHHHHHHHHHHH
Confidence 34444444444444445554444444433333322 23333444433333333333322222 2688999999999
Q ss_pred hhccC
Q 026514 124 FLLKR 128 (237)
Q Consensus 124 llLr~ 128 (237)
|+=||
T Consensus 90 Ll~RR 94 (94)
T PF05957_consen 90 LLRRR 94 (94)
T ss_pred HHhCC
Confidence 98654
No 127
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=29.64 E-value=97 Score=25.17 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 026514 173 EKVALVAEDELIRGRTKLRQAGKQIQGVINS 203 (237)
Q Consensus 173 ~era~~AE~E~~RGrtkLr~ag~qIq~l~~s 203 (237)
-+|...|...+++-.-.|+.+|.+|++.|..
T Consensus 66 NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 66 NERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3666777788888889999999999988754
No 128
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=29.57 E-value=18 Score=29.61 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcCC
Q 026514 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELP 222 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP 222 (237)
|...+.+--..++.++....++.+....-..++..-...+.++.++|...-+++-+++..+-.|+|.|+.|=
T Consensus 8 A~~~a~~v~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~ 79 (138)
T PF06009_consen 8 ANETAANVLDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLE 79 (138)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555544444444444555678888888888999999999999999987763
No 129
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=29.53 E-value=46 Score=26.26 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 147 LLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 147 ll~~ae~~V~eLr~svdllk~Es~K 171 (237)
-||+|+...+||.+.|+..|++.++
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999998876
No 130
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.45 E-value=3.1e+02 Score=22.26 Aligned_cols=120 Identities=21% Similarity=0.240 Sum_probs=57.3
Q ss_pred HhhhhhhHHHhhh--ChhhHHHHHHHHHHhhccCchhHHHHHh----hhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 97 VGKVKEGIHVAAS--HPFITAGGAIGLGSFLLKRPRHFLYYNT----LRLFASEESLLSRADTKVKQLRQSIDRLKAESE 170 (237)
Q Consensus 97 f~kiKegv~~A~s--hP~~a~g~a~~aglllLr~PRRfLyr~T----lgrF~SEEall~~ae~~V~eLr~svdllk~Es~ 170 (237)
+|.+..+...-.. .+.-..-+.=++--|+..+-|-.-.+.+ +.+..++-. +-+..++.|+..++.+..|+.
T Consensus 14 ~G~~~~~~~~~~~~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~---~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 14 RGYPSDGLLFDSAEESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIE---RLQNDVERLKEQLEELERELA 90 (151)
T ss_pred CCCCCCCccCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443322 2222233333333444444444444443 334444432 333444555555555555555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHhhC
Q 026514 171 KLEKVALVAEDELIRGRTKLRQAGKQIQGVINSA-----------YKIERQAAGLKDIVG 219 (237)
Q Consensus 171 KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~-----------yk~E~~A~gL~d~Lr 219 (237)
-++.+...++.++..=..+++..-.+++++-..+ -|-|..-..|++.|.
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 91 SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555555566666666666666666555333 244445555555553
No 131
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=29.29 E-value=3.8e+02 Score=23.20 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=48.2
Q ss_pred ChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHH
Q 026514 143 SEESLLS---RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQI----QGVINSAYK 206 (237)
Q Consensus 143 SEEall~---~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qI----q~l~~s~yk 206 (237)
|.+.+|. .|.++++.++..++.++.+....-+..-.-|...++.|.+|+..-+.+ ..-|+.+|-
T Consensus 14 sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe 84 (159)
T PF05384_consen 14 SKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYE 84 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHH
Confidence 4555555 445677778888888888888877666777888888899998888888 566777774
No 132
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=29.06 E-value=4.6e+02 Score=28.55 Aligned_cols=77 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcC
Q 026514 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (237)
Q Consensus 145 Eall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lrel 221 (237)
+.-+...+.+++++...++.++.+..++.+...-.+.++..=+.+.....++|+.+.....+++.+-..+...+..+
T Consensus 841 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l 917 (1163)
T COG1196 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917 (1163)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 133
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=29.04 E-value=4.1e+02 Score=23.54 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026514 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVIN 202 (237)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~ 202 (237)
.++..-++|+..|+.+.+|+++|++. +++--.||+-+..|.+-+.
T Consensus 117 ~Vd~~~~eL~~eI~~L~~~i~~le~~--------~~~~k~LrnKa~~L~~eL~ 161 (171)
T PF04799_consen 117 QVDQTKNELEDEIKQLEKEIQRLEEI--------QSKSKTLRNKANWLESELE 161 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666544 4444556665555555443
No 134
>PRK06285 chorismate mutase; Provisional
Probab=29.00 E-value=1.4e+02 Score=23.01 Aligned_cols=33 Identities=15% Similarity=0.373 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 026514 150 RADTKVKQLRQSIDRLKAESEK-LEKVALVAEDE 182 (237)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~K-L~era~~AE~E 182 (237)
.+..+.+++|..||.+-.++-+ |.+|+.++++=
T Consensus 4 ~~~~~L~elR~~ID~ID~~iv~Ll~~R~~l~~~I 37 (96)
T PRK06285 4 SAEKRLNEIRKRIDEIDEQIIDLIAERTSLAKEI 37 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999 56888777653
No 135
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=28.72 E-value=2.3e+02 Score=26.69 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=38.3
Q ss_pred HHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 026514 135 YNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA 193 (237)
Q Consensus 135 r~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~a 193 (237)
++.+-+|++.+++.. ...++..-+..+++++++|..-..-|.+++++=+.+....
