Query 026516
Match_columns 237
No_of_seqs 25 out of 27
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 15:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mud_A DNA repair protein XRCC 94.4 0.36 1.2E-05 41.2 10.4 122 38-180 33-164 (175)
2 3w03_C DNA repair protein XRCC 94.2 2.4 8.2E-05 36.2 15.3 131 22-162 32-173 (184)
3 1ik9_A DNA repair protein XRCC 93.5 1.6 5.6E-05 37.4 13.1 63 24-89 14-78 (213)
4 3q4f_C DNA repair protein XRCC 88.7 7.4 0.00025 33.6 12.1 129 24-162 43-182 (186)
5 2y3w_A SAS6, spindle assembly 52.5 75 0.0026 26.3 8.6 97 39-136 46-157 (182)
6 2z5i_A TM, general control pro 37.5 27 0.00091 24.0 3.0 39 151-193 12-50 (52)
7 2llh_A Nucleophosmin; nucleola 41.6 7.9 0.00027 29.1 0.0 34 55-88 21-59 (74)
8 1r8s_E ARNO; protein transport 34.6 11 0.00036 32.2 0.6 54 40-95 143-199 (203)
9 3ce9_A Glycerol dehydrogenase; 33.9 19 0.00066 31.3 2.2 55 72-132 73-129 (354)
10 1t10_A GPI, glucose-6-phosphat 29.2 33 0.0011 33.8 3.1 51 68-118 202-264 (605)
11 1ku1_A ARF guanine-nucleotide 28.8 16 0.00056 31.6 0.9 55 40-95 169-225 (230)
12 2y3v_A SAS6, spindle assembly 26.8 1.6E+02 0.0056 23.8 6.5 98 39-136 46-157 (159)
13 2zet_C Melanophilin; complex, 26.4 1.1E+02 0.0036 24.9 5.3 57 115-180 7-63 (153)
14 3fwb_B Nuclear mRNA export pro 26.3 47 0.0016 23.3 2.7 19 132-150 8-26 (55)
15 2o2c_A GPI, glucose-6-phosphat 25.5 34 0.0012 33.7 2.5 50 68-117 203-264 (613)
16 2wu8_A Glucose-6-phosphate iso 24.6 37 0.0013 32.9 2.6 48 68-115 149-208 (549)
17 2cxn_A Glucose-6-phosphate iso 23.8 56 0.0019 31.8 3.6 48 68-115 155-214 (557)
18 1yel_A AT1G16640; CESG, protei 23.5 37 0.0013 24.9 1.9 47 41-95 41-87 (104)
19 1v5r_A Growth-arrest-specific 22.9 16 0.00053 28.7 -0.3 20 66-85 56-75 (97)
20 3ltl_A Brefeldin A-inhibited g 21.6 30 0.001 29.7 1.1 50 40-92 151-204 (211)
21 2x4k_A 4-oxalocrotonate tautom 21.3 1.2E+02 0.0042 18.8 3.9 31 115-148 2-32 (63)
22 1vf6_C Maguk P55 subfamily mem 21.0 95 0.0032 23.1 3.6 34 141-174 18-53 (72)
No 1
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=94.37 E-value=0.36 Score=41.21 Aligned_cols=122 Identities=17% Similarity=0.283 Sum_probs=86.9
Q ss_pred CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhccc-----ccceEeecCCCCCCCcccceeeeec
Q 026516 38 SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKS-----EDVKLILEGHSNADGAAYAKIVAQK 112 (237)
Q Consensus 38 ~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS-----~~VkL~L~~~s~s~G~~~akLVAqK 112 (237)
+.+.|..||-| ++|....|-+++..+-|++|- --..|++-|+-.|-+ ++-++.|.+. .-.+-=.|
T Consensus 33 ~gf~i~ltDG~-saW~g~Vs~~~i~~eA~~~~m--e~e~Yv~el~kAl~~~~~~~~~~~f~~s~e-------~~~~syek 102 (175)
T 3mud_A 33 SGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSKE-------SCYFFFEK 102 (175)
T ss_dssp GEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHTTCCCTTCCEEEEECTT-------TCEEEEEE
T ss_pred cceEEEEeCCc-ceeeeeeCHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEecChh-------HHHHHHHH
Confidence 66899999999 579999999999999998876 467899999999933 4788888654 22222222
Q ss_pred cCCCceeEEec-----ccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 026516 113 SKGMPRISISL-----TRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180 (237)
Q Consensus 113 aKGmP~ItI~L-----~kl~~saa~D~manlsl~Lf~afrs~q~~~~~eqe~~s~L~~~L~sEKekne~iQ~q 180 (237)
. +.-+++.| ..+...| ++|-.|.- -+.| ...+=|..+.+|+..|..||+++..||..
