Query 026517
Match_columns 237
No_of_seqs 259 out of 2101
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 6.7E-18 2.3E-22 121.9 7.6 81 72-157 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 5.9E-17 2E-21 112.5 3.4 68 85-158 6-73 (75)
3 2ect_A Ring finger protein 126 99.6 1.8E-15 6.1E-20 105.7 6.6 55 106-161 14-68 (78)
4 2kiz_A E3 ubiquitin-protein li 99.6 2E-15 7E-20 102.9 6.0 53 106-159 13-65 (69)
5 1iym_A EL5; ring-H2 finger, ub 99.6 1.2E-15 4E-20 99.4 4.3 50 107-156 5-54 (55)
6 2ep4_A Ring finger protein 24; 99.6 4E-15 1.4E-19 102.8 5.8 51 107-158 15-65 (74)
7 2ecl_A Ring-box protein 2; RNF 99.5 1.2E-14 4E-19 102.6 2.1 50 108-157 16-76 (81)
8 2ecm_A Ring finger and CHY zin 99.4 3.8E-14 1.3E-18 92.1 3.7 49 107-156 5-54 (55)
9 2ea6_A Ring finger protein 4; 99.4 5E-14 1.7E-18 95.6 3.7 51 106-157 14-68 (69)
10 3ng2_A RNF4, snurf, ring finge 99.4 3.9E-14 1.3E-18 96.8 3.1 52 107-159 10-65 (71)
11 1v87_A Deltex protein 2; ring- 99.4 8.8E-14 3E-18 103.9 5.1 51 107-158 25-95 (114)
12 2djb_A Polycomb group ring fin 99.4 2.2E-13 7.7E-18 93.5 6.0 51 106-160 14-65 (72)
13 2d8t_A Dactylidin, ring finger 99.4 4.8E-14 1.6E-18 96.7 2.5 50 106-159 14-63 (71)
14 3dpl_R Ring-box protein 1; ubi 99.4 1.3E-13 4.3E-18 102.1 4.1 49 107-156 37-100 (106)
15 2xeu_A Ring finger protein 4; 99.4 6.9E-14 2.4E-18 93.4 2.4 51 107-158 3-57 (64)
16 2ecn_A Ring finger protein 141 99.4 3.2E-13 1.1E-17 92.1 4.5 47 107-158 15-61 (70)
17 2csy_A Zinc finger protein 183 99.4 3.4E-13 1.2E-17 94.7 4.3 48 105-156 13-60 (81)
18 2ecy_A TNF receptor-associated 99.4 7.3E-13 2.5E-17 89.4 5.7 49 106-158 14-63 (66)
19 1chc_A Equine herpes virus-1 r 99.4 2.8E-13 9.5E-18 91.8 3.3 48 107-157 5-52 (68)
20 2yur_A Retinoblastoma-binding 99.4 7.4E-13 2.5E-17 91.5 5.3 49 106-157 14-64 (74)
21 2ysl_A Tripartite motif-contai 99.3 9.9E-13 3.4E-17 90.2 5.6 49 106-158 19-70 (73)
22 2d8s_A Cellular modulator of i 99.3 1.3E-12 4.4E-17 91.8 5.5 51 107-159 15-72 (80)
23 2ct2_A Tripartite motif protei 99.3 1.3E-12 4.6E-17 92.7 5.6 52 106-158 14-69 (88)
24 4ayc_A E3 ubiquitin-protein li 99.3 4.1E-13 1.4E-17 103.9 3.0 47 107-157 53-99 (138)
25 1t1h_A Gspef-atpub14, armadill 99.3 1.5E-12 5.1E-17 90.6 4.4 49 106-158 7-56 (78)
26 4a0k_B E3 ubiquitin-protein li 99.3 2.8E-13 9.5E-18 101.8 0.2 48 108-156 49-111 (117)
27 2egp_A Tripartite motif-contai 99.3 1.6E-12 5.5E-17 90.5 3.4 49 106-158 11-66 (79)
28 2ecw_A Tripartite motif-contai 99.3 4.9E-12 1.7E-16 89.0 5.7 49 106-158 18-72 (85)
29 2ecv_A Tripartite motif-contai 99.3 6.9E-12 2.4E-16 88.2 6.1 48 107-158 19-72 (85)