T Consensus 188 ~~~~~~~~~~~~~~~----~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 188 RNDIDKFQEREDEKI----LHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred hchhhhhhhhhhHHH----HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 334667777766633 3444555566688899999988888899998877765543
No 136
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.71 E-value=6.1e+02 Score=27.00 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHhhCcCC
Q 026514 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGK---QIQGVINSAYKIERQAAGLKDIVGELP 222 (237)
Q Consensus 146 all~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~---qIq~l~~s~yk~E~~A~gL~d~LrelP 222 (237)
+=+-+-++.++.+++-++.+..|.+-+......|+-.+..-++++++... .|++++..+-+||+ |.+.|.--|
T Consensus 82 tnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieK----L~k~L~s~p 157 (705)
T KOG2307|consen 82 TNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEK----LSKMLLSPP 157 (705)
T ss_pred hhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCc
Confidence 33455677788888888888888888777777777777766777766654 45666666666665 788898899
Q ss_pred chh
Q 026514 223 RRE 225 (237)
Q Consensus 223 ~re 225 (237)
+.+
T Consensus 158 sk~ 160 (705)
T KOG2307|consen 158 SKE 160 (705)
T ss_pred ccc
Confidence 988
No 137
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=28.60 E-value=2.5e+02 Score=30.20 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=68.6
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhccC
Q 026514 51 ESIDSAIEASRSRLSQTRLTASVHFQQTLDY--LQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKR 128 (237)
Q Consensus 51 es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~--l~~~~sey~~yEd~~f~kiKegv~~A~shP~~a~g~a~~aglllLr~ 128 (237)
++..++++++||++.+|+++-..-..|.|-. ...+.+.=..+-++|+..--+.+.-.-.++.......+.+--|+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (944)
T PRK12779 16 EQARSTLESSRSELEELQQSEAVGVFQKQLALLQKRLLNDPASLRNMFIADGTQAIVWEFQQPELGEAFTTTLWELLLRG 95 (944)
T ss_pred HHHhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHHHHHHHHhcCCcCHHHHHHHHHHHHcC
Confidence 3556789999999999999876655554432 35666777788888887766777777778888888888888888887
Q ss_pred c------hhHHHHHhhhh
Q 026514 129 P------RHFLYYNTLRL 140 (237)
Q Consensus 129 P------RRfLyr~Tlgr 140 (237)
- -||||+-.|+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~ 113 (944)
T PRK12779 96 DDMSIILQRFIWALPLKF 113 (944)
T ss_pred CcHHHHHHHHHHhCchhH
Confidence 5 58999887753
No 138
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=28.54 E-value=3.5e+02 Score=22.56 Aligned_cols=59 Identities=5% Similarity=0.011 Sum_probs=28.5
Q ss_pred hhHHHHHhhhhhcChHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHH
Q 026514 130 RHFLYYNTLRLFASEESLLS-----------RADTKVKQLRQSIDRLKAESEKLE-KVALVAEDELIRGRT 188 (237)
Q Consensus 130 RRfLyr~TlgrF~SEEall~-----------~ae~~V~eLr~svdllk~Es~KL~-era~~AE~E~~RGrt 188 (237)
.+|||.-..+.+..=...+. .|+...++++..+...+.|.+.+. +.-..|+.+...-..
