Query 026517
Match_columns 237
No_of_seqs 259 out of 2101
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:03:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 8.1E-19 1.8E-23 153.9 12.7 75 79-159 206-281 (348)
2 COG5243 HRD1 HRD ubiquitin lig 99.6 2.3E-14 5E-19 125.0 12.2 66 82-155 269-344 (491)
3 PF13639 zf-RING_2: Ring finge 99.5 1.2E-15 2.6E-20 96.1 0.9 43 109-152 2-44 (44)
4 PHA02929 N1R/p28-like protein; 99.4 2.2E-13 4.7E-18 115.0 4.6 76 78-156 148-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 9.8E-13 2.1E-17 91.8 3.0 43 109-152 21-73 (73)
6 COG5540 RING-finger-containing 99.3 1.8E-12 3.8E-17 110.7 2.9 50 107-157 323-373 (374)
7 PLN03208 E3 ubiquitin-protein 99.1 7.1E-11 1.5E-15 96.1 5.9 49 107-159 18-82 (193)
8 PF13920 zf-C3HC4_3: Zinc fing 99.0 8.9E-11 1.9E-15 75.8 2.0 46 107-156 2-48 (50)
9 PF13923 zf-C3HC4_2: Zinc fing 99.0 9.9E-11 2.1E-15 71.6 1.7 39 110-151 1-39 (39)
10 KOG0317 Predicted E3 ubiquitin 99.0 1.8E-10 3.9E-15 98.1 3.7 49 106-158 238-286 (293)
11 cd00162 RING RING-finger (Real 99.0 2.5E-10 5.4E-15 71.0 3.2 44 109-155 1-45 (45)
12 KOG0320 Predicted E3 ubiquitin 99.0 2.6E-10 5.7E-15 90.7 2.9 51 106-158 130-180 (187)
13 KOG0802 E3 ubiquitin ligase [P 99.0 1E-09 2.2E-14 103.9 6.3 51 107-158 291-343 (543)
14 PF12861 zf-Apc11: Anaphase-pr 98.9 4.6E-10 1E-14 79.4 2.9 51 107-157 21-83 (85)
15 PF15227 zf-C3HC4_4: zinc fing 98.9 3.9E-10 8.5E-15 70.1 1.9 38 110-151 1-42 (42)
16 PHA02926 zinc finger-like prot 98.9 5E-10 1.1E-14 92.3 3.0 51 107-157 170-231 (242)
17 KOG0824 Predicted E3 ubiquitin 98.9 9.1E-10 2E-14 94.3 2.8 53 107-163 7-60 (324)
18 KOG0823 Predicted E3 ubiquitin 98.9 1.3E-09 2.7E-14 90.4 3.2 50 105-158 45-97 (230)
19 smart00504 Ubox Modified RING 98.9 1.8E-09 4E-14 72.7 3.5 46 108-157 2-47 (63)
20 PF14634 zf-RING_5: zinc-RING 98.8 2.6E-09 5.7E-14 67.0 3.1 44 109-153 1-44 (44)
21 PF00097 zf-C3HC4: Zinc finger 98.8 1.7E-09 3.7E-14 66.7 1.7 39 110-151 1-41 (41)
22 TIGR00599 rad18 DNA repair pro 98.8 5.3E-09 1.2E-13 94.4 3.8 48 107-158 26-73 (397)
23 smart00184 RING Ring finger. E 98.7 6.7E-09 1.5E-13 62.2 2.6 38 110-151 1-39 (39)
24 KOG0828 Predicted E3 ubiquitin 98.6 4.5E-08 9.7E-13 88.8 5.4 51 106-157 570-635 (636)
25 COG5194 APC11 Component of SCF 98.5 6.7E-08 1.5E-12 66.9 2.4 30 128-157 53-82 (88)
26 KOG0287 Postreplication repair 98.5 3.5E-08 7.5E-13 85.8 0.8 49 107-159 23-71 (442)
27 COG5574 PEX10 RING-finger-cont 98.5 6.4E-08 1.4E-12 81.7 2.1 48 107-158 215-264 (271)
28 KOG1734 Predicted RING-contain 98.5 3.4E-08 7.4E-13 83.4 0.4 51 107-158 224-283 (328)
29 PF13445 zf-RING_UBOX: RING-ty 98.5 5.9E-08 1.3E-12 60.4 1.3 38 110-149 1-43 (43)
30 COG5432 RAD18 RING-finger-cont 98.5 6.5E-08 1.4E-12 82.6 1.8 47 107-157 25-71 (391)
31 KOG1493 Anaphase-promoting com 98.4 8E-08 1.7E-12 65.9 0.7 49 108-156 21-81 (84)
32 KOG2164 Predicted E3 ubiquitin 98.4 1.7E-07 3.6E-12 85.8 2.6 49 107-159 186-239 (513)
33 PF04564 U-box: U-box domain; 98.4 1.5E-07 3.2E-12 65.6 1.7 48 107-158 4-52 (73)
34 smart00744 RINGv The RING-vari 98.3 5.3E-07 1.2E-11 57.8 2.3 42 109-152 1-49 (49)
35 TIGR00570 cdk7 CDK-activating 98.2 9.8E-07 2.1E-11 77.0 4.1 52 107-159 3-57 (309)
36 PF11793 FANCL_C: FANCL C-term 98.2 2.4E-07 5.1E-12 64.0 -0.5 50 108-157 3-67 (70)
37 COG5219 Uncharacterized conser 98.2 5.2E-07 1.1E-11 87.4 1.0 54 103-156 1465-1523(1525)
38 KOG2177 Predicted E3 ubiquitin 98.2 7.2E-07 1.6E-11 76.7 1.8 42 107-152 13-54 (386)
39 KOG4265 Predicted E3 ubiquitin 98.2 9.4E-07 2E-11 77.8 2.5 50 105-158 288-338 (349)
40 KOG0804 Cytoplasmic Zn-finger 98.1 1.2E-06 2.6E-11 78.9 2.8 54 100-156 168-222 (493)
41 KOG4172 Predicted E3 ubiquitin 98.1 6.7E-07 1.5E-11 57.5 0.4 46 107-156 7-54 (62)
42 PF14835 zf-RING_6: zf-RING of 98.1 9.5E-07 2.1E-11 59.1 0.8 48 107-159 7-54 (65)
43 KOG2930 SCF ubiquitin ligase, 98.1 1.4E-06 3.1E-11 63.3 1.5 49 107-155 46-107 (114)
44 KOG0827 Predicted E3 ubiquitin 97.9 3.4E-06 7.3E-11 74.8 1.7 45 108-152 5-52 (465)
45 KOG0311 Predicted E3 ubiquitin 97.9 1.3E-06 2.9E-11 76.6 -1.4 50 107-159 43-93 (381)
46 KOG1785 Tyrosine kinase negati 97.7 1.5E-05 3.1E-10 71.1 1.4 46 108-157 370-417 (563)
47 KOG0825 PHD Zn-finger protein 97.7 8.6E-06 1.9E-10 77.8 -0.4 51 107-158 123-173 (1134)
48 KOG0978 E3 ubiquitin ligase in 97.6 1.4E-05 3.1E-10 76.5 0.6 48 107-158 643-691 (698)
49 KOG1039 Predicted E3 ubiquitin 97.6 2.5E-05 5.4E-10 69.5 2.1 51 107-157 161-222 (344)
50 KOG1645 RING-finger-containing 97.6 3.6E-05 7.8E-10 68.9 2.8 49 107-155 4-55 (463)
51 KOG4445 Uncharacterized conser 97.6 1.2E-05 2.7E-10 69.1 -0.5 49 108-157 116-187 (368)
52 KOG4159 Predicted E3 ubiquitin 97.5 5.8E-05 1.3E-09 68.5 2.3 49 105-157 82-130 (398)
53 KOG0824 Predicted E3 ubiquitin 97.3 0.0002 4.3E-09 61.9 3.3 48 107-157 105-152 (324)
54 KOG2879 Predicted E3 ubiquitin 97.3 0.0002 4.3E-09 61.1 3.2 49 105-156 237-287 (298)
55 PF11789 zf-Nse: Zinc-finger o 97.3 0.00013 2.8E-09 48.2 1.4 41 107-150 11-53 (57)
56 KOG0826 Predicted E3 ubiquitin 97.2 0.00053 1.1E-08 60.0 5.2 46 107-155 300-345 (357)
57 KOG1428 Inhibitor of type V ad 97.2 0.00022 4.7E-09 72.4 2.6 66 87-157 3470-3545(3738)
58 KOG0297 TNF receptor-associate 97.2 0.00021 4.6E-09 65.2 2.3 49 107-158 21-69 (391)
59 KOG2660 Locus-specific chromos 96.9 0.00016 3.5E-09 63.2 -0.8 46 107-155 15-60 (331)
60 KOG1002 Nucleotide excision re 96.9 0.00052 1.1E-08 63.5 2.0 54 101-158 530-588 (791)
61 KOG0801 Predicted E3 ubiquitin 96.8 0.00034 7.3E-09 55.2 0.3 28 107-135 177-204 (205)
62 KOG1941 Acetylcholine receptor 96.8 0.00035 7.7E-09 62.3 0.2 46 107-153 365-413 (518)
63 COG5152 Uncharacterized conser 96.7 0.0008 1.7E-08 54.9 1.7 46 107-156 196-241 (259)
64 KOG1571 Predicted E3 ubiquitin 96.7 0.00041 9E-09 61.4 -0.1 44 105-156 303-347 (355)
65 KOG4275 Predicted E3 ubiquitin 96.7 0.00031 6.7E-09 60.5 -1.0 41 107-155 300-341 (350)
66 PF05883 Baculo_RING: Baculovi 96.6 0.00062 1.3E-08 52.4 0.7 43 107-150 26-74 (134)
67 PF14570 zf-RING_4: RING/Ubox 96.6 0.002 4.4E-08 40.8 2.8 45 110-155 1-47 (48)
68 KOG4692 Predicted E3 ubiquitin 96.6 0.0025 5.3E-08 56.4 4.1 49 105-157 420-468 (489)
69 KOG3970 Predicted E3 ubiquitin 96.5 0.0019 4.2E-08 53.7 2.9 50 107-158 50-107 (299)
70 PF10367 Vps39_2: Vacuolar sor 96.5 0.00088 1.9E-08 49.5 0.5 31 107-139 78-108 (109)
71 KOG1813 Predicted E3 ubiquitin 96.3 0.0015 3.2E-08 56.4 1.1 47 107-157 241-287 (313)
72 KOG3039 Uncharacterized conser 96.3 0.0043 9.4E-08 52.3 3.5 56 107-162 221-276 (303)
73 COG5222 Uncharacterized conser 96.2 0.0024 5.3E-08 55.2 1.7 43 108-153 275-318 (427)
74 KOG1814 Predicted E3 ubiquitin 96.1 0.0021 4.6E-08 57.9 1.0 46 107-153 184-237 (445)
75 PF14447 Prok-RING_4: Prokaryo 96.1 0.0031 6.8E-08 40.9 1.5 45 108-158 8-52 (55)
76 PF12906 RINGv: RING-variant d 96.1 0.0031 6.7E-08 39.9 1.4 40 110-151 1-47 (47)
77 PF04641 Rtf2: Rtf2 RING-finge 96.1 0.009 2E-07 51.6 4.8 53 105-158 111-163 (260)
78 PHA02862 5L protein; Provision 96.0 0.0047 1E-07 48.0 2.3 45 108-157 3-54 (156)
79 COG5236 Uncharacterized conser 95.8 0.0068 1.5E-07 53.6 2.8 48 106-157 60-109 (493)
80 KOG4739 Uncharacterized protei 95.6 0.0041 9E-08 52.4 0.8 45 109-157 5-49 (233)
81 PHA02825 LAP/PHD finger-like p 95.6 0.014 3.1E-07 46.2 3.7 48 106-158 7-61 (162)
82 KOG4185 Predicted E3 ubiquitin 95.5 0.01 2.2E-07 52.0 2.7 48 107-155 3-54 (296)
83 PHA03096 p28-like protein; Pro 95.4 0.0069 1.5E-07 52.9 1.5 45 109-153 180-231 (284)
84 KOG2932 E3 ubiquitin ligase in 95.4 0.0068 1.5E-07 52.8 1.2 44 107-155 90-133 (389)
85 PF08746 zf-RING-like: RING-li 95.2 0.011 2.4E-07 36.6 1.5 41 110-151 1-43 (43)
86 KOG2114 Vacuolar assembly/sort 95.2 0.0084 1.8E-07 58.5 1.3 43 107-155 840-882 (933)
87 KOG1952 Transcription factor N 95.0 0.011 2.4E-07 57.7 1.5 49 107-155 191-246 (950)
88 KOG0827 Predicted E3 ubiquitin 94.7 0.0021 4.5E-08 57.5 -3.7 49 107-156 196-245 (465)
89 KOG1001 Helicase-like transcri 94.3 0.018 3.8E-07 56.1 1.2 49 108-161 455-505 (674)
90 PF02439 Adeno_E3_CR2: Adenovi 93.7 0.15 3.3E-06 30.4 3.9 29 20-48 5-33 (38)
91 KOG3268 Predicted E3 ubiquitin 93.6 0.042 9E-07 44.3 1.9 31 128-158 189-230 (234)
92 KOG1940 Zn-finger protein [Gen 93.3 0.049 1.1E-06 47.2 2.0 45 108-153 159-204 (276)
93 PF07800 DUF1644: Protein of u 93.3 0.056 1.2E-06 42.8 2.1 52 107-161 2-96 (162)
94 KOG2034 Vacuolar sorting prote 93.1 0.039 8.5E-07 54.3 1.1 34 107-142 817-850 (911)
95 COG5175 MOT2 Transcriptional r 92.8 0.076 1.7E-06 47.0 2.4 50 107-156 14-64 (480)
96 KOG1100 Predicted E3 ubiquitin 92.7 0.047 1E-06 45.6 1.0 41 110-158 161-202 (207)
97 PF14446 Prok-RING_1: Prokaryo 92.7 0.14 3E-06 33.2 2.9 40 107-150 5-44 (54)
98 KOG3002 Zn finger protein [Gen 92.3 0.082 1.8E-06 46.5 2.0 42 107-156 48-91 (299)
99 KOG2817 Predicted E3 ubiquitin 92.3 0.45 9.7E-06 43.0 6.7 44 107-151 334-380 (394)
100 KOG3800 Predicted E3 ubiquitin 91.3 0.16 3.5E-06 44.0 2.6 47 109-155 2-50 (300)
101 PF03854 zf-P11: P-11 zinc fin 91.1 0.076 1.6E-06 33.4 0.3 30 129-158 18-48 (50)
102 KOG0309 Conserved WD40 repeat- 90.9 0.13 2.7E-06 50.1 1.8 25 125-150 1045-1069(1081)
103 KOG0298 DEAD box-containing he 90.8 0.065 1.4E-06 54.8 -0.3 44 107-153 1153-1196(1394)
104 PF10272 Tmpp129: Putative tra 90.1 0.15 3.3E-06 45.9 1.5 29 129-157 311-352 (358)
105 PHA02650 hypothetical protein; 89.7 0.98 2.1E-05 31.5 4.9 30 18-47 46-75 (81)
106 KOG4362 Transcriptional regula 89.3 0.1 2.2E-06 50.5 -0.3 49 107-159 21-72 (684)
107 KOG1812 Predicted E3 ubiquitin 88.1 0.21 4.6E-06 45.6 1.0 38 107-145 146-184 (384)
108 KOG3053 Uncharacterized conser 87.9 0.19 4.1E-06 42.9 0.5 49 106-155 19-81 (293)
109 PF05290 Baculo_IE-1: Baculovi 87.6 0.37 8E-06 37.1 1.9 52 107-158 80-134 (140)
110 PF01102 Glycophorin_A: Glycop 87.5 1 2.2E-05 34.4 4.2 27 11-38 58-84 (122)
111 KOG4367 Predicted Zn-finger pr 87.0 0.32 6.8E-06 44.6 1.4 33 107-143 4-36 (699)
112 PF08114 PMP1_2: ATPase proteo 87.0 0.74 1.6E-05 27.9 2.5 22 28-49 17-38 (43)
113 KOG3899 Uncharacterized conser 86.8 0.27 5.8E-06 42.8 0.8 30 129-158 325-367 (381)
114 COG5220 TFB3 Cdk activating ki 86.2 0.24 5.2E-06 41.9 0.2 47 107-153 10-61 (314)
115 PHA02844 putative transmembran 86.0 1.7 3.6E-05 30.0 4.2 26 20-45 47-72 (75)
116 PF02009 Rifin_STEVOR: Rifin/s 86.0 1.3 2.9E-05 39.0 4.7 13 32-44 269-281 (299)
117 KOG3113 Uncharacterized conser 83.7 1.3 2.9E-05 37.8 3.5 52 105-158 109-160 (293)
118 PF15102 TMEM154: TMEM154 prot 83.4 0.23 5E-06 38.9 -1.0 8 136-143 128-135 (146)
119 PF06906 DUF1272: Protein of u 82.4 2.5 5.4E-05 27.6 3.6 47 108-158 6-54 (57)
120 KOG1829 Uncharacterized conser 81.8 0.46 9.9E-06 45.4 0.1 43 107-153 511-558 (580)
121 PF13908 Shisa: Wnt and FGF in 81.5 0.96 2.1E-05 36.6 1.9 6 43-48 102-107 (179)
122 PF02891 zf-MIZ: MIZ/SP-RING z 81.1 1.3 2.9E-05 28.1 2.1 43 108-154 3-50 (50)
123 KOG0802 E3 ubiquitin ligase [P 81.0 1 2.2E-05 43.1 2.1 47 107-161 479-525 (543)
124 KOG3161 Predicted E3 ubiquitin 80.5 0.56 1.2E-05 45.0 0.2 44 107-153 11-54 (861)
125 KOG1609 Protein involved in mR 80.3 1 2.2E-05 39.4 1.8 50 107-157 78-135 (323)
126 PHA02819 hypothetical protein; 79.2 6.7 0.00015 26.7 5.0 26 18-43 43-68 (71)
127 PF15050 SCIMP: SCIMP protein 79.2 4.5 9.8E-05 30.6 4.6 16 32-47 21-36 (133)
128 PF07975 C1_4: TFIIH C1-like d 78.6 1.7 3.8E-05 27.8 2.0 41 110-151 2-49 (51)
129 PF01102 Glycophorin_A: Glycop 77.9 4.4 9.5E-05 30.9 4.3 37 12-48 55-91 (122)
130 KOG0269 WD40 repeat-containing 77.8 1.7 3.7E-05 42.5 2.5 40 109-150 781-820 (839)
131 PHA03054 IMV membrane protein; 77.7 7 0.00015 26.7 4.7 25 19-43 46-70 (72)
132 COG5183 SSM4 Protein involved 77.5 1.4 3E-05 43.5 1.9 50 107-158 12-68 (1175)
133 PF13901 DUF4206: Domain of un 77.5 1.8 3.9E-05 35.9 2.3 41 107-153 152-197 (202)
134 PF12575 DUF3753: Protein of u 77.4 6.4 0.00014 27.1 4.6 13 30-42 57-69 (72)
135 PTZ00370 STEVOR; Provisional 76.3 3.8 8.2E-05 35.8 4.0 27 26-52 260-286 (296)
136 KOG0825 PHD Zn-finger protein 76.0 1.9 4.1E-05 42.5 2.2 52 107-158 96-156 (1134)
137 smart00678 WWE Domain in Delte 75.9 0.88 1.9E-05 31.1 0.0 25 211-235 3-27 (73)
138 PHA02975 hypothetical protein; 75.5 9.8 0.00021 25.8 5.0 16 28-43 51-66 (69)
139 PF11023 DUF2614: Protein of u 75.3 16 0.00035 27.4 6.5 23 140-162 80-102 (114)
140 PF10717 ODV-E18: Occlusion-de 74.7 7.4 0.00016 27.5 4.4 26 12-37 18-43 (85)
141 PF08374 Protocadherin: Protoc 74.5 2.2 4.8E-05 35.6 2.0 30 16-46 35-64 (221)
142 PF05568 ASFV_J13L: African sw 73.8 7.8 0.00017 30.4 4.7 17 15-31 25-41 (189)
143 KOG4718 Non-SMC (structural ma 73.7 1.8 3.8E-05 36.1 1.3 43 108-153 182-224 (235)
144 PF05393 Hum_adeno_E3A: Human 73.7 5.7 0.00012 28.4 3.6 6 43-48 54-59 (94)
145 PTZ00046 rifin; Provisional 72.3 4.9 0.00011 36.3 3.8 9 36-44 332-340 (358)
146 TIGR01477 RIFIN variant surfac 72.1 5.4 0.00012 35.9 4.0 9 36-44 327-335 (353)
147 KOG2807 RNA polymerase II tran 70.0 3.6 7.9E-05 36.5 2.4 45 107-152 330-374 (378)
148 KOG2068 MOT2 transcription fac 69.9 5.4 0.00012 35.5 3.5 48 107-155 249-297 (327)
149 PF10571 UPF0547: Uncharacteri 69.8 3 6.6E-05 22.8 1.3 23 109-133 2-24 (26)
150 PF07010 Endomucin: Endomucin; 69.7 7.2 0.00016 32.9 4.0 29 19-47 189-217 (259)
151 PF06679 DUF1180: Protein of u 69.6 9.9 0.00021 30.5 4.7 29 20-48 93-121 (163)
152 PRK01844 hypothetical protein; 69.4 23 0.0005 24.3 5.8 12 38-49 21-32 (72)
153 PF06305 DUF1049: Protein of u 69.3 15 0.00033 24.3 5.0 24 20-43 20-43 (68)
154 PRK00523 hypothetical protein; 68.4 26 0.00057 24.1 5.9 13 37-49 21-33 (72)
155 COG5109 Uncharacterized conser 68.1 3.6 7.7E-05 36.4 2.0 44 107-151 336-382 (396)
156 smart00249 PHD PHD zinc finger 67.9 3.5 7.5E-05 24.6 1.4 30 110-140 2-31 (47)
157 KOG2066 Vacuolar assembly/sort 67.1 1.9 4.2E-05 42.4 0.2 43 107-151 784-830 (846)
158 KOG1815 Predicted E3 ubiquitin 66.5 3.2 7E-05 38.6 1.5 35 107-144 70-104 (444)
159 smart00132 LIM Zinc-binding do 66.1 6.2 0.00014 22.5 2.3 36 110-155 2-37 (39)
160 KOG1812 Predicted E3 ubiquitin 65.4 2.8 6E-05 38.4 0.9 45 108-152 307-352 (384)
161 TIGR00622 ssl1 transcription f 63.6 10 0.00022 28.5 3.4 45 108-152 56-110 (112)
162 PF03229 Alpha_GJ: Alphavirus 62.4 28 0.0006 26.3 5.4 21 32-52 98-118 (126)
163 PHA02849 putative transmembran 62.2 21 0.00046 24.9 4.5 24 20-44 17-40 (82)
164 PF02009 Rifin_STEVOR: Rifin/s 61.4 13 0.00029 32.7 4.4 26 24-49 258-283 (299)
165 KOG2113 Predicted RNA binding 61.1 7.2 0.00016 34.5 2.6 50 100-155 336-386 (394)
166 KOG3039 Uncharacterized conser 61.0 6.9 0.00015 33.4 2.4 32 107-142 43-74 (303)
167 PHA02692 hypothetical protein; 60.6 23 0.0005 24.2 4.4 16 28-43 53-68 (70)
168 KOG3005 GIY-YIG type nuclease 60.3 4.8 0.0001 34.8 1.3 49 108-156 183-243 (276)
169 PF00628 PHD: PHD-finger; Int 60.1 4 8.6E-05 25.5 0.6 44 109-153 1-50 (51)
170 PF06844 DUF1244: Protein of u 59.2 5.3 0.00011 27.0 1.1 12 132-143 11-22 (68)
171 PF15179 Myc_target_1: Myc tar 59.2 20 0.00043 29.3 4.5 33 17-49 18-50 (197)
172 KOG3842 Adaptor protein Pellin 58.6 12 0.00026 33.2 3.5 50 106-156 340-414 (429)
173 PF08114 PMP1_2: ATPase proteo 58.2 11 0.00025 22.8 2.3 27 28-54 13-39 (43)
174 PF00412 LIM: LIM domain; Int 57.9 6.2 0.00013 25.1 1.3 39 110-158 1-39 (58)
175 PF10497 zf-4CXXC_R1: Zinc-fin 57.9 10 0.00022 28.0 2.6 47 107-153 7-69 (105)
176 PF15176 LRR19-TM: Leucine-ric 57.9 31 0.00067 25.3 5.0 28 18-45 14-41 (102)
177 PF14654 Epiglycanin_C: Mucin, 57.6 18 0.0004 26.3 3.7 27 17-43 17-43 (106)
178 KOG3579 Predicted E3 ubiquitin 57.4 4.9 0.00011 35.0 0.9 39 107-145 268-306 (352)
179 PF14914 LRRC37AB_C: LRRC37A/B 55.3 20 0.00043 28.2 3.9 23 15-37 116-138 (154)
180 PF02038 ATP1G1_PLM_MAT8: ATP1 55.3 31 0.00068 22.0 4.1 35 12-46 5-40 (50)
181 PF01363 FYVE: FYVE zinc finge 55.1 5 0.00011 26.9 0.5 36 107-142 9-44 (69)
182 PF05568 ASFV_J13L: African sw 54.8 15 0.00032 28.9 3.1 25 12-36 25-49 (189)
183 PF13719 zinc_ribbon_5: zinc-r 54.5 7.2 0.00016 23.0 1.1 13 109-121 4-16 (37)
184 PF14316 DUF4381: Domain of un 53.2 19 0.00041 28.0 3.6 10 50-59 49-58 (146)
185 PLN02248 cellulose synthase-li 53.0 27 0.0006 36.2 5.4 34 129-162 150-183 (1135)
186 PF02439 Adeno_E3_CR2: Adenovi 52.9 29 0.00063 20.8 3.4 19 22-40 10-28 (38)
187 COG3813 Uncharacterized protei 52.8 19 0.00041 24.8 3.0 47 109-159 7-55 (84)
188 PF04710 Pellino: Pellino; In 52.6 4.6 0.0001 36.8 0.0 25 128-155 308-338 (416)
189 PF14979 TMEM52: Transmembrane 52.4 27 0.00059 27.4 4.2 34 16-49 15-50 (154)
190 PHA03099 epidermal growth fact 52.3 15 0.00032 28.3 2.7 21 28-48 109-129 (139)
191 cd00065 FYVE FYVE domain; Zinc 51.8 12 0.00027 23.7 2.0 35 108-142 3-37 (57)
192 PF11044 TMEMspv1-c74-12: Plec 51.1 58 0.0013 20.2 4.7 12 20-31 3-14 (49)
193 PF15176 LRR19-TM: Leucine-ric 50.9 47 0.001 24.4 5.0 32 17-48 16-50 (102)
194 COG1862 YajC Preprotein transl 50.6 22 0.00047 26.0 3.3 9 34-42 19-27 (97)
195 PF04710 Pellino: Pellino; In 49.7 5.4 0.00012 36.3 0.0 50 107-157 328-402 (416)
196 PF15050 SCIMP: SCIMP protein 49.5 34 0.00074 26.0 4.2 22 31-52 16-37 (133)
197 PF04423 Rad50_zn_hook: Rad50 49.2 6.4 0.00014 25.2 0.3 11 147-157 22-32 (54)
198 PF10577 UPF0560: Uncharacteri 48.5 23 0.00049 35.3 4.0 18 20-37 273-290 (807)
199 PF11346 DUF3149: Protein of u 48.5 53 0.0011 20.1 4.2 10 39-48 27-36 (42)
200 PF08113 CoxIIa: Cytochrome c 48.4 53 0.0012 19.0 4.2 6 32-37 19-24 (34)
201 PF13717 zinc_ribbon_4: zinc-r 48.4 9.5 0.00021 22.4 0.9 13 109-121 4-16 (36)
202 PF15298 AJAP1_PANP_C: AJAP1/P 47.6 4.2 9.2E-05 33.5 -0.9 37 19-55 99-135 (205)
203 smart00064 FYVE Protein presen 47.5 18 0.00038 24.0 2.3 36 107-142 10-45 (68)
204 KOG2846 Predicted membrane pro 46.9 31 0.00067 30.7 4.2 30 129-158 223-255 (328)
205 PF07191 zinc-ribbons_6: zinc- 46.6 1.9 4.2E-05 29.5 -2.6 40 108-156 2-41 (70)
206 KOG2979 Protein involved in DN 46.3 13 0.00028 32.0 1.7 42 107-151 176-219 (262)
207 PF07069 PRRSV_2b: Porcine rep 46.2 60 0.0013 21.6 4.5 29 22-50 30-58 (73)
208 PF11057 Cortexin: Cortexin of 46.1 30 0.00064 24.0 3.1 12 35-46 39-50 (81)
209 PF14584 DUF4446: Protein of u 45.6 43 0.00093 26.5 4.5 11 106-116 96-106 (151)
210 PF04216 FdhE: Protein involve 45.4 2.6 5.6E-05 36.9 -2.7 43 108-153 173-219 (290)
211 PF09049 SNN_transmemb: Stanni 44.8 38 0.00081 19.1 2.8 7 1-7 1-7 (33)
