Query 026514
Match_columns 237
No_of_seqs 31 out of 33
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 15:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2efr_A General control protein 82.0 20 0.00069 29.6 11.3 70 146-215 84-153 (155)
2 2b9c_A Striated-muscle alpha t 80.2 17 0.00056 29.6 10.0 62 146-207 66-127 (147)
3 1ic2_A Tropomyosin alpha chain 76.2 19 0.00065 26.1 8.4 59 158-216 4-62 (81)
4 2b9b_A Fusion glycoprotein F0; 72.9 11 0.00037 36.7 8.0 60 165-224 428-487 (497)
5 3u1c_A Tropomyosin alpha-1 cha 69.8 33 0.0011 25.9 10.0 54 157-210 6-59 (101)
6 2efr_A General control protein 67.8 46 0.0016 27.5 9.8 56 148-207 13-68 (155)
7 3u59_A Tropomyosin beta chain; 63.7 44 0.0015 25.0 10.0 63 156-218 5-67 (101)
8 1z6o_M Ferritin heavy chain; m 62.1 44 0.0015 27.3 8.7 70 35-111 105-175 (191)
9 3oja_B Anopheles plasmodium-re 57.6 90 0.0031 28.4 10.7 55 164-218 506-560 (597)
10 2xzr_A Immunoglobulin-binding 57.5 71 0.0024 25.4 12.1 45 174-218 62-106 (114)
11 3na7_A HP0958; flagellar bioge 52.9 1E+02 0.0036 26.0 10.5 68 151-218 51-120 (256)
12 2r32_A GCN4-PII/tumor necrosis 52.5 10 0.00036 32.1 3.3 39 186-224 5-43 (166)
13 3u59_A Tropomyosin beta chain; 52.0 71 0.0024 23.8 10.4 69 150-218 6-74 (101)
14 2lom_A HIG1 domain family memb 56.9 3.1 0.00011 32.0 0.0 30 93-125 13-42 (93)
15 3bbp_D GRIP and coiled-coil do 50.0 27 0.00093 26.0 4.9 29 146-174 36-64 (71)
16 2dfs_A Myosin-5A; myosin-V, in 49.7 19 0.00065 37.3 5.4 47 129-175 897-950 (1080)
17 3pev_B Nucleoporin GLE1; RECA, 45.9 75 0.0025 28.4 8.0 67 63-130 51-125 (297)
18 3u1c_A Tropomyosin alpha-1 cha 44.3 99 0.0034 23.2 11.0 70 148-217 25-94 (101)
19 2dfs_A Myosin-5A; myosin-V, in 44.0 1.7E+02 0.0058 30.4 11.3 15 157-171 988-1002(1080)
20 3vkg_A Dynein heavy chain, cyt 42.0 5E+02 0.017 30.7 19.7 97 128-224 2010-2106(3245)
21 3ol1_A Vimentin; structural ge 41.7 1.2E+02 0.0041 23.4 9.3 84 152-235 19-119 (119)
22 2lon_A HIG1 domain family memb 47.7 5.5 0.00019 30.9 0.0 30 94-126 15-44 (99)
23 1i84_S Smooth muscle myosin he 41.3 1.4E+02 0.0048 30.7 10.2 57 161-217 879-935 (1184)
24 2b5u_A Colicin E3; high resolu 38.9 1.4E+02 0.0048 29.4 9.2 65 151-215 319-383 (551)
25 1cii_A Colicin IA; bacteriocin 37.1 3E+02 0.01 27.3 11.1 74 144-217 340-413 (602)
26 3zx6_A HAMP, methyl-accepting 36.9 2.1E+02 0.0073 24.9 11.1 66 146-211 87-152 (341)
27 4ani_A Protein GRPE; chaperone 35.7 1E+02 0.0035 26.5 7.1 60 156-222 62-123 (213)
28 1qu7_A Methyl-accepting chemot 35.7 1.9E+02 0.0066 24.1 9.2 64 148-211 9-72 (227)
29 3na7_A HP0958; flagellar bioge 35.6 2E+02 0.0068 24.2 11.3 72 148-219 41-114 (256)
30 1ses_A Seryl-tRNA synthetase; 35.2 2E+02 0.0068 26.4 9.3 77 146-222 28-105 (421)
31 2z5i_A TM, general control pro 34.7 1E+02 0.0035 21.0 5.6 23 149-171 8-30 (52)
32 3oja_A Leucine-rich immune mol 34.4 2.3E+02 0.008 25.3 9.5 18 183-200 465-482 (487)
33 3iv1_A Tumor susceptibility ge 34.1 1.5E+02 0.005 22.2 9.2 68 147-221 4-72 (78)
34 1kd8_B GABH BLL, GCN4 acid bas 33.9 77 0.0026 20.8 4.6 28 148-175 3-30 (36)
35 2jee_A YIIU; FTSZ, septum, coi 33.6 1.5E+02 0.0052 22.2 11.6 71 146-219 6-79 (81)
36 2v66_B Nuclear distribution pr 33.4 1.8E+02 0.006 22.9 8.1 48 151-198 1-55 (111)
37 3qne_A Seryl-tRNA synthetase, 32.7 3.3E+02 0.011 25.9 12.6 84 136-222 21-112 (485)
38 4dk0_A Putative MACA; alpha-ha 32.7 2.3E+02 0.0078 24.0 8.8 38 182-219 116-153 (369)
39 2yo3_A General control protein 32.1 90 0.0031 28.1 6.3 46 151-217 214-259 (268)
40 2ke4_A CDC42-interacting prote 31.7 67 0.0023 24.5 4.7 31 152-182 61-91 (98)
41 3m48_A General control protein 31.5 66 0.0023 20.8 3.9 26 149-174 3-28 (33)
42 1i84_S Smooth muscle myosin he 31.4 2.3E+02 0.0078 29.2 9.9 17 154-170 879-895 (1184)
43 3ghg_A Fibrinogen alpha chain; 31.2 4E+02 0.014 26.4 13.4 99 53-186 62-163 (562)
44 3oja_B Anopheles plasmodium-re 30.4 3.1E+02 0.011 24.9 10.2 30 66-95 442-471 (597)
45 2v71_A Nuclear distribution pr 30.2 2.5E+02 0.0087 23.8 8.7 66 156-221 45-114 (189)
46 4emc_A Monopolin complex subun 30.0 2.2E+02 0.0075 24.5 8.1 54 140-193 14-67 (190)
47 1ic2_A Tropomyosin alpha chain 28.3 1.6E+02 0.0056 21.0 10.2 69 151-219 4-72 (81)