T Consensus 28 ~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~ 98 (167)
T PRK14475 28 LKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKE 98 (167)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888766665554444433 444444444455555555555422 223334444444333
No 139
>PF13997 YqjK: YqjK-like protein
Probab=28.48 E-value=58 Score=24.54 Aligned_cols=29 Identities=17% Similarity=0.485 Sum_probs=20.0
Q ss_pred hhHHHhhhChhhHHHHHHHHHHhhccCchhHH
Q 026514 102 EGIHVAASHPFITAGGAIGLGSFLLKRPRHFL 133 (237)
Q Consensus 102 egv~~A~shP~~a~g~a~~aglllLr~PRRfL 133 (237)
+++...+.||.+.+|+.+ ++.+++||+++
T Consensus 31 ~~l~~lr~~~~l~~g~~a---~~~ir~P~r~~ 59 (73)
T PF13997_consen 31 QTLRSLRRHPILGSGVLA---LYGIRHPRRLI 59 (73)
T ss_pred HHHHHHHHhHHHHHHHHH---HHHHhChHHHH
Confidence 345677889997666544 55667899854
No 140
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=28.41 E-value=1.3e+02 Score=29.00 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 026514 145 ESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTK 189 (237)
Q Consensus 145 Eall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtk 189 (237)
.+.|+..+....+.+-+|+.|.++..+|..-.++++++..+=|+|
T Consensus 137 ~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgk 181 (308)
T PF06717_consen 137 NYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGK 181 (308)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 467899999999999999999999999999999999999887765
No 141
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=27.85 E-value=3.8e+02 Score=27.48 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026514 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIR 185 (237)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~R 185 (237)
....++..|+..++.+..|..+|.+.....|.++.+
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888887777777776655
No 142
>PRK14157 heat shock protein GrpE; Provisional
Probab=27.79 E-value=2.9e+02 Score=25.36 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 147 LLSRADTKVKQLRQSIDRLKAESEKLEKV 175 (237)
Q Consensus 147 ll~~ae~~V~eLr~svdllk~Es~KL~er 175 (237)
-+..+++++.+++...-.+.+|.+...+|
T Consensus 85 ~l~~le~e~~e~kd~llR~~AEfeNyRKR 113 (227)
T PRK14157 85 PLGQAKKEAAEYLEALQRERAEFINYRNR 113 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666665
No 143
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=27.78 E-value=4.3e+02 Score=23.43 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 026514 164 RLKAESEKLEKVALVAEDELIR 185 (237)
Q Consensus 164 llk~Es~KL~era~~AE~E~~R 185 (237)
..++..+..+.....|+.++.|
T Consensus 112 ~~~~~~~~a~~~l~~a~~~~~r 133 (334)
T TIGR00998 112 SLKIKLEQAREKLLQAELDLRR 133 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333334444444444444
No 144
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=27.15 E-value=5.7e+02 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026514 71 ASVHFQQTLDYLQDVKSEYAAYEDAAVGKVK 101 (237)
Q Consensus 71 ss~h~~~~~d~l~~~~sey~~yEd~~f~kiK 101 (237)
+..+|+...+....+..+.+..-...=.|+|
T Consensus 144 ~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk 174 (336)
T PF05055_consen 144 FFHQFQSIHDQQSSLLEKLDSRKKKLRKKLK 174 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777766666666666655555444544
No 145
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.88 E-value=7.9e+02 Score=26.14 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=19.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 69 LTASVHFQQTLDYLQDVKSEYAAYEDAAV 97 (237)
Q Consensus 69 ~~ss~h~~~~~d~l~~~~sey~~yEd~~f 97 (237)
+.|..|=+ |.|..+..-|++|+..|=
T Consensus 337 ~~~ddH~R---DALAAA~kAY~~yk~kl~ 362 (652)
T COG2433 337 SVSDDHER---DALAAAYKAYLAYKPKLE 362 (652)
T ss_pred CCCCchHH---HHHHHHHHHHHHHHHHHH
Confidence 34556655 678888999999999765
No 146
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=26.80 E-value=42 Score=23.67 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=12.8
Q ss_pred hhhChhhHHHHHHHHHHhh
Q 026514 107 AASHPFITAGGAIGLGSFL 125 (237)
Q Consensus 107 A~shP~~a~g~a~~aglll 125 (237)
.++||.+.+|++.++|.+.
T Consensus 1 ~ke~plv~ig~~~~~~~l~ 19 (54)
T PF04588_consen 1 FKENPLVPIGMLATVGALA 19 (54)
T ss_dssp S-S--CHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 3689999999888887764
No 147
>PRK14144 heat shock protein GrpE; Provisional
Probab=26.37 E-value=3.9e+02 Score=23.97 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhHHhhCcCCc
Q 026514 204 AYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 204 ~yk~E~~A~gL~d~LrelP~ 223 (237)
-|.+++-+..|++.+..|=+
T Consensus 91 ~~a~~~~~~~LLpV~DnLer 110 (199)
T PRK14144 91 KYGVEKLISALLPVVDSLEQ 110 (199)
T ss_pred HHHHHHHHHHHhhHHhHHHH
Confidence 35667777777776665533
No 148
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=26.24 E-value=4e+02 Score=22.50 Aligned_cols=52 Identities=10% Similarity=-0.109 Sum_probs=29.1
Q ss_pred HHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 120 ~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
...+++|--=++|||.-..+.+..=..-+...-...++.+..++.+..+.++
T Consensus 32 Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 83 (184)
T CHL00019 32 INLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARA 83 (184)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555788998777776655555555444444444444444444443
No 149
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=25.95 E-value=3.3e+02 Score=24.65 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=42.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 026514 29 EDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH 105 (237)
Q Consensus 29 ~~~~~wi~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~ 105 (237)
-++.+|+|.|+ ..+.+.++.-|+.|-- -..|+-..+.+..-+..-|+.|...+-.+++.+.