212 PF02825 WWE: WWE domain; Int 44.6 5.2 0.00011 26.9 -0.8 27 209-235 8-34 (72)
213 PHA03054 IMV membrane protein; 44.4 52 0.0011 22.5 4.0 26 14-39 44-69 (72)
214 PF06365 CD34_antigen: CD34/Po 44.3 20 0.00043 29.8 2.5 23 20-42 101-123 (202)
215 PTZ00046 rifin; Provisional 44.2 35 0.00075 30.9 4.2 28 23-50 316-343 (358)
216 PF06676 DUF1178: Protein of u 44.1 17 0.00038 28.6 2.0 31 129-164 10-51 (148)
217 PHA02650 hypothetical protein; 44.1 53 0.0011 23.0 4.1 28 15-42 46-73 (81)
218 PF06024 DUF912: Nucleopolyhed 43.9 7 0.00015 28.7 -0.2 16 20-35 60-75 (101)
219 PF05434 Tmemb_9: TMEM9; Inte 43.8 17 0.00036 28.7 1.9 30 19-48 55-84 (149)
220 PF05454 DAG1: Dystroglycan (D 43.7 7.7 0.00017 34.1 0.0 7 110-116 210-216 (290)
221 PHA02844 putative transmembran 43.5 51 0.0011 22.8 3.9 25 15-39 45-69 (75)
222 TIGR01477 RIFIN variant surfac 43.3 37 0.0008 30.7 4.2 28 23-50 311-338 (353)
223 PHA03030 hypothetical protein; 43.3 14 0.00031 27.1 1.3 15 33-47 12-26 (122)
224 PF06750 DiS_P_DiS: Bacterial 43.2 23 0.00051 25.4 2.5 37 108-157 34-70 (92)
225 PF07406 NICE-3: NICE-3 protei 42.5 22 0.00047 29.2 2.4 8 135-142 126-133 (186)
226 KOG2231 Predicted E3 ubiquitin 42.5 24 0.00052 34.6 3.1 48 109-160 2-56 (669)
227 PF07010 Endomucin: Endomucin; 42.4 36 0.00078 28.8 3.7 25 23-47 189-213 (259)
228 PHA02819 hypothetical protein; 42.4 56 0.0012 22.4 4.0 27 13-39 41-67 (71)
229 PF00558 Vpu: Vpu protein; In 41.6 40 0.00087 23.8 3.3 19 30-48 19-37 (81)
230 PHA02657 hypothetical protein; 41.5 49 0.0011 23.5 3.7 19 20-38 27-45 (95)
231 PF12877 DUF3827: Domain of un 41.5 11 0.00024 36.5 0.7 12 34-45 283-294 (684)
232 PRK07352 F0F1 ATP synthase sub 40.4 72 0.0016 25.5 5.2 18 9-26 10-27 (174)
233 PF14311 DUF4379: Domain of un 40.3 16 0.00035 23.3 1.2 22 129-151 34-55 (55)
234 PF05399 EVI2A: Ectropic viral 40.1 60 0.0013 27.2 4.6 15 20-34 129-143 (227)
235 KOG2041 WD40 repeat protein [G 39.7 20 0.00044 35.5 2.1 45 107-155 1131-1184(1189)
236 CHL00019 atpF ATP synthase CF0 39.3 48 0.001 26.8 4.0 16 10-25 16-31 (184)
237 PF05393 Hum_adeno_E3A: Human 39.3 50 0.0011 23.6 3.5 26 23-48 38-63 (94)
238 PF04277 OAD_gamma: Oxaloaceta 39.1 74 0.0016 21.7 4.5 25 21-45 5-29 (79)
239 PHA02681 ORF089 virion membran 39.1 47 0.001 23.5 3.3 12 78-89 50-61 (92)
240 KOG0860 Synaptobrevin/VAMP-lik 39.0 40 0.00087 25.4 3.2 23 17-39 88-110 (116)
241 PHA03240 envelope glycoprotein 38.0 50 0.0011 27.7 3.9 10 40-49 233-242 (258)
242 COG4847 Uncharacterized protei 37.9 24 0.00052 25.6 1.8 35 107-143 6-40 (103)
243 KOG3637 Vitronectin receptor, 37.3 19 0.00041 37.3 1.6 34 15-48 973-1006(1030)
244 cd00350 rubredoxin_like Rubred 37.2 16 0.00034 20.9 0.6 9 145-153 17-25 (33)
245 PRK14473 F0F1 ATP synthase sub 37.1 83 0.0018 24.8 5.1 28 14-42 4-31 (164)
246 PLN02436 cellulose synthase A 36.9 25 0.00053 36.3 2.3 50 107-156 36-89 (1094)
247 PHA02902 putative IMV membrane 36.2 65 0.0014 21.6 3.5 9 79-87 53-61 (70)
248 PF07649 C1_3: C1-like domain; 36.2 27 0.00059 19.3 1.5 29 109-138 2-30 (30)
249 PLN02189 cellulose synthase 36.1 26 0.00056 36.1 2.3 50 107-156 34-87 (1040)
250 PF14569 zf-UDP: Zinc-binding 36.1 54 0.0012 22.9 3.2 51 107-157 9-63 (80)
251 PF14575 EphA2_TM: Ephrin type 35.9 23 0.0005 24.5 1.4 9 25-33 4-12 (75)
252 COG5627 MMS21 DNA repair prote 35.5 21 0.00046 30.3 1.4 40 107-149 189-230 (275)
253 cd04718 BAH_plant_2 BAH, or Br 35.1 19 0.00041 28.4 0.9 27 132-158 1-31 (148)
254 smart00647 IBR In Between Ring 34.3 12 0.00026 24.1 -0.2 17 125-141 42-58 (64)
255 PRK10747 putative protoheme IX 33.6 74 0.0016 28.9 4.8 8 19-26 40-47 (398)
256 KOG4185 Predicted E3 ubiquitin 33.4 6.1 0.00013 34.4 -2.3 49 107-155 207-266 (296)
257 PF10577 UPF0560: Uncharacteri 33.2 32 0.0007 34.3 2.4 29 19-47 276-304 (807)
258 KOG1729 FYVE finger containing 33.1 9.3 0.0002 33.6 -1.1 34 109-143 216-249 (288)
259 PF11174 DUF2970: Protein of u 32.9 41 0.00089 21.9 2.1 8 8-15 19-26 (56)
260 PF10873 DUF2668: Protein of u 32.9 34 0.00074 26.8 2.0 28 21-48 63-90 (155)
261 COG4741 Predicted secreted end 32.2 66 0.0014 25.6 3.5 15 29-43 11-25 (175)
262 PF05605 zf-Di19: Drought indu 32.2 23 0.00049 22.5 0.8 14 107-120 2-15 (54)
263 PHA02692 hypothetical protein; 32.1 1.4E+02 0.0031 20.3 4.7 14 25-38 53-66 (70)
264 KOG1245 Chromatin remodeling c 31.6 16 0.00035 39.0 0.1 48 107-155 1108-1159(1404)
265 PLN02638 cellulose synthase A 31.6 33 0.00072 35.5 2.2 50 107-156 17-70 (1079)
266 PRK01844 hypothetical protein; 31.5 1.4E+02 0.003 20.6 4.6 29 20-48 7-35 (72)
267 TIGR01562 FdhE formate dehydro 31.2 13 0.00027 33.0 -0.6 46 107-153 184-232 (305)
268 PF07406 NICE-3: NICE-3 protei 31.0 89 0.0019 25.6 4.3 10 39-48 29-38 (186)
269 PF10083 DUF2321: Uncharacteri 30.8 18 0.00039 28.7 0.2 45 111-158 8-52 (158)
270 PRK14472 F0F1 ATP synthase sub 30.6 1.4E+02 0.003 23.8 5.4 11 13-23 13-23 (175)
271 COG3492 Uncharacterized protei 30.2 21 0.00045 25.7 0.4 12 132-143 42-53 (104)
272 PF08374 Protocadherin: Protoc 30.0 23 0.0005 29.7 0.7 30 19-49 35-64 (221)
273 PRK03564 formate dehydrogenase 29.6 19 0.00042 31.9 0.2 45 107-153 187-234 (309)
274 PF10146 zf-C4H2: Zinc finger- 29.1 49 0.0011 28.0 2.6 30 133-162 196-225 (230)
275 PF05715 zf-piccolo: Piccolo Z 29.1 41 0.0009 22.2 1.6 12 145-156 2-13 (61)
276 KOG4451 Uncharacterized conser 29.1 45 0.00097 28.3 2.3 30 133-162 251-280 (286)
277 PF13832 zf-HC5HC2H_2: PHD-zin 29.1 47 0.001 24.2 2.2 34 107-141 55-88 (110)
278 PF12955 DUF3844: Domain of un 29.1 1.2E+02 0.0026 22.4 4.3 22 16-37 64-85 (103)
279 PRK11088 rrmA 23S rRNA methylt 28.6 39 0.00085 28.9 2.0 25 108-133 3-27 (272)
280 PRK14710 hypothetical protein; 28.6 74 0.0016 21.8 2.8 9 18-26 8-16 (86)
281 KOG4218 Nuclear hormone recept 28.5 45 0.00097 30.1 2.3 20 107-127 15-34 (475)
282 KOG4577 Transcription factor L 28.4 16 0.00035 31.9 -0.4 41 107-157 92-132 (383)
283 PRK12705 hypothetical protein; 28.2 1.1E+02 0.0024 29.2 5.0 8 19-26 4-11 (508)
284 PF00737 PsbH: Photosystem II 28.2 1.4E+02 0.003 19.1 3.9 25 16-40 21-45 (52)
285 PRK13460 F0F1 ATP synthase sub 28.2 1.7E+02 0.0038 23.2 5.6 12 11-22 9-20 (173)
286 PF06143 Baculo_11_kDa: Baculo 28.1 1.6E+02 0.0035 20.9 4.6 26 17-42 29-55 (84)
287 PF12768 Rax2: Cortical protei 27.9 42 0.00091 29.4 2.0 33 15-47 225-257 (281)
288 PF08999 SP_C-Propep: Surfacta 27.7 1.3E+02 0.0029 21.2 4.1 10 17-26 32-41 (93)
289 PF10883 DUF2681: Protein of u 27.6 1.3E+02 0.0028 21.5 4.2 23 28-50 7-29 (87)
290 PF05151 PsbM: Photosystem II 27.6 1.2E+02 0.0027 17.3 3.2 14 29-42 14-27 (31)
291 PF09723 Zn-ribbon_8: Zinc rib 27.5 13 0.00028 22.5 -0.9 25 128-153 10-34 (42)
292 PF03672 UPF0154: Uncharacteri 27.4 1.6E+02 0.0035 19.7 4.3 7 42-48 18-24 (64)
293 KOG1815 Predicted E3 ubiquitin 27.2 20 0.00043 33.4 -0.1 37 108-144 227-267 (444)
294 PF01708 Gemini_mov: Geminivir 27.2 54 0.0012 23.6 2.1 19 19-37 36-54 (91)
295 PF09943 DUF2175: Uncharacteri 27.0 45 0.00098 24.5 1.7 33 108-142 3-35 (101)
296 PF13771 zf-HC5HC2H: PHD-like 26.9 37 0.00081 23.6 1.3 32 108-140 37-68 (90)
297 COG2268 Uncharacterized protei 26.8 50 0.0011 31.6 2.5 6 112-117 96-101 (548)
298 KOG1512 PHD Zn-finger protein 26.8 30 0.00065 30.3 0.9 30 109-139 316-345 (381)
299 PRK05978 hypothetical protein; 26.8 48 0.0011 26.1 2.0 24 130-158 42-65 (148)
300 COG1862 YajC Preprotein transl 26.5 74 0.0016 23.2 2.8 21 29-49 11-31 (97)
301 PF04906 Tweety: Tweety; Inte 26.5 80 0.0017 29.1 3.7 15 35-49 36-50 (406)
302 KOG3799 Rab3 effector RIM1 and 26.3 39 0.00084 26.2 1.3 44 104-155 62-117 (169)
303 PF06679 DUF1180: Protein of u 26.3 74 0.0016 25.5 3.0 27 23-49 99-125 (163)
304 PF04478 Mid2: Mid2 like cell 25.7 3.9 8.4E-05 32.4 -4.3 15 19-33 49-63 (154)
305 PF15099 PIRT: Phosphoinositid 25.6 66 0.0014 24.6 2.4 11 40-50 100-110 (129)
306 PRK04989 psbM photosystem II r 25.5 1.3E+02 0.0028 17.6 3.1 15 28-42 13-27 (35)
307 PF06305 DUF1049: Protein of u 25.2 2E+02 0.0043 18.7 5.1 8 18-25 22-29 (68)
308 PRK09039 hypothetical protein; 25.1 1.3E+02 0.0028 27.0 4.7 37 13-50 12-48 (343)
309 KOG2071 mRNA cleavage and poly 24.9 34 0.00074 32.9 1.0 33 107-141 513-556 (579)
310 PLN02915 cellulose synthase A 24.7 50 0.0011 34.1 2.1 49 107-156 15-68 (1044)
311 PF04689 S1FA: DNA binding pro 24.6 51 0.0011 22.1 1.5 27 16-42 10-36 (69)
312 PF06103 DUF948: Bacterial pro 24.4 1.1E+02 0.0025 21.3 3.4 14 29-42 9-22 (90)
313 PF05795 Plasmodium_Vir: Plasm 24.2 57 0.0012 28.6 2.2 7 44-50 307-313 (354)
314 PF10215 Ost4: Oligosaccaryltr 24.2 1.6E+02 0.0035 17.2 4.2 19 23-41 10-28 (35)
315 PLN02400 cellulose synthase 23.9 40 0.00086 35.0 1.3 50 107-156 36-89 (1085)
316 PLN00055 photosystem II reacti 23.6 1.3E+02 0.0029 20.7 3.4 24 17-40 37-60 (73)
317 PF06937 EURL: EURL protein; 23.5 67 0.0015 27.9 2.4 43 107-149 30-74 (285)
318 PF07282 OrfB_Zn_ribbon: Putat 23.3 73 0.0016 21.0 2.2 31 108-138 29-61 (69)
319 CHL00066 psbH photosystem II p 23.2 1.4E+02 0.003 20.6 3.4 20 18-37 38-57 (73)
320 PF11446 DUF2897: Protein of u 23.1 1.2E+02 0.0027 19.6 3.1 6 20-25 5-10 (55)
321 PF11337 DUF3139: Protein of u 23.0 1.3E+02 0.0028 21.0 3.4 9 79-87 48-56 (85)
322 PRK04023 DNA polymerase II lar 22.9 57 0.0012 33.6 2.1 46 107-158 626-676 (1121)
323 PHA03291 envelope glycoprotein 22.7 45 0.00097 30.1 1.2 12 37-48 306-317 (401)
324 TIGR03038 PS_II_psbM photosyst 22.5 1.6E+02 0.0036 17.0 3.1 15 28-42 13-27 (33)
325 PF05510 Sarcoglycan_2: Sarcog 22.4 1.2E+02 0.0027 27.7 4.0 9 39-47 303-311 (386)
326 PF12729 4HB_MCP_1: Four helix 22.3 1.9E+02 0.004 21.8 4.7 23 16-38 4-26 (181)
327 PRK05886 yajC preprotein trans 22.3 1.1E+02 0.0024 22.8 3.1 9 36-44 13-21 (109)
328 COG5233 GRH1 Peripheral Golgi 22.3 1.5E+02 0.0032 26.7 4.3 23 132-154 354-376 (417)
329 KOG0956 PHD finger protein AF1 22.2 32 0.00069 33.8 0.2 46 109-155 119-181 (900)
330 PF15106 TMEM156: TMEM156 prot 22.1 1.8E+02 0.0038 24.4 4.5 21 27-47 180-200 (226)
331 PF06667 PspB: Phage shock pro 22.0 2E+02 0.0044 19.9 4.1 18 28-45 9-26 (75)
332 KOG4323 Polycomb-like PHD Zn-f 22.0 60 0.0013 30.5 1.9 49 107-155 168-225 (464)
333 smart00531 TFIIE Transcription 21.9 73 0.0016 24.8 2.2 15 145-159 123-137 (147)
334 PTZ00303 phosphatidylinositol 21.8 57 0.0012 32.8 1.8 32 108-142 461-500 (1374)
335 TIGR00540 hemY_coli hemY prote 21.6 1.3E+02 0.0028 27.3 4.1 7 17-23 40-46 (409)
336 PF15069 FAM163: FAM163 family 21.5 41 0.00089 26.3 0.7 6 146-151 92-97 (143)
337 KOG1244 Predicted transcriptio 21.4 25 0.00055 30.6 -0.6 46 109-155 283-332 (336)
338 PLN02195 cellulose synthase A 21.3 73 0.0016 32.7 2.5 49 107-156 6-59 (977)
339 PF01788 PsbJ: PsbJ; InterPro 21.2 2E+02 0.0044 17.3 3.6 15 20-34 10-24 (40)
340 PRK13415 flagella biosynthesis 20.7 1.8E+02 0.0038 24.6 4.3 14 35-48 79-92 (219)
341 PF14353 CpXC: CpXC protein 20.6 1E+02 0.0022 23.2 2.7 45 109-157 3-50 (128)
342 PRK11486 flagellar biosynthesi 20.6 2.2E+02 0.0048 21.7 4.5 14 25-38 22-35 (124)
343 PHA03286 envelope glycoprotein 20.5 1.5E+02 0.0032 27.8 4.1 10 140-151 476-485 (492)
344 PF05502 Dynactin_p62: Dynacti 20.5 77 0.0017 30.0 2.4 14 107-120 26-39 (483)
345 COG2835 Uncharacterized conser 20.5 42 0.00092 22.2 0.5 12 147-158 10-21 (60)
346 PF09986 DUF2225: Uncharacteri 20.5 33 0.00072 28.6 -0.0 49 107-158 5-61 (214)
347 PLN00090 photosystem II reacti 20.4 1.9E+02 0.0041 21.1 3.8 30 15-44 70-99 (113)
348 PF02318 FYVE_2: FYVE-type zin 20.4 52 0.0011 24.6 1.0 45 107-153 54-102 (118)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=8.1e-19 Score=153.94 Aligned_cols=75 Identities=33% Similarity=0.827 Sum_probs=62.8
Q ss_pred CCCHHHHhhCCceeeecCCCCCCCCCCCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCC-CccccccCCC
Q 026517 79 GLDPTVIAALPIFVYKQTDGGQDDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHST-CPICRTGAEP 157 (237)
Q Consensus 79 ~~~~~~i~~lp~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~-CP~CR~~~~~ 157 (237)
.+.+..++++|...|+..+.... ...|+||+|+|..++.++.|| |+|.||..||++||.++.+ ||+|++.+..
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~~~-----~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDEDA-----TDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred hhHHHHHhhCCcEEeccccccCC-----CceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 34578899999999977654422 258999999999999999999 9999999999999987755 9999997755
Q ss_pred CC
Q 026517 158 RP 159 (237)
Q Consensus 158 ~~ 159 (237)
..
T Consensus 280 ~~ 281 (348)
T KOG4628|consen 280 DS 281 (348)
T ss_pred CC
Confidence 43
No 2
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.3e-14 Score=125.01 Aligned_cols=66 Identities=29% Similarity=0.741 Sum_probs=49.5
Q ss_pred HHHHhhCCceeeecCCCCCCCCCCCCCccccccccccCCc----------ceeecCCCCCCCchhHHHHHhcCCCCCccc
Q 026517 82 PTVIAALPIFVYKQTDGGQDDGLAAAIECAVCLSNLENEE----------MARVLPNCNHTFHAECIDKWLGSHSTCPIC 151 (237)
Q Consensus 82 ~~~i~~lp~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~----------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 151 (237)
++.-+-+|+.+..+..+. +..|.||++++-.+. ..+.|| |||+||.+|++.|++++++||+|
T Consensus 269 kdl~~~~~t~t~eql~n~-------D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPIC 340 (491)
T COG5243 269 KDLNAMYPTATEEQLTNS-------DRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPIC 340 (491)
T ss_pred hHHHhhcchhhhhhhcCC-------CCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcc
Confidence 334445566555444222 458999999954332 346888 99999999999999999999999
Q ss_pred cccC
Q 026517 152 RTGA 155 (237)
Q Consensus 152 R~~~ 155 (237)
|.++
T Consensus 341 r~p~ 344 (491)
T COG5243 341 RRPV 344 (491)
T ss_pred cCcc
Confidence 9995
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.54 E-value=1.2e-15 Score=96.13 Aligned_cols=43 Identities=47% Similarity=1.230 Sum_probs=40.1
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCcccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR 152 (237)
+|+||++.|..++.+..++ |||.||.+||..|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999999889999998 999999999999999999999997
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.40 E-value=2.2e-13 Score=114.96 Aligned_cols=76 Identities=30% Similarity=0.621 Sum_probs=56.0
Q ss_pred CCCCHHHHhhCCceeeecCCCCCCCCCCCCCccccccccccCCcc----eeecCCCCCCCchhHHHHHhcCCCCCccccc
Q 026517 78 TGLDPTVIAALPIFVYKQTDGGQDDGLAAAIECAVCLSNLENEEM----ARVLPNCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 78 ~~~~~~~i~~lp~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~----~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
.+.....++.+|.....-..... ...+.+|+||++.+..+.. +.+++.|+|.||..||..|+..+.+||+||.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~---~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~ 224 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYN---RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRT 224 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhc---CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCC
Confidence 44577888899988754322111 1235689999999876431 2345459999999999999999999999999
Q ss_pred cCC
Q 026517 154 GAE 156 (237)
Q Consensus 154 ~~~ 156 (237)
++.
T Consensus 225 ~~~ 227 (238)
T PHA02929 225 PFI 227 (238)
T ss_pred Eee
Confidence 875
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.31 E-value=9.8e-13 Score=91.77 Aligned_cols=43 Identities=44% Similarity=1.038 Sum_probs=34.5
Q ss_pred ccccccccccCC----------cceeecCCCCCCCchhHHHHHhcCCCCCcccc
Q 026517 109 ECAVCLSNLENE----------EMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152 (237)
Q Consensus 109 ~C~IC~~~~~~~----------~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR 152 (237)
.|+||++.|..+ -.+...+ |||.||..||.+||+.+.+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 599999999332 2344445 999999999999999999999998
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.8e-12 Score=110.66 Aligned_cols=50 Identities=50% Similarity=1.196 Sum_probs=45.5
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhc-CCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG-SHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~CR~~~~~ 157 (237)
.-+|+|||+.|...+.++++| |.|.||..|++.|+. -...||+||.++.+
T Consensus 323 GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 468999999999999999999 999999999999997 56679999998854
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.14 E-value=7.1e-11 Score=96.07 Aligned_cols=49 Identities=29% Similarity=0.817 Sum_probs=40.5
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC----------------CCCCccccccCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS----------------HSTCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----------------~~~CP~CR~~~~~~~ 159 (237)
..+|+||++.+..+ .+++ |||.||..||..|+.. ...||+||.++....
T Consensus 18 ~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 18 DFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred ccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 57899999999877 5666 9999999999999842 247999999986543
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.04 E-value=8.9e-11 Score=75.80 Aligned_cols=46 Identities=39% Similarity=0.942 Sum_probs=38.5
Q ss_pred CCccccccccccCCcceeecCCCCCC-CchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHT-FHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
+..|.||++.... +..+| |||. ||..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 3579999998654 47788 9998 999999999999999999999875
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.02 E-value=9.9e-11 Score=71.62 Aligned_cols=39 Identities=44% Similarity=1.180 Sum_probs=32.5
Q ss_pred cccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccc
Q 026517 110 CAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPIC 151 (237)
Q Consensus 110 C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 151 (237)
|+||++.+..+ +..++ |||.||..|+..|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998874 44666 99999999999999888899998
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.8e-10 Score=98.07 Aligned_cols=49 Identities=37% Similarity=0.912 Sum_probs=43.5
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
....|.+||+....+ ..+| |||+||..||..|......||+||..+.+.
