Query 026515
Match_columns 237
No_of_seqs 146 out of 189
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:24:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8u_A Ubiquitin ligase TRIM63 95.3 0.0084 2.9E-07 41.3 2.2 37 22-62 10-48 (64)
2 2yvr_A Transcription intermedi 95.1 0.0082 2.8E-07 39.7 1.8 37 22-62 8-45 (50)
3 3ddt_A E3 ubiquitin-protein li 95.1 0.011 3.9E-07 38.9 2.5 39 20-62 6-46 (48)
4 1fre_A Nuclear factor XNF7; zi 93.8 0.037 1.3E-06 35.2 2.5 35 22-61 5-41 (42)
5 2did_A Tripartite motif protei 93.7 0.037 1.3E-06 36.9 2.6 36 22-62 10-47 (53)
6 2yrg_A Tripartite motif-contai 92.1 0.084 2.9E-06 36.4 2.5 36 22-62 16-53 (59)
7 2csv_A Tripartite motif protei 91.9 0.069 2.4E-06 37.8 2.0 36 22-62 20-56 (72)
8 2dja_A Midline-2; tripartite m 91.6 0.06 2.1E-06 38.8 1.4 38 22-63 20-59 (84)
9 2egm_A Tripartite motif-contai 90.0 0.053 1.8E-06 37.3 -0.2 35 22-61 20-56 (57)
10 2jun_A Midline-1; B-BOX, TRIM, 89.9 0.11 3.7E-06 38.3 1.4 38 21-62 60-99 (101)
11 2w0t_A Lethal(3)malignant brai 84.8 0.16 5.6E-06 34.3 -0.2 25 109-133 4-34 (43)
12 2das_A Zinc finger MYM-type pr 81.9 0.74 2.5E-05 33.3 2.2 31 104-134 13-53 (62)
13 2l8e_A Polyhomeotic-like prote 65.7 0.77 2.6E-05 31.5 -1.1 24 111-134 18-46 (49)
14 2jun_A Midline-1; B-BOX, TRIM, 61.2 3.5 0.00012 30.0 1.7 35 22-57 5-40 (101)
15 1lv3_A Hypothetical protein YA 60.6 1.8 6.1E-05 31.7 -0.0 29 111-139 9-42 (68)
16 3ny3_A E3 ubiquitin-protein li 50.0 9.6 0.00033 27.9 2.4 30 30-59 12-46 (75)
17 3nis_A E3 ubiquitin-protein li 47.5 11 0.00038 28.0 2.5 30 30-59 16-50 (82)
18 2hiy_A Hypothetical protein; C 46.7 6.8 0.00023 32.6 1.3 33 68-101 19-54 (183)
19 2ffw_A Midline-1; B-BOX, ring 38.9 12 0.00043 26.8 1.5 34 22-56 32-66 (78)
20 1tot_A CREB-binding protein; z 33.4 20 0.00067 24.3 1.8 27 36-63 20-48 (52)
21 2fc7_A ZZZ3 protein; structure 26.3 31 0.001 25.4 1.9 30 36-65 37-76 (82)
22 2dip_A Zinc finger SWIM domain 24.2 17 0.00058 27.7 0.1 29 36-64 47-77 (98)
23 2yqq_A Zinc finger HIT domain- 24.2 26 0.0009 24.4 1.1 23 111-134 12-40 (56)
24 2yqp_A Probable ATP-dependent 23.0 35 0.0012 24.4 1.5 28 111-138 19-51 (60)
25 2nrr_A Uvrabc system protein C 22.1 14 0.00047 30.8 -0.8 27 78-104 21-47 (159)
No 1
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.26 E-value=0.0084 Score=41.30 Aligned_cols=37 Identities=35% Similarity=0.758 Sum_probs=29.5
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 026515 22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI 62 (237)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 62 (237)
.|..|.. ...++||.+|.. .+|..|.. .|++|+++-|
T Consensus 10 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 48 (64)
T 2d8u_A 10 MCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL 48 (64)
T ss_dssp CCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred cCcCcCC---CccceEcCcCCc-eeCccccCCCcCCCCCeeCH
Confidence 6999954 247899999997 89999963 7999977654
No 2
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=95.13 E-value=0.0082 Score=39.71 Aligned_cols=37 Identities=32% Similarity=0.665 Sum_probs=29.2
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 026515 22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI 62 (237)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI 62 (237)
.|..|.. ...++||.+|.. .+|..|.. .|++|+++.|
T Consensus 8 ~C~~H~~---e~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l 45 (50)
T 2yvr_A 8 YCNVHKH---EPLVLFCESCDT-LTCRDCQLNAHKDHQYQFL 45 (50)
T ss_dssp BCSSSTT---CBCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred cCcCCCC---CCEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence 5999954 247899999987 89999964 7999877654
No 3
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=95.13 E-value=0.011 Score=38.87 Aligned_cols=39 Identities=33% Similarity=0.632 Sum_probs=30.5
Q ss_pred CCCCccCCCCCCCCcceecccCCCccCCcchh--cCCCCCceeEE
