Query 026514
Match_columns 237
No_of_seqs 31 out of 33
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 15:23:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026514.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026514hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k4ta1 a.2.8.1 (A:641-712) Eu 78.3 6.5 0.00047 27.6 8.2 60 154-213 3-67 (72)
2 d1krqa_ a.25.1.1 (A:) Non-hem 37.9 68 0.005 23.3 8.3 38 35-76 83-120 (165)
3 d2d8da1 a.130.1.1 (A:3-82) Cho 26.3 50 0.0036 21.6 4.7 28 154-181 2-30 (80)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 26.2 97 0.0071 21.5 6.6 40 144-184 87-126 (133)
5 d1ybza1 a.130.1.1 (A:2-75) mon 25.7 52 0.0038 21.6 4.7 28 154-181 2-30 (74)
6 d1rcda_ a.25.1.1 (A:) (Apo)fer 21.4 1.4E+02 0.01 21.6 9.8 56 35-100 91-147 (171)
7 d1seta1 a.2.7.1 (A:1-110) Sery 21.0 1.2E+02 0.0087 20.6 9.9 74 146-222 28-105 (110)
8 d1ecma_ a.130.1.1 (A:) Chorism 20.9 71 0.0052 21.1 4.7 28 154-181 2-30 (91)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 20.9 96 0.007 21.2 5.6 96 72-192 7-104 (107)
10 d1jt6a2 a.121.1.1 (A:73-187) M 20.6 71 0.0052 22.5 4.9 57 79-141 38-97 (115)
No 1
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.30 E-value=6.5 Score=27.58 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 026514 154 KVKQLRQSIDRLKAESEKLEKVALVAEDELI-RGRTKLRQ----AGKQIQGVINSAYKIERQAAG 213 (237)
Q Consensus 154 ~V~eLr~svdllk~Es~KL~era~~AE~E~~-RGrtkLr~----ag~qIq~l~~s~yk~E~~A~g 213 (237)
.|.-|+..|+.-+..+.-...-.--|..+++ +|-.+.+. -.+++++|-....|+|-||++
T Consensus 3 sMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL~KLevqaTD 67 (72)
T d1k4ta1 3 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATD 67 (72)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4555555555555544444444444445555 56555444 678999999999999999986
No 2
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]}
Probab=37.87 E-value=68 Score=23.30 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHH
Q 026514 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQ 76 (237)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~ 76 (237)
+..++.+|+-+.+.+.+++...++.|.. ..|..+.||=
T Consensus 83 ~~~~l~~al~~E~~v~~~~~~l~~~A~~----~~D~~t~~fl 120 (165)
T d1krqa_ 83 LLDVFEKTYEHEQFITKSINTLVEHMLT----HKDYSTFNFL 120 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHH
Confidence 6789999999999999999999999987 6676665554
No 3
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=26.28 E-value=50 Score=21.55 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 026514 154 KVKQLRQSIDRLKAESEK-LEKVALVAED 181 (237)
Q Consensus 154 ~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (237)
+.++||..||.+-.|+-. |.+|+.++.+
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll~~R~~~~~~ 30 (80)
T d2d8da1 2 RIQALRKEVDRVNREILRLLSERGRLVQE 30 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999 5577777643
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.16 E-value=97 Score=21.46 Aligned_cols=40 Identities=5% Similarity=0.248 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026514 144 EESLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELI 184 (237)
Q Consensus 144 EEall~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~ 184 (237)
+|+ ..-.+++.++|+..++.+.++.+++.+.....+.++.