T Consensus 238 a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 356899999998887 7787 999999999999999888999999988654
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.01 E-value=2.5e-10 Score=70.97 Aligned_cols=44 Identities=50% Similarity=1.177 Sum_probs=35.8
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcC-CCCCccccccC
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-HSTCPICRTGA 155 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~ 155 (237)
.|+||++.+.. .+...+ |||.||..|++.|+.. +..||.||..+
T Consensus 1 ~C~iC~~~~~~--~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999999843 344444 9999999999999987 67899998754
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.6e-10 Score=90.70 Aligned_cols=51 Identities=25% Similarity=0.724 Sum_probs=42.9
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
....|+|||+.+.....+. + +|||+||..||+.-+.....||+||+.|..+
T Consensus 130 ~~~~CPiCl~~~sek~~vs-T-kCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVS-T-KCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccccc-c-ccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3578999999999774432 3 5999999999999999999999999877554
No 13
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1e-09 Score=103.88 Aligned_cols=51 Identities=35% Similarity=0.855 Sum_probs=44.0
Q ss_pred CCccccccccccCCcc--eeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEM--ARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~--~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
+..|+||++.+..+.. ...+| |+|+||..|++.|+++..+||+||..+...
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred CCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 5689999999988544 57888 999999999999999999999999955443
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.95 E-value=4.6e-10 Score=79.42 Aligned_cols=51 Identities=31% Similarity=0.754 Sum_probs=37.4
Q ss_pred CCccccccccccCC--------cc-eeecCCCCCCCchhHHHHHhcC---CCCCccccccCCC
Q 026517 107 AIECAVCLSNLENE--------EM-ARVLPNCNHTFHAECIDKWLGS---HSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~--------~~-~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~CR~~~~~ 157 (237)
+..|.||...|... +. ..+...|+|.||..||..||.+ +..||+||++...
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 34799999888632 11 1233359999999999999975 4579999997643
No 15
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.94 E-value=3.9e-10 Score=70.06 Aligned_cols=38 Identities=32% Similarity=0.955 Sum_probs=29.8
Q ss_pred cccccccccCCcceeecCCCCCCCchhHHHHHhcCC----CCCccc
Q 026517 110 CAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH----STCPIC 151 (237)
Q Consensus 110 C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~C 151 (237)
|+||++.|..| ..|+ |||.||..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 7787 99999999999998654 359987
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.93 E-value=5e-10 Score=92.28 Aligned_cols=51 Identities=33% Similarity=0.808 Sum_probs=38.6
Q ss_pred CCccccccccccCC-----cceeecCCCCCCCchhHHHHHhcCC------CCCccccccCCC
Q 026517 107 AIECAVCLSNLENE-----EMARVLPNCNHTFHAECIDKWLGSH------STCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~-----~~~~~l~~C~H~fh~~Ci~~wl~~~------~~CP~CR~~~~~ 157 (237)
+.+|+||++....+ ...-+|++|+|.||..||..|...+ .+||+||..+..
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 46899999986432 1223566699999999999999643 359999997753
No 17
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=9.1e-10 Score=94.25 Aligned_cols=53 Identities=26% Similarity=0.478 Sum_probs=43.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC-CCCccccccCCCCCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH-STCPICRTGAEPRPQPES 163 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~CR~~~~~~~~~~~ 163 (237)
..+|+||+....-+ ..|+ |+|.||+.||+.-.... .+|++||.+|......++
T Consensus 7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence 45799999998877 5666 99999999999987554 469999999987665544
No 18
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.3e-09 Score=90.41 Aligned_cols=50 Identities=26% Similarity=0.757 Sum_probs=41.2
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC---CCccccccCCCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS---TCPICRTGAEPR 158 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~---~CP~CR~~~~~~ 158 (237)
....+|.|||+.-+++ +++. |||+||..||-+||+.+. .||+|+..+...
T Consensus 45 ~~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 3478999999998877 5555 999999999999996544 599999988553
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.87 E-value=1.8e-09 Score=72.69 Aligned_cols=46 Identities=28% Similarity=0.583 Sum_probs=40.9
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
..|+||++.|..+ ..++ |||+|++.||..|+..+.+||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4699999999988 6677 99999999999999888899999988744
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.83 E-value=2.6e-09 Score=67.03 Aligned_cols=44 Identities=34% Similarity=0.930 Sum_probs=37.1
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
.|.||++.|.......+++ |||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999995555667776 9999999999999866678999984
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.81 E-value=1.7e-09 Score=66.67 Aligned_cols=39 Identities=41% Similarity=1.200 Sum_probs=33.3
Q ss_pred cccccccccCCcceeecCCCCCCCchhHHHHHhc--CCCCCccc
Q 026517 110 CAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG--SHSTCPIC 151 (237)
Q Consensus 110 C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~C 151 (237)
|+||++.+..+. ..++ |||.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999998872 3666 999999999999998 45579998
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.76 E-value=5.3e-09 Score=94.43 Aligned_cols=48 Identities=27% Similarity=0.786 Sum_probs=42.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+||++.|..+ .+++ |||.||..||..|+.....||+||..+...
T Consensus 26 ~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 26 SLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 56899999999887 4666 999999999999998888899999987543
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.74 E-value=6.7e-09 Score=62.17 Aligned_cols=38 Identities=55% Similarity=1.340 Sum_probs=31.7
Q ss_pred cccccccccCCcceeecCCCCCCCchhHHHHHhc-CCCCCccc
Q 026517 110 CAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG-SHSTCPIC 151 (237)
Q Consensus 110 C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~C 151 (237)
|+||++.... ...++ |||.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~~~---~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD---PVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC---cEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998443 46777 999999999999997 56679987
No 24
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.5e-08 Score=88.81 Aligned_cols=51 Identities=27% Similarity=0.879 Sum_probs=38.9
Q ss_pred CCCccccccccccCCc--------------ceeecCCCCCCCchhHHHHHhcCC-CCCccccccCCC
Q 026517 106 AAIECAVCLSNLENEE--------------MARVLPNCNHTFHAECIDKWLGSH-STCPICRTGAEP 157 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~--------------~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~CR~~~~~ 157 (237)
....|+||+.++..-. ....+| |.|+||..|+.+|...- ..||.||.++.+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3568999998864321 122446 99999999999999844 489999998854
No 25
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.50 E-value=6.7e-08 Score=66.87 Aligned_cols=30 Identities=40% Similarity=0.927 Sum_probs=27.2
Q ss_pred CCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 128 NCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 128 ~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
.|.|.||..||.+||..+..||++|+....
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 399999999999999999999999987643
No 26
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.48 E-value=3.5e-08 Score=85.84 Aligned_cols=49 Identities=29% Similarity=0.764 Sum_probs=43.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 159 (237)
-..|.||.+.|..+ ..+| |+|.||.-||+..|..+..||.|+.++....
T Consensus 23 lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 45899999999998 6777 9999999999999999999999999886543
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.4e-08 Score=81.71 Aligned_cols=48 Identities=31% Similarity=0.818 Sum_probs=40.4
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHH-HhcCCCC-CccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDK-WLGSHST-CPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~-wl~~~~~-CP~CR~~~~~~ 158 (237)
+..|+||++....+ ..++ |||+||-.||.. |-.++.- ||+||+.+.++
T Consensus 215 d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 215 DYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 56899999998877 7777 999999999999 8665555 99999977554
No 28
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=3.4e-08 Score=83.42 Aligned_cols=51 Identities=35% Similarity=0.810 Sum_probs=42.3
Q ss_pred CCccccccccccCCc-------ceeecCCCCCCCchhHHHHHh--cCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEE-------MARVLPNCNHTFHAECIDKWL--GSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~-------~~~~l~~C~H~fh~~Ci~~wl--~~~~~CP~CR~~~~~~ 158 (237)
+..|+||-..+.... ....|. |+|+||..||+.|. .+.++||.|+..++.+
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 457999998876554 667887 99999999999995 5677999999988654
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.46 E-value=5.9e-08 Score=60.39 Aligned_cols=38 Identities=37% Similarity=0.897 Sum_probs=21.9
Q ss_pred cccccccccCCc-ceeecCCCCCCCchhHHHHHhcCC----CCCc
Q 026517 110 CAVCLSNLENEE-MARVLPNCNHTFHAECIDKWLGSH----STCP 149 (237)
Q Consensus 110 C~IC~~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP 149 (237)
|+||.+ |...+ ...+|+ |||+|+.+||..++..+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 76633 347788 99999999999999643 3576
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.46 E-value=6.5e-08 Score=82.58 Aligned_cols=47 Identities=30% Similarity=0.759 Sum_probs=41.6
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|-||-+.|..+ ..++ |||.||.-||+..|..+..||+||.+...
T Consensus 25 ~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence 45799999999988 5565 99999999999999999999999987643
No 31
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=8e-08 Score=65.93 Aligned_cols=49 Identities=35% Similarity=0.837 Sum_probs=34.9
Q ss_pred CccccccccccCC---------cceeecCCCCCCCchhHHHHHhcC---CCCCccccccCC
Q 026517 108 IECAVCLSNLENE---------EMARVLPNCNHTFHAECIDKWLGS---HSTCPICRTGAE 156 (237)
Q Consensus 108 ~~C~IC~~~~~~~---------~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~CR~~~~ 156 (237)
+.|-||.-.|..- +...++-.|.|.||..||..|+.. +..||+||+...
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3788888877532 111223249999999999999954 346999998753
No 32
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.7e-07 Score=85.80 Aligned_cols=49 Identities=27% Similarity=0.683 Sum_probs=39.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC-----CCCccccccCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH-----STCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-----~~CP~CR~~~~~~~ 159 (237)
+..|+||++....+ ..+. |||+||..||.+.+... ..||+||..|..+.
T Consensus 186 ~~~CPICL~~~~~p---~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcc---cccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 45799999997766 4444 99999999999988544 36999999887643
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.37 E-value=1.5e-07 Score=65.61 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=38.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC-CCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-HSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~~~ 158 (237)
...|+|+.+.|.++ .++| |||.|.+.||..|+.. +.+||+|+.++...
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 56899999999999 6777 9999999999999988 77899999888654
No 34
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.26 E-value=5.3e-07 Score=57.79 Aligned_cols=42 Identities=33% Similarity=0.929 Sum_probs=32.3
Q ss_pred ccccccccccCCcceeecCCCC-----CCCchhHHHHHhcC--CCCCcccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCN-----HTFHAECIDKWLGS--HSTCPICR 152 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~--~~~CP~CR 152 (237)
.|-||++ ...++.....| |. |.+|..||.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3899998 33445556777 85 89999999999954 44799995
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.24 E-value=9.8e-07 Score=77.00 Aligned_cols=52 Identities=25% Similarity=0.565 Sum_probs=37.7
Q ss_pred CCcccccccc-ccCCcc-eeecCCCCCCCchhHHHHHh-cCCCCCccccccCCCCC
Q 026517 107 AIECAVCLSN-LENEEM-ARVLPNCNHTFHAECIDKWL-GSHSTCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~~-~~~~~~-~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~CR~~~~~~~ 159 (237)
+..||+|... +..+.. +.+.+ |||.||..|++..+ .....||.|+.++....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 3479999996 334432 23334 99999999999966 44557999998886554
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.20 E-value=2.4e-07 Score=64.00 Aligned_cols=50 Identities=28% Similarity=0.745 Sum_probs=24.2
Q ss_pred CccccccccccCCc----ceeecCCCCCCCchhHHHHHhcC---C--------CCCccccccCCC
Q 026517 108 IECAVCLSNLENEE----MARVLPNCNHTFHAECIDKWLGS---H--------STCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~~~----~~~~l~~C~H~fh~~Ci~~wl~~---~--------~~CP~CR~~~~~ 157 (237)
.+|.||+..+.... .+.-.+.|++.||..||..||.. . ..||.|+.+|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 47999999865222 22222359999999999999842 1 159999998753
No 37
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.17 E-value=5.2e-07 Score=87.42 Aligned_cols=54 Identities=33% Similarity=0.838 Sum_probs=38.3
Q ss_pred CCCCCCccccccccccC-C--cceeecCCCCCCCchhHHHHHhcCC--CCCccccccCC
Q 026517 103 GLAAAIECAVCLSNLEN-E--EMARVLPNCNHTFHAECIDKWLGSH--STCPICRTGAE 156 (237)
Q Consensus 103 ~~~~~~~C~IC~~~~~~-~--~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~CR~~~~ 156 (237)
.++...+|+||+..+.. . -.-..-++|+|.||..|+-.|+.+. .+||+||..+.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34457899999977641 1 0011223599999999999999654 47999997764
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7.2e-07 Score=76.74 Aligned_cols=42 Identities=31% Similarity=0.943 Sum_probs=38.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCcccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR 152 (237)
...|+||++.|..+ .++| |+|.||..||..++.....||.||
T Consensus 13 ~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 13 ELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 56899999999999 7887 999999999999988555799999
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=9.4e-07 Score=77.75 Aligned_cols=50 Identities=34% Similarity=0.749 Sum_probs=42.2
Q ss_pred CCCCccccccccccCCcceeecCCCCC-CCchhHHHHHhcCCCCCccccccCCCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNH-TFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H-~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
+...+|.||+.+-.+ +.+|| |.| ..|..|-+..-.+++.||+||+++..-
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 346799999998554 48999 999 899999998877888999999998553
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.14 E-value=1.2e-06 Score=78.91 Aligned_cols=54 Identities=35% Similarity=0.889 Sum_probs=41.7
Q ss_pred CCCCCCCCCccccccccccCCcc-eeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 100 QDDGLAAAIECAVCLSNLENEEM-ARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 100 ~~~~~~~~~~C~IC~~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
...+...-++|+|||+.|..... ++... |.|.||..|+..|. ..+||+||.-..
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 34455567899999999987643 34444 99999999999996 478999997554
No 41
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=6.7e-07 Score=57.48 Aligned_cols=46 Identities=26% Similarity=0.630 Sum_probs=35.3
Q ss_pred CCccccccccccCCcceeecCCCCC-CCchhHHHHHhc-CCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNH-TFHAECIDKWLG-SHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H-~fh~~Ci~~wl~-~~~~CP~CR~~~~ 156 (237)
..+|.||++.-.+. .... ||| .+|+.|-.+.++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvds---VlYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYT-CGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHH-cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 35899999985544 3443 999 789999766554 6778999999874
No 42
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.10 E-value=9.5e-07 Score=59.06 Aligned_cols=48 Identities=33% Similarity=0.818 Sum_probs=24.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 159 (237)
-..|++|.+.+..+ ..+..|.|+||..||..-+. ..||+|+.|....+
T Consensus 7 lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 7 LLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp TTS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred hcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 35799999999988 44556999999999988654 34999998875543
No 43
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.4e-06 Score=63.25 Aligned_cols=49 Identities=33% Similarity=0.777 Sum_probs=35.3
Q ss_pred CCcccccccccc-------------CCcceeecCCCCCCCchhHHHHHhcCCCCCccccccC
Q 026517 107 AIECAVCLSNLE-------------NEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~-------------~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~ 155 (237)
...|+||...+- ..+.+..-..|.|.||..||.+||++++.||+|.++.
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 346999976541 1122222224999999999999999999999997654
No 44
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.4e-06 Score=74.81 Aligned_cols=45 Identities=31% Similarity=0.957 Sum_probs=35.4
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCC---CCCcccc
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH---STCPICR 152 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~CR 152 (237)
..|.||.+-+.....+--+..|||+||..|+..|++.. .+||.|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 37999966665555555555699999999999999753 4699998
No 45
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.3e-06 Score=76.58 Aligned_cols=50 Identities=32% Similarity=0.677 Sum_probs=40.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhc-CCCCCccccccCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG-SHSTCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~CR~~~~~~~ 159 (237)
+..|+|||+.+... +..+.|.|-||.+||..-+. .++.||.||+.+..+.
T Consensus 43 ~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 43 QVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 56899999998876 55557999999999988884 4668999999886543
No 46
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.69 E-value=1.5e-05 Score=71.15 Aligned_cols=46 Identities=30% Similarity=0.842 Sum_probs=37.0
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcC--CCCCccccccCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS--HSTCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~CR~~~~~ 157 (237)
.-|-||-+. ...|+.-| |||..|..|+..|-.. .++||.||..|..
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 359999886 44567777 9999999999999844 4589999987743
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.66 E-value=8.6e-06 Score=77.84 Aligned_cols=51 Identities=24% Similarity=0.490 Sum_probs=42.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|++|+..+.........+ |+|.||..||..|-+...+||+||..+...
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 346888888877665555666 999999999999999999999999877543
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.4e-05 Score=76.49 Aligned_cols=48 Identities=25% Similarity=0.747 Sum_probs=37.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhc-CCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG-SHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~CR~~~~~~ 158 (237)
-..|+.|-.....- +++.|+|+||..|+..-+. ++..||.|.+++-+.
T Consensus 643 ~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred ceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 35799999665543 3445999999999999984 566899998887543
No 49
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.5e-05 Score=69.54 Aligned_cols=51 Identities=35% Similarity=0.929 Sum_probs=39.3
Q ss_pred CCccccccccccCCc----ceeecCCCCCCCchhHHHHHh--cC-----CCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEE----MARVLPNCNHTFHAECIDKWL--GS-----HSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~----~~~~l~~C~H~fh~~Ci~~wl--~~-----~~~CP~CR~~~~~ 157 (237)
+..|.||++...... ....+|+|.|.||..||+.|- .+ .+.||.||.....
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 568999999877653 122456799999999999997 33 4679999986643
No 50
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.6e-05 Score=68.86 Aligned_cols=49 Identities=35% Similarity=0.899 Sum_probs=37.6
Q ss_pred CCccccccccccCC-cceeecCCCCCCCchhHHHHHhcC--CCCCccccccC
Q 026517 107 AIECAVCLSNLENE-EMARVLPNCNHTFHAECIDKWLGS--HSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~CR~~~ 155 (237)
...|+||++.+..+ ++....+.|||.|...||+.||.+ ...||.|....
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 56899999998653 455555569999999999999952 22599998533
No 51
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.58 E-value=1.2e-05 Score=69.09 Aligned_cols=49 Identities=27% Similarity=0.757 Sum_probs=41.0
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcC-----------------------CCCCccccccCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-----------------------HSTCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----------------------~~~CP~CR~~~~~ 157 (237)
..|.|||.-|..++...+++ |.|.||..|+.+.|.- ...||+||..|..
T Consensus 116 gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 47999999999999888998 9999999999887631 1259999998843
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=5.8e-05 Score=68.52 Aligned_cols=49 Identities=37% Similarity=0.834 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
..+.+|.||+..+..+ ..+| |||.||..||.+-+....-||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 4578999999999988 6777 99999999999988877789999998854
No 53
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0002 Score=61.91 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=39.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|.||...+..+. ...+|.|-|++.|...|......||.|+..+.+
T Consensus 105 ~~~~~~~~g~l~vpt---~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 105 HDICYICYGKLTVPT---RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred ccceeeeeeeEEecc---cccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 457999999887762 333599999999999999999999999976543
No 54
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0002 Score=61.15 Aligned_cols=49 Identities=29% Similarity=0.552 Sum_probs=37.7
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC--CCCccccccCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH--STCPICRTGAE 156 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~CR~~~~ 156 (237)
..+.+|++|-+.-..| .+..+|+|+||+.||..=+... .+||.|-.++.
T Consensus 237 t~~~~C~~Cg~~PtiP---~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP---HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCC---eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3477999999997777 3332499999999998876543 68999977654
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.25 E-value=0.00013 Score=48.22 Aligned_cols=41 Identities=27% Similarity=0.753 Sum_probs=27.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC--CCCcc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH--STCPI 150 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~ 150 (237)
...|+|.+..|..| ++-. .|||+|-+..|..|+.++ ..||.
T Consensus 11 ~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46899999999988 3333 499999999999999443 35998
No 56
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00053 Score=59.95 Aligned_cols=46 Identities=28% Similarity=0.487 Sum_probs=37.3
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~ 155 (237)
...|++|+.....+ .++..-|-+||+.|+...+...+.||+=..++
T Consensus 300 ~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 300 REVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred cccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 45799999998877 33333799999999999999999999765544
No 57
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.18 E-value=0.00022 Score=72.35 Aligned_cols=66 Identities=29% Similarity=0.614 Sum_probs=47.8
Q ss_pred hCCceeeecCCCCCCCCCCCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----------CCccccccCC
Q 026517 87 ALPIFVYKQTDGGQDDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----------TCPICRTGAE 156 (237)
Q Consensus 87 ~lp~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----------~CP~CR~~~~ 156 (237)
-||-+...+....+ | .+..|.||+.+--.......|. |+|+||..|.++.|++.- +||+|..+|.
T Consensus 3470 CLPCl~Cdks~tkQ-D---~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3470 CLPCLHCDKSATKQ-D---ADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccccccChhhhhc-c---cCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 35655544433322 2 2678999999877667777886 999999999998876531 6999999885
Q ss_pred C
Q 026517 157 P 157 (237)
Q Consensus 157 ~ 157 (237)
.
T Consensus 3545 H 3545 (3738)
T KOG1428|consen 3545 H 3545 (3738)
T ss_pred h
Confidence 3
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.17 E-value=0.00021 Score=65.21 Aligned_cols=49 Identities=31% Similarity=0.756 Sum_probs=41.3
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|++|...+..+ .....|||.||..|+..|+..+..||.|+..+...
T Consensus 21 ~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 21 NLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 56899999999988 22124999999999999999999999998877554
No 59
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.91 E-value=0.00016 Score=63.17 Aligned_cols=46 Identities=33% Similarity=0.679 Sum_probs=39.5
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~ 155 (237)
...|.+|-..|.+...+ +.|-|.||+.||...|.....||.|...+
T Consensus 15 ~itC~LC~GYliDATTI---~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTI---TECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred ceehhhccceeecchhH---HHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 45899999999887333 35999999999999999999999998766
No 60
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.87 E-value=0.00052 Score=63.49 Aligned_cols=54 Identities=28% Similarity=0.675 Sum_probs=39.7
Q ss_pred CCCCCCCCccccccccccCCcceeecCCCCCCCchhHHHHHhc-----CCCCCccccccCCCC
Q 026517 101 DDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG-----SHSTCPICRTGAEPR 158 (237)
Q Consensus 101 ~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~CR~~~~~~ 158 (237)
.+......+|-+|-+.-+.. .... |.|.||+.||..++. .+.+||.|...+.-+
T Consensus 530 ~~enk~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CccccCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 33334567899999986665 4454 999999999988873 245899998766443
No 61
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00034 Score=55.24 Aligned_cols=28 Identities=36% Similarity=0.778 Sum_probs=25.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCch
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHA 135 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~ 135 (237)
.-+|.||||++..++.+..|| |-.+||+
T Consensus 177 kGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 177 KGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred CCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 458999999999999999999 9999986
No 62
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.78 E-value=0.00035 Score=62.34 Aligned_cols=46 Identities=33% Similarity=0.873 Sum_probs=37.9
Q ss_pred CCccccccccccCC-cceeecCCCCCCCchhHHHHHhcCCC--CCccccc
Q 026517 107 AIECAVCLSNLENE-EMARVLPNCNHTFHAECIDKWLGSHS--TCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~CR~ 153 (237)
+..|-.|-+.+-.+ +.+--|| |.|+||..|+...|.++. +||.||.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 46799999988654 4566787 999999999999997665 6999994
No 63
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.70 E-value=0.0008 Score=54.89 Aligned_cols=46 Identities=22% Similarity=0.569 Sum_probs=39.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
...|.||-.+|..+ ++.. |||.||..|...-++....|-.|.....
T Consensus 196 PF~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchhhc
Confidence 45799999999998 5554 9999999999998888889999977543
No 64
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.00041 Score=61.39 Aligned_cols=44 Identities=30% Similarity=0.716 Sum_probs=30.5
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCc-hhHHHHHhcCCCCCccccccCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFH-AECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh-~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
.....|.||+++... ...+| |||+-| ..|-+ ....||+||+.+.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvp-cGh~ccct~cs~----~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVP-CGHVCCCTLCSK----HLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc---eeeec-CCcEEEchHHHh----hCCCCchhHHHHH
Confidence 345679999999665 47888 999644 33322 2345999998774
No 65
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.00031 Score=60.46 Aligned_cols=41 Identities=29% Similarity=0.694 Sum_probs=33.7
Q ss_pred CCccccccccccCCcceeecCCCCC-CCchhHHHHHhcCCCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNH-TFHAECIDKWLGSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H-~fh~~Ci~~wl~~~~~CP~CR~~~ 155 (237)
...|+||++. +..+..|+ ||| +-|.+|-+.. +.||+||+.+
T Consensus 300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKRM----NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcC---CcceEEee-cCcEEeehhhcccc----ccCchHHHHH
Confidence 5679999987 66678998 999 7899997553 4899999865
No 66
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.64 E-value=0.00062 Score=52.42 Aligned_cols=43 Identities=21% Similarity=0.629 Sum_probs=32.4
Q ss_pred CCccccccccccCCcceeecCCCC------CCCchhHHHHHhcCCCCCcc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCN------HTFHAECIDKWLGSHSTCPI 150 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~------H~fh~~Ci~~wl~~~~~CP~ 150 (237)
..+|.||++.+.....+..++ || |.||.+|+++|-..+..=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPf 74 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPF 74 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCc
Confidence 458999999999855666776 76 89999999999543333343
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.63 E-value=0.002 Score=40.79 Aligned_cols=45 Identities=24% Similarity=0.632 Sum_probs=22.4
Q ss_pred cccccccccCCcceeecC-CCCCCCchhHHHHHhc-CCCCCccccccC
Q 026517 110 CAVCLSNLENEEMARVLP-NCNHTFHAECIDKWLG-SHSTCPICRTGA 155 (237)
Q Consensus 110 C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl~-~~~~CP~CR~~~ 155 (237)
|++|.+++...+. ...| .||+.+|..|....+. .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899999843322 2333 3889999999999886 477899999864
No 68
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0025 Score=56.42 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=41.3
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
+++..|+||.-. +......| |+|.-|+.||.+-+.+.+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 346789999876 44446777 99999999999999999999999987764
No 69
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0019 Score=53.69 Aligned_cols=50 Identities=26% Similarity=0.692 Sum_probs=41.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC--------CCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS--------HSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~CR~~~~~~ 158 (237)
...|..|-..+..++.++.. |-|+||.+|+..|-.. ...||.|..+|++.
T Consensus 50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 34699999999999988764 9999999999999632 23699999988653
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.47 E-value=0.00088 Score=49.47 Aligned_cols=31 Identities=39% Similarity=0.854 Sum_probs=26.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHH
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECID 139 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~ 139 (237)
...|++|-..+.. ....+.| |||+||..|++
T Consensus 78 ~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 4579999999987 4566778 99999999975
No 71
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0015 Score=56.44 Aligned_cols=47 Identities=21% Similarity=0.464 Sum_probs=39.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|-||...|..+ ++.. |+|.||..|-..=++....|++|.+.+..
T Consensus 241 Pf~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccccccc---hhhc-CCceeehhhhccccccCCcceeccccccc
Confidence 45699999999998 5554 99999999998888888899999876643
No 72
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.0043 Score=52.33 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=48.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRPQPE 162 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 162 (237)
...|++|.+.+.....+..|.+|||+|+.+|....+.....||+|-.++...+...