Q 026515 20 FIPCVVHGDSNKSECNMFCLDCMGNAFCSYCL--INHKDHRVVQI 62 (237)
Q Consensus 20 F~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQI 62 (237)
...|..|.. -..++||.+|.. .+|..|. ..|++|+++.|
T Consensus 6 ~~~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 6 HPMCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp SCBCSSSTT---SBCCEEETTTTE-EECHHHHHHSTTTTSCEEEC
T ss_pred CCcCCCCCC---ccccEEcCCCCe-eEcccccCCCcCCCCcEEeC
Confidence 357999953 236799999987 8999996 37999988764
No 4
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=93.80 E-value=0.037 Score=35.19 Aligned_cols=35 Identities=23% Similarity=0.519 Sum_probs=28.4
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeE
Q 026515 22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ 61 (237)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ 61 (237)
.|..|. ....+||.+|.. .+|..|.. .|++|+++.
T Consensus 5 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHD----ERLKLYCKDDGT-LSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSC----SSCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred cchhhC----CeeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence 599995 247799999987 89999964 799998754
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=93.72 E-value=0.037 Score=36.94 Aligned_cols=36 Identities=33% Similarity=0.729 Sum_probs=29.4
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 026515 22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI 62 (237)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 62 (237)
.|..|. ....+||.+|.. .+|..|.. .|++|+++-|
T Consensus 10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence 699995 247799999987 89999964 7999987665
No 6
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.14 E-value=0.084 Score=36.41 Aligned_cols=36 Identities=25% Similarity=0.614 Sum_probs=29.7
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 026515 22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI 62 (237)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 62 (237)
.|..|.. ...+||.+|.. .+|..|.. .|++|+++.|
T Consensus 16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence 6999953 47799999987 89999964 7999988765
No 7
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=91.93 E-value=0.069 Score=37.75 Aligned_cols=36 Identities=33% Similarity=0.838 Sum_probs=28.9
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 026515 22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI 62 (237)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI 62 (237)
.|..|. ....+||.+|.. .+|..|.. .|++|+++-|
T Consensus 20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEecH
Confidence 799994 247799999987 89999965 7988876654
No 8
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=91.64 E-value=0.06 Score=38.83 Aligned_cols=38 Identities=29% Similarity=0.804 Sum_probs=30.1
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEEE
Q 026515 22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQIR 63 (237)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQIR 63 (237)
.|..|.. -..++||.+|.. .+|..|.. .|++|+++-|-
T Consensus 20 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l~ 59 (84)
T 2dja_A 20 TCLDHEN---EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASLN 59 (84)
T ss_dssp CCSSCSS---SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCCC
T ss_pred cCcCcCC---ccccEEcCCCCc-eEcccCcCCCCCCCCCccCHH
Confidence 6999943 237799999987 89999964 79999876653
No 9
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.99 E-value=0.053 Score=37.27 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=28.5
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeE
Q 026515 22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ 61 (237)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ 61 (237)
.|..|. ....+||.+|.. .+|..|.. .|++|+++.