T Consensus 103 ~--lk~vsfrLGs~~Lk~a~~pa--E~ireli~---~Aer----tV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 103 N--LKDVSFRLGSFNLEKVENPA--EVIRELIC---YCLD----TTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp E--CSSCEEEEEEEECEECSCHH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHhcccccccCCChH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34455555 7777755 44443321 1222 23344678899999999999999888876
No 2
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=94.17 E-value=2.4 Score=36.22 Aligned_cols=131 Identities=16% Similarity=0.225 Sum_probs=85.2
Q ss_pred CCCccceEEEEeC-CC-CCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccc-----eEee
Q 026516 22 SDSLGRFLFHVSA-PD-SSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDV-----KLIL 94 (237)
Q Consensus 22 s~~~~pfLFh~~a-~d-s~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~V-----kL~L 94 (237)
|-+-.|++..+.= .| .+.+.|.+||-+ ++|.+..|-+++..+-+++|- .-++|++-|+.+|-+++- ++-+
T Consensus 32 s~p~~~yflk~~W~~~l~sgF~L~LTDG~-sAW~G~vSe~~I~~~A~~~~m--~~e~Yv~eL~kAl~~~~~~~~~Y~f~~ 108 (184)
T 3w03_C 32 SEPSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNF 108 (184)
T ss_dssp TCTTSCEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEE
T ss_pred CCCCceEEEEEEeccCCCCceEEEEECCC-ceeeEEcCHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCceEEEec
Confidence 4444566666644 33 367999999999 789999999999998888654 788999999999965443 5555
Q ss_pred cCCCCCCCcccceeeeecc-CCCc--eeEEecccccchh-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026516 95 EGHSNADGAAYAKIVAQKS-KGMP--RISISLTRLTGSA-ATEAMAKLSLELFTAFRSMQTLIVQEQERCLQ 162 (237)
Q Consensus 95 ~~~s~s~G~~~akLVAqKa-KGmP--~ItI~L~kl~~sa-a~D~manlsl~Lf~afrs~q~~~~~eqe~~s~ 162 (237)
.+ ...++.-.|. +++- .=+++|.++.+.+ +.--|-+++++-+..++..-.++.+|-+|..+
T Consensus 109 s~-------e~~~fs~eK~l~di~frLGSv~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 109 SK-------ESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp CT-------TTCEEEEEEEETTEEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-------cceEEEeeeccCceEEEEeeeeeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2345544443 2322 1147788887755 23335566666666665555555555554443
No 3
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=93.54 E-value=1.6 Score=37.44 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=49.8
Q ss_pred CccceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhccccc
Q 026516 24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSED 89 (237)
Q Consensus 24 ~~~pfLFh~~a~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~ 89 (237)
+-..++.|+...+. .++.|++||-+ +.|.++.+-+++...-+. -+++..+|++-+...|..++
T Consensus 14 ~~~~~~l~~~w~~~~~~~f~l~~TdG~-~~w~g~v~~~~i~~rAk~--~~~~~eey~~~l~~aL~~~~ 78 (213)
T 1ik9_A 14 PSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADD--MAMEKGKYVGELRKALLSGA 78 (213)
T ss_dssp EEEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHH--TTCCHHHHHHHHHHHHCC--