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 46799999999988888888779999999999999998999999998887765543
No 73
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.18 E-value=0.0024 Score=55.24 Aligned_cols=43 Identities=40% Similarity=0.821 Sum_probs=36.6
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHh-cCCCCCccccc
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL-GSHSTCPICRT 153 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~CR~ 153 (237)
..|+.|-..+..+ ..+|.|+|.||.+||..-| .....||.|.+
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 6799999998877 5567799999999999776 66778999976
No 74
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0021 Score=57.87 Aligned_cols=46 Identities=22% Similarity=0.694 Sum_probs=37.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC--------CCCCccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS--------HSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~CR~ 153 (237)
-..|.||++...-.+....+| |+|+||+.|++..+.. .-.||-|..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 457999999988778888998 9999999999999742 125877654
No 75
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.10 E-value=0.0031 Score=40.91 Aligned_cols=45 Identities=29% Similarity=0.527 Sum_probs=33.4
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
..|..|...-..+ .++| |||+.+..|...+ +-+-||+|.+++...
T Consensus 8 ~~~~~~~~~~~~~---~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGTKG---TVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccccccc---cccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 3576776654444 6787 9999999998764 446799999988654
No 76
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.09 E-value=0.0031 Score=39.89 Aligned_cols=40 Identities=33% Similarity=1.038 Sum_probs=26.0
Q ss_pred cccccccccCCcceeecCCCC-----CCCchhHHHHHhc--CCCCCccc
Q 026517 110 CAVCLSNLENEEMARVLPNCN-----HTFHAECIDKWLG--SHSTCPIC 151 (237)
Q Consensus 110 C~IC~~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~--~~~~CP~C 151 (237)
|-||++.-.... ....| |+ -..|..||..|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 668888876654 23455 65 3789999999996 44579887
No 77
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.08 E-value=0.009 Score=51.58 Aligned_cols=53 Identities=15% Similarity=0.375 Sum_probs=42.3
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
.....|||...+|........+-+|||+|...+|+..- ....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 34789999999997666666664599999999999973 356799999988654
No 78
>PHA02862 5L protein; Provisional
Probab=95.98 E-value=0.0047 Score=48.00 Aligned_cols=45 Identities=20% Similarity=0.577 Sum_probs=33.5
Q ss_pred CccccccccccCCcceeecCCCC-----CCCchhHHHHHhcC--CCCCccccccCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCN-----HTFHAECIDKWLGS--HSTCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~--~~~CP~CR~~~~~ 157 (237)
..|=||.++-.+. .-| |+ ..-|..|+.+|+.. +..|++|+.+...
T Consensus 3 diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4799999985443 344 64 47899999999954 3469999987744
No 79
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.80 E-value=0.0068 Score=53.55 Aligned_cols=48 Identities=27% Similarity=0.703 Sum_probs=38.2
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHH--hcCCCCCccccccCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKW--LGSHSTCPICRTGAEP 157 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w--l~~~~~CP~CR~~~~~ 157 (237)
....|.||.+.+.-- .++| |+|..|--|-.+. |..++.||+||.....
T Consensus 60 en~~C~ICA~~~TYs---~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 60 ENMNCQICAGSTTYS---ARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred ccceeEEecCCceEE---Eecc-CCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 467899999987654 6788 9999999997654 6778899999986543
No 80
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.64 E-value=0.0041 Score=52.37 Aligned_cols=45 Identities=20% Similarity=0.592 Sum_probs=32.1
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
.|--|..--. ++...++. |+|+||..|...-.. ..||+|+.++..
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~~--~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASSP--DVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCCc--cccccccceeee
Confidence 4666655444 66677765 999999999865322 289999998743
No 81
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.64 E-value=0.014 Score=46.20 Aligned_cols=48 Identities=23% Similarity=0.658 Sum_probs=34.3
Q ss_pred CCCccccccccccCCcceeecCCCC--C---CCchhHHHHHhcCC--CCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCN--H---TFHAECIDKWLGSH--STCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~--H---~fh~~Ci~~wl~~~--~~CP~CR~~~~~~ 158 (237)
.+..|=||.++.... ..| |. . .-|.+|+..|+... ..|++|+.+....
T Consensus 7 ~~~~CRIC~~~~~~~----~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYDVV----TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCCCc----cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 356899999885421 235 54 4 55999999999544 4699999877443
No 82
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.01 Score=52.00 Aligned_cols=48 Identities=38% Similarity=0.850 Sum_probs=37.2
Q ss_pred CCccccccccccCC--cce-eecCCCCCCCchhHHHHHhcCCC-CCccccccC
Q 026517 107 AIECAVCLSNLENE--EMA-RVLPNCNHTFHAECIDKWLGSHS-TCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~--~~~-~~l~~C~H~fh~~Ci~~wl~~~~-~CP~CR~~~ 155 (237)
...|-||-++|... +.+ +.| .|||.||..|+...+.... .||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 35799999999876 333 444 4999999999988775444 699999985
No 83
>PHA03096 p28-like protein; Provisional
Probab=95.43 E-value=0.0069 Score=52.86 Aligned_cols=45 Identities=29% Similarity=0.667 Sum_probs=32.0
Q ss_pred ccccccccccCC----cceeecCCCCCCCchhHHHHHhcC---CCCCccccc
Q 026517 109 ECAVCLSNLENE----EMARVLPNCNHTFHAECIDKWLGS---HSTCPICRT 153 (237)
Q Consensus 109 ~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~CR~ 153 (237)
.|.||++..... ..--.|+.|.|.||..|+..|-.. ..+||.||.
T Consensus 180 ~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 180 ICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 699999986543 123367789999999999999743 224555544
No 84
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.0068 Score=52.78 Aligned_cols=44 Identities=30% Similarity=0.680 Sum_probs=31.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~ 155 (237)
.-.|.-|--. ...--+++| |+|+||.+|-.. ...+.||.|-..+
T Consensus 90 VHfCd~Cd~P--I~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFP--IAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCc--ceeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 3467777433 333457888 999999999754 4567899997654
No 85
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.23 E-value=0.011 Score=36.64 Aligned_cols=41 Identities=27% Similarity=0.759 Sum_probs=24.1
Q ss_pred cccccccccCCcceeecCCCCCCCchhHHHHHhcCCC--CCccc
Q 026517 110 CAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS--TCPIC 151 (237)
Q Consensus 110 C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~C 151 (237)
|.+|.+....+...... .|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888887777544433 3888999999999997655 79987
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.0084 Score=58.50 Aligned_cols=43 Identities=23% Similarity=0.711 Sum_probs=33.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~ 155 (237)
...|.+|-..+..| ..... |||.||.+|+. .....||-|+...
T Consensus 840 ~skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccchhh
Confidence 35799999998877 34444 99999999997 4556799998733
No 87
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.97 E-value=0.011 Score=57.69 Aligned_cols=49 Identities=31% Similarity=0.777 Sum_probs=36.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC-------CCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH-------STCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-------~~CP~CR~~~ 155 (237)
..+|.||.+.+.....+---..|=|+||..||..|-.+. -.||.|....
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 578999999987665544333477999999999997432 1599998433
No 88
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.0021 Score=57.48 Aligned_cols=49 Identities=22% Similarity=0.615 Sum_probs=42.2
Q ss_pred CCccccccccccCC-cceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENE-EMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
...|+||.+.+... +.+..+- |||.+|.+||..||.....||.||+.++
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 45799999999876 5666675 9999999999999998888999998774
No 89
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.32 E-value=0.018 Score=56.11 Aligned_cols=49 Identities=24% Similarity=0.605 Sum_probs=37.4
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC--CCccccccCCCCCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS--TCPICRTGAEPRPQP 161 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~CR~~~~~~~~~ 161 (237)
..|.||++ .+.+...+ |+|.||..|+..-+.... .||+||..+......
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 57999999 33445665 999999999999885433 599999988665443
No 90
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=93.72 E-value=0.15 Score=30.44 Aligned_cols=29 Identities=10% Similarity=0.371 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026517 20 IMVTAIISLTIVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i~~~~~~~~~~~r~ 48 (237)
.+.+++.+++++.++++.+++|..|++|.
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34444444445555555555555555443
No 91
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.042 Score=44.32 Aligned_cols=31 Identities=29% Similarity=0.913 Sum_probs=24.6
Q ss_pred CCCCCCchhHHHHHhcC-----C------CCCccccccCCCC
Q 026517 128 NCNHTFHAECIDKWLGS-----H------STCPICRTGAEPR 158 (237)
Q Consensus 128 ~C~H~fh~~Ci~~wl~~-----~------~~CP~CR~~~~~~ 158 (237)
.||.-||.-|+..||+. + ..||+|-.++..+
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 49999999999999953 1 2599998887544
No 92
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.35 E-value=0.049 Score=47.23 Aligned_cols=45 Identities=33% Similarity=0.739 Sum_probs=36.4
Q ss_pred CccccccccccCCcc-eeecCCCCCCCchhHHHHHhcCCCCCccccc
Q 026517 108 IECAVCLSNLENEEM-ARVLPNCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
..|+||.+.+..... +..++ |||..|..|+......+.+||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 349999998765543 34565 9999999999998877789999988
No 93
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.31 E-value=0.056 Score=42.80 Aligned_cols=52 Identities=23% Similarity=0.676 Sum_probs=33.4
Q ss_pred CCccccccccccCCcceeecC------C-----CCC-CCchhHHHHHhcC------------------------------
Q 026517 107 AIECAVCLSNLENEEMARVLP------N-----CNH-TFHAECIDKWLGS------------------------------ 144 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~------~-----C~H-~fh~~Ci~~wl~~------------------------------ 144 (237)
+..|+|||+.-... ++|. + |+. .-|..||++..+.
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ 78 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence 45799999974332 3332 1 443 3468899988521
Q ss_pred -CCCCccccccCCCCCCC
Q 026517 145 -HSTCPICRTGAEPRPQP 161 (237)
Q Consensus 145 -~~~CP~CR~~~~~~~~~ 161 (237)
+..||+||..|..+...
T Consensus 79 ~~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 79 PELACPLCRGEVKGWTVV 96 (162)
T ss_pred ccccCccccCceeceEEc
Confidence 12599999999776544
No 94
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=0.039 Score=54.29 Aligned_cols=34 Identities=29% Similarity=0.630 Sum_probs=27.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHh
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL 142 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 142 (237)
...|.+|...+... .-.+.| |||.||.+||..-.
T Consensus 817 ~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred ccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 45799999887754 445667 99999999998764
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.80 E-value=0.076 Score=46.98 Aligned_cols=50 Identities=16% Similarity=0.434 Sum_probs=34.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC-CCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-HSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~ 156 (237)
+..|+.|+++|...+.-..--.||.-.|.-|....-+. +..||-||+...
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 34599999999876654332238887788887665432 557999998654
No 96
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.047 Score=45.57 Aligned_cols=41 Identities=32% Similarity=0.761 Sum_probs=30.9
Q ss_pred cccccccccCCcceeecCCCCC-CCchhHHHHHhcCCCCCccccccCCCC
Q 026517 110 CAVCLSNLENEEMARVLPNCNH-TFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 110 C~IC~~~~~~~~~~~~l~~C~H-~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
|-.|.+. ...|..+| |.| ++|..|=.. -..||+|+.+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s~ 202 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTSS 202 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhce
Confidence 7777665 66688998 998 899999643 35699998876543
No 97
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.73 E-value=0.14 Score=33.23 Aligned_cols=40 Identities=25% Similarity=0.669 Sum_probs=33.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCcc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPI 150 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~ 150 (237)
...|++|-+.|..++.+.+-|.||-.+|+.|... ...|-+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 4579999999998888888888999999999755 456655
No 98
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.34 E-value=0.082 Score=46.54 Aligned_cols=42 Identities=29% Similarity=0.772 Sum_probs=33.5
Q ss_pred CCccccccccccCCcceeecCCC--CCCCchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNC--NHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C--~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
-.+||||.+.+..+ ... | ||+.|..|-.. ....||.||.++.
T Consensus 48 lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCccc----cee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence 56899999999988 333 6 69999999753 3567999998874
No 99
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=0.45 Score=43.05 Aligned_cols=44 Identities=20% Similarity=0.514 Sum_probs=37.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC---CCCccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH---STCPIC 151 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~C 151 (237)
...|||=.+.-.+......|. |||+..++-|.+.-+.. ..||+|
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 678999988888777778998 99999999999976543 369999
No 100
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=0.16 Score=44.02 Aligned_cols=47 Identities=21% Similarity=0.643 Sum_probs=34.1
Q ss_pred cccccccc-ccCCcceeecCCCCCCCchhHHHHHhcC-CCCCccccccC
Q 026517 109 ECAVCLSN-LENEEMARVLPNCNHTFHAECIDKWLGS-HSTCPICRTGA 155 (237)
Q Consensus 109 ~C~IC~~~-~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~ 155 (237)
.|++|..+ |..++...+...|+|..|..|.+..+.. ...||-|-..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 48888865 3444443333349999999999999854 45799997755
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.11 E-value=0.076 Score=33.36 Aligned_cols=30 Identities=27% Similarity=0.729 Sum_probs=21.8
Q ss_pred CC-CCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 129 CN-HTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 129 C~-H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
|. |..|..|+...|.+...||+|..+++..
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 76 9999999999999999999999888543
No 102
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.95 E-value=0.13 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.806 Sum_probs=22.1
Q ss_pred ecCCCCCCCchhHHHHHhcCCCCCcc
Q 026517 125 VLPNCNHTFHAECIDKWLGSHSTCPI 150 (237)
Q Consensus 125 ~l~~C~H~fh~~Ci~~wl~~~~~CP~ 150 (237)
... |+|+.|..|...|+.....||.
T Consensus 1045 Cg~-C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGT-CGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hcc-ccccccHHHHHHHHhcCCcCCC
Confidence 444 9999999999999999999985
No 103
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.79 E-value=0.065 Score=54.76 Aligned_cols=44 Identities=34% Similarity=0.847 Sum_probs=36.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
...|.||++.+...-. .. .|||.+|..|...|+..+..||.|..
T Consensus 1153 ~~~c~ic~dil~~~~~--I~-~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGG--IA-GCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred ccchHHHHHHHHhcCC--ee-eechhHhhhHHHHHHHHhccCcchhh
Confidence 4579999999884322 23 39999999999999999999999984
No 104
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=90.12 E-value=0.15 Score=45.91 Aligned_cols=29 Identities=34% Similarity=0.897 Sum_probs=21.4
Q ss_pred CCCCCchhHHHHHhcC-------------CCCCccccccCCC
Q 026517 129 CNHTFHAECIDKWLGS-------------HSTCPICRTGAEP 157 (237)
Q Consensus 129 C~H~fh~~Ci~~wl~~-------------~~~CP~CR~~~~~ 157 (237)
|....|.+|+-+|+-. +-.||+||+.+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4456678999999832 2269999998754
No 105
>PHA02650 hypothetical protein; Provisional
Probab=89.74 E-value=0.98 Score=31.47 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 18 SKIMVTAIISLTIVIVVVLLLHIYARCVLR 47 (237)
Q Consensus 18 ~~~~ii~i~~l~~vi~~i~~~~~~~~~~~r 47 (237)
+..+.++++++++++++++++++|.+...|
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYLK~~~r 75 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVFKGYTR 75 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444466666667777777766554
No 106
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=89.34 E-value=0.1 Score=50.47 Aligned_cols=49 Identities=31% Similarity=0.870 Sum_probs=38.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC---CCccccccCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS---TCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~---~CP~CR~~~~~~~ 159 (237)
..+|+||+..+..+ ..+ .|.|.|+..|+..-|...+ .||+|+..+.-..
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS 72 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence 45899999999988 445 4999999999988775544 5999997665443
No 107
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=0.21 Score=45.55 Aligned_cols=38 Identities=26% Similarity=0.712 Sum_probs=27.8
Q ss_pred CCccccccccccCC-cceeecCCCCCCCchhHHHHHhcCC
Q 026517 107 AIECAVCLSNLENE-EMARVLPNCNHTFHAECIDKWLGSH 145 (237)
Q Consensus 107 ~~~C~IC~~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~~~ 145 (237)
..+|.||+.+.... ...... .|+|.||.+|+++.++.+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhhh
Confidence 45899999554444 444444 499999999999888643
No 108
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.89 E-value=0.19 Score=42.88 Aligned_cols=49 Identities=29% Similarity=0.788 Sum_probs=33.8
Q ss_pred CCCccccccccccCCcce-eecCCCC-----CCCchhHHHHHhcCC--------CCCccccccC
Q 026517 106 AAIECAVCLSNLENEEMA-RVLPNCN-----HTFHAECIDKWLGSH--------STCPICRTGA 155 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~-~~l~~C~-----H~fh~~Ci~~wl~~~--------~~CP~CR~~~ 155 (237)
.+..|=||+..-++.... -+-| |. |-.|..||..|+..+ .+||-|++..
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 356899999876554322 2333 53 789999999998321 2599999755
No 109
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.62 E-value=0.37 Score=37.10 Aligned_cols=52 Identities=19% Similarity=0.506 Sum_probs=36.6
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhc---CCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG---SHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~CR~~~~~~ 158 (237)
-.+|.||.+...+..-+.--..||-..|..|....++ ....||.|+.++...
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4689999998766522222224999999998876553 345799999988654
No 110
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=87.52 E-value=1 Score=34.43 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=9.9
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 026517 11 KNPYSLNSKIMVTAIISLTIVIVVVLLL 38 (237)
Q Consensus 11 ~~~~~~~~~~~ii~i~~l~~vi~~i~~~ 38 (237)
...|+..- +..|++.+++.++++++++
T Consensus 58 ~h~fs~~~-i~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 58 VHRFSEPA-IIGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp SSSSS-TC-HHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccc-eeehhHHHHHHHHHHHHHH
Confidence 34444332 2333333344444444333
No 111
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=87.01 E-value=0.32 Score=44.59 Aligned_cols=33 Identities=30% Similarity=0.687 Sum_probs=28.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG 143 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 143 (237)
+..|+||..-|.++ +.|| |+|..|..|...-+.
T Consensus 4 elkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 4 ELKCPVCGSFYREP---IILP-CSHNLCQACARNILV 36 (699)
T ss_pred cccCceehhhccCc---eEee-cccHHHHHHHHhhcc
Confidence 56799999999998 8888 999999999876553
No 112
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=86.98 E-value=0.74 Score=27.92 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026517 28 LTIVIVVVLLLHIYARCVLRRQ 49 (237)
Q Consensus 28 l~~vi~~i~~~~~~~~~~~r~~ 49 (237)
+.++.+.++..++|.+|..|++
T Consensus 17 Vglv~i~iva~~iYRKw~aRkr 38 (43)
T PF08114_consen 17 VGLVGIGIVALFIYRKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555667777766554
No 113
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.82 E-value=0.27 Score=42.77 Aligned_cols=30 Identities=23% Similarity=0.620 Sum_probs=23.1
Q ss_pred CCCCCchhHHHHHhc-------------CCCCCccccccCCCC
Q 026517 129 CNHTFHAECIDKWLG-------------SHSTCPICRTGAEPR 158 (237)
Q Consensus 129 C~H~fh~~Ci~~wl~-------------~~~~CP~CR~~~~~~ 158 (237)
|....|.+|+.+|+. ++-+||+||+.+.-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 667888999999973 234799999987543
No 114
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.18 E-value=0.24 Score=41.91 Aligned_cols=47 Identities=28% Similarity=0.673 Sum_probs=34.3
Q ss_pred CCccccccccc-cCCc-ceeecCCCCCCCchhHHHHHhcCCC-CCc--cccc
Q 026517 107 AIECAVCLSNL-ENEE-MARVLPNCNHTFHAECIDKWLGSHS-TCP--ICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~-~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP--~CR~ 153 (237)
+..||||..+- -.|+ .+.+-|.|-|.+|..|+++.+.... .|| -|-.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 44799999763 3333 4445556999999999999996655 699 6754
No 115
>PHA02844 putative transmembrane protein; Provisional
Probab=86.03 E-value=1.7 Score=29.96 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIVIVVVLLLHIYARCV 45 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i~~~~~~~~~~ 45 (237)
.+..+++.+++++++++++++|.+..
T Consensus 47 ~~~~~ii~i~~v~~~~~~~flYLK~~ 72 (75)
T PHA02844 47 STKIWILTIIFVVFATFLTFLYLKAV 72 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 33333344555556666666666543
No 116
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=85.95 E-value=1.3 Score=38.99 Aligned_cols=13 Identities=8% Similarity=0.511 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 026517 32 IVVVLLLHIYARC 44 (237)
Q Consensus 32 i~~i~~~~~~~~~ 44 (237)
++++++++++.|+
T Consensus 269 VLIMvIIYLILRY 281 (299)
T PF02009_consen 269 VLIMVIIYLILRY 281 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333343
No 117
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.75 E-value=1.3 Score=37.77 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=41.2
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
.....|+|---+|........+-.|||+|-..-++..- ..+|++|.+.+...
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQED 160 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCccccc
Confidence 44678999988888776666666699999999888754 56899999987654
No 118
>PF15102 TMEM154: TMEM154 protein family
Probab=83.41 E-value=0.23 Score=38.89 Aligned_cols=8 Identities=50% Similarity=1.194 Sum_probs=4.0
Q ss_pred hHHHHHhc
Q 026517 136 ECIDKWLG 143 (237)
Q Consensus 136 ~Ci~~wl~ 143 (237)
.=|++|..
T Consensus 128 eeldkwm~ 135 (146)
T PF15102_consen 128 EELDKWMN 135 (146)
T ss_pred HHHHhHHH
Confidence 34555653
No 119
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=82.43 E-value=2.5 Score=27.56 Aligned_cols=47 Identities=28% Similarity=0.661 Sum_probs=33.8
Q ss_pred CccccccccccCCcceeecCCCCC--CCchhHHHHHhcCCCCCccccccCCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNH--TFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H--~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
..|-.|-.++.....-..+ |.+ .||..|.+..| +..||.|-..+...
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 4588888887765422222 664 89999999987 57899998877544
No 120
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=81.82 E-value=0.46 Score=45.42 Aligned_cols=43 Identities=28% Similarity=0.782 Sum_probs=26.9
Q ss_pred CCcccccccc-----ccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccc
Q 026517 107 AIECAVCLSN-----LENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~-----~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
...|.+|... |......+... |+++||..|+.. .+..||.|-+
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~-C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCST-CLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHH-HHHHHHHHHHhc---cCCCCCchHH
Confidence 4678888322 32222334444 999999999765 3344999943
No 121
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=81.48 E-value=0.96 Score=36.62 Aligned_cols=6 Identities=33% Similarity=0.788 Sum_probs=2.7
Q ss_pred HHHHHh
Q 026517 43 RCVLRR 48 (237)
Q Consensus 43 ~~~~r~ 48 (237)
++++.+
T Consensus 102 ~c~~~K 107 (179)
T PF13908_consen 102 CCCLYK 107 (179)
T ss_pred cccccc
Confidence 444444
No 122
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=81.14 E-value=1.3 Score=28.15 Aligned_cols=43 Identities=26% Similarity=0.636 Sum_probs=20.7
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCC-----CCCcccccc
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH-----STCPICRTG 154 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-----~~CP~CR~~ 154 (237)
..|+|....+..| ++.. .|.|.-|++ +..||..+ -.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~-~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGK-NCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEET-T--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCC-cCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4699999888877 4444 499976654 34555322 259999764
No 123
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.96 E-value=1 Score=43.10 Aligned_cols=47 Identities=36% Similarity=0.836 Sum_probs=37.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRPQP 161 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 161 (237)
...|.||+.++ ..+..+ |. |..|+..|+..+..||+|+..+......
T Consensus 479 ~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFL 525 (543)
T ss_pred cCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccccc
Confidence 45799999998 235555 88 8999999999999999999887665433
No 124
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.46 E-value=0.56 Score=45.02 Aligned_cols=44 Identities=23% Similarity=0.657 Sum_probs=31.4
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
...|.||+..|......-+-+.|||..|..|+..-. +.+|| |..
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 347999988886654333334599999999997754 56788 543
No 125
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.32 E-value=1 Score=39.39 Aligned_cols=50 Identities=26% Similarity=0.649 Sum_probs=35.2
Q ss_pred CCccccccccccCCcc-eeecCCCC-----CCCchhHHHHHhc--CCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEM-ARVLPNCN-----HTFHAECIDKWLG--SHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~-~~~l~~C~-----H~fh~~Ci~~wl~--~~~~CP~CR~~~~~ 157 (237)
...|=||..+...... ....| |. +..|..|+..|+. .+..|..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4679999997654321 23444 54 5779999999996 45579999876543
No 126
>PHA02819 hypothetical protein; Provisional
Probab=79.21 E-value=6.7 Score=26.75 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 18 SKIMVTAIISLTIVIVVVLLLHIYAR 43 (237)
Q Consensus 18 ~~~~ii~i~~l~~vi~~i~~~~~~~~ 43 (237)
+..+.++++.+++++++++++++|.+
T Consensus 43 ~~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555556566554
No 127
>PF15050 SCIMP: SCIMP protein
Probab=79.17 E-value=4.5 Score=30.61 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026517 32 IVVVLLLHIYARCVLR 47 (237)
Q Consensus 32 i~~i~~~~~~~~~~~r 47 (237)
+++.++++.+.|+.+|
T Consensus 21 ~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 21 VVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 128
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=78.57 E-value=1.7 Score=27.84 Aligned_cols=41 Identities=24% Similarity=0.694 Sum_probs=21.6
Q ss_pred cccccccccCCc------ceeecCCCCCCCchhHHHHHh-cCCCCCccc
Q 026517 110 CAVCLSNLENEE------MARVLPNCNHTFHAECIDKWL-GSHSTCPIC 151 (237)
Q Consensus 110 C~IC~~~~~~~~------~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~C 151 (237)
|.-|+..|..+. ....-|.|++.||.+| +..+ +.-.+||-|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC 49 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGC 49 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCC
Confidence 555666666542 3455567999999999 3333 444579988
No 129
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=77.93 E-value=4.4 Score=30.93 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=21.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026517 12 NPYSLNSKIMVTAIISLTIVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 12 ~~~~~~~~~~ii~i~~l~~vi~~i~~~~~~~~~~~r~ 48 (237)
.+....+..-.++.+++.++..++++++++..+++|+
T Consensus 55 ~ql~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 55 SQLVHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp -SSSSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777776666666666665555544443
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.81 E-value=1.7 Score=42.52 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=29.6
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCcc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPI 150 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~ 150 (237)
.|.+|-..+. +..+.. +.|||.-|..|+..|+..+.-||.
