BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026517
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 81.6 bits (200), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/52 (67%), Positives = 40/52 (76%), Gaps = 4/52 (7%)
Query: 101 DDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152
DDG +ECAVCL+ LE+ E AR LP C H FHAEC+D WLGSHSTCP+CR
Sbjct: 3 DDG----VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 65.5 bits (158), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 110 CAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157
C VC+ + E+ ++ RVLP CNH FHA+C+DKWL ++ TCPICR + P
Sbjct: 26 CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 55.5 bits (132), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRPQPES 163
+C +CLS LE E R LP C H FH C+D+WL ++ CPICR E + ES
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES 69
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 99 GQDDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152
G ++ + + +EC VC + E R LP CNH FH CI WL H +CP+CR
Sbjct: 7 GTEEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 44.3 bits (103), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 110 CAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRPQPESREGPVS 169
CAVCL + + + + P C H FH +C+ KWL CP+C P Q GP S
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNM---PVLQLAQLSGPSS 73
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 73 PPPPKTGLDPTVIAALPIFVYKQTDGGQDDGLAAAIECAVCLSNLENEEMARVLPNCNHT 132
PP K +D ALP + + G + C +C S ++A LP C+H
Sbjct: 15 PPASKESID-----ALPEILVTEDHGAVGQEMC----CPICCSEYVKGDVATELP-CHHY 64
Query: 133 FHAECIDKWLGSHSTCPICRTGAEP 157
FH C+ WL TCP+CR P
Sbjct: 65 FHKPCVSIWLQKSGTCPVCRCMFPP 89
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR---TGAEPRPQPES 163
EC +C+ + +LP C H+F +CIDKW H CPICR TGA P S
Sbjct: 17 ECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPSS 69
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 101 DDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158
+D L ++C +C + V NC H+F + CI++W+ CPICR + +
Sbjct: 47 NDVLENELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 101 DDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158
+D L ++C +C + V NC H+F + CI++W+ CPICR + +
Sbjct: 47 NDVLENELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 101 DDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158
+D L ++C +C + V NC H+F + CI++W+ CPICR + +
Sbjct: 58 NDVLENELQCIICSEYF----IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 111
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 99 GQDDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHST---CPIC 151
G D L +EC +C+ + E++ L +C HT +C++K L S CP C
Sbjct: 7 GNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPI 150
IEC ++ +EE CNH FH CI +WL + CP+
Sbjct: 52 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPI 150
IEC ++ +EE CNH FH CI +WL + CP+
Sbjct: 54 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPI 150
IEC ++ +EE CNH FH CI +WL + CP+
Sbjct: 52 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPI 150
IEC ++ +EE CNH FH CI +WL + CP+
Sbjct: 63 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPI 150
IEC ++ +EE CNH FH CI +WL + CP+
Sbjct: 44 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 86
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156
A C +CL + N MA LP C H F CI +W+ + TCP+C+ E
Sbjct: 4 VAERCPICLEDPSNYSMA--LP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPI 150
IEC ++ +EE CNH FH CI +WL + CP+
Sbjct: 45 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 88
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPI 150
IEC ++ +EE CNH FH CI +WL + CP+
Sbjct: 35 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCP-ICRTGAEP 157
+ C +C E +A ++P C+H + + CI K+L + CP C T EP
Sbjct: 23 LRCGICF---EYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 110 CAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152
C C + + E+ V CNH+FH C+ W+ ++ CP+C+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.3 bits (72), Expect = 0.23, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 105 AAAIECAVCL---SNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152
A + C +C+ S + V C H F ++C+ L + +TCP CR
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 31.6 bits (70), Expect = 0.37, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 99 GQDDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKW---LGSHSTCPIC 151
G + L C+VCL L+ V+ C H F CI +W L CP+C
Sbjct: 7 GALENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 97 DGGQDDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH-STCPICRTGA 155
D + +A C +C L + AR+ P+C+ CI +WL + CP CR
Sbjct: 12 DEQSVESIAEVFRCFICXEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68
Query: 156 EPR 158
+ R
Sbjct: 69 QLR 71
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 103 GLAAAIECAVCLSNLENEEM-ARVLPNCNHTFHAECIDKWLGSHSTCPIC 151
G + + C +CL ++ + A VLP C H H C ++ L CP+C
Sbjct: 1 GSSGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 105 AAAIECAVCL---SNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152
+ + C +C+ S + V C H F ++C+ L + +TCP CR
Sbjct: 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 110 CAVCLSNLENEEM-ARVLPNCNHTFHAECIDKWLGSHSTCPIC 151
C +CL ++ + A VLP C H H C ++ L CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 123 ARVLPNCNHTFHAECIDKWLGSHSTCPIC 151
A + C H+F CI ++L + CPIC
Sbjct: 28 ATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 123 ARVLPNCNHTFHAECIDKWLGSHSTCPIC 151
A + C H+F CI ++L + CPIC
Sbjct: 28 ATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 123 ARVLPNCNHTFHAECIDKWLGSHSTCPIC 151
A + C H+F CI ++L + CPIC
Sbjct: 24 ATTIIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 105 AAAIECAVCL---SNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152
+ + C +C+ S + V C H F ++C+ L + +TCP CR
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 105 AAAIECAVCL---SNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152
+ + C +C+ S + V C H F ++C+ L + +TCP CR
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 105 AAAIECAVCL---SNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152
+ + C +C+ S + V C H F ++C+ L + +TCP CR
Sbjct: 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,575,519
Number of Sequences: 62578
Number of extensions: 178560
Number of successful extensions: 470
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 45
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)