T Consensus 120 ~~t~~~ld~a~-------~~~~elle~li~lae~---------e~~~~~L~~Ei~~T~RRVNalE~~iIP~l~~tik 180 (211)
T COG1394 120 LSTSAWLDEAI-------EKFEELLEKLIELAEL---------ETTLRLLLEEIRKTKRRVNALEYVIIPRLENTIK 180 (211)
T ss_pred cCCcHHHHHHH-------HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 66889999977 5677777777777654 3456677777777777777777777655554444
No 150
>PRK03918 chromosome segregation protein; Provisional
Probab=25.47 E-value=6.9e+02 Score=25.54 Aligned_cols=12 Identities=8% Similarity=-0.064 Sum_probs=7.0
Q ss_pred HHHHhhhhhcCh
Q 026514 133 LYYNTLRLFASE 144 (237)
Q Consensus 133 Lyr~TlgrF~SE 144 (237)
.+.+.+.++.+.
T Consensus 589 ~~~~~~~~l~~~ 600 (880)
T PRK03918 589 ELEERLKELEPF 600 (880)
T ss_pred HHHHHHHHhhhh
Confidence 455666666554
No 151
>PRK10304 ferritin; Provisional
Probab=25.40 E-value=4.2e+02 Score=22.43 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHH
Q 026514 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHF 75 (237)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~ 75 (237)
+.+++.+++-..+.+..++..+++.|.. ..|..+..|
T Consensus 83 ~~e~~~~~l~~E~~vt~~i~~l~~~A~~----~~D~~t~~f 119 (165)
T PRK10304 83 LDELFQETYKHEQLITQKINELAHAAMT----NQDYPTFNF 119 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHhHHHH
Confidence 6789999999999999999999999998 677776665
No 152
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=25.15 E-value=3.6e+02 Score=21.55 Aligned_cols=43 Identities=0% Similarity=0.081 Sum_probs=28.6
Q ss_pred chhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 129 PRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 129 PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
=.+|||....+-+..=+.-+.+--.+.++.+...+.+..|.++
T Consensus 12 l~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~ 54 (147)
T TIGR01144 12 CMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQV 54 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888887777776666666666666666666655555555
No 153
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=25.14 E-value=5.1e+02 Score=24.42 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=40.3
Q ss_pred HHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 026514 133 LYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE------KVALVAEDELIRGRTKLRQAGKQIQGVIN 202 (237)
Q Consensus 133 Lyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~------era~~AE~E~~RGrtkLr~ag~qIq~l~~ 202 (237)
-||.+|--.++ .|..|...|.--+.+..++.||. .+....|.||.|--.+...+..||-++=+
T Consensus 125 ~yR~~LK~IR~-------~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 193 (271)
T PF13805_consen 125 QYRIHLKSIRN-------REESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKR 193 (271)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhH
Confidence 36666665544 44555555555555566666665 35677788888888887788777765543
No 154
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=24.91 E-value=6e+02 Score=24.10 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhCcCC
Q 026514 196 QIQGVINSAYKIERQAAGLKDIVGELP 222 (237)
Q Consensus 196 qIq~l~~s~yk~E~~A~gL~d~LrelP 222 (237)
.++++-...-..+.+-..|-+.+..|.
T Consensus 94 ~~~~l~~~l~~~~~~l~~l~~~~~~l~ 120 (372)
T PF04375_consen 94 QLQQLQQELAQLQQQLAELQQQLAALS 120 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444443
No 155
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.89 E-value=1.2e+03 Score=27.40 Aligned_cols=193 Identities=14% Similarity=0.111 Sum_probs=112.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHH------hHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026514 29 EDGNPWIDNAVQQVMIYRKIVEE------SIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKE 102 (237)
Q Consensus 29 ~~~~~wi~~a~~qa~~~qk~~~e------s~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKe 102 (237)
.++.+-.+.|+.-|.-.+-.+.+ .+-+.|+.++-+-|+.++....-|-++-.+...+.+--+..++. |..|++
T Consensus 1404 ~Ga~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~L-i~~v~~ 1482 (1758)
T KOG0994|consen 1404 RGAVTRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNL-IQQVRD 1482 (1758)
T ss_pred cchhcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34555555555555444444433 33455666666667777666666666666666666555555543 344544
Q ss_pred hHHHhhhChhhHHHHHHHHHHhhccCc---------------------hhHHHHHhhhhhcChHHHHHH---HHHHHHHH
Q 026514 103 GIHVAASHPFITAGGAIGLGSFLLKRP---------------------RHFLYYNTLRLFASEESLLSR---ADTKVKQL 158 (237)
Q Consensus 103 gv~~A~shP~~a~g~a~~aglllLr~P---------------------RRfLyr~TlgrF~SEEall~~---ae~~V~eL 158 (237)
=+.-=...|...=.+|.-+--+-||-+ -.+| .+|.|-..-=|.|.+. |..+.+.+
T Consensus 1483 Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL-~~T~~di~ra~~L~s~A~~a~~~A~~v 1561 (1758)
T KOG0994|consen 1483 FLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAIL-SRTKGDIARAENLQSEAERARSRAEDV 1561 (1758)
T ss_pred HhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHH-HhhhhhHHHHHHHHHHHHHHHhHHHHH
Confidence 443334444444444333322222221 1222 3344433333444433 34455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcCCc
Q 026514 159 RQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 159 r~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP~ 223 (237)
+.++|.++.-++.-++.-..|++-|+---+.++.++.-|-.+-.++|..|..|..--..|++|-+
T Consensus 1562 ~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~ 1626 (1758)
