Query 026516
Match_columns 237
No_of_seqs 25 out of 27
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 15:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026516.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026516hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yela1 b.142.1.2 (A:1-102) At 31.9 9.4 0.00068 26.7 1.7 48 41-96 39-86 (102)
2 d1v8ha1 b.1.18.19 (A:2-107) Su 23.5 21 0.0015 25.6 2.4 41 16-58 63-104 (106)
3 d1i6la_ c.26.1.1 (A:) Tryptoph 23.4 33 0.0024 27.7 3.9 52 35-96 30-81 (326)
4 d1wida_ b.142.1.2 (A:) DNA-bin 23.2 14 0.001 25.7 1.4 51 39-94 44-94 (117)
5 d1ik9a1 b.59.1.1 (A:1-117) XRC 22.5 66 0.0048 23.9 5.2 66 28-96 19-90 (117)
6 d1xsza1 a.118.3.1 (A:1-197) Ra 18.3 18 0.0013 28.5 1.0 55 40-94 139-196 (197)
7 d2guya1 b.71.1.1 (A:382-476) F 16.7 42 0.0031 23.9 2.8 25 106-130 68-92 (95)
8 d2aaaa1 b.71.1.1 (A:382-476) F 15.4 35 0.0026 24.2 2.0 25 106-130 68-92 (95)
9 d1kpia_ c.66.1.18 (A:) CmaA2 { 15.0 66 0.0048 25.8 3.9 54 39-92 112-169 (291)
10 d1vlra1 d.13.1.3 (A:146-337) m 14.6 37 0.0027 26.9 2.1 45 26-72 117-163 (192)
No 1
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=31.86 E-value=9.4 Score=26.66 Aligned_cols=48 Identities=10% Similarity=0.350 Sum_probs=35.1
Q ss_pred EEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeecC
Q 026516 41 LIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEG 96 (237)
Q Consensus 41 ~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~VkL~L~~ 96 (237)
.|.+.|-+...|.-.++.. .+.+.++++|.+|+.. .+|+-||+ ++|+-
T Consensus 39 ~i~L~d~~G~~W~v~~~~~-----~~~~~~~~GW~~Fv~~--n~L~~GD~-~vF~~ 86 (102)
T d1yela1 39 TVDLLDYSGRSWTVRMKKR-----GEKVFLTVGWENFVKD--NNLEDGKY-LQFIY 86 (102)
T ss_dssp EEEEEETTSCEEEEEEEEE-----TTEEEECTTHHHHHHH--HTCCTTCE-EEEEE
T ss_pred EEEEEcCCCCEEEEEEEEe-----CCeEEEccCHHHHHHH--cCCCcCCE-EEEEE
Confidence 4566688899998776543 4567889999999864 67888884 44543
No 2
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=23.51 E-value=21 Score=25.60 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=31.1
Q ss_pred cccCCCCCCccceE-EEEeCCCCCCeEEEEecccccchhhcccc
Q 026516 16 EWADSRSDSLGRFL-FHVSAPDSSHLLIQVTDFRSNTWEAKRSV 58 (237)
Q Consensus 16 e~~~~~s~~~~pfL-Fh~~a~ds~hL~v~vTDfHSntW~~slSv 58 (237)
+|.+ +.+--|+| |++.+...+.|+|..+|-+-++|+++..+
T Consensus 63 ~~~~--svS~NP~~~F~~~~~~~g~l~v~~~Dn~G~~~~~~~~I 104 (106)
T d1v8ha1 63 RPGP--STSANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKL 104 (106)
T ss_dssp CCCS--SCCSSCEEEEEEECCSCEEEEEEEEETTSCEEEEEEEE
T ss_pred EcCC--cccCCCeEEEEEccCCCceEEEEEEECCCCEEEEEEEE
Confidence 4444 33445544 78888888899999999999999988765
No 3
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=23.39 E-value=33 Score=27.69 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=38.1
Q ss_pred CCCCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeecC
Q 026516 35 PDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEG 96 (237)
Q Consensus 35 ~ds~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~VkL~L~~ 96 (237)
.+...+.|.++|+|+.|.. .+.++||+-+ ..-..+|+..+|--+++.+.+.-
T Consensus 30 q~~~~~~i~iAD~halt~~-----~~~~~l~~~~-----~~~~~~~lA~G~dp~k~~i~~qS 81 (326)
T d1i6la_ 30 QHEYNCYFCIVDQHAITVW-----QDPHELRQNI-----RRLAALYLAVGIDPTQATLFIQS 81 (326)
T ss_dssp TTTSEEEEEECHHHHTTSC-----CCHHHHHHHH-----HHHHHHHHHTTCCTTTSEEEEGG
T ss_pred hCCCCEEEEeehHHhhccC-----CCHHHHHHHH-----HHHHHHhhhhhccccceEEEeec
Confidence 3455689999999986543 3456776644 44558899999999999988863
No 4
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.24 E-value=14 Score=25.71 Aligned_cols=51 Identities=18% Similarity=0.388 Sum_probs=37.6
Q ss_pred CeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEee
Q 026516 39 HLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLIL 94 (237)
Q Consensus 39 hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~aslsS~~VkL~L 94 (237)
..-|++-|.|...|+-.+++-.-. ..-.++++|.+|+.- ..|+-||+=+..