T ss_pred CCCeEEEEEEEcCCCCCceEEEEecCC-CceEEEecHHHHHHHHHh--cCCCHHHHHHHHHHHHhCCC
Confidence 33567778877653 78999999985 789999999999854444 57899999999999998883
No 4
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=88.73 E-value=7.4 Score=33.59 Aligned_cols=129 Identities=15% Similarity=0.227 Sum_probs=90.2
Q ss_pred CccceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhc-----ccccceEeecC
Q 026516 24 SLGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASI-----KSEDVKLILEG 96 (237)
Q Consensus 24 ~~~pfLFh~~a~ds--~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~asl-----sS~~VkL~L~~ 96 (237)
+..+.+..+.--.. +.+.|..||-| ++|.+..|-+++..+-|++|- --..|++-|+-+| ..++-++.|.+
T Consensus 43 p~~~yfLqvsW~~~lgsGF~i~LTDGq-SaW~G~VS~~~Is~eAd~m~M--e~e~YV~eL~KALv~~~~~~~~y~F~~S~ 119 (186)
T 3q4f_C 43 PSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSK 119 (186)
T ss_dssp EEEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEECT
T ss_pred CCccEEEEEEeccCCCcceEEEEeCCc-ceeeeEECHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEEecc
Confidence 33445555544443 67999999999 579999999999999999876 4678999999999 56688888875
Q ss_pred CCCCCCcccceeeeecc-CCC--ceeEEecccccchhH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026516 97 HSNADGAAYAKIVAQKS-KGM--PRISISLTRLTGSAA-TEAMAKLSLELFTAFRSMQTLIVQEQERCLQ 162 (237)
Q Consensus 97 ~s~s~G~~~akLVAqKa-KGm--P~ItI~L~kl~~saa-~D~manlsl~Lf~afrs~q~~~~~eqe~~s~ 162 (237)
. +..+.=.|. ||+ .+=++.|.++..-+. ..=|-+.||.=-..++..-+++.+|-||.++
T Consensus 120 e-------~~~Fs~eK~LkdvsF~LGSv~L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 120 E-------SCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp T-------TCEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-------eeEEEEEEEecCcEEEEeeEEeeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 444443333 443 334566777776443 3444556777677777777777777777654
No 5
>2y3w_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.98A {Danio rerio}
Probab=52.50 E-value=75 Score=26.30 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=65.2
Q ss_pred CeEEEEeccccc--chhhccccchhhhhHhhhcCCCChHHHHHHHHH----hccc---ccceEeecCCCCC---CCcccc
Q 026516 39 HLLIQVTDFRSN--TWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVA----SIKS---EDVKLILEGHSNA---DGAAYA 106 (237)
Q Consensus 39 hL~v~vTDfHSn--tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~a----slsS---~~VkL~L~~~s~s---~G~~~a 106 (237)
.|+|.+||==.- -+...++-++-+.||.+=++==.|.+|...|.. |.++ ...++++.-..++ +| ..|
T Consensus 46 ~l~ieLTdd~D~fFlY~~~i~e~dF~~lK~eQ~L~VdF~~Fp~~li~lL~~c~~~~~~~~~~f~~~l~~~~~~~d~-~~~ 124 (182)
T 2y3w_A 46 DLVVRLTDDTDLYFLYNLIISEEDFQSLKVQQGLLIDFTSFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFDH-SPS 124 (182)
T ss_dssp EEEEEEEETTEEEEEEEEEEEHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHTTSSSCSEEEEEEECCCSSSC-CCE
T ss_pred EEEEEECcCCCCcEEEEEEeCHHHHHHHHHHcCeeeeHHHhHHHHHHHHHHHhccccccCceEEEEEeeccccCCC-CeE