T KOG0994|consen 1562 KGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELET 1626 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666666666677777787778888999988888889999999888776666666643
No 156
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=24.73 E-value=3e+02 Score=23.65 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=40.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 026514 54 DSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAAS 109 (237)
Q Consensus 54 d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A~s 109 (237)
--.+|-+...+|.++ .+|..+..-|..+...|+.|++-+-.+++-||.++.-
T Consensus 15 ~k~~e~a~~el~k~~----~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~ 66 (148)
T COG2882 15 KKEEEEAAIELSKIR----SEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQW 66 (148)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334555666666655 5788888888999999999999999999888876654
No 157
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.63 E-value=3.3e+02 Score=21.98 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=15.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Q 026514 183 LIRGRTKLRQAGKQIQGVINSAYK 206 (237)
Q Consensus 183 ~~RGrtkLr~ag~qIq~l~~s~yk 206 (237)
..+=+.++.+.-.+|+.++.+.|+
T Consensus 94 ~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 94 EKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344445566666777777777665
No 158
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.36 E-value=6.6e+02 Score=24.34 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcCCc
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALV----AEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~----AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP~ 223 (237)
+...+.+..++...+|.+++|..++-+.... .|++...=..+.++-..+|..+-...+.+|.+-..++-.|-.||.
T Consensus 32 i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~ 111 (418)
T TIGR00414 32 LIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPH 111 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3445555566666666666666655544322 111011111233445566777777888888887777777777765
Q ss_pred h
Q 026514 224 R 224 (237)
Q Consensus 224 r 224 (237)
.
T Consensus 112 ~ 112 (418)
T TIGR00414 112 E 112 (418)
T ss_pred c
Confidence 4
No 159
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.22 E-value=4.7e+02 Score=23.30 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcCCchhH
Q 026514 165 LKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREA 226 (237)
Q Consensus 165 lk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP~reA 226 (237)
++.....+..............+..++...++|++|-..+-++..+-..|-+.|.++=....
T Consensus 193 y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 193 YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 34444455555556666677777777777777777777777777777777777776654433
No 160
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.04 E-value=2.6e+02 Score=25.77 Aligned_cols=55 Identities=20% Similarity=0.409 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEK--LEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~K--L~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~ 207 (237)
+..+..-|.-|+..+..+|++.+| .++. ++|+----.|...+.+||.++..-|.+
T Consensus 99 LKdtq~Tv~AmK~~~k~mK~~ykkvnId~I-----edlQDem~Dlmd~a~EiQE~Lgr~y~~ 155 (218)
T KOG1655|consen 99 LKDTQATVAAMKDTNKEMKKQYKKVNIDKI-----EDLQDEMEDLMDQADEIQEVLGRNYNT 155 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHHHH-----HHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 567888899999999999999988 4454 566777789999999999999999975
No 161
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=23.25 E-value=3.2e+02 Score=23.48 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=52.6
Q ss_pred HHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh-hhChhhHHH-------
Q 026514 45 YRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVA-ASHPFITAG------- 116 (237)
Q Consensus 45 ~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A-~shP~~a~g------- 116 (237)
|++.+.-.+|+ ++..+...+.+...||.-. ++.+..+|+.-+|.+|.+=-+-+... .-|.....+
T Consensus 28 Y~QrL~g~~~e----~~~~v~~F~~~A~~~f~~~---~~~li~~~~~s~dp~~~~~a~~~~~~~~R~~~L~~~~~~l~~~ 100 (167)
T PF11157_consen 28 YQQRLGGHLDE----LRRQVAGFQATAARYFGGD---REALIAHYRQSSDPVFRARAESMQATIERYQRLSQQLQALAQA 100 (167)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHcCCC---HHHHHHHHHhCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88777665554 4555556777777776543 45677888888888873221111111 112222222
Q ss_pred HHHHHHHhhccCchhHHHHHhhhhhc
Q 026514 117 GAIGLGSFLLKRPRHFLYYNTLRLFA 142 (237)
Q Consensus 117 ~a~~aglllLr~PRRfLyr~TlgrF~ 142 (237)
.-..=.+.+++.|..=+.++|+..|+
T Consensus 101 ~~~~r~~~~~~~~d~~i~~~t~~~f~ 126 (167)
T PF11157_consen 101 SPFERAWYFLRPADPEIAQETWQNFS 126 (167)
T ss_pred ChHHHHHHHHhcccHHHHHHHHHhCC
Confidence 22223356777777778888887775
No 162
>PRK09465 tolC outer membrane channel protein; Reviewed
Probab=23.06 E-value=5.9e+02 Score=23.31 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHH----HHHHHHHHHHHHHHhhhHHhhCcCCchhHHH
Q 026514 157 QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLR---QAGKQI----QGVINSAYKIERQAAGLKDIVGELPRREASR 228 (237)
Q Consensus 157 eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr---~ag~qI----q~l~~s~yk~E~~A~gL~d~LrelP~reA~~ 228 (237)
..+..++.++...+..++....++..|..|...+. ++-.++ ..++...|..-.....|.-.++.|+....+.