T Consensus 44 ~~~~~~~d~~g~~W~~~~~~~~~~---~~~~l~~GW~~Fv~~--~~Lk~GD~~~F~ 94 (117)
T d1wida_ 44 GVLLNFEDVNGKVWRFRYSYWNSS---QSYVLTKGWSRFVKE--KNLRAGDVVSFS 94 (117)
T ss_dssp CEEEEEEETTTEEEEEEEEEETTT---TEEEEESSHHHHHHH--TTCCTTCEEEEE
T ss_pred cEEEEEEeCCCCEEEEEEEEECCC---CceEEecCHHHHHHH--cCCCCCCEEEEE
Confidence 467999999999999888774222 122466679999875 459999987654
No 5
>d1ik9a1 b.59.1.1 (A:1-117) XRCC4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.49 E-value=66 Score=23.91 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=50.6
Q ss_pred eEEEEeCCC-CCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhc-----ccccceEeecC
Q 026516 28 FLFHVSAPD-SSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASI-----KSEDVKLILEG 96 (237)
Q Consensus 28 fLFh~~a~d-s~hL~v~vTDfHSntW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~asl-----sS~~VkL~L~~ 96 (237)
||+----.| .+...|..||.| ++|....|-+++--+-|+++- --..|++-++..| ..++-++.|..
T Consensus 19 FL~vsw~~dlgsGf~l~LtDG~-saW~G~Vse~dis~eA~~m~M--e~e~Yv~el~kAl~~~~~~~~~y~F~~s~ 90 (117)
T d1ik9a1 19 FLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSK 90 (117)
T ss_dssp EEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHCC----CCCEEEEEET
T ss_pred EEEEEeeecCCCceEEEEeCCc-eeeeeEECHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEEecc
Confidence 454444444 345889999999 679999999999999998765 4678999999888 45677777764
No 6
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=18.34 E-value=18 Score=28.48 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=37.0
Q ss_pred eEEEEecccccch--hhccccchh-hhhHhhhcCCCChHHHHHHHHHhcccccceEee
Q 026516 40 LLIQVTDFRSNTW--EAKRSVLQL-DDMRDEIGIGGSWSEFIDYVVASIKSEDVKLIL 94 (237)
Q Consensus 40 L~v~vTDfHSntW--~~slSv~~L-eDlRD~VGIGGSwsdF~dYl~aslsS~~VkL~L 94 (237)
+.++-||+|+-.= ...++.++- .++|..-+=..==.||++++.+++++...+|-|
T Consensus 139 iimLnTDlHnp~v~~k~kMt~~~Fi~n~r~~~~~~~~~~e~L~~iY~~I~~~~~~l~~ 196 (197)
T d1xsza1 139 TIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKPFELNF 196 (197)
T ss_dssp HHHHHHHHHCTTSCGGGSCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCB
T ss_pred HHHHhccccCccccccCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCCCeeeec
Confidence 4455699997643 456777654 555543321223468999999999999988754
No 7
>d2guya1 b.71.1.1 (A:382-476) Fungal alpha-amylase {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}
Probab=16.70 E-value=42 Score=23.85 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=20.0
Q ss_pred ceeeeeccCCCceeEEecccccchh
Q 026516 106 AKIVAQKSKGMPRISISLTRLTGSA 130 (237)
Q Consensus 106 akLVAqKaKGmP~ItI~L~kl~~sa 130 (237)
+-|-..-.+|+|||=+|-.++.++.