T Consensus 20 ~C~~H~----e~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQ----EALKLFCEVDEE-AICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTC----CBCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred cChhhC----ceeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence 599994 247799999987 89999964 799998764
No 10
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.87 E-value=0.11 Score=38.35 Aligned_cols=38 Identities=32% Similarity=0.763 Sum_probs=29.7
Q ss_pred CCCccCCCCCCCCcceecccCCCccCCcchh--cCCCCCceeEE
Q 026515 21 IPCVVHGDSNKSECNMFCLDCMGNAFCSYCL--INHKDHRVVQI 62 (237)
Q Consensus 21 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQI 62 (237)
..|..|.. ...++||.+|.. .+|..|. ..|++|+++.|
T Consensus 60 ~~C~~H~~---e~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~l 99 (101)
T 2jun_A 60 LMCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAAL 99 (101)
T ss_dssp CCCSSCSS---SCCCEEETTTTE-EECHHHHHHTTTSSSCBCCC
T ss_pred CcCcCcCC---CcceEECCCCCC-ccchhcCCCCCcCCCCeecC
Confidence 36999953 237899999987 8999996 48999987543
No 11
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=84.79 E-value=0.16 Score=34.30 Aligned_cols=25 Identities=32% Similarity=0.781 Sum_probs=18.4
Q ss_pred CCCCcccccccc-cCC-----CCeeeeeccc
Q 026515 109 GVTNTCEICCRS-LLD-----SFRFCSLGCK 133 (237)
Q Consensus 109 g~~~~Ce~C~R~-L~D-----~~rFCSL~CK 133 (237)
+....||.|++. +.. +-||||++|-
T Consensus 4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca 34 (43)
T 2w0t_A 4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS 34 (43)
T ss_dssp CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred CceehhhhhcCcchhhhhccCCcceechhhh
Confidence 445689999984 333 4599999994
No 12
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=81.87 E-value=0.74 Score=33.30 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=25.1
Q ss_pred CCCCCCCCCcccccccccCC----------CCeeeeecccc
Q 026515 104 PRPGKGVTNTCEICCRSLLD----------SFRFCSLGCKL 134 (237)
Q Consensus 104 ~r~~kg~~~~Ce~C~R~L~D----------~~rFCSL~CKv 134 (237)
.++.+...-+|+.|.+.|+. +-.|||..|-.
T Consensus 13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~ 53 (62)
T 2das_A 13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62)
T ss_dssp CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred cCCCCccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence 55667788899999999973 35899999953
No 13
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=65.68 E-value=0.77 Score=31.50 Aligned_cols=24 Identities=38% Similarity=0.718 Sum_probs=19.2
Q ss_pred CCcccccccccCC-----CCeeeeecccc
Q 026515 111 TNTCEICCRSLLD-----SFRFCSLGCKL 134 (237)
Q Consensus 111 ~~~Ce~C~R~L~D-----~~rFCSL~CKv 134 (237)
..+|+.|++.+.. +-+|||..|.-
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR~ 46 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCAK 46 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHHh
Confidence 3579999999863 25999999973
No 14
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=61.22 E-value=3.5 Score=30.03 Aligned_cols=35 Identities=20% Similarity=0.578 Sum_probs=25.3
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhcC-CCCC
Q 026515 22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLIN-HKDH 57 (237)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~~-H~~H 57 (237)
.|..-.+..+.+...+|++|.. .||..|+.. |..-
T Consensus 5 ~C~~C~~~~~~~av~~C~~C~~-~~C~~Cl~~~h~~~ 40 (101)
T 2jun_A 5 LCQFCDQDPAQDAVKTCVTCEV-SYCDECLKATHPNK 40 (101)
T ss_dssp BCTTCCSSSCCBCCEEETTTTE-EECHHHHHHHSCSC
T ss_pred CCcCCCCCCCCCceEECCcCCh-HHhHHHCHHHhccC
Confidence 3554443334577899999987 899999996 8743
No 15