T Consensus 781 ~CtVC~~vi~-G~~~~c-~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWC-QVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceee-eeEeec-ccccccccHHHHHHHHhcCCCCcc
Confidence 5888865543 222223 359999999999999998888876
No 131
>PHA03054 IMV membrane protein; Provisional
Probab=77.67 E-value=7 Score=26.67 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 19 KIMVTAIISLTIVIVVVLLLHIYAR 43 (237)
Q Consensus 19 ~~~ii~i~~l~~vi~~i~~~~~~~~ 43 (237)
..+.++++.+++++++++++++|.+
T Consensus 46 ~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 46 WGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555555555544
No 132
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.46 E-value=1.4 Score=43.50 Aligned_cols=50 Identities=22% Similarity=0.621 Sum_probs=37.2
Q ss_pred CCccccccccccCCcceeecCCCC-----CCCchhHHHHHhcCCC--CCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCN-----HTFHAECIDKWLGSHS--TCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~~~--~CP~CR~~~~~~ 158 (237)
+..|-||..+=..++.+.. | |+ -..|.+|+..|+.-.. .|-+|+.++.-+
T Consensus 12 ~~~CRICr~e~~~d~pLfh-P-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFH-P-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred chhceeecCCCCCCCcCcc-c-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 4689999988766655543 3 55 3679999999996443 599999988554
No 133
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=77.46 E-value=1.8 Score=35.92 Aligned_cols=41 Identities=27% Similarity=0.811 Sum_probs=27.7
Q ss_pred CCcccccccc-----ccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccc
Q 026517 107 AIECAVCLSN-----LENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~-----~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
+..|.+|-.. |... .+..-+.|+-+||..|.. ...||-|-+
T Consensus 152 GfiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4578888753 3332 333444599999999975 267999954
No 134
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=77.45 E-value=6.4 Score=27.06 Aligned_cols=13 Identities=38% Similarity=0.840 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 026517 30 IVIVVVLLLHIYA 42 (237)
Q Consensus 30 ~vi~~i~~~~~~~ 42 (237)
+++++++++++|.
T Consensus 57 ~v~ii~~l~flYL 69 (72)
T PF12575_consen 57 FVLIIVLLTFLYL 69 (72)
T ss_pred HHHHHHHHHHHHh
Confidence 3333333344443
No 135
>PTZ00370 STEVOR; Provisional
Probab=76.28 E-value=3.8 Score=35.76 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026517 26 ISLTIVIVVVLLLHIYARCVLRRQARR 52 (237)
Q Consensus 26 ~~l~~vi~~i~~~~~~~~~~~r~~~~r 52 (237)
+.++++++.++++++|++.++||..-|
T Consensus 260 aalvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 260 AALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 334445555555556665555554443
No 136
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.96 E-value=1.9 Score=42.54 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=36.0
Q ss_pred CCccccccccccCCc---ceeecCCCCCCCchhHHHHHhcC------CCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEE---MARVLPNCNHTFHAECIDKWLGS------HSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~---~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~CR~~~~~~ 158 (237)
...|.+|..++..++ .+..+..|+|.||..||..|+.+ .-.|++|..-|..+
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 456778877777632 22233359999999999999843 22589998877554
No 137
>smart00678 WWE Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis.
Probab=75.86 E-value=0.88 Score=31.06 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=20.6
Q ss_pred cccccccCCcccCCcccccchhhhh
Q 026517 211 SFRRILNGDWDRSSRRIQFEIADLE 235 (237)
Q Consensus 211 ~~~~~~~~~w~r~~~r~~~~~~~~~ 235 (237)
|.+...+|+|+.|++..+..||+.-
T Consensus 3 W~w~~~~g~W~~Y~~~~~~~IE~ay 27 (73)
T smart00678 3 WEYEGRNGKWWPYDPRVSEDIEEAY 27 (73)
T ss_pred EEEECCCCCeeeCChHHHHHHHHHH
Confidence 7777778889999999888888753
No 138
>PHA02975 hypothetical protein; Provisional
Probab=75.50 E-value=9.8 Score=25.81 Aligned_cols=16 Identities=6% Similarity=0.488 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026517 28 LTIVIVVVLLLHIYAR 43 (237)
Q Consensus 28 l~~vi~~i~~~~~~~~ 43 (237)
+++++++++++++|.+
T Consensus 51 i~~v~~~~~~~flYLK 66 (69)
T PHA02975 51 IIFITCIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555555554
No 139
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=75.25 E-value=16 Score=27.38 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=16.1
Q ss_pred HHhcCCCCCccccccCCCCCCCC
Q 026517 140 KWLGSHSTCPICRTGAEPRPQPE 162 (237)
Q Consensus 140 ~wl~~~~~CP~CR~~~~~~~~~~ 162 (237)
..+.+...|+.|++++..++..+
T Consensus 80 KmLGr~D~CM~C~~pLTLd~~le 102 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDPSLE 102 (114)
T ss_pred hhhchhhccCcCCCcCccCchhh
Confidence 34455668999999997765443
No 140
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=74.74 E-value=7.4 Score=27.47 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=15.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHH
Q 026517 12 NPYSLNSKIMVTAIISLTIVIVVVLL 37 (237)
Q Consensus 12 ~~~~~~~~~~ii~i~~l~~vi~~i~~ 37 (237)
+...+....++.++++++++++++++
T Consensus 18 ~~~~l~pn~lMtILivLVIIiLlIml 43 (85)
T PF10717_consen 18 NLNGLNPNTLMTILIVLVIIILLIML 43 (85)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHH
Confidence 34456777777776655554444433
No 141
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=74.52 E-value=2.2 Score=35.59 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=15.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 16 LNSKIMVTAIISLTIVIVVVLLLHIYARCVL 46 (237)
Q Consensus 16 ~~~~~~ii~i~~l~~vi~~i~~~~~~~~~~~ 46 (237)
-...+|+.+|..++.|++++++.. ++|+++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v-~vR~CR 64 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVV-LVRYCR 64 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHH-HHHHHh
Confidence 445566666655555555444444 444333
No 142
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=73.80 E-value=7.8 Score=30.42 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=7.5
Q ss_pred CCchhHHHHHHHHHHHH
Q 026517 15 SLNSKIMVTAIISLTIV 31 (237)
Q Consensus 15 ~~~~~~~ii~i~~l~~v 31 (237)
++...-++++++.++++
T Consensus 25 sffsthm~tILiaIvVl 41 (189)
T PF05568_consen 25 SFFSTHMYTILIAIVVL 41 (189)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34444455544433333
No 143
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=73.74 E-value=1.8 Score=36.09 Aligned_cols=43 Identities=28% Similarity=0.713 Sum_probs=34.7
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccc
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
..|.+|......+ ++.- .|+--+|..|+...+++...||.|.-
T Consensus 182 k~Cn~Ch~LvIqg--~rCg-~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCG-SCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhhee--eccC-cccchhhhHHHHHHhcccCcCCchhc
Confidence 4699999987776 2223 38888999999999999889999943
No 144
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=73.66 E-value=5.7 Score=28.37 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=2.3
Q ss_pred HHHHHh
Q 026517 43 RCVLRR 48 (237)
Q Consensus 43 ~~~~r~ 48 (237)
+|..|+
T Consensus 54 CC~kRk 59 (94)
T PF05393_consen 54 CCKKRK 59 (94)
T ss_pred HHHHhh
Confidence 333333
No 145
>PTZ00046 rifin; Provisional
Probab=72.25 E-value=4.9 Score=36.25 Aligned_cols=9 Identities=11% Similarity=0.382 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 026517 36 LLLHIYARC 44 (237)
Q Consensus 36 ~~~~~~~~~ 44 (237)
++++++.|+
T Consensus 332 vIIYLILRY 340 (358)
T PTZ00046 332 VIIYLILRY 340 (358)
T ss_pred HHHHHHHHh
Confidence 333333343
No 146
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=72.14 E-value=5.4 Score=35.91 Aligned_cols=9 Identities=11% Similarity=0.382 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 026517 36 LLLHIYARC 44 (237)
Q Consensus 36 ~~~~~~~~~ 44 (237)
++++++.|+
T Consensus 327 vIIYLILRY 335 (353)
T TIGR01477 327 VIIYLILRY 335 (353)
T ss_pred HHHHHHHHh
Confidence 333333343
No 147
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=70.02 E-value=3.6 Score=36.48 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=32.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCcccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICR 152 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR 152 (237)
...|-.|.+........+.-. |.|.||.+|=.-.-++-..||-|-
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcC
Confidence 446999988777665555554 999999999433324445799995
No 148
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=69.90 E-value=5.4 Score=35.47 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=35.5
Q ss_pred CCccccccccccCCcceeecC-CCCCCCchhHHHHHhcCCCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLP-NCNHTFHAECIDKWLGSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl~~~~~CP~CR~~~ 155 (237)
...|+||.+.+...+.. .+| +|+|..|..|+..-...+..||.||.+.
T Consensus 249 ~~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCcc
Confidence 36899999987444322 233 3888888888888888889999999544
No 149
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=69.84 E-value=3 Score=22.77 Aligned_cols=23 Identities=26% Similarity=0.732 Sum_probs=12.0
Q ss_pred ccccccccccCCcceeecCCCCCCC
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTF 133 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~f 133 (237)
.|+-|...+... ...-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 366666665433 22334477766
No 150
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=69.72 E-value=7.2 Score=32.86 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 19 KIMVTAIISLTIVIVVVLLLHIYARCVLR 47 (237)
Q Consensus 19 ~~~ii~i~~l~~vi~~i~~~~~~~~~~~r 47 (237)
.++.++|+++++.+++++++-+|+.|+..
T Consensus 189 vilpvvIaliVitl~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 189 VILPVVIALIVITLSVFTLVGLYRMCWKT 217 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33334444444444455555555555444
No 151
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=69.63 E-value=9.9 Score=30.51 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026517 20 IMVTAIISLTIVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i~~~~~~~~~~~r~ 48 (237)
.+.-.+.+++++..+++++|+++.+..|+
T Consensus 93 ~l~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 93 MLKRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333333334444444444333343
No 152
>PRK01844 hypothetical protein; Provisional
Probab=69.38 E-value=23 Score=24.34 Aligned_cols=12 Identities=17% Similarity=-0.034 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhh
Q 026517 38 LHIYARCVLRRQ 49 (237)
Q Consensus 38 ~~~~~~~~~r~~ 49 (237)
-|++.|.+..+.
T Consensus 21 Gff~ark~~~k~ 32 (72)
T PRK01844 21 GFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 153
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=69.28 E-value=15 Score=24.31 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIVIVVVLLLHIYAR 43 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i~~~~~~~~ 43 (237)
+.+++++..++.+++.+++.+...
T Consensus 20 l~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 20 LGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444333333
No 154
>PRK00523 hypothetical protein; Provisional
Probab=68.44 E-value=26 Score=24.08 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhh
Q 026517 37 LLHIYARCVLRRQ 49 (237)
Q Consensus 37 ~~~~~~~~~~r~~ 49 (237)
.-|++.|.+.++.
T Consensus 21 ~Gffiark~~~k~ 33 (72)
T PRK00523 21 IGYFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 155
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=68.06 E-value=3.6 Score=36.39 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=33.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC---CCCCccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS---HSTCPIC 151 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~C 151 (237)
...||+--+.-.......++. |||+.-.+-++..-+. ...||+|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 568998877777666667887 9999999998875433 2359999
No 156
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.10 E-value=1.9 Score=42.38 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=30.9
Q ss_pred CCccccccccccC----CcceeecCCCCCCCchhHHHHHhcCCCCCccc
Q 026517 107 AIECAVCLSNLEN----EEMARVLPNCNHTFHAECIDKWLGSHSTCPIC 151 (237)
Q Consensus 107 ~~~C~IC~~~~~~----~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 151 (237)
+..|.-|++.... .+.+.++. |||.||..|+..-..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 3479999987542 24566776 999999999987765554 6555
No 158
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.52 E-value=3.2 Score=38.61 Aligned_cols=35 Identities=26% Similarity=0.755 Sum_probs=28.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS 144 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~ 144 (237)
...|.||.+.+.. .+..+. |||.||..|....+.+
T Consensus 70 ~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 70 DVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred cccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 4689999999876 344555 9999999999888743
No 159
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=66.09 E-value=6.2 Score=22.52 Aligned_cols=36 Identities=25% Similarity=0.572 Sum_probs=24.1
Q ss_pred cccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccC
Q 026517 110 CAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGA 155 (237)
Q Consensus 110 C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~ 155 (237)
|..|-..+...+.... . =+..||..| ..|..|..++
T Consensus 2 C~~C~~~i~~~~~~~~-~-~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLR-A-LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEE-e-CCccccccC--------CCCcccCCcC
Confidence 7778777765422222 2 467899888 5788887765
No 160
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.40 E-value=2.8 Score=38.35 Aligned_cols=45 Identities=24% Similarity=0.547 Sum_probs=31.1
Q ss_pred CccccccccccCCcceeecC-CCCCCCchhHHHHHhcCCCCCcccc
Q 026517 108 IECAVCLSNLENEEMARVLP-NCNHTFHAECIDKWLGSHSTCPICR 152 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl~~~~~CP~CR 152 (237)
..|+.|.-.+.....+..+. .|||-||+.|...|...+..|..|-
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~ 352 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECC 352 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCcc
Confidence 46888876655443222221 2899999999999988888776553
No 161
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.61 E-value=10 Score=28.45 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=32.0
Q ss_pred CccccccccccCCc----------ceeecCCCCCCCchhHHHHHhcCCCCCcccc
Q 026517 108 IECAVCLSNLENEE----------MARVLPNCNHTFHAECIDKWLGSHSTCPICR 152 (237)
Q Consensus 108 ~~C~IC~~~~~~~~----------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR 152 (237)
..|--|+..|..+. ....-+.|++.||.+|=.=+-+.-.+||-|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999999886531 1233446999999999655556666899984
No 162
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=62.36 E-value=28 Score=26.27 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 026517 32 IVVVLLLHIYARCVLRRQARR 52 (237)
Q Consensus 32 i~~i~~~~~~~~~~~r~~~~r 52 (237)
+..+-.+.++.|+++|..++|
T Consensus 98 LaamGA~~LLrR~cRr~arrR 118 (126)
T PF03229_consen 98 LAAMGAGALLRRCCRRAARRR 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333344445555555544433
No 163
>PHA02849 putative transmembrane protein; Provisional
Probab=62.21 E-value=21 Score=24.88 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIVIVVVLLLHIYARC 44 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i~~~~~~~~~ 44 (237)
++++.++++++++++.+++ .+.+|
T Consensus 17 v~vi~v~v~vI~i~~flLl-yLvkw 40 (82)
T PHA02849 17 VTVILVFVLVISFLAFMLL-YLIKW 40 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4444444344444444443 44444
No 164
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=61.42 E-value=13 Score=32.75 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026517 24 AIISLTIVIVVVLLLHIYARCVLRRQ 49 (237)
Q Consensus 24 ~i~~l~~vi~~i~~~~~~~~~~~r~~ 49 (237)
++++++++++++++++++...++.||
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544
No 165
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=61.12 E-value=7.2 Score=34.50 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=36.2
Q ss_pred CCCCCCCCCccccccccccCCcceeecCCCCC-CCchhHHHHHhcCCCCCccccccC
Q 026517 100 QDDGLAAAIECAVCLSNLENEEMARVLPNCNH-TFHAECIDKWLGSHSTCPICRTGA 155 (237)
Q Consensus 100 ~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H-~fh~~Ci~~wl~~~~~CP~CR~~~ 155 (237)
..+++-...+|..|-+..... ...+ |+| .||..|-. +.-..+||.|....
T Consensus 336 ~~~~~~s~~~~~~~~~~~~st---~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 336 PTNGLMSSLKGTSAGFGLLST---IWSG-GNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred ccccchhhcccccccCceeee---Eeec-CCcccChhhhhh--cccCCccccccccc
Confidence 345556677899998776654 4555 999 89999976 55567899996543
No 166
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.00 E-value=6.9 Score=33.44 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=27.5
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHh
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL 142 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 142 (237)
-..|..||..+..| .+.| =||+|+++||...+
T Consensus 43 FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~i 74 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDP---VITP-DGYLFDREAILEYI 74 (303)
T ss_pred cceeeeecccccCC---ccCC-CCeeeeHHHHHHHH
Confidence 45799999999988 5666 89999999998876
No 167
>PHA02692 hypothetical protein; Provisional
Probab=60.63 E-value=23 Score=24.17 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 026517 28 LTIVIVVVLLLHIYAR 43 (237)
Q Consensus 28 l~~vi~~i~~~~~~~~ 43 (237)
+++++++++++++|.+
T Consensus 53 ~~~~~~~vll~flYLK 68 (70)
T PHA02692 53 LIAAAIGVLLCFHYLK 68 (70)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 168
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=60.34 E-value=4.8 Score=34.77 Aligned_cols=49 Identities=24% Similarity=0.645 Sum_probs=34.6
Q ss_pred CccccccccccCCcceee---cCCCCCCCchhHHHHHh-cC--------CCCCccccccCC
Q 026517 108 IECAVCLSNLENEEMARV---LPNCNHTFHAECIDKWL-GS--------HSTCPICRTGAE 156 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~---l~~C~H~fh~~Ci~~wl-~~--------~~~CP~CR~~~~ 156 (237)
.+|-+|..++.+.+..+. -+.|+-.+|..|+..-+ .. ...||.|+..+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 489999999955544332 23588899999999844 21 236999998553
No 169
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=60.10 E-value=4 Score=25.50 Aligned_cols=44 Identities=30% Similarity=0.650 Sum_probs=30.0
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhc------CCCCCccccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG------SHSTCPICRT 153 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~------~~~~CP~CR~ 153 (237)
.|.||.........+.-- .|+..||..|+..=.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcC-CCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 388898855555555555 4889999999866532 2346888853
No 170
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=59.20 E-value=5.3 Score=26.96 Aligned_cols=12 Identities=33% Similarity=1.002 Sum_probs=8.7
Q ss_pred CCchhHHHHHhc
Q 026517 132 TFHAECIDKWLG 143 (237)
Q Consensus 132 ~fh~~Ci~~wl~ 143 (237)
.||+.||..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999984
No 171
>PF15179 Myc_target_1: Myc target protein 1
Probab=59.19 E-value=20 Score=29.29 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026517 17 NSKIMVTAIISLTIVIVVVLLLHIYARCVLRRQ 49 (237)
Q Consensus 17 ~~~~~ii~i~~l~~vi~~i~~~~~~~~~~~r~~ 49 (237)
+..+++.+.++.++.+++..+++++..|+.||+
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~~LltwlSRRR 50 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIWALLTWLSRRR 50 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566666666666666666666666766653
No 172
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=58.57 E-value=12 Score=33.19 Aligned_cols=50 Identities=24% Similarity=0.559 Sum_probs=32.9
Q ss_pred CCCcccccccccc---------------CC-cceeecCCCCCCCchhHHHHHhcC---------CCCCccccccCC
Q 026517 106 AAIECAVCLSNLE---------------NE-EMARVLPNCNHTFHAECIDKWLGS---------HSTCPICRTGAE 156 (237)
Q Consensus 106 ~~~~C~IC~~~~~---------------~~-~~~~~l~~C~H~fh~~Ci~~wl~~---------~~~CP~CR~~~~ 156 (237)
...+|++|+..=. .+ -.-...| |||+--.+=.+-|-+. +..||+|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 3678999987511 00 0112445 9999888888889643 346999977653
No 173
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=58.21 E-value=11 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026517 28 LTIVIVVVLLLHIYARCVLRRQARRRS 54 (237)
Q Consensus 28 l~~vi~~i~~~~~~~~~~~r~~~~rr~ 54 (237)
+++++.++.+.++..-.+++++.|++.
T Consensus 13 VF~lVglv~i~iva~~iYRKw~aRkr~ 39 (43)
T PF08114_consen 13 VFCLVGLVGIGIVALFIYRKWQARKRA 39 (43)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555566777666544
No 174
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=57.94 E-value=6.2 Score=25.10 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=25.9
Q ss_pred cccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 110 CAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 110 C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
|..|...+...+.+.. . -+..||..| ..|-.|+.++...
T Consensus 1 C~~C~~~I~~~~~~~~-~-~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK-A-MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEE-E-TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEE-e-CCcEEEccc--------cccCCCCCccCCC
Confidence 6667777765443322 2 677888887 6788888877554
No 175
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=57.92 E-value=10 Score=28.03 Aligned_cols=47 Identities=21% Similarity=0.513 Sum_probs=28.0
Q ss_pred CCccccccccccCCccee----ecCCC---CCCCchhHHHHHhcC---------CCCCccccc
Q 026517 107 AIECAVCLSNLENEEMAR----VLPNC---NHTFHAECIDKWLGS---------HSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~----~l~~C---~H~fh~~Ci~~wl~~---------~~~CP~CR~ 153 (237)
...|..|...-......- ..+.| .=.||..||..++.. +-.||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 346777776433221111 11236 557999999888742 225999987
No 176
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=57.88 E-value=31 Score=25.32 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 18 SKIMVTAIISLTIVIVVVLLLHIYARCV 45 (237)
Q Consensus 18 ~~~~ii~i~~l~~vi~~i~~~~~~~~~~ 45 (237)
.+.|.+++.+++.++++.+++++.+||-
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~ 41 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCP 41 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444444444444444443
No 177
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=57.58 E-value=18 Score=26.32 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 17 NSKIMVTAIISLTIVIVVVLLLHIYAR 43 (237)
Q Consensus 17 ~~~~~ii~i~~l~~vi~~i~~~~~~~~ 43 (237)
.+.+++|.++.+++.+-++.-++||+|
T Consensus 17 PWeIfLItLasVvvavGl~aGLfFcvR 43 (106)
T PF14654_consen 17 PWEIFLITLASVVVAVGLFAGLFFCVR 43 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666655555555555556554
No 178
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.35 E-value=4.9 Score=35.04 Aligned_cols=39 Identities=18% Similarity=0.433 Sum_probs=27.6
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH 145 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~ 145 (237)
...|.+|.|.+++..-|..-.-=.|.||+-|-+.-++.+
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 468999999998763332211125999999998887654
No 179
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=55.34 E-value=20 Score=28.21 Aligned_cols=23 Identities=13% Similarity=0.599 Sum_probs=9.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH
Q 026517 15 SLNSKIMVTAIISLTIVIVVVLL 37 (237)
Q Consensus 15 ~~~~~~~ii~i~~l~~vi~~i~~ 37 (237)
.++-.+++.+.+.+++++++++|
T Consensus 116 gY~nklilaisvtvv~~iliii~ 138 (154)
T PF14914_consen 116 GYNNKLILAISVTVVVMILIIIF 138 (154)
T ss_pred cccchhHHHHHHHHHHHHHHHHH
Confidence 34444544444433333333333
No 180
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=55.25 E-value=31 Score=21.97 Aligned_cols=35 Identities=11% Similarity=0.323 Sum_probs=18.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 026517 12 NPYSLNSKIMVTAIISLTIVIV-VVLLLHIYARCVL 46 (237)
Q Consensus 12 ~~~~~~~~~~ii~i~~l~~vi~-~i~~~~~~~~~~~ 46 (237)
+||......+-+.-++++++++ +.+++++..+|..
T Consensus 5 ~pF~YDy~tLrigGLi~A~vlfi~Gi~iils~kckC 40 (50)
T PF02038_consen 5 DPFYYDYETLRIGGLIFAGVLFILGILIILSGKCKC 40 (50)
T ss_dssp SGGGGCHHHHHHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred CCCccchhHhhccchHHHHHHHHHHHHHHHcCcccc
Confidence 7787777666555554444444 3444444445533
No 181
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=55.11 E-value=5 Score=26.85 Aligned_cols=36 Identities=17% Similarity=0.393 Sum_probs=17.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHh
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL 142 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 142 (237)
...|.+|...|..-..-..-..||++||..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 457999999996532222223499999999986554
No 182
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=54.82 E-value=15 Score=28.89 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=12.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHH
Q 026517 12 NPYSLNSKIMVTAIISLTIVIVVVL 36 (237)
Q Consensus 12 ~~~~~~~~~~ii~i~~l~~vi~~i~ 36 (237)
+.|+..+.++++.|++++++|++++
T Consensus 25 sffsthm~tILiaIvVliiiiivli 49 (189)
T PF05568_consen 25 SFFSTHMYTILIAIVVLIIIIIVLI 49 (189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544433
No 183
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=54.48 E-value=7.2 Score=23.03 Aligned_cols=13 Identities=15% Similarity=0.606 Sum_probs=9.2
Q ss_pred ccccccccccCCc
Q 026517 109 ECAVCLSNLENEE 121 (237)
Q Consensus 109 ~C~IC~~~~~~~~ 121 (237)
.|+-|...|..++
T Consensus 4 ~CP~C~~~f~v~~ 16 (37)
T PF13719_consen 4 TCPNCQTRFRVPD 16 (37)
T ss_pred ECCCCCceEEcCH
Confidence 5888887776554
No 184
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=53.25 E-value=19 Score=28.01 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=4.3
Q ss_pred hhhhhhhhcc
Q 026517 50 ARRRSVIRSL 59 (237)
Q Consensus 50 ~~rr~~~~~~ 59 (237)
+.||..+..+
T Consensus 49 ~yrr~Al~~L 58 (146)
T PF14316_consen 49 RYRREALREL 58 (146)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 185
>PLN02248 cellulose synthase-like protein
Probab=52.96 E-value=27 Score=36.15 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=28.3
Q ss_pred CCCCCchhHHHHHhcCCCCCccccccCCCCCCCC
Q 026517 129 CNHTFHAECIDKWLGSHSTCPICRTGAEPRPQPE 162 (237)
Q Consensus 129 C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 162 (237)
|++..|++|...-+.....||-|+.+........
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1135)
T PLN02248 150 CGFKICRDCYIDAVKSGGICPGCKEPYKVTDLDD 183 (1135)
T ss_pred ccchhHHhHhhhhhhcCCCCCCCccccccccccc
Confidence 7899999999999988889999999885544443
No 186
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=52.87 E-value=29 Score=20.77 Aligned_cols=19 Identities=16% Similarity=0.527 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026517 22 VTAIISLTIVIVVVLLLHI 40 (237)
Q Consensus 22 ii~i~~l~~vi~~i~~~~~ 40 (237)
..+++.+++++++++.+..