T Consensus 353 ~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dvl~a~~~l~~a~~~~~~a~~~~~~a~~~L~~~~G~l~~~~~~~ 431 (446)
T PRK09465 353 ASISSINAYEQAVVSAQSSLDATEAGYEVGTRTIVDVLDATTTLYDAKQQLSNARYNYLINQLNLKQALGTLNEQDLLA 431 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 33444555555655566777888888998887633 333332 3455566666666667777777776554443
No 163
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=22.72 E-value=3.1e+02 Score=19.95 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026514 149 SRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 149 ~~ae~~V~eLr~svdllk~Es~K 171 (237)
...-...++++..++.+..+...
T Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 29 EKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555444444333
No 164
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.65 E-value=5.4e+02 Score=22.70 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhhhHHHhhhChhhHHHHHHHHHHhhccCchhHHHHHhhhhh
Q 026514 72 SVHFQQTLDYLQDVKSEYAAYEDAAV----------GKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLF 141 (237)
Q Consensus 72 s~h~~~~~d~l~~~~sey~~yEd~~f----------~kiKegv~~A~shP~~a~g~a~~aglllLr~PRRfLyr~TlgrF 141 (237)
...+..+...++.....++.+|+... ..+|+.-..+.+-- --+=-.-|++ ..+-+.+
T Consensus 63 ~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e-----------~k~~E~~rkl--~~~E~~L 129 (237)
T PF00261_consen 63 TEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAE-----------RKYEEVERKL--KVLEQEL 129 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-----------HHHHHCHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH--HHHHHHH
Confidence 44555566666667777777777766 23333333332210 0000011121 1133344
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026514 142 ASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVA-------EDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGL 214 (237)
Q Consensus 142 ~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~A-------E~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL 214 (237)
.-=|.-+..++.++.+|...+..+.+-.+.|+-+-..+ |..+..=..+|+.+-.-....-+++-+.|++-..|
T Consensus 130 e~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~l 209 (237)
T PF00261_consen 130 ERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRL 209 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677777777777777777776666333323 33344444455555555555555566666665555
Q ss_pred HHhh
Q 026514 215 KDIV 218 (237)
Q Consensus 215 ~d~L 218 (237)
-+.|
T Consensus 210 e~eL 213 (237)
T PF00261_consen 210 EDEL 213 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 165
>PLN02829 Probable galacturonosyltransferase
Probab=22.51 E-value=2.6e+02 Score=29.47 Aligned_cols=92 Identities=21% Similarity=0.124 Sum_probs=59.8
Q ss_pred HHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHH----
Q 026514 93 EDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAE---- 168 (237)
Q Consensus 93 Ed~~f~kiKegv~~A~shP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~E---- 168 (237)
=|..+..+||-+.+|+..|.|+-.-+-.-..--|+.--+= ..+.+|---+-..|-..+..+++.|.+.+...|.-
T Consensus 181 ~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e-~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~~~~d~ 259 (639)
T PLN02829 181 PDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKE-VQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQMQDDC 259 (639)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH-HHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhcccCH
Confidence 4788899999999999998766544433322222222111 24455555555556667888899888888766643
Q ss_pred ---HHHHHHHHHHHHHHHHh
Q 026514 169 ---SEKLEKVALVAEDELIR 185 (237)
Q Consensus 169 ---s~KL~era~~AE~E~~R 185 (237)
.+||..-....|+++..
T Consensus 260 ~~~~~KLr~~l~~~Ee~~~~ 279 (639)
T PLN02829 260 SIVVKKLRAMLHSAEEQLRV 279 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777643
No 166
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=22.46 E-value=5.2e+02 Score=22.52 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=42.3
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 026514 26 QSLEDGNPWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIH 105 (237)
Q Consensus 26 ~~~~~~~~wi~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~ 105 (237)
-++-.+.+|+|+|. ..+.+.++.-|+.|-. -..|+...+.+..-...-|+.|..++=.+++.+.