48 3hnw_A Uncharacterized protein 28.2 2.3E+02 0.0077 22.6 10.2 57 152-208 74-130 (138)
49 4etp_A Kinesin-like protein KA 27.9 2E+02 0.0068 26.3 8.0 35 157-191 7-41 (403)
50 3fpp_A Macrolide-specific effl 27.4 1.8E+02 0.0063 24.4 7.2 31 180-210 113-143 (341)
51 2wq1_A General control protein 27.4 1.2E+02 0.0041 19.6 4.6 27 148-174 2-28 (33)
52 3qne_A Seryl-tRNA synthetase, 26.8 2.4E+02 0.0081 26.9 8.5 28 145-172 39-66 (485)
53 1go4_E MAD1 (mitotic arrest de 26.3 1.1E+02 0.0039 23.6 5.2 69 153-221 12-94 (100)
54 3azd_A Short alpha-tropomyosin 25.4 20 0.00067 23.1 0.6 30 154-183 5-34 (37)
55 3plt_A Sphingolipid long chain 25.3 3.5E+02 0.012 23.8 9.2 131 33-201 19-158 (234)
56 1cxz_B Protein (PKN); protein- 24.8 2.3E+02 0.0077 21.4 6.6 44 180-223 37-84 (86)
57 2dq0_A Seryl-tRNA synthetase; 24.0 3.6E+02 0.012 25.1 9.1 77 147-223 32-111 (455)
58 2js5_A Uncharacterized protein 23.8 2.1E+02 0.0073 21.0 6.0 50 161-218 4-61 (71)
59 3oja_A Leucine-rich immune mol 22.3 4.2E+02 0.014 23.6 9.6 27 166-192 423-449 (487)
60 3rmi_A Chorismate mutase prote 21.8 1.7E+02 0.0058 22.3 5.4 31 151-181 10-41 (114)
61 2r2v_A GCN4 leucine zipper; co 21.2 1.8E+02 0.0061 18.9 4.6 28 148-175 3-30 (34)
62 2d8d_A Aroag, phospho-2-dehydr 20.7 1.5E+02 0.0052 21.1 4.7 28 154-181 4-32 (90)
63 1lrz_A FEMA, factor essential 20.7 2.5E+02 0.0085 25.0 7.1 57 151-208 245-301 (426)
64 3c98_B Syntaxin-1A; protein co 20.2 2.6E+02 0.0091 22.2 6.5 55 153-207 47-104 (279)
No 1
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=81.97 E-value=20 Score=29.65 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 026514 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLK 215 (237)
Q Consensus 146 all~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~ 215 (237)
..+..|+.+.+.---+|.-+-+++.+|++........++.=.-.|.++-.+|.++..-.|.+++..+.|+
T Consensus 84 ~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 84 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4677888888888888888888888899998888888998999999999999999999999999988876
No 2
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=80.17 E-value=17 Score=29.62 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026514 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (237)
Q Consensus 146 all~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~ 207 (237)
.+...|++++.+....+..+-.++.+.++|+-.||.....=-..|+..|..|++|--+--|.
T Consensus 66 ~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eeka 127 (147)
T 2b9c_A 66 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEEL 127 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 34568899999999999999999999999999999999999999999999999987554333
No 3
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.25 E-value=19 Score=26.06 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 026514 158 LRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKD 216 (237)
Q Consensus 158 Lr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d 216 (237)
++..|..++.|.....+++..+|.++..-.-...+...+|.+|-+.+-.+|...-...+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666665555556666666666666555554443333
No 4
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=72.86 E-value=11 Score=36.68 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcCCch
Q 026514 165 LKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRR 224 (237)
Q Consensus 165 lk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP~r 224 (237)
.+.|+.+......-|++-+.+--..|.+-+..+..+.+.+|.+|+..+.|+.-.+|-|+-
T Consensus 428 ISseL~~vn~sl~~a~~~I~~Sn~~L~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (497)
T 2b9b_A 428 ISQNLAAVNKSLSDALQHLAQSDTYLSAIEDKIEEILSKIYHIENEIARIKKLIGEAPGG 487 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHhhhhhhhHHHHHHHHHhccCCCC
Confidence 566777777777888888888888899999999999999999999999999999999973
No 5
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.82 E-value=33 Score=25.89 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 157 QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQ 210 (237)
Q Consensus 157 eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~ 210 (237)
..+..|..|+.|.....+|+-.+|.+++.=.-...+...+|.+|-+.+-.+|..