T Consensus 10 v~V~vg~~iiii~~~~YaC 28 (38)
T PF02439_consen 10 VAVVVGMAIIIICMFYYAC 28 (38)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444343333333
No 187
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.80 E-value=19 Score=24.81 Aligned_cols=47 Identities=32% Similarity=0.757 Sum_probs=30.6
Q ss_pred ccccccccccCCcceeecCCCC--CCCchhHHHHHhcCCCCCccccccCCCCC
Q 026517 109 ECAVCLSNLENEEMARVLPNCN--HTFHAECIDKWLGSHSTCPICRTGAEPRP 159 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~--H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 159 (237)
.|--|-.++.....-..+ |. |.||.+|...-| +..||.|-..+...+
T Consensus 7 nCECCDrDLpp~s~dA~I--CtfEcTFCadCae~~l--~g~CPnCGGelv~RP 55 (84)
T COG3813 7 NCECCDRDLPPDSTDARI--CTFECTFCADCAENRL--HGLCPNCGGELVARP 55 (84)
T ss_pred CCcccCCCCCCCCCceeE--EEEeeehhHhHHHHhh--cCcCCCCCchhhcCc
Confidence 466666666543222221 54 789999998765 478999988775543
No 188
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=52.57 E-value=4.6 Score=36.78 Aligned_cols=25 Identities=36% Similarity=0.869 Sum_probs=0.0
Q ss_pred CCCCCCchhHHHHHhc------CCCCCccccccC
Q 026517 128 NCNHTFHAECIDKWLG------SHSTCPICRTGA 155 (237)
Q Consensus 128 ~C~H~fh~~Ci~~wl~------~~~~CP~CR~~~ 155 (237)
.|||++-. ..|-. ....||+||..=
T Consensus 308 ~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 308 NCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ----------------------------------
T ss_pred cccceeee---cccccccccccccccCCCccccC
Confidence 49997764 35642 245799999744
No 189
>PF14979 TMEM52: Transmembrane 52
Probab=52.41 E-value=27 Score=27.44 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=14.4
Q ss_pred CchhHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHhh
Q 026517 16 LNSKIMVTAIISLT-IVIVVVLLLHIYAR-CVLRRQ 49 (237)
Q Consensus 16 ~~~~~~ii~i~~l~-~vi~~i~~~~~~~~-~~~r~~ 49 (237)
.+...|.|.+++++ +++++..+...++| |++|++
T Consensus 15 ~W~~LWyIwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 15 RWSSLWYIWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444433322 22333334455666 555543
No 190
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=52.30 E-value=15 Score=28.26 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026517 28 LTIVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 28 l~~vi~~i~~~~~~~~~~~r~ 48 (237)
+++.+++..+++++.+|++++
T Consensus 109 il~~i~is~~~~~~yr~~r~~ 129 (139)
T PHA03099 109 VLVGIIITCCLLSVYRFTRRT 129 (139)
T ss_pred HHHHHHHHHHHHhhheeeecc
Confidence 333344444444444444443
No 191
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=51.78 E-value=12 Score=23.74 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=22.7
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHh
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL 142 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 142 (237)
..|.+|-..|..-..-..-..||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 36888987776532212222499999999976543
No 192
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=51.05 E-value=58 Score=20.19 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIV 31 (237)
Q Consensus 20 ~~ii~i~~l~~v 31 (237)
+|+..+++++++
T Consensus 3 ~wlt~iFsvvIi 14 (49)
T PF11044_consen 3 TWLTTIFSVVII 14 (49)
T ss_pred hHHHHHHHHHHH
Confidence 344444444443
No 193
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=50.88 E-value=47 Score=24.38 Aligned_cols=32 Identities=6% Similarity=0.202 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 026517 17 NSKIMVTAIISLTI---VIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 17 ~~~~~ii~i~~l~~---vi~~i~~~~~~~~~~~r~ 48 (237)
++.+++.+++..++ +|++.+-+.++.+++.-.
T Consensus 16 sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY 50 (102)
T PF15176_consen 16 SWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASY 50 (102)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 33344443333333 344444445555544433
No 194
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=50.57 E-value=22 Score=25.99 Aligned_cols=9 Identities=0% Similarity=0.231 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 026517 34 VVLLLHIYA 42 (237)
Q Consensus 34 ~i~~~~~~~ 42 (237)
+++++|+..
T Consensus 19 ~~ifyFli~ 27 (97)
T COG1862 19 FAIFYFLII 27 (97)
T ss_pred HHHHHHhhc
Confidence 333333333
No 195
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=49.75 E-value=5.4 Score=36.33 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=0.0
Q ss_pred CCcccccccccc-------------C---CcceeecCCCCCCCchhHHHHHhcC---------CCCCccccccCCC
Q 026517 107 AIECAVCLSNLE-------------N---EEMARVLPNCNHTFHAECIDKWLGS---------HSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~-------------~---~~~~~~l~~C~H~fh~~Ci~~wl~~---------~~~CP~CR~~~~~ 157 (237)
..+|++|+..-. . +-.....| |||+--.+..+-|-+. +..||+|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 568999996511 0 01223456 9999999999999632 2369999887753
No 196
>PF15050 SCIMP: SCIMP protein
Probab=49.51 E-value=34 Score=25.98 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 026517 31 VIVVVLLLHIYARCVLRRQARR 52 (237)
Q Consensus 31 vi~~i~~~~~~~~~~~r~~~~r 52 (237)
+|++.+.+-++..|..|++.|+
T Consensus 16 II~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4444445555555667766654
No 197
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=49.23 E-value=6.4 Score=25.21 Aligned_cols=11 Identities=27% Similarity=0.942 Sum_probs=5.8
Q ss_pred CCccccccCCC
Q 026517 147 TCPICRTGAEP 157 (237)
Q Consensus 147 ~CP~CR~~~~~ 157 (237)
.||+|.+++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999998753
No 198
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=48.48 E-value=23 Score=35.32 Aligned_cols=18 Identities=39% Similarity=0.634 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIVIVVVLL 37 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i~~ 37 (237)
+++.+|+..+++++++++
T Consensus 273 ~fLl~ILG~~~livl~lL 290 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILL 290 (807)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444443333333333
No 199
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=48.47 E-value=53 Score=20.12 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=4.1
Q ss_pred HHHHHHHHHh
Q 026517 39 HIYARCVLRR 48 (237)
Q Consensus 39 ~~~~~~~~r~ 48 (237)
.++.+++.++
T Consensus 27 ~~~~~~F~~k 36 (42)
T PF11346_consen 27 VFFIRYFIRK 36 (42)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 200
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=48.40 E-value=53 Score=19.02 Aligned_cols=6 Identities=33% Similarity=0.589 Sum_probs=2.2
Q ss_pred HHHHHH
Q 026517 32 IVVVLL 37 (237)
Q Consensus 32 i~~i~~ 37 (237)
|++.++
T Consensus 19 ILvFWf 24 (34)
T PF08113_consen 19 ILVFWF 24 (34)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 201
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=48.36 E-value=9.5 Score=22.40 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=9.1
Q ss_pred ccccccccccCCc
Q 026517 109 ECAVCLSNLENEE 121 (237)
Q Consensus 109 ~C~IC~~~~~~~~ 121 (237)
.|+=|...|..++
T Consensus 4 ~Cp~C~~~y~i~d 16 (36)
T PF13717_consen 4 TCPNCQAKYEIDD 16 (36)
T ss_pred ECCCCCCEEeCCH
Confidence 5778877776554
No 202
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=47.60 E-value=4.2 Score=33.46 Aligned_cols=37 Identities=27% Similarity=0.499 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 026517 19 KIMVTAIISLTIVIVVVLLLHIYARCVLRRQARRRSV 55 (237)
Q Consensus 19 ~~~ii~i~~l~~vi~~i~~~~~~~~~~~r~~~~rr~~ 55 (237)
-.++.|.+++++||+.++..++++.|+.+.+.+|+.+
T Consensus 99 h~~iTITvSlImViaAliTtlvlK~C~~~s~~~r~~s 135 (205)
T PF15298_consen 99 HQIITITVSLIMVIAALITTLVLKNCCAQSQNRRRNS 135 (205)
T ss_pred eEEEEEeeehhHHHHHhhhhhhhhhhhhhhcccCCCc
Confidence 3445555556666666555566666777766665543
No 203
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=46.94 E-value=31 Score=30.74 Aligned_cols=30 Identities=20% Similarity=0.415 Sum_probs=16.4
Q ss_pred CCCCCch-hHHHH--HhcCCCCCccccccCCCC
Q 026517 129 CNHTFHA-ECIDK--WLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 129 C~H~fh~-~Ci~~--wl~~~~~CP~CR~~~~~~ 158 (237)
|+|.||. .|... .-.....||.|+.-..+.
T Consensus 223 C~~C~~HNGla~~ee~~yi~F~C~~Cn~LN~~~ 255 (328)
T KOG2846|consen 223 CSQCHHHNGLARKEEYEYITFRCPHCNALNPAK 255 (328)
T ss_pred chhhccccCcCChhhcCceEEECccccccCCCc
Confidence 8876653 34322 112234699998754443
No 205
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=46.57 E-value=1.9 Score=29.51 Aligned_cols=40 Identities=25% Similarity=0.505 Sum_probs=21.6
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
..|+.|..++... =+|.+|..|-.. +.....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~--------~~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--------GGHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE--------TTEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe--------CCEEECcccccc-ceecccCCCcccHHH
Confidence 3699998886654 256666667554 344567999988774
No 206
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=46.32 E-value=13 Score=31.97 Aligned_cols=42 Identities=17% Similarity=0.377 Sum_probs=30.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC--CCccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS--TCPIC 151 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~C 151 (237)
...|+|=...+..| .+-..|||+|-++=|...+.... .||+=
T Consensus 176 s~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 45799988888877 33346999999999999885533 36653
No 207
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=46.25 E-value=60 Score=21.56 Aligned_cols=29 Identities=14% Similarity=0.015 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026517 22 VTAIISLTIVIVVVLLLHIYARCVLRRQA 50 (237)
Q Consensus 22 ii~i~~l~~vi~~i~~~~~~~~~~~r~~~ 50 (237)
++++.+++...+..+++.++.|.......
T Consensus 30 iiflailfgftiagwlvvfcirlv~sail 58 (73)
T PF07069_consen 30 IIFLAILFGFTIAGWLVVFCIRLVCSAIL 58 (73)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33344445555566677777766555433
No 208
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=46.07 E-value=30 Score=24.00 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 026517 35 VLLLHIYARCVL 46 (237)
Q Consensus 35 i~~~~~~~~~~~ 46 (237)
+++.++++||++
T Consensus 39 ~fL~~liVRCfr 50 (81)
T PF11057_consen 39 LFLGLLIVRCFR 50 (81)
T ss_pred HHHHHHHHHHHH
Confidence 333344445543
No 209
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=45.63 E-value=43 Score=26.47 Aligned_cols=11 Identities=9% Similarity=0.302 Sum_probs=6.8
Q ss_pred CCCcccccccc
Q 026517 106 AAIECAVCLSN 116 (237)
Q Consensus 106 ~~~~C~IC~~~ 116 (237)
.+...++|+-+
T Consensus 96 g~LSFslAlLD 106 (151)
T PF14584_consen 96 GDLSFSLALLD 106 (151)
T ss_pred ccceeeeEEEe
Confidence 45567777655
No 210
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=45.36 E-value=2.6 Score=36.86 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred CccccccccccCCcceeecC----CCCCCCchhHHHHHhcCCCCCccccc
Q 026517 108 IECAVCLSNLENEEMARVLP----NCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~----~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
..||||-..-... .+.. +-.|.+|.-|-..|-.....||.|-.
T Consensus 173 g~CPvCGs~P~~s---~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 173 GYCPVCGSPPVLS---VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp SS-TTT---EEEE---EEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CcCCCCCCcCceE---EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 4799998773322 1111 13467888899999888889999943
No 211
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=44.76 E-value=38 Score=19.09 Aligned_cols=7 Identities=43% Similarity=0.434 Sum_probs=2.3
Q ss_pred CCCCCCC
Q 026517 1 MSIGDGD 7 (237)
Q Consensus 1 ~~i~~~~ 7 (237)
|+|.|-+
T Consensus 1 m~i~dhs 7 (33)
T PF09049_consen 1 MYITDHS 7 (33)
T ss_dssp -SS-TTT
T ss_pred CccccCC
Confidence 4555433
No 212
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=44.63 E-value=5.2 Score=26.92 Aligned_cols=27 Identities=11% Similarity=0.056 Sum_probs=19.9
Q ss_pred cCcccccccCCcccCCcccccchhhhh
Q 026517 209 LSSFRRILNGDWDRSSRRIQFEIADLE 235 (237)
Q Consensus 209 ~~~~~~~~~~~w~r~~~r~~~~~~~~~ 235 (237)
.-|.+...+++|+.|++.....||+.-
T Consensus 8 ~~W~w~~~~~~W~~Y~~~~~~~IE~a~ 34 (72)
T PF02825_consen 8 YVWQWEDDDGGWHPYDPEVSEIIEEAY 34 (72)
T ss_dssp EEEEEESETSSEEE--HHHHHHHHHHH
T ss_pred EEEEEECCCCcEEeCCcHHHHHHHHHH
Confidence 458888778889999999887787753
No 213
>PHA03054 IMV membrane protein; Provisional
Probab=44.44 E-value=52 Score=22.51 Aligned_cols=26 Identities=8% Similarity=0.145 Sum_probs=16.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHH
Q 026517 14 YSLNSKIMVTAIISLTIVIVVVLLLH 39 (237)
Q Consensus 14 ~~~~~~~~ii~i~~l~~vi~~i~~~~ 39 (237)
-+..+.+++++++.+++++++.+++.
T Consensus 44 ~~~~~~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 44 GCWGWYWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666777666666554
No 214
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=44.33 E-value=20 Score=29.84 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIVIVVVLLLHIYA 42 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i~~~~~~~ 42 (237)
++|+++++..+++++++++..|.
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~ 123 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYC 123 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHH
Confidence 44444443323333333333333
No 215
>PTZ00046 rifin; Provisional
Probab=44.15 E-value=35 Score=30.91 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026517 23 TAIISLTIVIVVVLLLHIYARCVLRRQA 50 (237)
Q Consensus 23 i~i~~l~~vi~~i~~~~~~~~~~~r~~~ 50 (237)
.++++++++++++++.+++...++.||.
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444555555555666555555555443
No 216
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=44.14 E-value=17 Score=28.63 Aligned_cols=31 Identities=23% Similarity=0.658 Sum_probs=19.7
Q ss_pred CCCCCchhHHHHHhcCC-----------CCCccccccCCCCCCCCCC
Q 026517 129 CNHTFHAECIDKWLGSH-----------STCPICRTGAEPRPQPESR 164 (237)
Q Consensus 129 C~H~fh~~Ci~~wl~~~-----------~~CP~CR~~~~~~~~~~~~ 164 (237)
+||.| +.||.+. .+||+|-..-..+.+..+.
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP~ 51 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAPA 51 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCCe
Confidence 56777 4788542 3799997765555544443
No 217
>PHA02650 hypothetical protein; Provisional
Probab=44.07 E-value=53 Score=22.99 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=16.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 15 SLNSKIMVTAIISLTIVIVVVLLLHIYA 42 (237)
Q Consensus 15 ~~~~~~~ii~i~~l~~vi~~i~~~~~~~ 42 (237)
...+.+++++++.+++++++.++++=.+
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYLK~~ 73 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVFKGY 73 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555666666666665555443
No 218
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=43.92 E-value=7 Score=28.68 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIVIVVV 35 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i 35 (237)
...+++++++.+++++
T Consensus 60 ~~~iili~lls~v~Il 75 (101)
T PF06024_consen 60 NGNIILISLLSFVCIL 75 (101)
T ss_pred cccchHHHHHHHHHHH
Confidence 3444444444443333
No 219
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=43.81 E-value=17 Score=28.68 Aligned_cols=30 Identities=20% Similarity=0.394 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026517 19 KIMVTAIISLTIVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 19 ~~~ii~i~~l~~vi~~i~~~~~~~~~~~r~ 48 (237)
.+++++++.++.++++.+++.++.--++++
T Consensus 55 kVvVIivl~Vi~lLvlYM~fL~~ldPllrk 84 (149)
T PF05434_consen 55 KVVVIIVLWVIGLLVLYMLFLMCLDPLLRK 84 (149)
T ss_pred EEEEEEeHHHHHHHHHHHHHHHHHhHHHhc
Confidence 444455555555555555554444333333
No 220
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=43.68 E-value=7.7 Score=34.08 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=0.0
Q ss_pred ccccccc
Q 026517 110 CAVCLSN 116 (237)
Q Consensus 110 C~IC~~~ 116 (237)
.++-|.+
T Consensus 210 ~P~Ilke 216 (290)
T PF05454_consen 210 SPVILKE 216 (290)
T ss_dssp -------
T ss_pred CCeeecc
Confidence 4444433
No 221
>PHA02844 putative transmembrane protein; Provisional
Probab=43.47 E-value=51 Score=22.78 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=15.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Q 026517 15 SLNSKIMVTAIISLTIVIVVVLLLH 39 (237)
Q Consensus 15 ~~~~~~~ii~i~~l~~vi~~i~~~~ 39 (237)
+..+..++++++.+++++++.+++.
T Consensus 45 ~~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 45 SSSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556566666666666666666554
No 222
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=43.35 E-value=37 Score=30.69 Aligned_cols=28 Identities=21% Similarity=0.365 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026517 23 TAIISLTIVIVVVLLLHIYARCVLRRQA 50 (237)
Q Consensus 23 i~i~~l~~vi~~i~~~~~~~~~~~r~~~ 50 (237)
.++++++++++++++++++...++.||.
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444455555555566555555555443
No 223
>PHA03030 hypothetical protein; Provisional
Probab=43.27 E-value=14 Score=27.14 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026517 33 VVVLLLHIYARCVLR 47 (237)
Q Consensus 33 ~~i~~~~~~~~~~~r 47 (237)
++++++++|.+...|
T Consensus 12 fifl~iffYI~~IkR 26 (122)
T PHA03030 12 FIFLFIFFYIRIIKR 26 (122)
T ss_pred HHHHHHHHHheeeec
Confidence 333444555544333
No 224
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=43.18 E-value=23 Score=25.44 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=29.4
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
..|+-|...+.-- -.+| |-.|+..+..|..|++++..
T Consensus 34 S~C~~C~~~L~~~---~lIP----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWW---DLIP----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCccc---ccch----------HHHHHHhCCCCcccCCCCCh
Confidence 4699998887765 3455 77899999999999998854
No 225
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=42.55 E-value=22 Score=29.21 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=4.5
Q ss_pred hhHHHHHh
Q 026517 135 AECIDKWL 142 (237)
Q Consensus 135 ~~Ci~~wl 142 (237)
.+-+..||
T Consensus 126 G~~~R~~L 133 (186)
T PF07406_consen 126 GENFRSYL 133 (186)
T ss_pred cccHHHHH
Confidence 44555665
No 226
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.45 E-value=24 Score=34.58 Aligned_cols=48 Identities=25% Similarity=0.607 Sum_probs=34.5
Q ss_pred ccccccccccCCcceeecCCCCC-CCchhHHHHHh--cC----CCCCccccccCCCCCC
Q 026517 109 ECAVCLSNLENEEMARVLPNCNH-TFHAECIDKWL--GS----HSTCPICRTGAEPRPQ 160 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H-~fh~~Ci~~wl--~~----~~~CP~CR~~~~~~~~ 160 (237)
.|+||-..+.-. ....||| ..|..|..+.. .. ...||+||..+.....
T Consensus 2 ~c~ic~~s~~~~----~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~ 56 (669)
T KOG2231|consen 2 SCAICAFSPDFV----GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSN 56 (669)
T ss_pred CcceeecCcccc----ccccccccccchhhhhhhhhhcccccccccCcccccceeeecc
Confidence 499998875543 4446999 99999998875 22 3358999997765533
No 227
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=42.45 E-value=36 Score=28.80 Aligned_cols=25 Identities=12% Similarity=0.091 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 23 TAIISLTIVIVVVLLLHIYARCVLR 47 (237)
Q Consensus 23 i~i~~l~~vi~~i~~~~~~~~~~~r 47 (237)
+++.+++++|++.+.+|.++-+|+-
T Consensus 189 vilpvvIaliVitl~vf~LvgLyr~ 213 (259)
T PF07010_consen 189 VILPVVIALIVITLSVFTLVGLYRM 213 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444333
No 228
>PHA02819 hypothetical protein; Provisional
Probab=42.41 E-value=56 Score=22.35 Aligned_cols=27 Identities=11% Similarity=0.360 Sum_probs=17.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHH
Q 026517 13 PYSLNSKIMVTAIISLTIVIVVVLLLH 39 (237)
Q Consensus 13 ~~~~~~~~~ii~i~~l~~vi~~i~~~~ 39 (237)
.-+..+.+++++++.+++++++.+++.
T Consensus 41 ~~~~~~~~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 41 KKSFLRYYLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666777777777666654
No 229
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=41.59 E-value=40 Score=23.77 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026517 30 IVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 30 ~vi~~i~~~~~~~~~~~r~ 48 (237)
.+++..+++.-|.+..+++
T Consensus 19 aIvvW~iv~ieYrk~~rqr 37 (81)
T PF00558_consen 19 AIVVWTIVYIEYRKIKRQR 37 (81)
T ss_dssp HHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444566666654443
No 230
>PHA02657 hypothetical protein; Provisional
Probab=41.51 E-value=49 Score=23.55 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIVIVVVLLL 38 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i~~~ 38 (237)
++++.++++++.+++.+++
T Consensus 27 imVitvfv~vI~il~flLL 45 (95)
T PHA02657 27 ILVFTIFIFVVCILIYLLI 45 (95)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4444444344444443333
No 231
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=41.46 E-value=11 Score=36.46 Aligned_cols=12 Identities=8% Similarity=0.501 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 026517 34 VVLLLHIYARCV 45 (237)
Q Consensus 34 ~i~~~~~~~~~~ 45 (237)
+++++++|++++
T Consensus 283 ~~Iiiil~~~LC 294 (684)
T PF12877_consen 283 LLIIIILYWKLC 294 (684)
T ss_pred HHHHHHHHHHHh
Confidence 333333444444
No 232
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=40.39 E-value=72 Score=25.47 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=11.2
Q ss_pred CCCCCCCCchhHHHHHHH
Q 026517 9 DHKNPYSLNSKIMVTAII 26 (237)
Q Consensus 9 ~~~~~~~~~~~~~ii~i~ 26 (237)
+++..|.+++.+++.-++
T Consensus 10 ~~~~~~~~~~~~~~~~ii 27 (174)
T PRK07352 10 EAEGGFGLNLNLLETNLI 27 (174)
T ss_pred hccCCCCCchhHHHHHHH
Confidence 456677777776665443
No 233
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=40.31 E-value=16 Score=23.32 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=12.2
Q ss_pred CCCCCchhHHHHHhcCCCCCccc
Q 026517 129 CNHTFHAECIDKWLGSHSTCPIC 151 (237)
Q Consensus 129 C~H~fh~~Ci~~wl~~~~~CP~C 151 (237)
|||.|-..=-.+- .....||.|
T Consensus 34 Cgh~w~~~v~~R~-~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDRT-RRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhhc-cCCCCCCCC
Confidence 6665554332222 445679988
No 234
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=40.14 E-value=60 Score=27.17 Aligned_cols=15 Identities=13% Similarity=0.543 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIVIVV 34 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~ 34 (237)
.|++.+|+|+++|++
T Consensus 129 amLIClIIIAVLfLI 143 (227)
T PF05399_consen 129 AMLICLIIIAVLFLI 143 (227)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333333333443333
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=39.71 E-value=20 Score=35.46 Aligned_cols=45 Identities=24% Similarity=0.652 Sum_probs=27.8
Q ss_pred CCccccccccccCC---------cceeecCCCCCCCchhHHHHHhcCCCCCccccccC
Q 026517 107 AIECAVCLSNLENE---------EMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~---------~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~ 155 (237)
+..|+-|...|..- ...-+-|.|+|.-|..=|.. ...||+|+..+
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 45676666665321 11223345999888776643 56899998755
No 236
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=39.29 E-value=48 Score=26.80 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=10.0
Q ss_pred CCCCCCCchhHHHHHH
Q 026517 10 HKNPYSLNSKIMVTAI 25 (237)
Q Consensus 10 ~~~~~~~~~~~~ii~i 25 (237)
.+..|.++..++++-+
T Consensus 16 ~~~~f~~n~~~~~~~~ 31 (184)
T CHL00019 16 SAGSFGFNTDILETNL 31 (184)
T ss_pred ccCccCCcchHHHHHH
Confidence 3456888876665533
No 237
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=39.27 E-value=50 Score=23.65 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026517 23 TAIISLTIVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 23 i~i~~l~~vi~~i~~~~~~~~~~~r~ 48 (237)
.+++.++++++++++.....|-..|+
T Consensus 38 lvI~~iFil~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 38 LVICGIFILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 33333444444555554555555554
No 238
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=39.08 E-value=74 Score=21.66 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 21 MVTAIISLTIVIVVVLLLHIYARCV 45 (237)
Q Consensus 21 ~ii~i~~l~~vi~~i~~~~~~~~~~ 45 (237)
+.+.++...+||++++++.++...+
T Consensus 5 l~i~i~Gm~iVF~~L~lL~~~i~l~ 29 (79)
T PF04277_consen 5 LQIMIIGMGIVFLVLILLILVISLM 29 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444444444333
No 239
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=39.05 E-value=47 Score=23.49 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=6.2
Q ss_pred CCCCHHHHhhCC
Q 026517 78 TGLDPTVIAALP 89 (237)
Q Consensus 78 ~~~~~~~i~~lp 89 (237)
..++++.++.|=
T Consensus 50 D~lTpDQVrAlH 61 (92)
T PHA02681 50 DKMTDDQVRAFH 61 (92)
T ss_pred ccCCHHHHHHHH
Confidence 345555555543
No 240
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.04 E-value=40 Score=25.42 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 026517 17 NSKIMVTAIISLTIVIVVVLLLH 39 (237)
Q Consensus 17 ~~~~~ii~i~~l~~vi~~i~~~~ 39 (237)
++.-+-..+++.+++++++++++
T Consensus 88 wWkn~Km~~il~~v~~i~l~iii 110 (116)
T KOG0860|consen 88 WWKNCKMRIILGLVIIILLVVII 110 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445554444444443333
No 241
>PHA03240 envelope glycoprotein M; Provisional
Probab=37.96 E-value=50 Score=27.74 Aligned_cols=10 Identities=10% Similarity=0.003 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q 026517 40 IYARCVLRRQ 49 (237)
Q Consensus 40 ~~~~~~~r~~ 49 (237)
+=.+++-+++
T Consensus 233 iPQKl~dKw~ 242 (258)
T PHA03240 233 IPQKLFDKWD 242 (258)
T ss_pred ccHHHHHHHh
Confidence 3334444443
No 242
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.87 E-value=24 Score=25.61 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=27.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG 143 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 143 (237)
...|.||-..+..++.....+ .-..|++|+..=..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee--CCcchHHHHHHHHh
Confidence 467999999999998877775 44689999977543
No 243
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=37.31 E-value=19 Score=37.28 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026517 15 SLNSKIMVTAIISLTIVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 15 ~~~~~~~ii~i~~l~~vi~~i~~~~~~~~~~~r~ 48 (237)
.....+|+|++.+|+.++++++++++++|+=.-+
T Consensus 973 ~~~vp~wiIi~svl~GLLlL~llv~~LwK~GFFK 1006 (1030)
T KOG3637|consen 973 ERPVPLWIIILSVLGGLLLLALLVLLLWKCGFFK 1006 (1030)
T ss_pred CCccceeeehHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4446677777777788887777777777764443
No 244
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.16 E-value=16 Score=20.91 Aligned_cols=9 Identities=33% Similarity=1.069 Sum_probs=6.5
Q ss_pred CCCCccccc
Q 026517 145 HSTCPICRT 153 (237)
Q Consensus 145 ~~~CP~CR~ 153 (237)
...||.|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 347999965
No 245
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=37.11 E-value=83 Score=24.77 Aligned_cols=28 Identities=14% Similarity=0.445 Sum_probs=11.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 14 YSLNSKIMVTAIISLTIVIVVVLLLHIYA 42 (237)
Q Consensus 14 ~~~~~~~~ii~i~~l~~vi~~i~~~~~~~ 42 (237)
|++++.++++.++ .++++++++..|+|.