T Consensus 119 y~l~~t~~~~d~a~-------~~~~~~l~~li~lA~~---------e~~~~~L~~eI~~T~RRVNALE~vvIP~l~~~ik 182 (209)
T TIGR00309 119 YGLLFTSYKVDEAA-------EIYEEAVELIVELAEI---------ETTIRLLAEEIEITKRRVNALEHVIIPRLKNTIK 182 (209)
T ss_pred cCcccCCHHHHHHH-------HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 34566889999966 5566666666666544 3456667777777777777777777755544443
No 167
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=22.24 E-value=5.5e+02 Score=22.73 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=26.8
Q ss_pred HHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 120 GLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAE 168 (237)
Q Consensus 120 ~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~E 168 (237)
...++++--=++|||.-..+-+..=+.-+.+.-...++.+..++.++.|
T Consensus 13 InFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e 61 (246)
T TIGR03321 13 INFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERRE 61 (246)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555789998877776655554444444444444433333333
No 168
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=22.22 E-value=3.3e+02 Score=21.76 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E 182 (237)
-+++|.+|...++.+..|...|......+-+|
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666554444443
No 169
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.12 E-value=4.2e+02 Score=25.32 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIER 209 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~ 209 (237)
+..-.+.|.+.++.+.+++.+|.++..... +=..++++.-.||.++.+.+=.++.
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777888888777643333 5566777888888887777766554
No 170
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.06 E-value=3.6e+02 Score=20.53 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHH----HHHHHHHHHhhhH
Q 026514 149 SRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIR--GRTKLRQAGKQIQGVIN----SAYKIERQAAGLK 215 (237)
Q Consensus 149 ~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~R--GrtkLr~ag~qIq~l~~----s~yk~E~~A~gL~ 215 (237)
-....+...+...+|.+++|...+-+....+ +.. ....|++.+++|..-+. ..-.+|.+-..++
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~---~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKL---KKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---hhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666665555432211 122 24556666555554444 4444444433333
No 171
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.05 E-value=6e+02 Score=23.07 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=43.7
Q ss_pred HHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026514 135 YNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (237)
Q Consensus 135 r~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~ 207 (237)
+..++-+.+|+..+....+..+.|.+.=..+-.|++-...-.-.=|..++.-++.....-..|+++-.....+
T Consensus 21 ~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 21 LQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888776666666655444444444444444444444444444444333333
No 172
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.79 E-value=2.5e+02 Score=21.32 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (237)
Q Consensus 152 e~~V~eLr~svdllk~Es~KL~era~~AE~E~ 183 (237)
..++++|+..++.++.+..++..+...++.++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888888888888887766666554
No 173
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=21.75 E-value=94 Score=25.31 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVA 176 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era 176 (237)
+...++++++|+..+....+|.+.+.+|.
T Consensus 20 l~~l~~~~~~l~~~~~r~~ae~en~~~r~ 48 (165)
T PF01025_consen 20 LEELEKEIEELKERLLRLQAEFENYRKRL 48 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666665553
No 174
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.67 E-value=9.9e+02 Score=26.82 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKV 175 (237)
Q Consensus 143 SEEall~~ae~~V~eLr~svdllk~Es~KL~er 175 (237)
.+|..++.....+++|...++.+..+.+.+.+.
T Consensus 438 ~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~ 470 (1041)
T KOG0243|consen 438 QEEKEKKEMAEQIEELEEELENLEKQLKDLTEL 470 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666777777666666655555544
No 175
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.64 E-value=7.5e+02 Score=25.62 Aligned_cols=89 Identities=25% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcCCchhH
Q 026514 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRREA 226 (237)
Q Consensus 147 ll~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP~reA 226 (237)
++..+.++..++...|..++.|...|..+..-++++...-+-+++....-|-.+-..+--+=+.-..|-|.+..| .+|-
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L-k~en 178 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL-KAEN 178 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHh
Q ss_pred HHHHhhhhhc
Q 026514 227 SRFRSQVSFL 236 (237)
Q Consensus 227 ~~lRseVasl 236 (237)
.+||.++..+
T Consensus 179 ~rl~~~l~~~ 188 (546)
T KOG0977|consen 179 SRLREELARA 188 (546)
T ss_pred hhhHHHHHHH
No 176
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.62 E-value=1.5e+02 Score=22.02 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026514 154 KVKQLRQSIDRLKAESEKLEK 174 (237)
Q Consensus 154 ~V~eLr~svdllk~Es~KL~e 174 (237)
+|.||..-|.+|+.|+.+++.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEA 42 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999988764
No 177
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=21.50 E-value=4.6e+02 Score=24.90 Aligned_cols=61 Identities=25% Similarity=0.284 Sum_probs=29.4
Q ss_pred hhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 026514 137 TLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVI 201 (237)
Q Consensus 137 TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~ 201 (237)
++.|+.-|=..=.+-....++|.+.-..+.+|.++..++..--...+. .|..+.+-||..+
T Consensus 92 ml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~----~l~~a~~plq~~l 152 (355)