Confidence 399999982111 145678889999999999999999999777654 4443 3455555432222 33 234
Q ss_pred ee--eeecc-CCCceeEEecccccchhHHHHHH
Q 026516 107 KI--VAQKS-KGMPRISISLTRLTGSAATEAMA 136 (237)
Q Consensus 107 kL--VAqKa-KGmP~ItI~L~kl~~saa~D~ma 136 (237)
+| |-.-. |=+..+++++....+.....-++
T Consensus 125 ~L~~vE~~~FK~l~hLsL~f~~a~d~~ik~yLa 157 (182)
T 2y3w_A 125 NLNIVETNADKHLTHLSLKLLPGSDTDIKKYLA 157 (182)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECCHHHHHHHHH
T ss_pred EEEEEEeCCCcEEEEEEEEeecCCHHHHHHHHH
Confidence 44 32222 88999999999988877666655
No 6
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=37.50 E-value=27 Score=23.99 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHhhhcC
Q 026516 151 TLIVQEQERCLQLEKEAAAEKERNENIQNQPLYSKRQKLQKMN 193 (237)
Q Consensus 151 ~~~~~eqe~~s~L~~~L~sEKekne~iQ~q~~ss~~qKlqk~n 193 (237)
.++.+=|..+..|+..|.+||+|+..|+.. ..|=|+.++
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~e----LD~tl~el~ 50 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEE----LDHALNDMT 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHh
Confidence 344556788999999999999999888766 235454443
No 7
>2llh_A Nucleophosmin; nucleolar, chaperone, oncoprotein, DNA binding protein; NMR {Homo sapiens} PDB: 2vxd_A
Probab=41.58 E-value=7.9 Score=29.07 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=25.6
Q ss_pred ccccchhh-hhHhhhcCCCChHH----HHHHHHHhcccc
Q 026516 55 KRSVLQLD-DMRDEIGIGGSWSE----FIDYVVASIKSE 88 (237)
Q Consensus 55 slSv~~Le-DlRD~VGIGGSwsd----F~dYl~aslsS~ 88 (237)
..||+++- -|+-.|.=|||.+- |.+|+.+||.=-
T Consensus 21 pssvedIKaKmqasieKg~slPKvE~KF~NyvKn~F~mt 59 (74)
T 2llh_A 21 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMT 59 (74)
Confidence 34555554 45668888999987 999999999743
No 8
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=34.57 E-value=11 Score=32.22 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=39.4
Q ss_pred eEEEEecccccchhhccccchhhhhHhhhcC--CCChH-HHHHHHHHhcccccceEeec
Q 026516 40 LLIQVTDFRSNTWEAKRSVLQLDDMRDEIGI--GGSWS-EFIDYVVASIKSEDVKLILE 95 (237)
Q Consensus 40 L~v~vTDfHSntW~~slSv~~LeDlRD~VGI--GGSws-dF~dYl~aslsS~~VkL~L~ 95 (237)
|.++=||+|+-.-...+|.++- +|.--|| |+.++ ||+.++..++++...++.-+
T Consensus 143 iImLNTDlHn~~vk~kMt~~~F--i~n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d 199 (203)
T 1r8s_E 143 VIMLNTDLHNPNVRDKMGLERF--VAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPED 199 (203)
T ss_dssp HHHHHHHHHCTTCCSCCCHHHH--HHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC
T ss_pred HHHhcccccCcccccccCHHHH--HHHhhcccCCCCCCHHHHHHHHHHHHhCCCCCccC
Confidence 3445699998776778887765 3444466 55565 99999999999999886543
No 9
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=33.86 E-value=19 Score=31.34 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHhcccccceEeecCCCCCCCc--ccceeeeeccCCCceeEEecccccchhHH
Q 026516 72 GSWSEFIDYVVASIKSEDVKLILEGHSNADGA--AYAKIVAQKSKGMPRISISLTRLTGSAAT 132 (237)
Q Consensus 72 GSwsdF~dYl~aslsS~~VkL~L~~~s~s~G~--~~akLVAqKaKGmP~ItI~L~kl~~saa~ 132 (237)
