BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026515
         (237 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana
           GN=At3g50808 PE=4 SV=1
          Length = 110

 Score = 38.5 bits (88), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 76  IQKFIDISCVQTYIINSAKIVFLNER---PQPRPGKGVTNTCEICCRSL--LDSFRFCSL 130
           + +++DIS +  Y IN   IV++N+R      R    V + C+IC   +    S  FCS+
Sbjct: 1   MSQYMDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSM 60

Query: 131 GCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIRR 173
            CK  ++    LD    L     +      E DE    K+ RR
Sbjct: 61  ECKFRSVLGSQLD---ELMENSSEVTEISEEIDEPVMKKRHRR 100


>sp|Q8K3G5|VRK3_MOUSE Inactive serine/threonine-protein kinase VRK3 OS=Mus musculus
           GN=Vrk3 PE=1 SV=2
          Length = 453

 Score = 32.7 bits (73), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 114 CEICCRSLLDSFRFCSL-GCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIR 172
           C +C +S+  SF+FC   G  L   + G      T  V    G      S   ++PKK++
Sbjct: 5   CPVCGKSVKVSFKFCPYCGKALPVEEDGGTQSAVTPHVSSVPGSRRDLNSSFETSPKKVK 64

Query: 173 RTPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGDEAT-TKLSPATP 217
                +  +  L + RHS  +++ G++ + +S D AT T+  P TP
Sbjct: 65  ----CSHTVTSLPLSRHSDCDSS-GSDNTLTSPDRATGTRSRPLTP 105


>sp|Q5JQC9|AKAP4_HUMAN A-kinase anchor protein 4 OS=Homo sapiens GN=AKAP4 PE=2 SV=1
          Length = 854

 Score = 30.8 bits (68), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 147 TLRVKHKDGFHGGSESDESSTPKKIRRTPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGD 206
           T++ + K+   G  +SD   +     +    + L EGLTI+     N+ + A ++CS+ D
Sbjct: 469 TMKAEMKERDKGKMKSDPCKSLTSAEKVGE-HILKEGLTIWNQKQGNSCKVATKACSNKD 527

Query: 207 EATTKLSPAT 216
           E   K++ +T
Sbjct: 528 EKGEKINAST 537


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,194,901
Number of Sequences: 539616
Number of extensions: 3794946
Number of successful extensions: 7308
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7305
Number of HSP's gapped (non-prelim): 7
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)