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555544444444555555554444444433
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=67.77 E-value=46 Score=27.50 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~ 207 (237)
...|++++.+... +-.++.+-++|+..||.....=-..|+.+|..|++|--+--|.
T Consensus 13 ae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seeka 68 (155)
T 2efr_A 13 LSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKY 68 (155)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHH
Confidence 3456666665444 7777788888888888887777778888888888877665443
No 7
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=63.65 E-value=44 Score=25.00 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 026514 156 KQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (237)
Q Consensus 156 ~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~L 218 (237)
...+..|..|+-|.....+++-.+|.+++--.-...+...+|.+|=+.+-.+|...-.+.+.|
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l 67 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESV 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666665555555555566666555555555444444333
No 8
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1
Probab=62.08 E-value=44 Score=27.33 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHhhhCh
Q 026514 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQD-VKSEYAAYEDAAVGKVKEGIHVAASHP 111 (237)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~~-~~sey~~yEd~~f~kiKegv~~A~shP 111 (237)
+.+++..|+-+.|.+.+++...++.|.. -++..+.||. |||++ +..+--.-|..+.+.|-+=..++..+|
T Consensus 105 ~~e~le~aL~~Ek~v~~~i~~l~~~a~~----~~D~~d~~~~---d~Le~~fl~EQve~~~~l~~~i~~l~k~~~~~~ 175 (191)
T 1z6o_M 105 GVEALEHALSMESDVTKSIRNVIKACED----DSEFNDYHLV---DYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHE 175 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCCCHHHH---HHHHHTHHHHHHHHHHHHHHHHHHHHTTTTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCcCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 6689999999999999999999999987 4566677765 55555 555555556666777755556665554
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.63 E-value=90 Score=28.44 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 026514 164 RLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (237)
Q Consensus 164 llk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~L 218 (237)
.++.+.+++.++.+..|.+.++=.....+--.+++.+-+.+=.+|++-..-++.+
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 4444555555555544444444333333333444444444444444433333333
No 10
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=57.48 E-value=71 Score=25.41 Aligned_cols=45 Identities=16% Similarity=0.354 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 026514 174 KVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (237)
Q Consensus 174 era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~L 218 (237)
.|+----....-.+-++|++..|+-.|++.+|-+|+..+.|+.-+
T Consensus 62 aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 62 ARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333444555677899999999999999999999999987643
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=52.91 E-value=1e+02 Score=26.00 Aligned_cols=68 Identities=7% Similarity=0.115 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 026514 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRT--KLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrt--kLr~ag~qIq~l~~s~yk~E~~A~gL~d~L 218 (237)
+...+++++..+..+..++..+..+..-.++.+..|++ .+.+-.++|..+-+.+-..|.....+|+.+
T Consensus 51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444433332 233344455555555555555555555544
No 12
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=52.52 E-value=10 Score=32.09 Aligned_cols=39 Identities=26% Similarity=0.574 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcCCch
Q 026514 186 GRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPRR 224 (237)
Q Consensus 186 GrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP~r 224 (237)
|-+.+++--..|..+++.+|.||+.-+.++..++++|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ta 43 (166)
T 2r32_A 5 GGSRMKQIEDKIEEILSKIYHIENEIARIKKLIGERETA 43 (166)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 556677888889999999999999999999999999875
No 13
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=52.03 E-value=71 Score=23.81 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 026514 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (237)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~L 218 (237)
...+++.-|+...|........++...-.+|.+....-..+.+-.+.|+.+-..+=+.+.+.....+.|
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555554444444444444444444444555544444444444444444443
No 14
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=56.92 E-value=3.1 Score=31.99 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=23.5
Q ss_pred HHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhh
Q 026514 93 EDAAVGKVKEGIHVAASHPFITAGGAIGLGSFL 125 (237)
Q Consensus 93 Ed~~f~kiKegv~~A~shP~~a~g~a~~aglll 125 (237)
|..+..|+ +.-+++||++-+|++.+++.++
T Consensus 13 ~e~~~~K~---~rk~ke~PlvpIg~~~~~~vl~ 42 (93)
T 2lom_A 13 EEDQGSKL---IRKAKEAPFVPVGIAGFAAIVA 42 (93)
Confidence 55666777 7778999999999877776665
No 15
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=50.03 E-value=27 Score=25.99 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 146 SLLSRADTKVKQLRQSIDRLKAESEKLEK 174 (237)
Q Consensus 146 all~~ae~~V~eLr~svdllk~Es~KL~e 174 (237)
.||+-.++..-.|-+-++++|.|+++|+.