+++++ ++-+ .-++..+.-+++.= +-|. |.||.+|.. +|+|.|.||-|-.+|+.++
T Consensus 73 ~~~~~-v~~~-~~~~~~~~d~IIav---GGGsv~D~aK~vA~~-~~~p~i~IPTT~~tgse~t 129 (354)
T 3ce9_A 73 IDFDE-IGTN-AFKIPAEVDALIGI---GGGKAIDAVKYMAFL-RKLPFISVPTSTSNDGFSS 129 (354)
T ss_dssp CBHHH-HHHH-HTTSCTTCCEEEEE---ESHHHHHHHHHHHHH-HTCCEEEEESCCSSGGGTS
T ss_pred CCHHH-HHHH-HHhhhcCCCEEEEE---CChHHHHHHHHHHhh-cCCCEEEecCcccCCCCCC
Confidence 45544 4555 66766666555531 1133 799999944 7999999999999877654
No 10
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose; phosphoglucose isomerase, substrate, D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania mexicana mexicana} SCOP: c.80.1.2
Probab=29.17 E-value=33 Score=33.80 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=29.0
Q ss_pred hcCCCChHH--HHHHHHHhcccccceEeecCCCC----------CCCcccceeeeeccCCCce
Q 026516 68 IGIGGSWSE--FIDYVVASIKSEDVKLILEGHSN----------ADGAAYAKIVAQKSKGMPR 118 (237)
Q Consensus 68 VGIGGSwsd--F~dYl~aslsS~~VkL~L~~~s~----------s~G~~~akLVAqKaKGmP~ 118 (237)
||||||.-- ++.+.......+.+++.|-.+-+ -++.++.=+|+-|+.+.++
T Consensus 202 IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~i~~~l~~l~~e~TLfIViSKSGtT~E 264 (605)
T 1t10_A 202 IGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLKQVNLEETIFIIASKTFTTQE 264 (605)
T ss_dssp ECCGGGTHHHHHHHHHTGGGSCSSSEEEEECCSSTHHHHHHHTTSCGGGEEEEEECSSSCCHH
T ss_pred EeccchHHHHHHHHHHhhhhccCCCeEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCChh
Confidence 799999854 33333333334468888874211 2233555567777765543
No 11
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=28.76 E-value=16 Score=31.60 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=37.8
Q ss_pred eEEEEecccccchhhccccchhh-hhHhhhcCCCCh-HHHHHHHHHhcccccceEeec
Q 026516 40 LLIQVTDFRSNTWEAKRSVLQLD-DMRDEIGIGGSW-SEFIDYVVASIKSEDVKLILE 95 (237)
Q Consensus 40 L~v~vTDfHSntW~~slSv~~Le-DlRD~VGIGGSw-sdF~dYl~aslsS~~VkL~L~ 95 (237)
|.++=||+|+-.=...+|.++-= ++| -|..|..+ .||++.+..+++++++++-=+
T Consensus 169 iImLNTDlHnp~vk~kMT~~~FikN~r-g~n~g~d~p~e~L~~iY~~I~~~ei~~~ee 225 (230)
T 1ku1_A 169 IIMLNTDLHNPQVKEHMSFEDYSGNLK-GCCNHKDFPFWYLDRVYCSIRDKEIVMPEE 225 (230)
T ss_dssp HHHHHHHHTCTTCSSCCCHHHHHHHTT-TCBTTBCCCHHHHHHHHHHHHHSCCCCC--
T ss_pred HHHHhhhhccccccCCCCHHHHHHHhh-cccCCCCCCHHHHHHHHHHHHhCcccCCcc
Confidence 45566999987666777776543 333 23345556 589999999999999876433
No 12
>2y3v_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.92A {Danio rerio}
Probab=26.81 E-value=1.6e+02 Score=23.76 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=65.4
Q ss_pred CeEEEEeccccc--chhhccccchhhhhHhhhcCCCChHHHHHHHHH----hccc---ccceEeecCCCCC---CC-ccc
Q 026516 39 HLLIQVTDFRSN--TWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVA----SIKS---EDVKLILEGHSNA---DG-AAY 105 (237)
Q Consensus 39 hL~v~vTDfHSn--tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~a----slsS---~~VkL~L~~~s~s---~G-~~~ 105 (237)
.|+|.+||==.- -+...++-++-+.||.+=++==.|.+|...|.. |.++ ...++++.-..++ +| ...