30 3lrq_A E3 ubiquitin-protein li 99.3 1.7E-12 5.8E-17 94.9 2.6 48 107-158 22-71 (100)
31 2ecj_A Tripartite motif-contai 99.2 8.7E-12 3E-16 81.5 5.4 42 106-151 14-58 (58)
32 2ct0_A Non-SMC element 1 homol 99.2 7.7E-12 2.6E-16 86.3 5.3 49 107-158 15-65 (74)
33 2ysj_A Tripartite motif-contai 99.2 7.1E-12 2.4E-16 83.6 4.9 42 106-151 19-63 (63)
34 2y43_A E3 ubiquitin-protein li 99.2 3.8E-12 1.3E-16 92.7 3.3 47 107-157 22-69 (99)
35 2ckl_A Polycomb group ring fin 99.2 4.7E-12 1.6E-16 93.7 3.4 47 107-157 15-62 (108)
36 3ztg_A E3 ubiquitin-protein li 99.2 6.7E-12 2.3E-16 90.1 4.0 48 105-155 11-60 (92)
37 3fl2_A E3 ubiquitin-protein li 99.2 7.6E-12 2.6E-16 94.8 4.2 47 107-157 52-99 (124)
38 1g25_A CDK-activating kinase a 99.2 9.4E-12 3.2E-16 83.6 4.2 52 107-159 3-57 (65)
39 4ap4_A E3 ubiquitin ligase RNF 99.2 5.2E-12 1.8E-16 96.1 3.1 52 107-159 7-62 (133)
40 1jm7_A BRCA1, breast cancer ty 99.2 1.7E-11 5.9E-16 90.9 4.5 48 107-158 21-71 (112)
41 2ckl_B Ubiquitin ligase protei 99.1 1.5E-11 5.1E-16 97.8 3.2 49 106-157 53-102 (165)
42 2kr4_A Ubiquitin conjugation f 99.1 3.4E-11 1.1E-15 85.5 4.0 49 106-158 13-61 (85)
43 1z6u_A NP95-like ring finger p 99.1 3.2E-11 1.1E-15 94.6 4.0 48 107-158 78-126 (150)
44 2kre_A Ubiquitin conjugation f 99.1 5.7E-11 2E-15 86.9 4.7 50 105-158 27-76 (100)
45 1wgm_A Ubiquitin conjugation f 99.1 7.8E-11 2.7E-15 85.8 5.4 49 106-158 21-70 (98)
46 3l11_A E3 ubiquitin-protein li 99.1 1.6E-11 5.3E-16 91.8 1.6 47 107-157 15-62 (115)
47 1e4u_A Transcriptional repress 99.1 2.3E-10 8E-15 79.8 7.3 54 106-160 10-65 (78)
48 3hct_A TNF receptor-associated 99.1 2.5E-11 8.4E-16 91.3 2.2 49 106-158 17-66 (118)
49 4ap4_A E3 ubiquitin ligase RNF 99.1 2.6E-11 9E-16 92.1 1.5 51 107-158 72-126 (133)
50 1rmd_A RAG1; V(D)J recombinati 99.1 5.1E-11 1.7E-15 89.1 2.6 48 107-158 23-71 (116)
51 1bor_A Transcription factor PM 99.0 7.9E-11 2.7E-15 76.8 3.1 45 107-158 6-50 (56)
52 1jm7_B BARD1, BRCA1-associated 99.0 1E-10 3.5E-15 87.7 3.0 45 107-157 22-67 (117)
53 2vje_A E3 ubiquitin-protein li 99.0 7.9E-11 2.7E-15 79.0 1.9 46 107-156 8-56 (64)
54 2vje_B MDM4 protein; proto-onc 99.0 8.2E-11 2.8E-15 78.7 1.7 48 107-156 7-55 (63)
55 3knv_A TNF receptor-associated 99.0 8.1E-11 2.8E-15 91.3 1.7 48 106-157 30-78 (141)
56 2y1n_A E3 ubiquitin-protein li 99.0 2E-10 6.9E-15 102.4 3.8 48 107-158 332-380 (389)
57 4ic3_A E3 ubiquitin-protein li 98.9 3.6E-10 1.2E-14 77.9 2.4 43 107-157 24-67 (74)
58 3k1l_B Fancl; UBC, ring, RWD, 98.9 4.5E-10 1.6E-14 97.9 1.7 52 106-157 307-373 (381)
59 2c2l_A CHIP, carboxy terminus 98.8 9.9E-10 3.4E-14 93.5 2.9 48 106-157 207-255 (281)