T Consensus 36 ~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 36 GLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 58889999999999999999999999974
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=49.71 E-value=19 Score=37.30 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=8.9
Q ss_pred chhHHHHHhhhhhcChHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 129 PRHFLYYNTLRLFASEESL-------LSRADTKVKQLRQSIDRLKAESEKLEKV 175 (237)
Q Consensus 129 PRRfLyr~TlgrF~SEEal-------l~~ae~~V~eLr~svdllk~Es~KL~er 175 (237)
-|+++=|.-+.+++.|..- -..-+.++++|...++...+|...|.++
T Consensus 897 ~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~ 950 (1080)
T 2dfs_A 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK 950 (1080)
T ss_dssp HHHHHHHHHTTTC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777665432 2345666777777777665555555444
No 17
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=45.85 E-value=75 Score=28.40 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=45.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------HH--hhhhhhHHHhhhChhhHHHHHHHHHHhhccCch
Q 026514 63 RLSQTRLTASVHFQQTLDYLQDVKSEYAAYEDA------AV--GKVKEGIHVAASHPFITAGGAIGLGSFLLKRPR 130 (237)
Q Consensus 63 ~~s~~~~~ss~h~~~~~d~l~~~~sey~~yEd~------~f--~kiKegv~~A~shP~~a~g~a~~aglllLr~PR 130 (237)
.+.||. +|..|.+...+.|..+..+.+.-... +| .-|+.+-.-+..||..+-++|.++.-++-..|.
T Consensus 51 ~igQLt-~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~ 125 (297)
T 3pev_B 51 KFGQLT-NSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPE 125 (297)
T ss_dssp HHHHCC-SBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTT
T ss_pred hhcccc-CCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCcc
Confidence 456775 77888888888888887664332211 11 345566666778999999999887766655554
No 18
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=44.31 E-value=99 Score=23.23 Aligned_cols=70 Identities=21% Similarity=0.187 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDI 217 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~ 217 (237)
...|+.+++.+.+..+..-.|..-|..+...-|.|+-+=...|..+-..+..--+..-+.|...++|--.
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777777777777777777777777777777777777666443
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.95 E-value=1.7e+02 Score=30.35 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 026514 157 QLRQSIDRLKAESEK 171 (237)
Q Consensus 157 eLr~svdllk~Es~K 171 (237)
.|...++.+..+.++
T Consensus 988 ~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.97 E-value=5e+02 Score=30.66 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=67.2
Q ss_pred CchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026514 128 RPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (237)
Q Consensus 128 ~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~ 207 (237)
.|-|==-..--..+..-++-++.++.+++++..+++.++.+-+++......-|.|+..-..||..|.+=|.+|.+.-=--
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 56554434444444445566677777778888888888877777666667777788888888888888888887766666
Q ss_pred HHHHhhhHHhhCcCCch
Q 026514 208 ERQAAGLKDIVGELPRR 224 (237)
Q Consensus 208 E~~A~gL~d~LrelP~r 224 (237)
+.++..|.+.+..|||.
T Consensus 2090 ~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2090 EQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHH
Confidence 66677777766666653
No 21
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=41.67 E-value=1.2e+02 Score=23.39 Aligned_cols=84 Identities=17% Similarity=0.327 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHh
Q 026514 152 DTKVKQLRQSIDRLKAESEKLE---KVALVAEDELIR-------GRTKLRQAGKQIQGVINSA----YKIERQAAGLKDI 217 (237)
Q Consensus 152 e~~V~eLr~svdllk~Es~KL~---era~~AE~E~~R-------GrtkLr~ag~qIq~l~~s~----yk~E~~A~gL~d~ 217 (237)
++.+.+||..|+.+..|-.+|. +.+..+=++|+. -|..+-+.=.-++..+... -..|++..+|++-
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666555544 223333333322 1233333223333333333 3578889999876
Q ss_pred hC---cCCchhHHHHHhhhhh
Q 026514 218 VG---ELPRREASRFRSQVSF 235 (237)
Q Consensus 218 Lr---elP~reA~~lRseVas 235 (237)
|. .+=-.|-..||+||++
T Consensus 99 l~FLKk~heeEl~eLq~qi~~ 119 (119)
T 3ol1_A 99 IAFLKKLHEEEIQELQAQIQE 119 (119)
T ss_dssp HHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 54 3344566677777653
No 22
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=47.65 E-value=5.5 Score=30.94 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhc
Q 026514 94 DAAVGKVKEGIHVAASHPFITAGGAIGLGSFLL 126 (237)
Q Consensus 94 d~~f~kiKegv~~A~shP~~a~g~a~~aglllL 126 (237)
..+..|+ +.-+++||++-+||+.+++.++.
T Consensus 15 es~~~K~---~rk~ke~PlvpIg~l~~~~vl~~ 44 (99)
T 2lon_A 15 DCVSEKL---LRKTRESPLVPIGLGGCLVVAAY 44 (99)
Confidence 4566777 77789999999998877776653
No 23
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=41.34 E-value=1.4e+02 Score=30.73 Aligned_cols=57 Identities=9% Similarity=0.084 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 026514 161 SIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDI 217 (237)
Q Consensus 161 svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~ 217 (237)
.++.+..+.++|++....++.++..-+..+..+..++..+....-+++.+-..|.+.