T Consensus 46 ~l~ieLT~~~D~fFlY~~~i~e~dF~~lK~eQ~L~VdF~~Fp~~li~lL~~c~~~~~~~~~~f~~~l~~~~~~~d~~~~~ 125 (159)
T 2y3v_A 46 DLVVRLTDDTDLYFLYNLIISEEDFQSLKVQQGLLIDFTSFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFDHSPSN 125 (159)
T ss_dssp EEEEEEEETTEEEEEEEEEECHHHHHHHHHHHTCCSCGGGHHHHHHHHHHHHHHHTTSSSCSEEEEEECSSCTTSCCCEE
T ss_pred EEEEEECcCCCCcEEEEEEeCHHHHHHHHHhcceeeeHHHhHHHHHHHHHHHHcccccCCcEEEEEEeecccccCCCcEE
Confidence 399999982111 145678888999999999999999999777654 4443 3456555432221 34 222
Q ss_pred ceeeeecc-CCCceeEEecccccchhHHHHHH
Q 026516 106 AKIVAQKS-KGMPRISISLTRLTGSAATEAMA 136 (237)
Q Consensus 106 akLVAqKa-KGmP~ItI~L~kl~~saa~D~ma 136 (237)
-.+|=.-. |=+..+++++....+.+...-+|
T Consensus 126 L~~vE~~eFK~l~hLsL~f~~a~d~~ik~yLa 157 (159)
T 2y3v_A 126 LNIVETNAFKHLTHLSLKLLPGSDTDIKKYLA 157 (159)
T ss_dssp EEEEECCSSCCEEEEEEEEEECCHHHHHHHHT
T ss_pred EEEEEcCCccEEEEEEEEeecCCHHHHHHHhh
Confidence 33333333 88999999999988877665554
No 13
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.43 E-value=1.1e+02 Score=24.92 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=36.3
Q ss_pred CCceeEEecccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 026516 115 GMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180 (237)
Q Consensus 115 GmP~ItI~L~kl~~saa~D~manlsl~Lf~afrs~q~~~~~eqe~~s~L~~~L~sEKekne~iQ~q 180 (237)
+|+.. +.|..|++--. +.| + +.+...++.-..|++|+.+|...|..++.|.+++..+
T Consensus 7 ~m~~~-~dLs~LteeEr-~~I----l---~VL~Rd~~l~~~EeeRi~kLk~~l~~~~~k~~~~~~~ 63 (153)
T 2zet_C 7 GMGKR-LDLSTLTDEEA-EHV----W---AVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDT 63 (153)
T ss_dssp ----C-CCCTTSCHHHH-HHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCccC-CCcccCCHHHH-HHH----H---HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 45533 67777776443 222 2 2334566666789999999999998888788776544
No 14
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=26.26 E-value=47 Score=23.33 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.0
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 026516 132 TEAMAKLSLELFTAFRSMQ 150 (237)
Q Consensus 132 ~D~manlsl~Lf~afrs~q 150 (237)
..+|.+||-+||.||-+-+
T Consensus 8 ~~iI~sLs~eLy~AFihE~ 26 (55)
T 3fwb_B 8 KDFIDTMTRELYDAFLHER 26 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4789999999999996643
No 15
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A
Probab=25.50 E-value=34 Score=33.74 Aligned_cols=50 Identities=28% Similarity=0.267 Sum_probs=28.0
Q ss_pred hcCCCChHH--HHHHHHHhcccccceEeecCCCC----------CCCcccceeeeeccCCCc
Q 026516 68 IGIGGSWSE--FIDYVVASIKSEDVKLILEGHSN----------ADGAAYAKIVAQKSKGMP 117 (237)
Q Consensus 68 VGIGGSwsd--F~dYl~aslsS~~VkL~L~~~s~----------s~G~~~akLVAqKaKGmP 117 (237)
||||||.-- .+.+.......+.+++.|-.+-+ -++.++.=+|+-|+.+.+