T Consensus 4 ~~~~~~~~~~~~i-nflil~~lL~~fl~k 31 (164)
T PRK14473 4 LGINLGLLIAQLI-NFLLLIFLLRTFLYR 31 (164)
T ss_pred ccCcHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4555544444333 333333333333433
No 246
>PLN02436 cellulose synthase A
Probab=36.91 E-value=25 Score=36.35 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=31.7
Q ss_pred CCccccccccccC---CcceeecCCCCCCCchhHHHHHh-cCCCCCccccccCC
Q 026517 107 AIECAVCLSNLEN---EEMARVLPNCNHTFHAECIDKWL-GSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~---~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~CR~~~~ 156 (237)
...|.||-+++.. ++.-.--..|+--.|+.|++-=- +.++.||-|++...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3479999998633 22222111255558999985433 34567999998765
No 247
>PHA02902 putative IMV membrane protein; Provisional
Probab=36.20 E-value=65 Score=21.64 Aligned_cols=9 Identities=44% Similarity=0.612 Sum_probs=3.8
Q ss_pred CCCHHHHhh
Q 026517 79 GLDPTVIAA 87 (237)
Q Consensus 79 ~~~~~~i~~ 87 (237)
.++++.++.
T Consensus 53 ~lTpDQirA 61 (70)
T PHA02902 53 SLTPDQIKA 61 (70)
T ss_pred cCCHHHHHH
Confidence 344444443
No 248
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=36.18 E-value=27 Score=19.28 Aligned_cols=29 Identities=24% Similarity=0.662 Sum_probs=9.7
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHH
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECI 138 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci 138 (237)
.|.+|...........-. .|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~-~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCS-ECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-T-TT-----HHHH
T ss_pred cCCcCCCcCCCCceEECc-cCCCccChhcC
Confidence 478888877652223333 48888998885
No 249
>PLN02189 cellulose synthase
Probab=36.11 E-value=26 Score=36.06 Aligned_cols=50 Identities=16% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCccccccccccCC---cceeecCCCCCCCchhHHHHHh-cCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENE---EMARVLPNCNHTFHAECIDKWL-GSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~---~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~CR~~~~ 156 (237)
...|.||-+++... +....-..|+--.|+.|++-=- +.++.||-|++...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34799999987532 2222111266668999985432 44668999998775
No 250
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=36.07 E-value=54 Score=22.93 Aligned_cols=51 Identities=20% Similarity=0.418 Sum_probs=19.0
Q ss_pred CCccccccccccCCcc--eee-cCCCCCCCchhHHHHHh-cCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEM--ARV-LPNCNHTFHAECIDKWL-GSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~--~~~-l~~C~H~fh~~Ci~~wl-~~~~~CP~CR~~~~~ 157 (237)
...|-||-+++-.... +.+ --.|+--.|+.|+.-=. ..++.||-|+.+...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 4579999988654321 111 11266677889986544 456789999977643
No 251
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=35.90 E-value=23 Score=24.47 Aligned_cols=9 Identities=11% Similarity=0.073 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 026517 25 IISLTIVIV 33 (237)
Q Consensus 25 i~~l~~vi~ 33 (237)
.++++.+++
T Consensus 4 ~~~~~g~~~ 12 (75)
T PF14575_consen 4 ASIIVGVLL 12 (75)
T ss_dssp HHHHHHHHH
T ss_pred ehHHHHHHH
Confidence 333333333
No 252
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=35.51 E-value=21 Score=30.34 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=31.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCC--Cc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHST--CP 149 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~--CP 149 (237)
...|+|-+..+..+ ..-..|+|.|-.+-|...|+...+ ||
T Consensus 189 ~nrCpitl~p~~~p---ils~kcnh~~e~D~I~~~lq~~~trvcp 230 (275)
T COG5627 189 SNRCPITLNPDFYP---ILSSKCNHKPEMDLINKKLQVECTRVCP 230 (275)
T ss_pred cccCCcccCcchhH---HHHhhhcccccHHHHHHHhcCCceeecc
Confidence 45799999888777 333469999999999999875554 65
No 253
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=35.07 E-value=19 Score=28.43 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=19.3
Q ss_pred CCchhHHHHHhcCCC----CCccccccCCCC
Q 026517 132 TFHAECIDKWLGSHS----TCPICRTGAEPR 158 (237)
Q Consensus 132 ~fh~~Ci~~wl~~~~----~CP~CR~~~~~~ 158 (237)
.||..||++=|..-. .||.|+..-...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~ 31 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQ 31 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCC
Confidence 389999998875543 599997754333
No 254
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=34.30 E-value=12 Score=24.12 Aligned_cols=17 Identities=29% Similarity=0.864 Sum_probs=13.1
Q ss_pred ecCCCCCCCchhHHHHH
Q 026517 125 VLPNCNHTFHAECIDKW 141 (237)
Q Consensus 125 ~l~~C~H~fh~~Ci~~w 141 (237)
.-+.|+|.||..|...|
T Consensus 42 ~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 42 TCPKCGFSFCFRCKVPW 58 (64)
T ss_pred ECCCCCCeECCCCCCcC
Confidence 33348999999998887
No 255
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=33.55 E-value=74 Score=28.88 Aligned_cols=8 Identities=38% Similarity=0.351 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 026517 19 KIMVTAII 26 (237)
Q Consensus 19 ~~~ii~i~ 26 (237)
++++.+++
T Consensus 40 sl~~~~~~ 47 (398)
T PRK10747 40 SVTGLAII 47 (398)
T ss_pred hHHHHHHH
Confidence 33333333
No 256
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.39 E-value=6.1 Score=34.40 Aligned_cols=49 Identities=27% Similarity=0.533 Sum_probs=35.5
Q ss_pred CCccccccccccCC--cceeecCC--------CCCCCchhHHHHHhcCC-CCCccccccC
Q 026517 107 AIECAVCLSNLENE--EMARVLPN--------CNHTFHAECIDKWLGSH-STCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~--~~~~~l~~--------C~H~fh~~Ci~~wl~~~-~~CP~CR~~~ 155 (237)
...|.||...|... ..+..... |||..|..|+..-+.+. ..||.||...
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 45799999998832 22222224 99999999999987554 4799998753
No 257
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=33.17 E-value=32 Score=34.32 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 19 KIMVTAIISLTIVIVVVLLLHIYARCVLR 47 (237)
Q Consensus 19 ~~~ii~i~~l~~vi~~i~~~~~~~~~~~r 47 (237)
..++..+++|+++++++++++...+|...
T Consensus 276 l~ILG~~~livl~lL~vLl~yCrrkc~~~ 304 (807)
T PF10577_consen 276 LAILGGTALIVLILLCVLLCYCRRKCLKP 304 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence 44444455455555555544444444433
No 258
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=33.14 E-value=9.3 Score=33.55 Aligned_cols=34 Identities=26% Similarity=0.650 Sum_probs=20.0
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG 143 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 143 (237)
.|.+|+++|..+......- |.-+||..|+..|+.
T Consensus 216 vC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~ 249 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDRED-SLPVFHGKCYPNWLT 249 (288)
T ss_pred ecHHHHHHHhcccccchhh-ccccccccccccccc
Confidence 6777777776533333443 545677777666653
No 259
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=32.93 E-value=41 Score=21.93 Aligned_cols=8 Identities=0% Similarity=0.430 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 026517 8 DDHKNPYS 15 (237)
Q Consensus 8 ~~~~~~~~ 15 (237)
.+..++|.
T Consensus 19 ~~~e~Df~ 26 (56)
T PF11174_consen 19 KNRERDFA 26 (56)
T ss_pred hhHHHHHH
Confidence 34445553
No 260
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=32.90 E-value=34 Score=26.84 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026517 21 MVTAIISLTIVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 21 ~ii~i~~l~~vi~~i~~~~~~~~~~~r~ 48 (237)
+..+++.+++++.++..++++++.+.+.
T Consensus 63 IaGIVfgiVfimgvva~i~icvCmc~kn 90 (155)
T PF10873_consen 63 IAGIVFGIVFIMGVVAGIAICVCMCMKN 90 (155)
T ss_pred eeeeehhhHHHHHHHHHHHHHHhhhhhc
Confidence 3333444444444444444444433343
No 261
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=32.24 E-value=66 Score=25.59 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 026517 29 TIVIVVVLLLHIYAR 43 (237)
Q Consensus 29 ~~vi~~i~~~~~~~~ 43 (237)
++++++++.+..+++
T Consensus 11 ~il~lvl~~l~~~Ir 25 (175)
T COG4741 11 FILALVLYLLRAYIR 25 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334444444
No 262
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=32.18 E-value=23 Score=22.54 Aligned_cols=14 Identities=14% Similarity=0.563 Sum_probs=10.0
Q ss_pred CCccccccccccCC
Q 026517 107 AIECAVCLSNLENE 120 (237)
Q Consensus 107 ~~~C~IC~~~~~~~ 120 (237)
...||.|...+...
T Consensus 2 ~f~CP~C~~~~~~~ 15 (54)
T PF05605_consen 2 SFTCPYCGKGFSES 15 (54)
T ss_pred CcCCCCCCCccCHH
Confidence 35799998865543
No 263
>PHA02692 hypothetical protein; Provisional
Probab=32.10 E-value=1.4e+02 Score=20.33 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 026517 25 IISLTIVIVVVLLL 38 (237)
Q Consensus 25 i~~l~~vi~~i~~~ 38 (237)
++.+++++++.+++
T Consensus 53 ~~~~~~~vll~flY 66 (70)
T PHA02692 53 LIAAAIGVLLCFHY 66 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 264
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=31.64 E-value=16 Score=39.00 Aligned_cols=48 Identities=31% Similarity=0.589 Sum_probs=36.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~~ 155 (237)
...|.+|.........+...- |.-.||..|+++-+.... .||-||..-
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 347999999887765554444 778999999999886544 699998755
No 265
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=31.63 E-value=33 Score=35.48 Aligned_cols=50 Identities=20% Similarity=0.431 Sum_probs=31.4
Q ss_pred CCccccccccccCCcc--eee-cCCCCCCCchhHHHHH-hcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEM--ARV-LPNCNHTFHAECIDKW-LGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~--~~~-l~~C~H~fh~~Ci~~w-l~~~~~CP~CR~~~~ 156 (237)
...|-||-++...... +.+ -..|+-=.|+.|++-= -+.++.||-|++...
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3479999998654321 111 1125555899998432 245668999998764
No 266
>PRK01844 hypothetical protein; Provisional
Probab=31.54 E-value=1.4e+02 Score=20.57 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026517 20 IMVTAIISLTIVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i~~~~~~~~~~~r~ 48 (237)
++++++.+++.+++-+++...+..-+++.
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333434444333333
No 267
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=31.21 E-value=13 Score=33.00 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=28.9
Q ss_pred CCccccccccccCCcceeec---CCCCCCCchhHHHHHhcCCCCCccccc
Q 026517 107 AIECAVCLSNLENEEMARVL---PNCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l---~~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
...|+||-..-.... ++.. .+=.|.+|.-|-..|-.....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 347999987632210 1110 112356777788899888889999954
No 268
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=31.02 E-value=89 Score=25.60 Aligned_cols=10 Identities=20% Similarity=0.199 Sum_probs=3.9
Q ss_pred HHHHHHHHHh
Q 026517 39 HIYARCVLRR 48 (237)
Q Consensus 39 ~~~~~~~~r~ 48 (237)
+|..|...|.
T Consensus 29 IfaKRQI~Rf 38 (186)
T PF07406_consen 29 IFAKRQIMRF 38 (186)
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 269
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.84 E-value=18 Score=28.73 Aligned_cols=45 Identities=22% Similarity=0.455 Sum_probs=29.7
Q ss_pred ccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 111 AVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 111 ~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
.||+.--...+.+-.-|.=.+.||.+|-..-. ..||.|..+|...
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI---~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTI---TSCPNCSTPIRGD 52 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHH---HHCcCCCCCCCCc
Confidence 36666555444444444345789999976644 4699999988654
No 270
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=30.60 E-value=1.4e+02 Score=23.79 Aligned_cols=11 Identities=18% Similarity=0.081 Sum_probs=5.6
Q ss_pred CCCCchhHHHH
Q 026517 13 PYSLNSKIMVT 23 (237)
Q Consensus 13 ~~~~~~~~~ii 23 (237)
.|..++..+++
T Consensus 13 ~~~~~~~~~~~ 23 (175)
T PRK14472 13 LLSPNPGLIFW 23 (175)
T ss_pred ccCCCHHHHHH
Confidence 55565544443
No 271
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.21 E-value=21 Score=25.74 Aligned_cols=12 Identities=25% Similarity=0.935 Sum_probs=10.7
Q ss_pred CCchhHHHHHhc
Q 026517 132 TFHAECIDKWLG 143 (237)
Q Consensus 132 ~fh~~Ci~~wl~ 143 (237)
.||+.||..|+.
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 599999999984
No 272
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=29.99 E-value=23 Score=29.69 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026517 19 KIMVTAIISLTIVIVVVLLLHIYARCVLRRQ 49 (237)
Q Consensus 19 ~~~ii~i~~l~~vi~~i~~~~~~~~~~~r~~ 49 (237)
..+-|++.+++++ +.+++++++...+++++
T Consensus 35 d~~~I~iaiVAG~-~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 35 DYVKIMIAIVAGI-MTVILVIFIVVLVRYCR 64 (221)
T ss_pred cceeeeeeeecch-hhhHHHHHHHHHHHHHh
Confidence 3444444433333 33333345555443344
No 273
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.60 E-value=19 Score=31.90 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=29.4
Q ss_pred CCccccccccccCCcceeec---CCCCCCCchhHHHHHhcCCCCCccccc
Q 026517 107 AIECAVCLSNLENEEMARVL---PNCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l---~~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
...|++|-..-... +..+ .+=.|.+|.-|-..|-.....||.|-.
T Consensus 187 ~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45899998763222 1111 112356777788899888889999964
No 274
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.12 E-value=49 Score=28.05 Aligned_cols=30 Identities=17% Similarity=0.502 Sum_probs=20.9
Q ss_pred CchhHHHHHhcCCCCCccccccCCCCCCCC
Q 026517 133 FHAECIDKWLGSHSTCPICRTGAEPRPQPE 162 (237)
Q Consensus 133 fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 162 (237)
-|..|-...-++...||+|++.--.+.+..
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrnpKk 225 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRNPKK 225 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCCCCC
Confidence 456676666667789999998766555443
No 275
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=29.12 E-value=41 Score=22.23 Aligned_cols=12 Identities=42% Similarity=1.074 Sum_probs=8.2
Q ss_pred CCCCccccccCC
Q 026517 145 HSTCPICRTGAE 156 (237)
Q Consensus 145 ~~~CP~CR~~~~ 156 (237)
+..||+|+..+.
T Consensus 2 k~~CPlCkt~~n 13 (61)
T PF05715_consen 2 KSLCPLCKTTLN 13 (61)
T ss_pred CccCCcccchhh
Confidence 356888877663
No 276
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=29.12 E-value=45 Score=28.28 Aligned_cols=30 Identities=17% Similarity=0.516 Sum_probs=20.2
Q ss_pred CchhHHHHHhcCCCCCccccccCCCCCCCC
Q 026517 133 FHAECIDKWLGSHSTCPICRTGAEPRPQPE 162 (237)
Q Consensus 133 fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~~ 162 (237)
-|-.|-...-++...||+|+..-...++..
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRSrNPKK 280 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRSRNPKK 280 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccccCCCCC
Confidence 345566665566779999998766655444
No 277
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=29.10 E-value=47 Score=24.18 Aligned_cols=34 Identities=21% Similarity=0.463 Sum_probs=22.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHH
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKW 141 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 141 (237)
...|.||......-...... .|...||..|....
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~-~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHP-GCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCCceeEEcCCC-CCCcCCCHHHHHHC
Confidence 45799999873322222222 38889999998653
No 278
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=29.08 E-value=1.2e+02 Score=22.38 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=9.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 026517 16 LNSKIMVTAIISLTIVIVVVLL 37 (237)
Q Consensus 16 ~~~~~~ii~i~~l~~vi~~i~~ 37 (237)
++...++++.+.+++++++++.
T Consensus 64 vS~~F~L~~~~ti~lv~~~~~~ 85 (103)
T PF12955_consen 64 VSVPFWLFAGFTIALVVLVAGA 85 (103)
T ss_pred ccchhhHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 279
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=28.60 E-value=39 Score=28.90 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=17.5
Q ss_pred CccccccccccCCcceeecCCCCCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTF 133 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~f 133 (237)
..||+|...+........-+ .+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 46999999997554444433 57888
No 280
>PRK14710 hypothetical protein; Provisional
Probab=28.57 E-value=74 Score=21.80 Aligned_cols=9 Identities=22% Similarity=0.202 Sum_probs=3.6
Q ss_pred hhHHHHHHH
Q 026517 18 SKIMVTAII 26 (237)
Q Consensus 18 ~~~~ii~i~ 26 (237)
.+-|+++++
T Consensus 8 ~skm~ifif 16 (86)
T PRK14710 8 LSKMIIFIF 16 (86)
T ss_pred hhHHHHHHH
Confidence 334444433
No 281
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=28.49 E-value=45 Score=30.10 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=12.3
Q ss_pred CCccccccccccCCcceeecC
Q 026517 107 AIECAVCLSNLENEEMARVLP 127 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~ 127 (237)
+..|++|-+... +-+.-.|.
T Consensus 15 ~ElCPVCGDkVS-GYHYGLLT 34 (475)
T KOG4218|consen 15 GELCPVCGDKVS-GYHYGLLT 34 (475)
T ss_pred ccccccccCccc-cceeeeee
Confidence 457999988755 33333443
No 282
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=28.39 E-value=16 Score=31.94 Aligned_cols=41 Identities=20% Similarity=0.630 Sum_probs=30.3
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
.+.|+.|.+-+...+.|+.- =.|+||-.|. .|-+|.+.+..
T Consensus 92 GTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF--------~C~iC~R~L~T 132 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKA--QDFVYHLHCF--------ACFICKRQLAT 132 (383)
T ss_pred CCcchhhcCCCChHHHHHHh--hcceeehhhh--------hhHhhhccccc
Confidence 45799999988866555553 6799999994 57788776644
No 283
>PRK12705 hypothetical protein; Provisional
Probab=28.21 E-value=1.1e+02 Score=29.16 Aligned_cols=8 Identities=13% Similarity=0.563 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 026517 19 KIMVTAII 26 (237)
Q Consensus 19 ~~~ii~i~ 26 (237)
.+++++++
T Consensus 4 ~~~~~~~~ 11 (508)
T PRK12705 4 SILLVILL 11 (508)
T ss_pred hHHHHHHH
Confidence 33444333
No 284
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=28.20 E-value=1.4e+02 Score=19.15 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=9.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 026517 16 LNSKIMVTAIISLTIVIVVVLLLHI 40 (237)
Q Consensus 16 ~~~~~~ii~i~~l~~vi~~i~~~~~ 40 (237)
-++..-+..++.+++.+++++++-+
T Consensus 21 GWGTtplM~~~m~lf~vfl~iiL~I 45 (52)
T PF00737_consen 21 GWGTTPLMGVFMALFAVFLLIILEI 45 (52)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333443333333333
No 285
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=28.19 E-value=1.7e+02 Score=23.22 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=5.7
Q ss_pred CCCCCCchhHHH
Q 026517 11 KNPYSLNSKIMV 22 (237)
Q Consensus 11 ~~~~~~~~~~~i 22 (237)
...|.+++..++
T Consensus 9 ~~~l~~~~~~~~ 20 (173)
T PRK13460 9 LSLLDVNPGLVV 20 (173)
T ss_pred CCccCCcHhHHH
Confidence 345555544333
No 286
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=28.06 E-value=1.6e+02 Score=20.92 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHHHHH
Q 026517 17 NSKIMVTAIISLTIVIV-VVLLLHIYA 42 (237)
Q Consensus 17 ~~~~~ii~i~~l~~vi~-~i~~~~~~~ 42 (237)
+...+--++.++..+++ +++++|++.
T Consensus 29 N~sfirdFvLVic~~lVfVii~lFi~l 55 (84)
T PF06143_consen 29 NRSFIRDFVLVICCFLVFVIIVLFILL 55 (84)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344333333333333 333333333
No 287
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=27.88 E-value=42 Score=29.35 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=15.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 15 SLNSKIMVTAIISLTIVIVVVLLLHIYARCVLR 47 (237)
Q Consensus 15 ~~~~~~~ii~i~~l~~vi~~i~~~~~~~~~~~r 47 (237)
+....++|.+.+.|..+++++++.+++.+.++|
T Consensus 225 ~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 225 SRGFVVLISLAIALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred cceEEEEEehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444455555555454444333
No 288
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=27.66 E-value=1.3e+02 Score=21.16 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=4.2
Q ss_pred chhHHHHHHH
Q 026517 17 NSKIMVTAII 26 (237)
Q Consensus 17 ~~~~~ii~i~ 26 (237)
+.+-++++++
T Consensus 32 ~lKrlliivv 41 (93)
T PF08999_consen 32 NLKRLLIIVV 41 (93)
T ss_dssp HHHHHHHHHH
T ss_pred ccceEEEEEE
Confidence 3344444444
No 289
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.63 E-value=1.3e+02 Score=21.48 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 026517 28 LTIVIVVVLLLHIYARCVLRRQA 50 (237)
Q Consensus 28 l~~vi~~i~~~~~~~~~~~r~~~ 50 (237)
+++++.++.+++.|..|-.++..
T Consensus 7 v~~~~~v~~~i~~y~~~k~~ka~ 29 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKVKKAK 29 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655544433
No 290
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=27.58 E-value=1.2e+02 Score=17.25 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 026517 29 TIVIVVVLLLHIYA 42 (237)
Q Consensus 29 ~~vi~~i~~~~~~~ 42 (237)
++++-.++++.+|+
T Consensus 14 fi~iPt~FLiilyv 27 (31)
T PF05151_consen 14 FILIPTAFLIILYV 27 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheEe
Confidence 33344444444444
No 291
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=27.54 E-value=13 Score=22.51 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=13.3
Q ss_pred CCCCCCchhHHHHHhcCCCCCccccc
Q 026517 128 NCNHTFHAECIDKWLGSHSTCPICRT 153 (237)
Q Consensus 128 ~C~H~fh~~Ci~~wl~~~~~CP~CR~ 153 (237)
.|||.|-...-..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 37777664321110 12346999977
No 292
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=27.38 E-value=1.6e+02 Score=19.75 Aligned_cols=7 Identities=29% Similarity=0.434 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 026517 42 ARCVLRR 48 (237)
Q Consensus 42 ~~~~~r~ 48 (237)
.+.+.++
T Consensus 18 ar~~~~k 24 (64)
T PF03672_consen 18 ARKYMEK 24 (64)
T ss_pred HHHHHHH
Confidence 3444443
No 293
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.19 E-value=20 Score=33.37 Aligned_cols=37 Identities=22% Similarity=0.474 Sum_probs=26.3
Q ss_pred CccccccccccCCccee----ecCCCCCCCchhHHHHHhcC
Q 026517 108 IECAVCLSNLENEEMAR----VLPNCNHTFHAECIDKWLGS 144 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~----~l~~C~H~fh~~Ci~~wl~~ 144 (237)
..||.|........... ....|+|.||..|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 35999999887665222 11139999999998888754
No 294
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=27.16 E-value=54 Score=23.55 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 026517 19 KIMVTAIISLTIVIVVVLL 37 (237)
Q Consensus 19 ~~~ii~i~~l~~vi~~i~~ 37 (237)
.+..+++++++.++++.+.
T Consensus 36 ~vv~v~i~~lvaVg~~YL~ 54 (91)
T PF01708_consen 36 RVVEVAIFTLVAVGCLYLA 54 (91)
T ss_pred eEeeeeehHHHHHHHHHHH
Confidence 3444444434444443333
No 295
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=26.99 E-value=45 Score=24.53 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=26.5
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHh
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL 142 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 142 (237)
..|.||-.++..++....+.. -..|..|+..=.
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred eEEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 479999999999987777653 568999997754
No 296
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=26.87 E-value=37 Score=23.64 Aligned_cols=32 Identities=22% Similarity=0.546 Sum_probs=22.2
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHH
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDK 140 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 140 (237)
..|.+|....-.......- +|.-.||..|...
T Consensus 37 ~~C~~C~~~~Ga~i~C~~~-~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKGGACIGCSHP-GCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCCCeEEEEeCC-CCCcEEChHHHcc
Confidence 4699998774433333333 5999999999754
No 297
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.82 E-value=50 Score=31.64 Aligned_cols=6 Identities=0% Similarity=0.003 Sum_probs=2.2
Q ss_pred cccccc
Q 026517 112 VCLSNL 117 (237)
Q Consensus 112 IC~~~~ 117 (237)
+|.+.+
T Consensus 96 ~t~Dg~ 101 (548)
T COG2268 96 YTKDGM 101 (548)
T ss_pred EecCCC
Confidence 333333
No 298
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.76 E-value=30 Score=30.31 Aligned_cols=30 Identities=23% Similarity=0.516 Sum_probs=21.5
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHH
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECID 139 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~ 139 (237)
.|.||.....+.+.+..-- |...||..|+-
T Consensus 316 lC~IC~~P~~E~E~~FCD~-CDRG~HT~CVG 345 (381)
T KOG1512|consen 316 LCRICLGPVIESEHLFCDV-CDRGPHTLCVG 345 (381)
T ss_pred hhhccCCcccchheecccc-ccCCCCccccc
Confidence 5778888777766666554 88888888863
No 299
>PRK05978 hypothetical protein; Provisional
Probab=26.76 E-value=48 Score=26.13 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=18.6
Q ss_pred CCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 130 NHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 130 ~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
||.|+ .+|+-+..||.|-.++...