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=60.63 E-value=1.8 Score=31.71 Aligned_cols=29 Identities=28% Similarity=0.607 Sum_probs=22.4
Q ss_pred CCcccccccccC-----CCCeeeeeccccCeeec
Q 026515 111 TNTCEICCRSLL-----DSFRFCSLGCKLGAMKR 139 (237)
Q Consensus 111 ~~~Ce~C~R~L~-----D~~rFCSL~CKv~~~~~ 139 (237)
+..|-+|++... .-..|||-.||...+.+
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg~ 42 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGE 42 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSC
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhhHHH
Confidence 347999999985 23599999999766553
No 16
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=50.03 E-value=9.6 Score=27.89 Aligned_cols=30 Identities=33% Similarity=0.747 Sum_probs=22.7
Q ss_pred CCCCcceecccCCCc---cCCcchhc--CCCCCce
Q 026515 30 NKSECNMFCLDCMGN---AFCSYCLI--NHKDHRV 59 (237)
Q Consensus 30 ~knE~N~FCldC~~~---~~C~~Cl~--~H~~Hrv 59 (237)
+++|-...|.+|..+ ++|..|-. .|.+|++
T Consensus 12 ~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~ 46 (75)
T 3ny3_A 12 KVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRY 46 (75)
T ss_dssp CTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCE
T ss_pred cCCCEEEECccCCCCCCeeEChHHCCCCCcCCceE
Confidence 467888899999865 46666644 6999975
No 17
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=47.53 E-value=11 Score=28.04 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=22.3
Q ss_pred CCCCcceecccCCCc---cCCcchhc--CCCCCce
Q 026515 30 NKSECNMFCLDCMGN---AFCSYCLI--NHKDHRV 59 (237)
Q Consensus 30 ~knE~N~FCldC~~~---~~C~~Cl~--~H~~Hrv 59 (237)
.++|--..|.+|..+ +||..|-. .|.+|++
T Consensus 16 ~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~ 50 (82)
T 3nis_A 16 KIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHV 50 (82)
T ss_dssp CTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCE
T ss_pred cCCCEEEEeeccCCCCCceEchhhCCCCCcCCceE
Confidence 467888889999875 46677744 6999965
No 18
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=46.65 E-value=6.8 Score=32.65 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=25.5
Q ss_pred cceeeechhhhh---hcccceeeEEECCcEEEEeeCC
Q 026515 68 HNVVRVNEIQKF---IDISCVQTYIINSAKIVFLNER 101 (237)
Q Consensus 68 hdVVRv~DIqkl---lD~S~IQtYvINsakVVFLn~R 101 (237)
++-|.+.|+..+ +-..+|+|| |||.-|||--..
T Consensus 19 ~nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~~ 54 (183)
T 2hiy_A 19 KNKVVMAELRQELTNLGLEKVESY-INSGNIFFTSID 54 (183)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEECS
T ss_pred CCcccHHHHHHHHHHcCCccceEE-EecCCEEEecCC
Confidence 345667777775 678999999 899999997443
No 19
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=38.86 E-value=12 Score=26.80 Aligned_cols=34 Identities=21% Similarity=0.589 Sum_probs=24.3
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhcC-CCC
Q 026515 22 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLIN-HKD 56 (237)
Q Consensus 22 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~~-H~~ 56 (237)
.|..-......+-...|+.|.. .+|..|+.. |..
T Consensus 32 ~C~~C~~~~~~~A~ksCl~C~~-s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 32 LCQFCDQDPAQDAVKTCVTCEV-SYCDECLKATHPN 66 (78)
T ss_dssp BCSSCCSSSCCBCCEEETTTTE-EECHHHHHHHSCC
T ss_pred cCCcCCCCCCCCCeeEccCccc-hhhhhhhHhhcCC
Confidence 3544433222567789999998 899999996 864
No 20
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=33.41 E-value=20 Score=24.27 Aligned_cols=27 Identities=26% Similarity=0.647 Sum_probs=21.6
Q ss_pred eecccCCCccCCcchhc--CCCCCceeEEE
Q 026515 36 MFCLDCMGNAFCSYCLI--NHKDHRVVQIR 63 (237)
Q Consensus 36 ~FCldC~~~~~C~~Cl~--~H~~HrvlQIR 63 (237)
+-|..|..--||..|.. .| .|+.++|.