T PF09766_consen 92 MLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLK----SLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHh
Confidence 355555555444455555555555555555555555444433333332 4444444444443
No 178
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=21.46 E-value=6.4e+02 Score=25.53 Aligned_cols=26 Identities=4% Similarity=-0.037 Sum_probs=14.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHhHHHH
Q 026514 31 GNPWIDNAVQQVMIYRKIVEESIDSA 56 (237)
Q Consensus 31 ~~~wi~~a~~qa~~~qk~~~es~d~a 56 (237)
..||.-+-++.|++-++...++++..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f 98 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQF 98 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444444455666566666665543
No 179
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.35 E-value=6.7e+02 Score=23.35 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 026514 143 SEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (237)
Q Consensus 143 SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~L 218 (237)
|...+-+-+-.+.++|+.-.+++=++..-++++--.=|++.+.=.++|..|.+.++ ++.++...+..+.|
T Consensus 33 s~~~q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~------~~~~k~~~dF~~~L 102 (230)
T PF03904_consen 33 SQKTQMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFI------DKTEKVHNDFQDIL 102 (230)
T ss_pred cHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 55555555666889999999999999999998888899999999999999998875 34555555554443
No 180
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=21.18 E-value=6.7e+02 Score=26.78 Aligned_cols=81 Identities=23% Similarity=0.209 Sum_probs=54.8
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCc
Q 026514 141 FASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGE 220 (237)
Q Consensus 141 F~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lre 220 (237)
+..||.|+..+-.+=..|...|..+.+|++.+..... |-+++.-.-...++.+-...-.+|.+-..|++.+++
T Consensus 15 ~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~-------~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 15 EEREESLLQESASKEAYLQQRILELENELKQLRQELS-------NVQAENERLSQLNQELRKECEDLELERKRLREEIKE 87 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999888888888888888888887653322 222222223333444444555667778888888888
Q ss_pred CCchhHHH
Q 026514 221 LPRREASR 228 (237)
Q Consensus 221 lP~reA~~ 228 (237)
+--||+--
T Consensus 88 ~K~rE~rl 95 (717)
T PF09730_consen 88 YKFREARL 95 (717)
T ss_pred HHHHHHHH
Confidence 88887743
No 181
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.94 E-value=9.4e+02 Score=25.43 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026514 188 TKLRQAGKQIQGVINSAYK 206 (237)
Q Consensus 188 tkLr~ag~qIq~l~~s~yk 206 (237)
--|+++-++++.+++.+-+
T Consensus 577 ~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 577 QAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666654
No 182
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.82 E-value=3.2e+02 Score=21.46 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~ 184 (237)
..-++++.+.|+..++.+.+++.++.+....-+..+.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888999999999999999888877665555443
No 183
>PRK07857 hypothetical protein; Provisional
Probab=20.80 E-value=2e+02 Score=23.50 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 026514 152 DTKVKQLRQSIDRLKAESEK-LEKVALVAED 181 (237)
Q Consensus 152 e~~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (237)
...++++|..||.+-.|+-+ |.+|+.++.+
T Consensus 27 ~~~L~~lR~eID~ID~eIl~LL~eR~~la~e 57 (106)
T PRK07857 27 DAEIDELREEIDRLDAEILALVKRRTEVSQA 57 (106)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999 5688877754
No 184
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.71 E-value=3.9e+02 Score=20.43 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 144 EESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (237)
Q Consensus 144 EEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~ 183 (237)
-+.-..-.+++.+.++..++.+.+++.++.+....-+..|
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777777777777777777766655444444
No 185
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=20.60 E-value=4.8e+02 Score=21.42 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=34.1
Q ss_pred HHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 121 LGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 121 aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~K 171 (237)
..++++--=++|||.-..+.+..=+..+...-...+..+..++.+..|.++
T Consensus 17 nflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~ 67 (164)
T PRK14473 17 NFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEA 67 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455789999988888777776666666666666666666655555
No 186
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.18 E-value=3.1e+02 Score=24.16 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (237)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~ 184 (237)
+-+...++|+..++.|.+|.++|.+....-|++|.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888888888888777777774
No 187
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.12 E-value=1.1e+02 Score=21.30 Aligned_cols=11 Identities=27% Similarity=-0.073 Sum_probs=4.6
Q ss_pred HHHHHHHHHhh
Q 026514 115 AGGAIGLGSFL 125 (237)
Q Consensus 115 ~g~a~~aglll 125 (237)
.++++.+|+++
T Consensus 28 f~~G~llg~l~ 38 (68)
T PF06305_consen 28 FLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 188
>PRK11530 hypothetical protein; Provisional
Probab=20.01 E-value=1.9e+02 Score=26.00 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=29.3
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 147 LLSRA--DTKVKQLRQSIDRLKAESEKLEKVALVAED 181 (237)
Q Consensus 147 ll~~a--e~~V~eLr~svdllk~Es~KL~era~~AE~ 181 (237)
++++| +.+|..|+++|..+..|..+|-+.+..-|.
T Consensus 16 lLagCa~q~ev~ql~~~vs~LNqem~~Lt~qa~aleq 52 (183)
T PRK11530 16 LLAGCAQQSEVRQMHNSVSTLNQEMTQLTQQAVAIEQ 52 (183)
T ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666 678999999999999999999998776664
Done!