T Consensus 879 ~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 879 ELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444555555555555555555555555555554444444433
No 24
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=38.89 E-value=1.4e+02 Score=29.44 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 026514 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLK 215 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~ 215 (237)
|+++++..|..++...+-...+.||...++.=+.--|+.|-.+-+++-..+..+-..++.+-++|
T Consensus 319 Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~ 383 (551)
T 2b5u_A 319 AERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPM 383 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChh
Confidence 44455555555555555555566666666666666667776666777776666666666655443
No 25
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=37.07 E-value=3e+02 Score=27.25 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 026514 144 EESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDI 217 (237)
Q Consensus 144 EEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~ 217 (237)
+..+++.-.++...|||-++..++|.-+++.-....--..-++.....++-..+..+.+---.+|+++.++...
T Consensus 340 ~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 340 DKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34677777788888999999999999888877777777777888888888888888777777777777776655
No 26
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=36.87 E-value=2.1e+02 Score=24.91 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQA 211 (237)
Q Consensus 146 all~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A 211 (237)
.-+......+++|..+++......+.+.+.+..+.+.+..|...+.+....+..|..++-+|..-.
T Consensus 87 ~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~ 152 (341)
T 3zx6_A 87 ASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADII 152 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555667778888888888888888888888888888888888888877777777666665443
No 27
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=35.72 E-value=1e+02 Score=26.49 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHhhCcCC
Q 026514 156 KQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINS--AYKIERQAAGLKDIVGELP 222 (237)
Q Consensus 156 ~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s--~yk~E~~A~gL~d~LrelP 222 (237)
+.|...++.++.|...|.+ .++|-..++-|-.+-.++-... -|.+++-+..|+..|..|-
T Consensus 62 ~~l~~~l~~l~~e~~el~d-------~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnle 123 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEH-------RYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFE 123 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444443 3444444444444444433333 3567777788877766553
No 28
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=35.68 E-value=1.9e+02 Score=24.11 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQA 211 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A 211 (237)
+......+++|..+++......+...+.+..+.+....|...+.+....++.|..++-+|..-.
T Consensus 9 ~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~~I~~i~ 72 (227)
T 1qu7_A 9 LEQTAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADII 72 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888888888888888888888888999999999988888888877776665443
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=35.63 E-value=2e+02 Score=24.25 Aligned_cols=72 Identities=8% Similarity=0.075 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHhhC
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA--GKQIQGVINSAYKIERQAAGLKDIVG 219 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~a--g~qIq~l~~s~yk~E~~A~gL~d~Lr 219 (237)
+.+....+..++..++.++.+..+++.-.........+-..+|.+. -++++.|-+.+-..++.-..|-|.+.
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eil 114 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIE 114 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555555442 35666666666666666666655543
No 30
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.17 E-value=2e+02 Score=26.43 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcCC
Q 026514 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAE-DELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELP 222 (237)
Q Consensus 146 all~~ae~~V~eLr~svdllk~Es~KL~era~~AE-~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP 222 (237)
+-+...+.+..++...++.+++|..++-+....+. ++...=..+.++-+.+|..+-.....+|.+-..++-.|-.||
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 105 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44555667777777777777777777766533211 121111233444455566666666666666555555554444
No 31
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=34.68 E-value=1e+02 Score=21.02 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026514 149 SRADTKVKQLRQSIDRLKAESEK 171 (237)
Q Consensus 149 ~~ae~~V~eLr~svdllk~Es~K 171 (237)
.-||+.|..|..+||.+..|+..
T Consensus 8 efAERsV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999988776654
No 32
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.44 E-value=2.3e+02 Score=25.26 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=6.8
Q ss_pred HHhhHHHHHHHHHHHHHH
Q 026514 183 LIRGRTKLRQAGKQIQGV 200 (237)
Q Consensus 183 ~~RGrtkLr~ag~qIq~l 200 (237)
...-+.+|.++-.+=+.|
T Consensus 465 ~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 465 LASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHhcccHHHHHHHHHHHH
Confidence 333333344433333333
No 33
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.09 E-value=1.5e+02 Score=22.20 Aligned_cols=68 Identities=25% Similarity=0.472 Sum_probs=45.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcC
Q 026514 147 LLSRADTKVK-QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGEL 221 (237)
Q Consensus 147 ll~~ae~~V~-eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lrel 221 (237)
|++..+-++. .|+..++....|++-|..- +.|+..|.+||..--.+|++--. .+++-..-|.+..-+|
T Consensus 4 llSAVeDKLRrrl~E~~~q~qaEl~sLrrT----~~EL~~G~~KL~~mi~~l~~E~~---~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 4 LISAVSDKLRWRMKEEMDRAQAELNALKRT----EEDLKKGHQKLEEMVTRLDQEVA---EVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4555555554 5788888888888777554 88999999999887666665444 3455555555554443
No 34
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.91 E-value=77 Score=20.84 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKV 175 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~er 175 (237)
.+.-+.+|++|-..-..+.+|..+|.+-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566788888888888888888887654