T Consensus 68 G~l~v~m~~G~PrV~~P~s~l~gSG 92 (95)
T d2guya1 68 GNVPVPMAGGLPRVLYPTEKLAGSK 92 (95)
T ss_dssp SCEEEEECTTCCEEEEEGGGGTTSS
T ss_pred CEEEEEecCCeeEEEEeHHHCcCCc
Confidence 3456667799999999999998863
No 8
>d2aaaa1 b.71.1.1 (A:382-476) Fungal alpha-amylase {Aspergillus niger, acid amylase [TaxId: 5061]}
Probab=15.40 E-value=35 Score=24.24 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=19.9
Q ss_pred ceeeeeccCCCceeEEecccccchh
Q 026516 106 AKIVAQKSKGMPRISISLTRLTGSA 130 (237)
Q Consensus 106 akLVAqKaKGmP~ItI~L~kl~~sa 130 (237)
+-|-....+|+|||=+|-..+.++.
T Consensus 68 G~l~V~m~~G~PrV~~P~s~l~gSG 92 (95)
T d2aaaa1 68 GDIPVPMASGLPRVLLPASVVDSSS 92 (95)
T ss_dssp SCEEEEECTTCCEEEEEHHHHTTSS
T ss_pred CEEEEEecCCEeEEEEeHHHccCCC
Confidence 4466667799999999999887753
No 9
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.97 E-value=66 Score=25.77 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=41.4
Q ss_pred CeEEEEec--ccccchhhccccchhhhhHhhhcCCCC--hHHHHHHHHHhcccccceE
Q 026516 39 HLLIQVTD--FRSNTWEAKRSVLQLDDMRDEIGIGGS--WSEFIDYVVASIKSEDVKL 92 (237)
Q Consensus 39 hL~v~vTD--fHSntW~~slSv~~LeDlRD~VGIGGS--wsdF~dYl~aslsS~~VkL 92 (237)
.+.+...| +..+.+++..|++.+|=|.|..+--|- |..|+.-+...|+-|-+=+
T Consensus 112 ~v~~~~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~ 169 (291)
T d1kpia_ 112 RKEVRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRML 169 (291)
T ss_dssp CEEEEECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEE
T ss_pred hhhhhhhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceE
Confidence 35555566 445789999999999999886554443 8999999999999876543
No 10
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.62 E-value=37 Score=26.87 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=26.4
Q ss_pred cceEEEEeCCCCCCeEEEEe--cccccchhhccccchhhhhHhhhcCCC
Q 026516 26 GRFLFHVSAPDSSHLLIQVT--DFRSNTWEAKRSVLQLDDMRDEIGIGG 72 (237)
Q Consensus 26 ~pfLFh~~a~ds~hL~v~vT--DfHSntW~~slSv~~LeDlRD~VGIGG 72 (237)
-++.||. +|+..|||+||. ||=+.. ...-----|+|+=+-+-+|+
T Consensus 117 ~Rig~H~-~PSv~HLHlHvi~~~~~~~g-~~~~ra~lL~dvI~nLe~~~ 163 (192)
T d1vlra1 117 LRVYLHY-LPSYYHLHVHFTALGFEAPG-SGVERAHLLAQVIENLECDP 163 (192)
T ss_dssp EEEEEES-SCSSSSCEEEEEETTSCCTT-CBTTTEEEHHHHHHHHHHCT
T ss_pred eEEEEEC-CCCEeeeEEEEEeccCCCCc-cccceeeeHHHHHHHHhcCc
Confidence 3577886 568999999997 443321 11111224666666665553
Done!