60 2yu4_A E3 SUMO-protein ligase 98.8 1.3E-09 4.3E-14 78.7 2.8 45 107-154 7-59 (94)
61 3hcs_A TNF receptor-associated 98.8 1.1E-09 3.9E-14 87.1 2.2 49 106-158 17-66 (170)
62 2ea5_A Cell growth regulator w 98.8 5.6E-09 1.9E-13 70.8 5.2 45 106-158 14-59 (68)
63 2ecg_A Baculoviral IAP repeat- 98.8 3.1E-09 1.1E-13 73.3 3.5 44 107-158 25-69 (75)
64 2f42_A STIP1 homology and U-bo 98.7 3.6E-09 1.2E-13 85.0 2.9 50 105-158 104-154 (179)
65 1wim_A KIAA0161 protein; ring 98.7 4.6E-09 1.6E-13 75.5 2.5 47 107-154 5-61 (94)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.7 1.7E-08 5.8E-13 66.7 4.1 46 107-156 6-58 (60)
67 2yho_A E3 ubiquitin-protein li 98.6 6.8E-09 2.3E-13 72.4 1.7 44 107-158 18-62 (79)
68 2bay_A PRE-mRNA splicing facto 98.6 1.2E-08 4.1E-13 67.6 0.9 52 107-161 3-54 (61)
69 3htk_C E3 SUMO-protein ligase 98.5 5.4E-08 1.9E-12 82.1 3.8 51 105-158 179-233 (267)
70 3t6p_A Baculoviral IAP repeat- 98.5 2.3E-08 7.9E-13 88.3 1.2 43 107-157 295-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 3.4E-07 1.2E-11 65.7 2.9 46 109-157 3-49 (101)
72 3nw0_A Non-structural maintena 98.1 4.4E-06 1.5E-10 70.0 5.9 49 107-158 180-230 (238)
73 2ko5_A Ring finger protein Z; 96.5 0.0038 1.3E-07 44.0 4.8 50 107-161 28-77 (99)
74 2lri_C Autoimmune regulator; Z 95.3 0.02 7E-07 37.9 4.1 44 107-154 12-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 95.0 0.016 5.6E-07 41.2 3.1 34 107-141 3-36 (101)
76 1wil_A KIAA1045 protein; ring 94.2 0.096 3.3E-06 36.1 5.3 33 107-141 15-47 (89)
77 1ujr_A Hypothetical protein AK 91.9 0.026 8.7E-07 41.3 -0.4 28 207-235 28-55 (110)
78 3v3l_A E3 ubiquitin-protein li 91.6 0.024 8.2E-07 39.5 -0.8 27 208-235 4-30 (85)
79 1f62_A Transcription factor WS 88.4 0.24 8.3E-06 30.5 2.1 44 109-153 2-49 (51)
80 2l5u_A Chromodomain-helicase-D 87.7 0.37 1.3E-05 31.0 2.7 43 107-153 11-57 (61)
81 1mm2_A MI2-beta; PHD, zinc fin 87.6 0.21 7.3E-06 32.2 1.5 44 107-154 9-56 (61)
82 3u5n_A E3 ubiquitin-protein li 87.2 0.13 4.5E-06 41.5 0.4 45 107-155 7-55 (207)
83 2knc_A Integrin alpha-IIB; tra 87.1 1.1 3.9E-05 28.1 4.6 30 18-47 10-39 (54)
84 1we9_A PHD finger family prote 86.7 0.21 7.2E-06 32.3 1.1 46 107-153 6-57 (64)
85 3o36_A Transcription intermedi 86.5 0.2 6.7E-06 39.7 1.0 45 107-155 4-52 (184)
86 2klu_A T-cell surface glycopro 86.4 0.36 1.2E-05 31.6 2.0 14 34-47 24-37 (70)
87 1fp0_A KAP-1 corepressor; PHD 86.4 0.78 2.7E-05 31.9 3.9 44 107-154 25-72 (88)
88 3lqh_A Histone-lysine N-methyl 86.3 0.23 7.9E-06 39.5 1.3 46 108-154 3-63 (183)
89 2k16_A Transcription initiatio 86.3 0.17 6E-06 33.9 0.5 48 107-155 18-69 (75)