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccC
Confidence 46775 6788889999998877544
No 300
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=26.50 E-value=74 Score=23.23 Aligned_cols=21 Identities=10% Similarity=0.244 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026517 29 TIVIVVVLLLHIYARCVLRRQ 49 (237)
Q Consensus 29 ~~vi~~i~~~~~~~~~~~r~~ 49 (237)
.++.+++++.++|...++..+
T Consensus 11 ~ll~~vl~~~ifyFli~RPQr 31 (97)
T COG1862 11 LLLPLVLIFAIFYFLIIRPQR 31 (97)
T ss_pred HHHHHHHHHHHHHHhhcCHHH
Confidence 344555666666665544443
No 301
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=26.50 E-value=80 Score=29.12 Aligned_cols=15 Identities=40% Similarity=0.782 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhh
Q 026517 35 VLLLHIYARCVLRRQ 49 (237)
Q Consensus 35 i~~~~~~~~~~~r~~ 49 (237)
+++++++.+|+.|+.
T Consensus 36 ~ll~yl~~~CC~r~~ 50 (406)
T PF04906_consen 36 FLLIYLICRCCCRRP 50 (406)
T ss_pred HHHHHHHHHhhCCCC
Confidence 333444445555543
No 302
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.30 E-value=39 Score=26.24 Aligned_cols=44 Identities=23% Similarity=0.671 Sum_probs=24.5
Q ss_pred CCCCCcccccccc-ccCCcceeecCCCCCCCch-------hHHHHH-hcCCC---CCccccccC
Q 026517 104 LAAAIECAVCLSN-LENEEMARVLPNCNHTFHA-------ECIDKW-LGSHS---TCPICRTGA 155 (237)
Q Consensus 104 ~~~~~~C~IC~~~-~~~~~~~~~l~~C~H~fh~-------~Ci~~w-l~~~~---~CP~CR~~~ 155 (237)
...+..|.||+-. |.+ +|||.-|+ .|--+. |++++ .|-+|+...
T Consensus 62 v~ddatC~IC~KTKFAD--------G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFAD--------GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred cCcCcchhhhhhccccc--------ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 3346799999865 333 48885442 232222 22233 488887644
No 303
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=26.27 E-value=74 Score=25.54 Aligned_cols=27 Identities=7% Similarity=0.285 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026517 23 TAIISLTIVIVVVLLLHIYARCVLRRQ 49 (237)
Q Consensus 23 i~i~~l~~vi~~i~~~~~~~~~~~r~~ 49 (237)
++++.+.+++++.+++..++...+.++
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r~~~rk 125 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLRRRNRK 125 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 444445566666666666654444443
No 304
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=25.74 E-value=3.9 Score=32.36 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHH
Q 026517 19 KIMVTAIISLTIVIV 33 (237)
Q Consensus 19 ~~~ii~i~~l~~vi~ 33 (237)
.++|.+++.+.+.++
T Consensus 49 nIVIGvVVGVGg~il 63 (154)
T PF04478_consen 49 NIVIGVVVGVGGPIL 63 (154)
T ss_pred cEEEEEEecccHHHH
Confidence 345444444333333
No 305
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=25.57 E-value=66 Score=24.65 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=4.8
Q ss_pred HHHHHHHHhhh
Q 026517 40 IYARCVLRRQA 50 (237)
Q Consensus 40 ~~~~~~~r~~~ 50 (237)
++++..+++++
T Consensus 100 lcW~~~~rkK~ 110 (129)
T PF15099_consen 100 LCWKPIIRKKK 110 (129)
T ss_pred heehhhhHhHH
Confidence 44444444433
No 306
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=25.46 E-value=1.3e+02 Score=17.64 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026517 28 LTIVIVVVLLLHIYA 42 (237)
Q Consensus 28 l~~vi~~i~~~~~~~ 42 (237)
+++++-.++++.+|+
T Consensus 13 Lfi~iPt~FLlilYv 27 (35)
T PRK04989 13 LFVLVPTVFLIILYI 27 (35)
T ss_pred HHHHHHHHHHHHHhe
Confidence 333444444444444
No 307
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.22 E-value=2e+02 Score=18.68 Aligned_cols=8 Identities=13% Similarity=0.285 Sum_probs=2.9
Q ss_pred hhHHHHHH
Q 026517 18 SKIMVTAI 25 (237)
Q Consensus 18 ~~~~ii~i 25 (237)
..+++.++
T Consensus 22 l~il~~f~ 29 (68)
T PF06305_consen 22 LLILIAFL 29 (68)
T ss_pred HHHHHHHH
Confidence 33333333
No 308
>PRK09039 hypothetical protein; Validated
Probab=25.11 E-value=1.3e+02 Score=27.01 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026517 13 PYSLNSKIMVTAIISLTIVIVVVLLLHIYARCVLRRQA 50 (237)
Q Consensus 13 ~~~~~~~~~ii~i~~l~~vi~~i~~~~~~~~~~~r~~~ 50 (237)
..++|+. ++-++..+++|+++++.+|++..+|+....
T Consensus 12 ~~~~wpg-~vd~~~~ll~~~~f~l~~f~~~q~fLs~~i 48 (343)
T PRK09039 12 GVDYWPG-FVDALSTLLLVIMFLLTVFVVAQFFLSREI 48 (343)
T ss_pred CCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544 444555566666666666777777766553
No 309
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=24.95 E-value=34 Score=32.89 Aligned_cols=33 Identities=18% Similarity=0.538 Sum_probs=23.2
Q ss_pred CCccccccccccCC-----------cceeecCCCCCCCchhHHHHH
Q 026517 107 AIECAVCLSNLENE-----------EMARVLPNCNHTFHAECIDKW 141 (237)
Q Consensus 107 ~~~C~IC~~~~~~~-----------~~~~~l~~C~H~fh~~Ci~~w 141 (237)
...|+||.+.|..- +.|.+. -|-+||..|+..-
T Consensus 513 ~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 513 QASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEK 556 (579)
T ss_pred ccCCcccccccceeecchhhheeecceeeec--cCceeeccccchH
Confidence 55799999998642 233332 4889999998664
No 310
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.72 E-value=50 Score=34.13 Aligned_cols=49 Identities=22% Similarity=0.422 Sum_probs=31.7
Q ss_pred CCccccccccccCCc---ce-eecCCCCCCCchhHHHHHh-cCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEE---MA-RVLPNCNHTFHAECIDKWL-GSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~---~~-~~l~~C~H~fh~~Ci~~wl-~~~~~CP~CR~~~~ 156 (237)
...|.||-++..... .. ..- .|+--.|+.|++-=. +.++.||-|+....
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~-eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACH-VCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEec-cCCCccccchhhhhhhcCCccCCccCCchh
Confidence 457999999865332 21 112 255558999984322 44567999998775
No 311
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.63 E-value=51 Score=22.11 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 16 LNSKIMVTAIISLTIVIVVVLLLHIYA 42 (237)
Q Consensus 16 ~~~~~~ii~i~~l~~vi~~i~~~~~~~ 42 (237)
++..+++++++.-+++++++-.+.+|+
T Consensus 10 lnPGlIVLlvV~g~ll~flvGnyvlY~ 36 (69)
T PF04689_consen 10 LNPGLIVLLVVAGLLLVFLVGNYVLYV 36 (69)
T ss_pred CCCCeEEeehHHHHHHHHHHHHHHHHH
Confidence 333344444443444444444444444
No 312
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=24.35 E-value=1.1e+02 Score=21.35 Aligned_cols=14 Identities=14% Similarity=0.600 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 026517 29 TIVIVVVLLLHIYA 42 (237)
Q Consensus 29 ~~vi~~i~~~~~~~ 42 (237)
++++++++++..+.
T Consensus 9 af~vLvi~l~~~l~ 22 (90)
T PF06103_consen 9 AFAVLVIFLIKVLK 22 (90)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 313
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=24.22 E-value=57 Score=28.57 Aligned_cols=7 Identities=29% Similarity=0.358 Sum_probs=2.7
Q ss_pred HHHHhhh
Q 026517 44 CVLRRQA 50 (237)
Q Consensus 44 ~~~r~~~ 50 (237)
++.++++
T Consensus 307 ~~~~~~~ 313 (354)
T PF05795_consen 307 WFNRRRG 313 (354)
T ss_pred hhccccc
Confidence 3344333
No 314
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=24.19 E-value=1.6e+02 Score=17.24 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026517 23 TAIISLTIVIVVVLLLHIY 41 (237)
Q Consensus 23 i~i~~l~~vi~~i~~~~~~ 41 (237)
++....++++++++++|++
T Consensus 10 lan~lG~~~~~LIVlYH~v 28 (35)
T PF10215_consen 10 LANFLGVAAMVLIVLYHFV 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333344455555555553
No 315
>PLN02400 cellulose synthase
Probab=23.86 E-value=40 Score=34.95 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=31.1
Q ss_pred CCccccccccccCCcc--eeec-CCCCCCCchhHHHHH-hcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEM--ARVL-PNCNHTFHAECIDKW-LGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~--~~~l-~~C~H~fh~~Ci~~w-l~~~~~CP~CR~~~~ 156 (237)
...|-||-++...... +.+. -.|+--.|+.|++-= -+.++.||-|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3479999998654321 1111 125555899998432 234568999998764
No 316
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=23.62 E-value=1.3e+02 Score=20.67 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=9.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 026517 17 NSKIMVTAIISLTIVIVVVLLLHI 40 (237)
Q Consensus 17 ~~~~~ii~i~~l~~vi~~i~~~~~ 40 (237)
|+...+..++..++.+++++++-+
T Consensus 37 WGTtp~Mg~~m~lf~vfl~iilei 60 (73)
T PLN00055 37 WGTTPLMGVAMALFAVFLSIILEI 60 (73)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Confidence 333334333333333333333333
No 317
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=23.45 E-value=67 Score=27.89 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=26.3
Q ss_pred CCccccccccccCCcceeecC-CCCCCCchhHHHHH-hcCCCCCc
Q 026517 107 AIECAVCLSNLENEEMARVLP-NCNHTFHAECIDKW-LGSHSTCP 149 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~w-l~~~~~CP 149 (237)
-..|.||++.-..+..-.-|. +=.=.=|++|...| |..+..||
T Consensus 30 LsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 30 LSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred eeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 457999988876553211111 01113469999999 46677898
No 318
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.35 E-value=73 Score=21.01 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=19.9
Q ss_pred CccccccccccC--CcceeecCCCCCCCchhHH
Q 026517 108 IECAVCLSNLEN--EEMARVLPNCNHTFHAECI 138 (237)
Q Consensus 108 ~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci 138 (237)
..|+.|-..... ......-|.||+.+|++--
T Consensus 29 q~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~n 61 (69)
T PF07282_consen 29 QTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVN 61 (69)
T ss_pred cCccCcccccccccccceEEcCCCCCEECcHHH
Confidence 469999877665 3344444457777776644
No 319
>CHL00066 psbH photosystem II protein H
Probab=23.19 E-value=1.4e+02 Score=20.56 Aligned_cols=20 Identities=0% Similarity=0.140 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 026517 18 SKIMVTAIISLTIVIVVVLL 37 (237)
Q Consensus 18 ~~~~ii~i~~l~~vi~~i~~ 37 (237)
+...+..++..++.++++++
T Consensus 38 GTtp~Mgv~m~lf~vfl~ii 57 (73)
T CHL00066 38 GTTPLMGVAMALFAVFLSII 57 (73)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 320
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=23.05 E-value=1.2e+02 Score=19.60 Aligned_cols=6 Identities=0% Similarity=-0.003 Sum_probs=2.2
Q ss_pred HHHHHH
Q 026517 20 IMVTAI 25 (237)
Q Consensus 20 ~~ii~i 25 (237)
+|++++
T Consensus 5 ~wlIIv 10 (55)
T PF11446_consen 5 PWLIIV 10 (55)
T ss_pred hhHHHH
Confidence 333333
No 321
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.97 E-value=1.3e+02 Score=21.02 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=3.7
Q ss_pred CCCHHHHhh
Q 026517 79 GLDPTVIAA 87 (237)
Q Consensus 79 ~~~~~~i~~ 87 (237)
|..++.|+.
T Consensus 48 gy~e~~I~~ 56 (85)
T PF11337_consen 48 GYKESDIKS 56 (85)
T ss_pred CCcHHHhhh
Confidence 344444443
No 322
>PRK04023 DNA polymerase II large subunit; Validated
Probab=22.85 E-value=57 Score=33.61 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=30.2
Q ss_pred CCccccccccccCCcceeecCCCC-----CCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCN-----HTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+-|-..... ..-|.|| ..||..| .+......||.|...+...
T Consensus 626 ~RfCpsCG~~t~~----frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 626 RRKCPSCGKETFY----RRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPY 676 (1121)
T ss_pred CccCCCCCCcCCc----ccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCcc
Confidence 4579999877533 2444588 3688999 3334445699998776543
No 323
>PHA03291 envelope glycoprotein I; Provisional
Probab=22.66 E-value=45 Score=30.11 Aligned_cols=12 Identities=25% Similarity=0.108 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 026517 37 LLHIYARCVLRR 48 (237)
Q Consensus 37 ~~~~~~~~~~r~ 48 (237)
++.++.||.+|+
T Consensus 306 C~Ccl~R~~rRr 317 (401)
T PHA03291 306 CACCLHRRCRRR 317 (401)
T ss_pred hhhhhhhhhhcc
Confidence 333334443333
No 324
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=22.47 E-value=1.6e+02 Score=16.97 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 026517 28 LTIVIVVVLLLHIYA 42 (237)
Q Consensus 28 l~~vi~~i~~~~~~~ 42 (237)
+++++-.++++.+|+
T Consensus 13 Lfi~iPt~FLiilYv 27 (33)
T TIGR03038 13 LFILVPTVFLLILYI 27 (33)
T ss_pred HHHHHHHHHHHHHhe
Confidence 333344444444443
No 325
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=22.45 E-value=1.2e+02 Score=27.74 Aligned_cols=9 Identities=33% Similarity=0.578 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 026517 39 HIYARCVLR 47 (237)
Q Consensus 39 ~~~~~~~~r 47 (237)
..|+.|++|
T Consensus 303 Ls~Imc~rR 311 (386)
T PF05510_consen 303 LSYIMCCRR 311 (386)
T ss_pred HHHHheech
Confidence 334434444
No 326
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=22.33 E-value=1.9e+02 Score=21.83 Aligned_cols=23 Identities=9% Similarity=0.296 Sum_probs=10.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 026517 16 LNSKIMVTAIISLTIVIVVVLLL 38 (237)
Q Consensus 16 ~~~~~~ii~i~~l~~vi~~i~~~ 38 (237)
+..++++.+++++++++++.++.
T Consensus 4 I~~KL~~~f~~~~~l~~~~~~~~ 26 (181)
T PF12729_consen 4 IRTKLILGFGLIILLLLIVGIVG 26 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554444444444333
No 327
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.31 E-value=1.1e+02 Score=22.78 Aligned_cols=9 Identities=0% Similarity=-0.156 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 026517 36 LLLHIYARC 44 (237)
Q Consensus 36 ~~~~~~~~~ 44 (237)
++.++|.-.
T Consensus 13 i~~i~yF~~ 21 (109)
T PRK05886 13 IMGGFMYFA 21 (109)
T ss_pred HHHHHHHHH
Confidence 334445443
No 328
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=22.30 E-value=1.5e+02 Score=26.68 Aligned_cols=23 Identities=13% Similarity=0.418 Sum_probs=17.6
Q ss_pred CCchhHHHHHhcCCCCCcccccc
Q 026517 132 TFHAECIDKWLGSHSTCPICRTG 154 (237)
Q Consensus 132 ~fh~~Ci~~wl~~~~~CP~CR~~ 154 (237)
.-|..-+..++..+..||+|-..
T Consensus 354 gtq~~~~~sy~~e~~~~~~~~~h 376 (417)
T COG5233 354 GTQRAVTTSYHEENGECPLCFKH 376 (417)
T ss_pred cccchhhHhHhhcCCcccccccc
Confidence 45667788888888899999443
No 329
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=22.22 E-value=32 Score=33.85 Aligned_cols=46 Identities=20% Similarity=0.527 Sum_probs=28.8
Q ss_pred ccccccccccCCc-------ceeecCCCCCCCchhHHHHH--h--------cCCCCCccccccC
Q 026517 109 ECAVCLSNLENEE-------MARVLPNCNHTFHAECIDKW--L--------GSHSTCPICRTGA 155 (237)
Q Consensus 109 ~C~IC~~~~~~~~-------~~~~l~~C~H~fh~~Ci~~w--l--------~~~~~CP~CR~~~ 155 (237)
.|.||-|.=.... .+-+- +|+..||..|-..- | .+-+.|-+|...+
T Consensus 119 tCYIC~E~GrpnkA~~GACMtCNKs-~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 119 TCYICNEEGRPNKAAKGACMTCNKS-GCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred eeeeecccCCccccccccceecccc-cchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 6999988732211 11122 37889999997654 1 2344699998644
No 330
>PF15106 TMEM156: TMEM156 protein family
Probab=22.09 E-value=1.8e+02 Score=24.44 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026517 27 SLTIVIVVVLLLHIYARCVLR 47 (237)
Q Consensus 27 ~l~~vi~~i~~~~~~~~~~~r 47 (237)
+++++++++++++++.+.+..
T Consensus 180 vLVllVfiflii~iI~KIle~ 200 (226)
T PF15106_consen 180 VLVLLVFIFLIILIIYKILEG 200 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555443
No 331
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.98 E-value=2e+02 Score=19.90 Aligned_cols=18 Identities=11% Similarity=-0.025 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026517 28 LTIVIVVVLLLHIYARCV 45 (237)
Q Consensus 28 l~~vi~~i~~~~~~~~~~ 45 (237)
.++++++++....++.+|
T Consensus 9 plivf~ifVap~WL~lHY 26 (75)
T PF06667_consen 9 PLIVFMIFVAPIWLILHY 26 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444443333333333
No 332
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=21.97 E-value=60 Score=30.47 Aligned_cols=49 Identities=18% Similarity=0.534 Sum_probs=29.5
Q ss_pred CCcccccccccc-CCcceeecCCCCCCCchhHHHHHhcC--------CCCCccccccC
Q 026517 107 AIECAVCLSNLE-NEEMARVLPNCNHTFHAECIDKWLGS--------HSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~CR~~~ 155 (237)
...|.+|+.-.. ....+..--.|+-.||..|...-... ...|=.|....
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 456999995543 22222222247889999998765421 12488887533
No 333
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=21.94 E-value=73 Score=24.78 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=11.4
Q ss_pred CCCCccccccCCCCC
Q 026517 145 HSTCPICRTGAEPRP 159 (237)
Q Consensus 145 ~~~CP~CR~~~~~~~ 159 (237)
...||.|...+....
T Consensus 123 ~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 123 TFTCPRCGEELEEDD 137 (147)
T ss_pred cEECCCCCCEEEEcC
Confidence 367999999886543
No 334
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=21.77 E-value=57 Score=32.79 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=24.2
Q ss_pred CccccccccccC--------CcceeecCCCCCCCchhHHHHHh
Q 026517 108 IECAVCLSNLEN--------EEMARVLPNCNHTFHAECIDKWL 142 (237)
Q Consensus 108 ~~C~IC~~~~~~--------~~~~~~l~~C~H~fh~~Ci~~wl 142 (237)
..|..|...|.. ..+++ .||++||..|-....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCR---kCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCR---SCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCccccccccccccccccc---CCccccCccccCCcc
Confidence 469999999953 33454 499999999986553
No 335
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=21.59 E-value=1.3e+02 Score=27.30 Aligned_cols=7 Identities=0% Similarity=-0.140 Sum_probs=2.5
Q ss_pred chhHHHH
Q 026517 17 NSKIMVT 23 (237)
Q Consensus 17 ~~~~~ii 23 (237)
+..++++
T Consensus 40 s~~~~~~ 46 (409)
T TIGR00540 40 SITGLAI 46 (409)
T ss_pred eHHHHHH
Confidence 3333333
No 336
>PF15069 FAM163: FAM163 family
Probab=21.53 E-value=41 Score=26.31 Aligned_cols=6 Identities=67% Similarity=1.680 Sum_probs=3.7
Q ss_pred CCCccc
Q 026517 146 STCPIC 151 (237)
Q Consensus 146 ~~CP~C 151 (237)
..||.|
T Consensus 92 ~~CptC 97 (143)
T PF15069_consen 92 SYCPTC 97 (143)
T ss_pred CcCCCC
Confidence 346777
No 337
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=21.44 E-value=25 Score=30.57 Aligned_cols=46 Identities=15% Similarity=0.546 Sum_probs=30.7
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcC----CCCCccccccC
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS----HSTCPICRTGA 155 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~~ 155 (237)
.|.||-..-...+.+.. ..|...||..||.+=+.. .-+|-+|-..+
T Consensus 283 ~csicgtsenddqllfc-ddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 283 YCSICGTSENDDQLLFC-DDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred eeccccCcCCCceeEee-cccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 58888776555444444 359999999999876632 33688885433
No 338
>PLN02195 cellulose synthase A
Probab=21.34 E-value=73 Score=32.74 Aligned_cols=49 Identities=16% Similarity=0.396 Sum_probs=32.6
Q ss_pred CCccccccccccCCc---c-eeecCCCCCCCchhHHHHHh-cCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEE---M-ARVLPNCNHTFHAECIDKWL-GSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~---~-~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~CR~~~~ 156 (237)
...|.||-+...... . |..- .|+--.|+.|++-=- +.++.||-|++...
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~-eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACH-ECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEec-cCCCccccchhhhhhhcCCccCCccCCccc
Confidence 457999998764332 1 2222 266678999984322 44667999999886
No 339
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=21.22 E-value=2e+02 Score=17.33 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIVIVV 34 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~ 34 (237)
+|++..+..+.++.+
T Consensus 10 LWlVgtv~G~~vi~l 24 (40)
T PF01788_consen 10 LWLVGTVAGIAVIGL 24 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 444444434333333
No 340
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=20.70 E-value=1.8e+02 Score=24.56 Aligned_cols=14 Identities=14% Similarity=0.403 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHh
Q 026517 35 VLLLHIYARCVLRR 48 (237)
Q Consensus 35 i~~~~~~~~~~~r~ 48 (237)
+++++++.+|+.+|
T Consensus 79 I~Liy~l~rwL~rR 92 (219)
T PRK13415 79 IFLIYALVKWLNKR 92 (219)
T ss_pred HHHHHHHHHHHHHh
Confidence 33334444566554
No 341
>PF14353 CpXC: CpXC protein
Probab=20.62 E-value=1e+02 Score=23.15 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=23.8
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCC---CCCccccccCCC
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH---STCPICRTGAEP 157 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~CR~~~~~ 157 (237)
.|+-|...+.......+-. ....+-....+... .+||.|...+..
T Consensus 3 tCP~C~~~~~~~v~~~I~~----~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINA----DEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred CCCCCCCeeEEEEEeEEcC----cCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 5777776665542222211 22344445555333 369999886643
No 342
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=20.56 E-value=2.2e+02 Score=21.74 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 026517 25 IISLTIVIVVVLLL 38 (237)
Q Consensus 25 i~~l~~vi~~i~~~ 38 (237)
+..+++++.+++++
T Consensus 22 ~~~L~lVl~lI~~~ 35 (124)
T PRK11486 22 SGALIGIIALILAA 35 (124)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 343
>PHA03286 envelope glycoprotein E; Provisional
Probab=20.54 E-value=1.5e+02 Score=27.83 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=4.8
Q ss_pred HHhcCCCCCccc
Q 026517 140 KWLGSHSTCPIC 151 (237)
Q Consensus 140 ~wl~~~~~CP~C 151 (237)
.||. .-||-=
T Consensus 476 ~~~~--~~~p~~ 485 (492)
T PHA03286 476 AWLA--DGGPAA 485 (492)
T ss_pred hhhh--cCCchh
Confidence 5663 335543
No 344
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=20.52 E-value=77 Score=29.98 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=9.7
Q ss_pred CCccccccccccCC
Q 026517 107 AIECAVCLSNLENE 120 (237)
Q Consensus 107 ~~~C~IC~~~~~~~ 120 (237)
...|+-||+++...
T Consensus 26 ~~yCp~CL~~~p~~ 39 (483)
T PF05502_consen 26 SYYCPNCLFEVPSS 39 (483)
T ss_pred eeECccccccCChh
Confidence 34688888887654
No 345
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=20.48 E-value=42 Score=22.23 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=9.5
Q ss_pred CCccccccCCCC
Q 026517 147 TCPICRTGAEPR 158 (237)
Q Consensus 147 ~CP~CR~~~~~~ 158 (237)
.||+||.++...
T Consensus 10 aCP~~kg~L~~~ 21 (60)
T COG2835 10 ACPVCKGPLVYD 21 (60)
T ss_pred eccCcCCcceEe
Confidence 599999987544
No 346
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.47 E-value=33 Score=28.61 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=28.0
Q ss_pred CCccccccccccCCcc----eeecC----CCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEM----ARVLP----NCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~----~~~l~----~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...||+|-..|..... +++.. -|.| +.=+.+.+..-..||.|-......
T Consensus 5 ~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~---Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 5 KITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPR---YKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred ceECCCCCCeeeeeEEEcCCceEeeecCCCccc---cCCCCCeeeeEEECCCCCCccccc
Confidence 5689999999986510 11100 0332 122555555555799998766544
No 347
>PLN00090 photosystem II reaction center M protein; Provisional
Probab=20.40 E-value=1.9e+02 Score=21.06 Aligned_cols=30 Identities=10% Similarity=0.309 Sum_probs=17.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 15 SLNSKIMVTAIISLTIVIVVVLLLHIYARC 44 (237)
Q Consensus 15 ~~~~~~~ii~i~~l~~vi~~i~~~~~~~~~ 44 (237)
++-..++-.+...+++++-.++++++|++-
T Consensus 70 ~~EVNiLafIATaLFIlIPTaFLLILYVQT 99 (113)
T PLN00090 70 ALEVQFGAYLAVALGTFLPCLFLINLFIQT 99 (113)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555555555666666666666654
No 348
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=20.36 E-value=52 Score=24.62 Aligned_cols=45 Identities=18% Similarity=0.421 Sum_probs=25.8
Q ss_pred CCccccccccccC--CcceeecCCCCCCCchhHHHHHhcCCC--CCccccc
Q 026517 107 AIECAVCLSNLEN--EEMARVLPNCNHTFHAECIDKWLGSHS--TCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~CR~ 153 (237)
...|++|...|.. +...... .|+|.+|..|-.. ..... .|-+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~-~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCV-DCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEET-TTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCC-cCCccccCccCCc-CCCCCCEEChhhHH
Confidence 4589999987632 2223333 5999999998533 11122 4888864
Done!