T Consensus 203 IGIGGS~LGp~~v~eaL~~~~~~~~~v~fvsNvDp~~i~~~l~~l~~e~TLfIViSKSGTT~ 264 (613)
T 2o2c_A 203 IGIGGSDLGPVMATEALKPFSQRDLSLHFVSNVDGTHIAEVLKSIDIEATLFIVASKTFTTQ 264 (613)
T ss_dssp ECCGGGTHHHHHHHHHTGGGSCTTSEEEEECCSSHHHHHHHHHHCCGGGEEEEEECSSSCCH
T ss_pred EeccchHHHHHHHHHHhhhhccCCceEEEEccCCHHHHHHHHhcCCCCCEEEEEEeCCCCCh
Confidence 799999854 33333333334468888874211 223455556777765443
No 16
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis, 5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis; 2.25A {Mycobacterium tuberculosis}
Probab=24.56 E-value=37 Score=32.91 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=26.8
Q ss_pred hcCCCChHH--HHHHHHHhcccccceEeecCCCC----------CCCcccceeeeeccCC
Q 026516 68 IGIGGSWSE--FIDYVVASIKSEDVKLILEGHSN----------ADGAAYAKIVAQKSKG 115 (237)
Q Consensus 68 VGIGGSwsd--F~dYl~aslsS~~VkL~L~~~s~----------s~G~~~akLVAqKaKG 115 (237)
||||||.-. .+.+.........+++.|-.+-+ -++.++.=+|+-|+.+
T Consensus 149 IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~~~~~l~~l~~e~TLvIViSKSGt 208 (549)
T 2wu8_A 149 IGIGGSDLGPVMVYQALRHYADAGISARFVSNVDPADLIATLADLDPATTLFIVASKTFS 208 (549)
T ss_dssp ECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSSHHHHHHHHTTCCGGGEEEEEECSSSC
T ss_pred EeccchHHHHHHHHHHHHhhccCCCeEEEEccCCHHHHHHHHhcCCCCcEEEEEEeCCCC
Confidence 799999865 33333333333457887774211 2234555667777653
No 17
>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A 2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A 1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A 1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
Probab=23.85 E-value=56 Score=31.76 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=25.8
Q ss_pred hcCCCChHH--HHHHHHHhcccccceEeecCCCC----------CCCcccceeeeeccCC
Q 026516 68 IGIGGSWSE--FIDYVVASIKSEDVKLILEGHSN----------ADGAAYAKIVAQKSKG 115 (237)
Q Consensus 68 VGIGGSwsd--F~dYl~aslsS~~VkL~L~~~s~----------s~G~~~akLVAqKaKG 115 (237)
||||||.-. .+.+.........+++.|-.+-+ -++.++.=+|+-|+.+
T Consensus 155 IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~i~~~l~~L~~e~TLvIViSKSGt 214 (557)
T 2cxn_A 155 IGIGGSDLGPLMVTEALKPYSKGGPRVWFVSNIDGTHIAKTLASLSPETSLFIIASKTFT 214 (557)
T ss_dssp ECCGGGTHHHHHHHHHTGGGGTTSCEEEEECCSSHHHHHHHHTTCCTTTEEEEEECSSSC
T ss_pred EeccchHHHHHHHHHHHhhhccCCCeEEEEecCCHHHHHHHHhcCCCCcEEEEEEcCCCC
Confidence 799999865 23332222222357777773211 2244555566666643
No 18
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=23.47 E-value=37 Score=24.86 Aligned_cols=47 Identities=11% Similarity=0.385 Sum_probs=35.3
Q ss_pred EEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeec
Q 026516 41 LIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILE 95 (237)
Q Consensus 41 ~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~VkL~L~ 95 (237)
.|.+.|-.-.+|+-.++.. .+.+.+.++|.+|+. ...|+-||+ |+|+