90 2jwa_A Receptor tyrosine-prote 85.6 1.3 4.6E-05 26.6 4.1 20 21-40 14-33 (44)
91 2l8s_A Integrin alpha-1; trans 85.3 1.2 4.1E-05 28.0 3.9 28 20-47 9-36 (54)
92 2yql_A PHD finger protein 21A; 85.1 0.18 6E-06 31.9 0.1 43 107-153 9-55 (56)
93 1xwh_A Autoimmune regulator; P 84.5 0.36 1.2E-05 31.6 1.4 44 107-154 8-55 (66)
94 3m62_A Ubiquitin conjugation f 84.1 0.66 2.3E-05 45.7 3.6 49 106-158 890-939 (968)
95 2l43_A N-teminal domain from h 83.8 0.87 3E-05 31.6 3.2 51 107-157 25-78 (88)
96 2e6r_A Jumonji/ARID domain-con 83.6 0.27 9.3E-06 34.5 0.5 47 107-154 16-66 (92)
97 1wem_A Death associated transc 83.0 0.69 2.4E-05 31.0 2.4 47 107-155 16-71 (76)
98 2ro1_A Transcription intermedi 82.9 0.4 1.4E-05 38.2 1.3 43 108-154 3-49 (189)
99 1wev_A Riken cDNA 1110020M19; 82.4 0.28 9.6E-06 34.1 0.2 51 107-157 16-75 (88)
100 2lv9_A Histone-lysine N-methyl 81.5 0.63 2.1E-05 33.0 1.8 45 107-153 28-75 (98)
101 2puy_A PHD finger protein 21A; 81.0 0.33 1.1E-05 31.1 0.1 45 107-155 5-53 (60)
102 2k1a_A Integrin alpha-IIB; sin 80.4 2.1 7.1E-05 25.4 3.5 27 18-44 8-34 (42)
103 1wep_A PHF8; structural genomi 79.4 3.1 0.00011 27.9 4.7 47 107-155 12-64 (79)
104 2lbm_A Transcriptional regulat 79.4 1.9 6.5E-05 32.7 3.9 44 106-153 62-116 (142)
105 2ysm_A Myeloid/lymphoid or mix 79.3 0.64 2.2E-05 33.5 1.2 45 107-152 7-55 (111)
106 3v43_A Histone acetyltransfera 78.6 0.63 2.1E-05 33.7 1.0 45 109-153 63-111 (112)
107 2jwa_A Receptor tyrosine-prote 77.7 3.9 0.00013 24.5 4.1 28 21-48 11-38 (44)
108 2l2t_A Receptor tyrosine-prote 77.6 3.1 0.00011 24.9 3.7 7 20-26 11-17 (44)
109 2ks1_B Epidermal growth factor 76.3 1.2 4.2E-05 26.7 1.7 13 28-40 21-33 (44)
110 2cs3_A Protein C14ORF4, MY039 76.2 1.4 4.9E-05 30.0 2.1 38 107-144 15-52 (93)
111 2jp3_A FXYD domain-containing 76.0 8.6 0.0003 25.0 5.7 41 8-48 4-45 (67)
112 1wew_A DNA-binding family prot 75.7 1.8 6.3E-05 29.1 2.6 47 107-154 16-72 (78)
113 3o70_A PHD finger protein 13; 75.0 0.75 2.6E-05 30.3 0.5 46 106-153 18-66 (68)
114 2ku3_A Bromodomain-containing 74.7 1.6 5.4E-05 29.0 2.0 47 107-153 16-65 (71)
115 2ks1_B Epidermal growth factor 73.3 2.7 9.2E-05 25.2 2.6 20 28-47 18-37 (44)
116 3shb_A E3 ubiquitin-protein li 73.2 0.63 2.1E-05 31.5 -0.3 44 109-153 28-76 (77)
117 2yt5_A Metal-response element- 73.1 0.76 2.6E-05 29.8 0.1 49 107-155 6-62 (66)
118 2ri7_A Nucleosome-remodeling f 71.7 1.8 6.2E-05 33.5 2.1 46 107-154 8-59 (174)
119 3v43_A Histone acetyltransfera 70.8 5.1 0.00018 28.7 4.2 45 107-152 5-62 (112)
120 1z60_A TFIIH basal transcripti 70.2 2.6 9E-05 26.9 2.2 42 109-151 17-58 (59)