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.57 E-value=1.5e+02 Score=22.25 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhC
Q 026514 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAE---DELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (237)
Q Consensus 146 all~~ae~~V~eLr~svdllk~Es~KL~era~~AE---~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lr 219 (237)
.+|..-+.||..+=.+|.++.-|.+-|.+--.... .+...||-.|...-.+++.-.. ....+-.+|++.+.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~---~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN---GWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Confidence 47888899999999999999999998875543322 3556677777776666665443 33455556666544
No 36
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.40 E-value=1.8e+02 Score=22.92 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHH
Q 026514 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDE-------LIRGRTKLRQAGKQIQ 198 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E-------~~RGrtkLr~ag~qIq 198 (237)
|+++..+|+..++.+..|...+.........| |++--++||..-..++
T Consensus 1 ~Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~ 55 (111)
T 2v66_B 1 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 55 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888777665555544 6666666666655443
No 37
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.74 E-value=3.3e+02 Score=25.94 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=42.5
Q ss_pred HhhhhhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHH----HHHHHHHHHHHHHHHH
Q 026514 136 NTLRLFASEE--SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRG--RTKLR----QAGKQIQGVINSAYKI 207 (237)
Q Consensus 136 ~TlgrF~SEE--all~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RG--rtkLr----~ag~qIq~l~~s~yk~ 207 (237)
+-..|+.+.+ +-+...+.+..++...++.+++|...+-+....+ ++.| ...|+ +-+.+|..+-.....+
T Consensus 21 ~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~---k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 21 SQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR---FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555433 3344455556666666666666655555433221 1112 22344 4455555566666666
Q ss_pred HHHHhhhHHhhCcCC
Q 026514 208 ERQAAGLKDIVGELP 222 (237)
Q Consensus 208 E~~A~gL~d~LrelP 222 (237)
|.+-..++-.|-.||
T Consensus 98 ~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 98 DKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHhCCCCC
Confidence 666655555555554
No 38
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=32.70 E-value=2.3e+02 Score=24.04 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=18.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhC
Q 026514 182 ELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (237)
Q Consensus 182 E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lr 219 (237)
++..=+..|.++-.++..+-..+-..+.+-..+...|.
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333455555555555555544444444444444443
No 39
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=32.10 E-value=90 Score=28.13 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 026514 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDI 217 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~ 217 (237)
.+.++.+|...|+.+.++..+++++ |+-+.++||-+|+..+.++..
T Consensus 214 Td~k~~~l~n~I~~V~n~~~q~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T 2yo3_A 214 TDQKMGEMNSKIKGVENKMKQIEDK---------------------IEEILSKIYHIENEIARIKKL 259 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhh
Confidence 4456667777777777766666665 677888999999988876643
No 40
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.66 E-value=67 Score=24.52 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDE 182 (237)
Q Consensus 152 e~~V~eLr~svdllk~Es~KL~era~~AE~E 182 (237)
+.+..|+...||.++.|+.|+..-.+.+|..
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6677788888888888888888776666543
No 41
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.54 E-value=66 Score=20.80 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 149 SRADTKVKQLRQSIDRLKAESEKLEK 174 (237)
Q Consensus 149 ~~ae~~V~eLr~svdllk~Es~KL~e 174 (237)
+.-|.+|++|-..-..+.+|..+|.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45688999999999999999988865
No 42
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=31.37 E-value=2.3e+02 Score=29.24 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026514 154 KVKQLRQSIDRLKAESE 170 (237)
Q Consensus 154 ~V~eLr~svdllk~Es~ 170 (237)
.++++...++.+..|..
T Consensus 879 ~l~ele~~l~~Le~e~~ 895 (1184)
T 1i84_S 879 ELKELEQKHTQLCEEKN 895 (1184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334443333333333
No 43
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.21 E-value=4e+02 Score=26.38 Aligned_cols=99 Identities=11% Similarity=0.178 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhhhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhChhhHHHHHHHHHHhhccCc
Q 026514 53 IDSAIEASRSRLSQT---RLTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAASHPFITAGGAIGLGSFLLKRP 129 (237)
Q Consensus 53 ~d~ai~aa~s~~s~~---~~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A~shP~~a~g~a~~aglllLr~P 129 (237)
+..-|.--|+++.+| +.++-++|+++.|+|..-..+-+..++ .++.|-+.|+
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN-tynE~S~ELR------------------------ 116 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN-TYNRVSEDLR------------------------ 116 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH-HHHHTTHHHH------------------------
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHH------------------------
Confidence 334444455555444 445556777777888666666666666 5555544443
Q ss_pred hhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026514 130 RHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRG 186 (237)
Q Consensus 130 RRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RG 186 (237)
|++.|= ++.+-+.. ++..-|+..|+.+..|+|||+-- ..+-.+.=||
T Consensus 117 RrIqyL--------KekVdnQl-snIrvLQsnLedq~~kIQRLEvD-IdiqirsCKg 163 (562)
T 3ghg_A 117 SRIEVL--------KRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVD-IDIKIRSCRG 163 (562)
T ss_dssp HHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHGGG
T ss_pred HHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccc
Confidence 222221 35555666 77889999999999999999854 3444444444
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.43 E-value=3.1e+02 Score=24.87 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=8.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026514 66 QTRLTASVHFQQTLDYLQDVKSEYAAYEDA 95 (237)
Q Consensus 66 ~~~~~ss~h~~~~~d~l~~~~sey~~yEd~ 95 (237)
++...++.+-.+.++.+.+...+.+..+..