T Consensus 87 ~eA-~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~ 126 (133)
T d1fxkc_ 87 EDA-MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 4567888888888888888888888877665555544
No 5
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=25.74 E-value=52 Score=21.55 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 026514 154 KVKQLRQSIDRLKAESEK-LEKVALVAED 181 (237)
Q Consensus 154 ~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (237)
..++||..||.+-.|+-. |.+|+.++.+
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll~~R~~~~~~ 30 (74)
T d1ybza1 2 TLKLLRKEIDKIDNQIISLLKKRLEIAQA 30 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999 5688777764
No 6
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]}
Probab=21.35 E-value=1.4e+02 Score=21.62 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 026514 35 IDNAVQQVMIYRKIVEESIDSAIEASRSRLSQTRLTASVHFQQTLDYLQ-DVKSEYAAYEDAAVGKV 100 (237)
Q Consensus 35 i~~a~~qa~~~qk~~~es~d~ai~aa~s~~s~~~~~ss~h~~~~~d~l~-~~~sey~~yEd~~f~ki 100 (237)
+..+++.|+-+.|.+.++....++.|.. ..|-- +.+||+ ++..+-...|+.+=+.|
T Consensus 91 ~~e~~~~al~~Ek~v~~~l~~l~~~a~~----~~D~~------~~~fle~~fl~eQ~e~~~~l~~~l 147 (171)
T d1rcda_ 91 GLEALQTALKLQKSVNQALLDLHAVAAD----KSDPH------MTDFLESPYLSESVETIKKLGDHI 147 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHH------HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999998875 44433 344554 35555555555444333
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=20.97 E-value=1.2e+02 Score=20.60 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHhhCcC
Q 026514 146 SLLSRADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQAGKQ----IQGVINSAYKIERQAAGLKDIVGEL 221 (237)
Q Consensus 146 all~~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ag~q----Iq~l~~s~yk~E~~A~gL~d~Lrel 221 (237)
.-|...+.+..++.+.++.+++|...+-+....+-. -|...|.+.+++ |..+-...-.+|.+-..++-.|--|
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~---~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi 104 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPP---EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 445667778888888888888887777655433211 134455555544 4444444455555444444444444
Q ss_pred C
Q 026514 222 P 222 (237)
Q Consensus 222 P 222 (237)
|
T Consensus 105 ~ 105 (110)
T d1seta1 105 P 105 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=20.93 E-value=71 Score=21.13 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 026514 154 KVKQLRQSIDRLKAESEK-LEKVALVAED 181 (237)
Q Consensus 154 ~V~eLr~svdllk~Es~K-L~era~~AE~ 181 (237)
...+||..||.+-.++-. |.+|+.++++
T Consensus 2 ~L~~lR~~ID~iD~~i~~Ll~~R~~l~~~ 30 (91)
T d1ecma_ 2 PLLALREKISALDEKLLALLAERRELAVE 30 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999 5578777754
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.89 E-value=96 Score=21.20 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHhhhChhhHHHHHHHHHHhhccCchhHHHHHhhhhhcChHHHHH
Q 026514 72 SVHFQQTLDYLQDVKSEYAAYEDAAV--GKVKEGIHVAASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLFASEESLLS 149 (237)
Q Consensus 72 s~h~~~~~d~l~~~~sey~~yEd~~f--~kiKegv~~A~shP~~a~g~a~~aglllLr~PRRfLyr~TlgrF~SEEall~ 149 (237)
.+.|.+++..+..+.++...+|...= ..+.+.+.-.. |...+= =..|=+|++.|+
T Consensus 7 ~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~--~d~~vy--k~vG~vLv~~~~------------------- 63 (107)
T d1fxka_ 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA--DDAEVY--KSSGNILIRVAK------------------- 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--TTCCEE--EEETTEEEEECH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cccHHH--HHhcchhhcCcH-------------------
Confidence 45677777777777777776665432 22222222221 111110 112223344443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 026514 150 RADTKVKQLRQSIDRLKAESEKLEKVALVAEDELIRGRTKLRQ 192 (237)
Q Consensus 150 ~ae~~V~eLr~svdllk~Es~KL~era~~AE~E~~RGrtkLr~ 192 (237)
+.-...|...++.+..++++|.+....-+++|..=+.+|+.
T Consensus 64 --~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 64 --DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345566777777777777777766666666665555543
No 10
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=20.57 E-value=71 Score=22.48 Aligned_cols=57 Identities=12% Similarity=-0.057 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHh---hhChhhHHHHHHHHHHhhccCchhHHHHHhhhhh
Q 026514 79 LDYLQDVKSEYAAYEDAAVGKVKEGIHVA---ASHPFITAGGAIGLGSFLLKRPRHFLYYNTLRLF 141 (237)
Q Consensus 79 ~d~l~~~~sey~~yEd~~f~kiKegv~~A---~shP~~a~g~a~~aglllLr~PRRfLyr~TlgrF 141 (237)
.+.++.+..-.+.||+.|-.-|++|+.-- ..+|-+++-...++.--+ ..|++.-|++
T Consensus 38 ~e~~~~i~~lr~~y~~~~~~Ii~eGi~~G~f~~~d~~~~~~~il~~lng~------~~Wy~~~g~~ 97 (115)
T d1jt6a2 38 NSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKIAANAVNGI------VTFTHEQNIN 97 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSCHHHHHHHHHHHHHHH------HHSCTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCceeccCHHHHHHHHHHHHHHH------HHHhccCCCC
Confidence 46678888889999999999999999643 447766654433332211 2355555665
Done!