121 1wen_A Inhibitor of growth fam 70.1 3.8 0.00013 27.1 3.1 43 107-154 16-65 (71)
122 1weu_A Inhibitor of growth fam 69.2 6.1 0.00021 27.5 4.1 43 107-154 36-85 (91)
123 3ql9_A Transcriptional regulat 68.7 4.7 0.00016 30.0 3.7 44 106-153 56-110 (129)
124 2e6s_A E3 ubiquitin-protein li 68.2 1.2 4.1E-05 30.1 0.3 44 109-153 28-76 (77)
125 3ask_A E3 ubiquitin-protein li 67.7 1.5 5.3E-05 35.8 0.9 44 109-153 176-224 (226)
126 2vpb_A Hpygo1, pygopus homolog 67.3 3.6 0.00012 26.7 2.4 33 107-139 8-41 (65)
127 1afo_A Glycophorin A; integral 66.9 15 0.00053 21.2 4.7 24 20-43 12-35 (40)
128 2k9j_B Integrin beta-3; transm 66.5 17 0.0006 21.4 5.4 30 19-48 8-37 (43)
129 1wfk_A Zinc finger, FYVE domai 65.5 4 0.00014 28.1 2.6 51 107-157 9-66 (88)
130 3asl_A E3 ubiquitin-protein li 65.4 1.5 5.3E-05 28.9 0.4 44 109-153 20-68 (70)
131 3i2d_A E3 SUMO-protein ligase 64.9 4.1 0.00014 35.8 3.1 47 107-157 249-300 (371)
132 1joc_A EEA1, early endosomal a 64.9 3.5 0.00012 30.4 2.3 34 107-140 69-102 (125)
133 3t7l_A Zinc finger FYVE domain 64.2 3.8 0.00013 28.3 2.3 49 107-155 20-74 (90)
134 1y02_A CARP2, FYVE-ring finger 64.1 0.98 3.3E-05 33.3 -0.9 48 107-154 19-66 (120)
135 1z2q_A LM5-1; membrane protein 63.7 4.4 0.00015 27.5 2.5 35 107-141 21-55 (84)
136 2kgg_A Histone demethylase jar 63.4 2.1 7.3E-05 26.3 0.7 44 109-152 4-52 (52)
137 4fo9_A E3 SUMO-protein ligase 63.3 4.6 0.00016 35.3 3.1 46 107-156 215-265 (360)
138 1wee_A PHD finger family prote 63.1 2 7E-05 28.3 0.6 47 106-154 15-66 (72)
139 2yw8_A RUN and FYVE domain-con 62.5 4.6 0.00016 27.3 2.4 35 107-141 19-53 (82)
140 4gne_A Histone-lysine N-methyl 61.4 6.8 0.00023 28.1 3.2 46 107-157 15-65 (107)
141 1x4u_A Zinc finger, FYVE domai 60.3 5.2 0.00018 27.2 2.4 33 107-139 14-46 (84)
142 2zxe_G FXYD10, phospholemman-l 59.6 8.3 0.00028 25.6 3.1 40 9-48 7-47 (74)
143 2rsd_A E3 SUMO-protein ligase 59.3 1.4 4.7E-05 28.9 -0.7 46 107-153 10-64 (68)
144 2ysm_A Myeloid/lymphoid or mix 59.2 1.8 6.1E-05 31.1 -0.2 44 109-153 56-103 (111)
145 1weo_A Cellulose synthase, cat 58.2 23 0.00078 24.5 5.2 50 107-157 16-70 (93)
146 2co8_A NEDD9 interacting prote 57.9 13 0.00044 24.7 4.1 42 107-159 15-56 (82)
147 1vfy_A Phosphatidylinositol-3- 57.3 6.7 0.00023 25.8 2.4 33 108-140 12-44 (73)
148 1wyh_A SLIM 2, skeletal muscle 57.1 8.9 0.0003 24.5 3.0 40 108-157 6-45 (72)
149 2knc_B Integrin beta-3; transm 56.4 29 0.001 23.3 5.6 13 32-44 26-38 (79)
150 2jo1_A Phospholemman; FXYD1, N 55.7 32 0.0011 22.6 5.3 37 12-48 7-44 (72)
151 1dvp_A HRS, hepatocyte growth 55.1 5.3 0.00018 32.2 1.9 35 107-141 161-195 (220)