T Consensus 442 ~~~~~~~~~~e~l~~e~~~~~~~i~~l~~~ 471 (597)
T 3oja_B 442 QQGGVPLQGNEQLEAEVNELRAEVQQLTNE 471 (597)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH
T ss_pred HHhhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 45
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.16 E-value=2.5e+02 Score=23.79 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHhhCcC
Q 026514 156 KQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQ----IQGVINSAYKIERQAAGLKDIVGEL 221 (237)
Q Consensus 156 ~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~q----Iq~l~~s~yk~E~~A~gL~d~Lrel 221 (237)
.+|-..++.+.+-.+.|..+......|...-++|+.+...+ |..|=+.+-..-..-..|.-.||+|
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 46
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.05 E-value=2.2e+02 Score=24.49 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=38.8
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 026514 140 LFASEESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQA 193 (237)
Q Consensus 140 rF~SEEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~a 193 (237)
|+.+-+-|+..-+.+..-|++.++....|++.|.+..+.++.+...-...+...
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~ 67 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQ 67 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 444556677888888888899999999999999998888888887655555433
No 47
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.35 E-value=1.6e+02 Score=21.00 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhC
Q 026514 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVG 219 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~Lr 219 (237)
..+++..|+...|........+....-.+|+....+-..+.+--+-|+.+-.-+=+.+.+.......|.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666666777777776666666666665555553
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.22 E-value=2.3e+02 Score=22.57 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026514 152 DTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIE 208 (237)
Q Consensus 152 e~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E 208 (237)
..++..|...++.+.+|...|..-...+..++--=.-++...-+++..|-..+-+.|
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444444433333333222222333333344444444444444
No 49
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.90 E-value=2e+02 Score=26.30 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 026514 157 QLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLR 191 (237)
Q Consensus 157 eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr 191 (237)
.|+..++.++.+.++|++....++.++..=..+|+
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333333
No 50
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=27.43 E-value=1.8e+02 Score=24.39 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=14.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 180 EDELIRGRTKLRQAGKQIQGVINSAYKIERQ 210 (237)
Q Consensus 180 E~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~ 210 (237)
+.++..=++.+..+-.+|+.+-..+-..+.+
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~ 143 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQAS 143 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544444333333
No 51
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.37 E-value=1.2e+02 Score=19.58 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEK 174 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~e 174 (237)
.+.-|.+|++|-.....+.+|..+|.+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356788999999999999999888865
No 52
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.79 E-value=2.4e+02 Score=26.95 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 145 ESLLSRADTKVKQLRQSIDRLKAESEKL 172 (237)
Q Consensus 145 Eall~~ae~~V~eLr~svdllk~Es~KL 172 (237)
+........++++|+...+.+++++.++
T Consensus 39 d~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 39 YKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555443
No 53
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.28 E-value=1.1e+02 Score=23.64 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHH----------HHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 026514 153 TKVKQLRQSIDRLKAESEKLEKVALVAEDELIR----GRTKL----------RQAGKQIQGVINSAYKIERQAAGLKDIV 218 (237)
Q Consensus 153 ~~V~eLr~svdllk~Es~KL~era~~AE~E~~R----GrtkL----------r~ag~qIq~l~~s~yk~E~~A~gL~d~L 218 (237)
..|..|+..|+-|..|..+|.++-..-|-++-+ |--+- -=+.-..+..-+.+-+......+|+..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999998777777765 43211 0011222233355556666666677766
Q ss_pred CcC
Q 026514 219 GEL 221 (237)
Q Consensus 219 rel 221 (237)
+-|
T Consensus 92 ~~l 94 (100)
T 1go4_E 92 RAM 94 (100)
T ss_dssp TTC
T ss_pred HHH
Confidence 655
No 54
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=25.44 E-value=20 Score=23.15 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 154 KVKQLRQSIDRLKAESEKLEKVALVAEDEL 183 (237)
Q Consensus 154 ~V~eLr~svdllk~Es~KL~era~~AE~E~ 183 (237)
.+..++.+|..+..+...+++++..++.++
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777777777666554
No 55
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=25.33 E-value=3.5e+02 Score=23.77 Aligned_cols=131 Identities=19% Similarity=0.213 Sum_probs=74.0
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 026514 33 PWIDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTR---LTASVHFQQTLDYLQDVKSEYAAYEDAAVGKVKEGIHVAAS 109 (237)
Q Consensus 33 ~wi~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~---~~ss~h~~~~~d~l~~~~sey~~yEd~~f~kiKegv~~A~s 109 (237)
|=.---+++--.-.|++..+.+.+-+-.+.-=+||. .+.-.-..-.-|-|-.+..++...|+.|-...