T Consensus 41 ~v~L~~~~G~~W~v~~~~~-----~~~~~l~~GW~~Fv~--~~~L~~GD~-lvF~ 87 (104)
T 1yel_A 41 TVDLLDYSGRSWTVRMKKR-----GEKVFLTVGWENFVK--DNNLEDGKY-LQFI 87 (104)
T ss_dssp EEEEEETTSCEEEEEEEEE-----TTEEEECTTHHHHHH--HHTCCTTCE-EEEE
T ss_pred EEEEECCCCCEEEEEEEEE-----CCcEEEccChHHHHH--HcCCCCCCE-EEEE
Confidence 5667777889999888754 357899999999985 357888884 3444
No 19
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=22.89 E-value=16 Score=28.66 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=16.7
Q ss_pred hhhcCCCChHHHHHHHHHhc
Q 026516 66 DEIGIGGSWSEFIDYVVASI 85 (237)
Q Consensus 66 D~VGIGGSwsdF~dYl~asl 85 (237)
=.|-+||+|.++-+||..--
T Consensus 56 vMVRVGGGW~~L~~yL~khd 75 (97)
T 1v5r_A 56 VMVRVGGGWETFAGYLLKHD 75 (97)
T ss_dssp EEEEETTEEEEHHHHHHHHC
T ss_pred EEEEeCCcHHHHHHHHHHcC
Confidence 36889999999999998643
No 20
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=21.65 E-value=30 Score=29.70 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=36.5
Q ss_pred eEEEEecccccchhhccccchh-hhhHhhhcC--CCCh-HHHHHHHHHhcccccceE
Q 026516 40 LLIQVTDFRSNTWEAKRSVLQL-DDMRDEIGI--GGSW-SEFIDYVVASIKSEDVKL 92 (237)
Q Consensus 40 L~v~vTDfHSntW~~slSv~~L-eDlRD~VGI--GGSw-sdF~dYl~aslsS~~VkL 92 (237)
|.++=||+|+-.=...+|.++- .++| || |+.+ .||+.++.++++++++++
T Consensus 151 iImLNTDlHn~~vk~kMt~~~Fi~n~r---g~n~g~d~p~e~L~~iYd~I~~~ei~l 204 (211)
T 3ltl_A 151 IIMLTTDLHSPQVKNKMTKEQYIKMNR---GINDSKDLPEEYLSAIYNEIAGKKISM 204 (211)
T ss_dssp HHHHHHHHTCTTCCSCCCHHHHHHHTC---SSCSSSSCCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHhhhhcCccccCCCCHHHHHHHhh---cccCCCCCCHHHHHHHHHHHHhCCccC
Confidence 3456699998777777777653 3344 55 4444 689999999999999876
No 21
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=21.31 E-value=1.2e+02 Score=18.82 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=21.2
Q ss_pred CCceeEEecccccchhHHHHHHHhhHHHHHHHHH
Q 026516 115 GMPRISISLTRLTGSAATEAMAKLSLELFTAFRS 148 (237)
Q Consensus 115 GmP~ItI~L~kl~~saa~D~manlsl~Lf~afrs 148 (237)
.||.|+|.+.. +. ..+....|+-++++++..
T Consensus 2 ~MP~i~i~~~~--g~-s~e~k~~l~~~l~~~l~~ 32 (63)
T 2x4k_A 2 MMPIVNVKLLE--GR-SDEQLKNLVSEVTDAVEK 32 (63)
T ss_dssp CCCEEEEEEES--CC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcC--CC-CHHHHHHHHHHHHHHHHH
Confidence 39999998764 33 345567777777777743
No 22
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=20.96 E-value=95 Score=23.13 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh
Q 026516 141 ELFTAFRSMQTLI--VQEQERCLQLEKEAAAEKERN 174 (237)
Q Consensus 141 ~Lf~afrs~q~~~--~~eqe~~s~L~~~L~sEKekn 174 (237)
+||.+++.+|--+ +++||-+.-|++-+..+-=++
T Consensus 18 el~sSLK~iq~~L~DsQSQeDi~lllqL~~~~DFQ~ 53 (72)
T 1vf6_C 18 DLFSSLKHIQHTLVDSQSQEDISLLLQLVQNRDFQN 53 (72)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH
Confidence 6899999999888 999999999988776554333
Done!