152 3zyq_A Hepatocyte growth facto 54.7 5.6 0.00019 32.3 2.0 35 107-141 164-198 (226)
153 1x61_A Thyroid receptor intera 54.7 12 0.00042 23.8 3.4 40 107-156 5-44 (72)
154 2kwj_A Zinc finger protein DPF 54.2 1.8 6.2E-05 31.3 -0.9 46 109-155 60-109 (114)
155 2cu8_A Cysteine-rich protein 2 53.4 7.4 0.00025 25.3 2.2 41 107-158 9-49 (76)
156 2dj7_A Actin-binding LIM prote 53.0 14 0.00049 24.4 3.6 39 107-156 15-53 (80)
157 2pv0_B DNA (cytosine-5)-methyl 51.5 10 0.00034 33.5 3.2 46 105-153 91-147 (386)
158 2xb1_A Pygopus homolog 2, B-ce 51.4 7.6 0.00026 27.6 2.1 49 107-155 3-62 (105)
159 3a1b_A DNA (cytosine-5)-methyl 51.3 9.7 0.00033 29.3 2.8 36 105-144 77-114 (159)
160 3fyb_A Protein of unknown func 50.8 5.9 0.0002 27.9 1.3 12 132-143 41-52 (104)
161 2klu_A T-cell surface glycopro 50.7 20 0.0007 23.3 3.8 26 29-54 15-40 (70)
162 1iij_A ERBB-2 receptor protein 50.7 9.3 0.00032 21.6 1.9 21 21-41 10-30 (35)
163 2o35_A Hypothetical protein DU 50.4 6.1 0.00021 27.9 1.3 12 132-143 42-53 (105)
164 2cor_A Pinch protein; LIM doma 50.3 25 0.00087 22.9 4.5 40 107-158 15-54 (79)
165 1zbd_B Rabphilin-3A; G protein 49.8 8 0.00027 28.9 2.0 47 107-153 55-106 (134)
166 2vnf_A ING 4, P29ING4, inhibit 49.6 3.6 0.00012 26.1 0.1 42 107-153 10-58 (60)
167 1iml_A CRIP, cysteine rich int 49.4 7.5 0.00026 25.3 1.7 36 110-156 3-38 (76)
168 2d8z_A Four and A half LIM dom 49.4 15 0.0005 23.3 3.1 39 107-157 5-43 (70)
169 2l9u_A Receptor tyrosine-prote 49.0 30 0.001 19.4 3.8 11 32-42 20-30 (40)
170 1x4k_A Skeletal muscle LIM-pro 48.8 10 0.00034 24.2 2.2 41 108-158 6-46 (72)
171 1x4l_A Skeletal muscle LIM-pro 48.0 15 0.0005 23.5 2.9 41 107-157 5-47 (72)
172 1x62_A C-terminal LIM domain p 48.0 9.3 0.00032 25.1 2.0 38 107-156 15-52 (79)
173 1x63_A Skeletal muscle LIM-pro 47.9 15 0.00051 24.1 3.0 41 108-158 16-56 (82)
174 3c6w_A P28ING5, inhibitor of g 47.0 4.4 0.00015 25.7 0.2 42 107-153 9-57 (59)
175 1x64_A Alpha-actinin-2 associa 46.9 27 0.00092 23.3 4.3 40 107-158 25-64 (89)
176 2l3k_A Rhombotin-2, linker, LI 46.5 13 0.00044 26.7 2.8 37 109-155 10-46 (123)
177 2dar_A PDZ and LIM domain prot 46.0 9.9 0.00034 25.7 1.9 40 107-158 25-64 (90)
178 1nyp_A Pinch protein; LIM doma 46.0 12 0.00042 23.4 2.3 39 107-157 5-43 (66)
179 2d8x_A Protein pinch; LIM doma 45.8 12 0.0004 23.8 2.2 40 107-158 5-44 (70)
180 2d8v_A Zinc finger FYVE domain 44.3 13 0.00044 24.2 2.1 31 106-141 7-38 (67)
181 3mpx_A FYVE, rhogef and PH dom 44.3 4.7 0.00016 35.6 0.0 49 107-155 375-430 (434)
182 3mjh_B Early endosome antigen 44.1 2.8 9.7E-05 23.7 -1.0 14 107-120 5-18 (34)
183 1wig_A KIAA1808 protein; LIM d 43.8 21 0.00073 22.9 3.3 37 108-156 6-42 (73)