T Consensus 19 pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~edddl~DIsdklgvLl~e~ge~e~~~a~~~--------- 89 (234)
T 3plt_A 19 PELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQFIDKY--------- 89 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 433334444445566666666655444333222222 22223344444455555566666666554433
Q ss_pred ChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q 026514 110 HPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLSRADTKVKQLRQSIDRLKAESEKLE------KVALVAEDEL 183 (237)
Q Consensus 110 hP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~~ae~~V~eLr~svdllk~Es~KL~------era~~AE~E~ 183 (237)
==||.+|--.+ ..|..|...|.--+-+..++.||. .+....|.|+
T Consensus 90 ----------------------d~yR~~LK~IR-------~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqEL 140 (234)
T 3plt_A 90 ----------------------DQYRVTLKSIR-------NIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQEL 140 (234)
T ss_dssp ----------------------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 12455554433 345666666666666677777776 5677888888
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 026514 184 IRGRTKLRQAGKQIQGVI 201 (237)
Q Consensus 184 ~RGrtkLr~ag~qIq~l~ 201 (237)
.|.-.....+-.||-++=
T Consensus 141 vraEae~lvaEAqL~n~k 158 (234)
T 3plt_A 141 VRAEAESLVAEAQLSNIT 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhH
Confidence 888888888888885543
No 56
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=24.82 E-value=2.3e+02 Score=21.44 Aligned_cols=44 Identities=25% Similarity=0.176 Sum_probs=34.6
Q ss_pred HHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHhhCcCCc
Q 026514 180 EDELIRGRTKLRQAGKQ----IQGVINSAYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 180 E~E~~RGrtkLr~ag~q----Iq~l~~s~yk~E~~A~gL~d~LrelP~ 223 (237)
|-.|+.|--+|+.+-.. ...+..-+..+.++-..|++.|.+|.+
T Consensus 37 ElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 37 ELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677888888877655 778888888888999999999887754
No 57
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.02 E-value=3.6e+02 Score=25.08 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhCcCCc
Q 026514 147 LLSRADTKVKQLRQSIDRLKAESEKLEKVALVA--E-DELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIVGELPR 223 (237)
Q Consensus 147 ll~~ae~~V~eLr~svdllk~Es~KL~era~~A--E-~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~LrelP~ 223 (237)
-+...+.+..++...++.+++|..++-+....+ . ++...=..+.++-+.+|..+-.....+|.+-..++-.|-.||.
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~ 111 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITH 111 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344455555566666666666655555443221 0 1111112334445556666777777777776666655555553
No 58
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=23.84 E-value=2.1e+02 Score=21.02 Aligned_cols=50 Identities=30% Similarity=0.420 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Q 026514 161 SIDRLKAESEKLEKVAL--------VAEDELIRGRTKLRQAGKQIQGVINSAYKIERQAAGLKDIV 218 (237)
Q Consensus 161 svdllk~Es~KL~era~--------~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E~~A~gL~d~L 218 (237)
.++.+|+|++||..+|. ++|+ +=-||.+|.. ++..+|.+=.....++..|
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd-LP~~w~~i~~-------vA~~tyda~~~l~~ak~~L 61 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED-LPTGWNRIME-------VAEKTYEAYRQLDEFRKST 61 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTTSGGGHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc-chhhHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 46778999999987775 4564 6677776655 4445555544444444443
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.28 E-value=4.2e+02 Score=23.61 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 026514 166 KAESEKLEKVALVAEDELIRGRTKLRQ 192 (237)
Q Consensus 166 k~Es~KL~era~~AE~E~~RGrtkLr~ 192 (237)
.+|.++..+++..-++.+++=-.+|+.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHH
Confidence 333444444444444444443344444
No 60
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=21.76 E-value=1.7e+02 Score=22.35 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 026514 151 ADTKVKQLRQSIDRLKAESEK-LEKVALVAED 181 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (237)
+.....+||..||.+-.++-+ |.+|+.++.+
T Consensus 10 ~~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~ 41 (114)
T 3rmi_A 10 ILSELAYLRQSIDNFDITLIHILAERFRCTQA 41 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999 5578777654
No 61
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.19 E-value=1.8e+02 Score=18.90 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 148 LSRADTKVKQLRQSIDRLKAESEKLEKV 175 (237)
Q Consensus 148 l~~ae~~V~eLr~svdllk~Es~KL~er 175 (237)
++.-+.||++|-..-..+.+|..+|.+-
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4667788888888888888888877653
No 62
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=20.72 E-value=1.5e+02 Score=21.10 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 026514 154 KVKQLRQSIDRLKAESEK-LEKVALVAED 181 (237)
Q Consensus 154 ~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (237)
...+||..||.+-.++-+ |.+|+.++++
T Consensus 4 ~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~ 32 (90)
T 2d8d_A 4 RIQALRKEVDRVNREILRLLSERGRLVQE 32 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999 5588877765
No 63
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.71 E-value=2.5e+02 Score=25.03 Aligned_cols=57 Identities=18% Similarity=0.096 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 026514 151 ADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQIQGVINSAYKIE 208 (237)
Q Consensus 151 ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~E 208 (237)
+..-.++|++.++.+.++..|+++... ...+-++=..++++.-+||.+.-+.++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIE-KRPENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888887652 111223446789999999999988888654
No 64
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=20.21 E-value=2.6e+02 Score=22.18 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 026514 153 TKVKQLRQSIDRLKAESEKLEK---VALVAEDELIRGRTKLRQAGKQIQGVINSAYKI 207 (237)
Q Consensus 153 ~~V~eLr~svdllk~Es~KL~e---ra~~AE~E~~RGrtkLr~ag~qIq~l~~s~yk~ 207 (237)
.+|++++..|+.++.-.+.|.+ .+..+-.+...+..++...-.+|..++..+...
T Consensus 47 ~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 104 (279)
T 3c98_B 47 EQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSK 104 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655544433 222222233344445555555555555554443
Done!