T Consensus 20 ~~C~~C~dyDLC~~C~~~~~H-~H~m~~~~ 48 (52)
T 1tot_A 20 WHCTVCEDYDLCINCYNTKSH-THKMVKWG 48 (52)
T ss_dssp EEESSSSSCEECHHHHHHHCC-CSSEEEEC
T ss_pred EEcCCCCCchhHHHHHhCCCC-CCceEEec
Confidence 66999987679999965 56 79888874
No 21
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=26.31 E-value=31 Score=25.36 Aligned_cols=30 Identities=40% Similarity=0.731 Sum_probs=22.0
Q ss_pred eecccCCC---ccCCcchhc------CC-CCCceeEEEec
Q 026515 36 MFCLDCMG---NAFCSYCLI------NH-KDHRVVQIRRS 65 (237)
Q Consensus 36 ~FCldC~~---~~~C~~Cl~------~H-~~HrvlQIRRs 65 (237)
+-|+.|.. --||..|-. .| ..|+.+.|.++
T Consensus 37 ykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 37 WHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp EEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred EECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 45999986 569999953 45 58888887653
No 22
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=24.21 E-value=17 Score=27.72 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=21.9
Q ss_pred eecccCCCccCCcchhc--CCCCCceeEEEe
Q 026515 36 MFCLDCMGNAFCSYCLI--NHKDHRVVQIRR 64 (237)
Q Consensus 36 ~FCldC~~~~~C~~Cl~--~H~~HrvlQIRR 64 (237)
+-|+.|..--||..|.. .|..|+.++|-+
T Consensus 47 ykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 47 YKCTECIEYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp EEESSSSSCEEEHHHHHTTSGGGSCEEECCS
T ss_pred EECCCCCCccHHHHHHccCCCCCCCeeEecC
Confidence 44889987679999955 578888777654
No 23
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.20 E-value=26 Score=24.43 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=16.5
Q ss_pred CCcccccccccCC------CCeeeeecccc
Q 026515 111 TNTCEICCRSLLD------SFRFCSLGCKL 134 (237)
Q Consensus 111 ~~~Ce~C~R~L~D------~~rFCSL~CKv 134 (237)
...|.+|+. ..- ..+||||.|--
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~k 40 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCFR 40 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHHH
Confidence 346889988 321 47999999953
No 24
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.99 E-value=35 Score=24.39 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=20.9
Q ss_pred CCccccccccc---CC--CCeeeeeccccCeee
Q 026515 111 TNTCEICCRSL---LD--SFRFCSLGCKLGAMK 138 (237)
Q Consensus 111 ~~~Ce~C~R~L---~D--~~rFCSL~CKv~~~~ 138 (237)
.+.|-+|+|-= -| .-+-|||.||-..+.
T Consensus 19 ePvCvvCGryGeYICd~Td~DVCSlECK~~~l~ 51 (60)
T 2yqp_A 19 EPICVVCGRYGEYICDKTDEDVCSLECKAKHLL 51 (60)
T ss_dssp SCCCSSSSSCCSEECSSSCCEESSHHHHHHHHH
T ss_pred CceEEEecCccceeecCCCcchhhHHHHHHHHH
Confidence 45699999854 23 479999999976653
No 25
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=22.11 E-value=14 Score=30.83 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=21.1
Q ss_pred hhhcccceeeEEECCcEEEEeeCCCCC
Q 026515 78 KFIDISCVQTYIINSAKIVFLNERPQP 104 (237)
Q Consensus 78 kllD~S~IQtYvINsakVVFLn~RPq~ 104 (237)
+.||+|.||.--.-++-|||-+..|..
T Consensus 21 E~fDiSh~~G~~~VasmVVf~~g~p~K 47 (159)
T 2nrr_A 21 EGIDISHLQGKYTVASLVVFEDGFPKK 47 (159)
T ss_dssp EEEEEECC---CCEEEEEEEETTEECG
T ss_pred EEEECCccCCccceEEEEEEeCCccCh
Confidence 359999999999999999999998874
Done!