184 1g47_A Pinch protein; LIM doma 43.7 11 0.00038 24.3 1.9 42 107-158 11-52 (77)
185 2g6q_A Inhibitor of growth pro 43.4 5.3 0.00018 25.6 0.1 44 107-153 11-59 (62)
186 1zfo_A LAsp-1; LIM domain, zin 43.2 14 0.00049 19.9 1.9 28 108-138 4-31 (31)
187 2gmg_A Hypothetical protein PF 42.8 7.8 0.00027 27.7 1.0 24 128-156 72-95 (105)
188 2d8y_A Eplin protein; LIM doma 41.2 33 0.0011 22.9 4.1 41 107-158 15-55 (91)
189 3o7a_A PHD finger protein 13 v 41.0 4.7 0.00016 24.7 -0.4 41 112-153 8-51 (52)
190 2ehe_A Four and A half LIM dom 40.8 29 0.00099 22.6 3.6 40 108-157 16-55 (82)
191 1x6a_A LIMK-2, LIM domain kina 39.6 19 0.00065 23.5 2.5 38 108-157 16-53 (81)
192 1x68_A FHL5 protein; four-and- 39.4 26 0.00087 22.6 3.1 40 108-157 6-47 (76)
193 1a7i_A QCRP2 (LIM1); LIM domai 38.6 8.7 0.0003 25.3 0.6 40 108-158 8-47 (81)
194 1wd2_A Ariadne-1 protein homol 38.4 8.4 0.00029 24.5 0.5 36 108-143 7-46 (60)
195 2cur_A Skeletal muscle LIM-pro 38.4 18 0.0006 22.8 2.1 37 108-156 6-42 (69)
196 3f6q_B LIM and senescent cell 38.3 15 0.00051 23.2 1.8 42 107-158 11-52 (72)
197 2jmo_A Parkin; IBR, E3 ligase, 37.4 3.5 0.00012 27.8 -1.5 19 128-148 55-73 (80)
198 2k1k_A Ephrin type-A receptor 36.7 60 0.002 18.5 4.4 9 18-26 10-18 (38)
199 2kog_A Vesicle-associated memb 36.3 34 0.0012 24.8 3.6 6 19-24 97-102 (119)
200 4hkr_A Calcium release-activat 35.6 42 0.0014 26.8 4.2 36 23-58 151-186 (214)
201 2l4z_A DNA endonuclease RBBP8, 35.5 16 0.00054 26.5 1.7 39 107-156 61-99 (123)
202 2jmi_A Protein YNG1, ING1 homo 35.4 11 0.00038 26.0 0.8 44 107-153 26-75 (90)
203 2cuq_A Four and A half LIM dom 34.7 26 0.0009 22.7 2.6 37 108-156 16-52 (80)
204 1v6g_A Actin binding LIM prote 34.1 19 0.00065 23.5 1.8 39 108-158 16-54 (81)
205 2ct7_A Ring finger protein 31; 31.5 3.5 0.00012 28.1 -2.4 26 126-151 46-73 (86)
206 2zet_C Melanophilin; complex, 30.6 23 0.0008 26.9 2.0 45 107-153 68-116 (153)
207 2egq_A FHL1 protein; LIM domai 30.3 29 0.001 22.2 2.2 40 108-157 16-58 (77)
208 2das_A Zinc finger MYM-type pr 30.1 1.1E+02 0.0036 19.5 4.6 35 107-141 20-55 (62)
209 2dlo_A Thyroid receptor-intera 30.0 23 0.0008 23.1 1.7 39 107-157 15-53 (81)
210 1x3h_A Leupaxin; paxillin fami 28.9 26 0.0009 22.7 1.8 39 108-158 16-54 (80)
211 2pk7_A Uncharacterized protein 28.6 14 0.00048 24.2 0.3 20 139-158 2-21 (69)
212 2jny_A Uncharacterized BCR; st 27.2 13 0.00044 24.3 -0.0 20 139-158 4-23 (67)
213 3kqi_A GRC5, PHD finger protei 26.7 23 0.0008 23.2 1.2 45 108-154 11-61 (75)
214 3kv5_D JMJC domain-containing 26.4 14 0.00048 33.6 0.1 47 107-155 37-89 (488)
215 2jvx_A NF-kappa-B essential mo 26.4 15 0.00051 19.7 0.1 10 146-155 4-13 (28)
216 1j2o_A FLIN2, fusion of rhombo 26.2 36 0.0012 23.9 2.3 11 130-140 52-62 (114)
217 2cup_A Skeletal muscle LIM-pro 26.0 49 0.0017 22.3 2.9 10 109-118 7-16 (101)
218 1m3v_A FLIN4, fusion of the LI 25.6 45 0.0015 23.7 2.7 49 108-158 33-82 (122)
219 2fiy_A Protein FDHE homolog; F 25.1 6.4 0.00022 33.7 -2.4 47 107-154 182-231 (309)
220 2ww9_C Protein transport prote 24.9 41 0.0014 23.0 2.2 16 30-45 70-85 (87)
221 2lat_A Dolichyl-diphosphooligo 24.8 1E+02 0.0035 17.5 4.2 22 21-42 8-29 (37)
222 1x4i_A Inhibitor of growth pro 24.1 46 0.0016 21.6 2.3 46 107-155 6-56 (70)
223 2iyb_E Testin, TESS, TES; LIM 23.6 36 0.0012 21.2 1.6 39 109-157 4-44 (65)
224 1rut_X Flinc4, fusion protein 23.5 32 0.0011 26.6 1.6 38 109-156 71-108 (188)
225 3arc_H Photosystem II reaction 23.2 1.2E+02 0.0039 19.5 3.9 19 17-35 24-42 (65)
226 2xjy_A Rhombotin-2; oncoprotei 22.3 43 0.0015 23.9 2.1 49 107-157 29-78 (131)
227 2ku7_A MLL1 PHD3-CYP33 RRM chi 22.1 97 0.0033 21.8 4.0 25 129-153 8-43 (140)
228 1loi_A Cyclic 3',5'-AMP specif 21.6 4.6 0.00016 20.5 -2.3 11 132-142 6-16 (26)
229 2rgt_A Fusion of LIM/homeobox 21.3 46 0.0016 25.1 2.1 10 147-156 95-104 (169)
230 2k1e_A Water soluble analogue 20.9 95 0.0033 21.2 3.6 30 12-42 61-90 (103)
231 1rkl_A Dolichyl-diphosphooligo 20.4 1.2E+02 0.0041 17.1 3.2 14 28-41 15-28 (36)
232 3arc_M Photosystem II reaction 20.2 1.1E+02 0.0039 17.2 3.0 15 29-43 14-28 (36)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.73 E-value=6.7e-18 Score=121.90 Aligned_cols=81 Identities=30% Similarity=0.663 Sum_probs=68.6
Q ss_pred CCCCCCCCCCHHHHhhCCceeeecCCCCCCCCCCCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccc
Q 026517 72 TPPPPKTGLDPTVIAALPIFVYKQTDGGQDDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPIC 151 (237)
Q Consensus 72 ~~~~~~~~~~~~~i~~lp~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 151 (237)
.......+++++.++.||.+.+....... .....|+||++.|..++.+..+| |||.||..||..|+..+.+||+|
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~~~----~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~C 83 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHGAV----GQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVC 83 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCSSS----SSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTT
T ss_pred CCCcCCCCCCHHHHHhCCCeeeccccccc----CCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCc
Confidence 34566778999999999999987654332 23678999999999988888998 99999999999999999999999
Q ss_pred cccCCC
Q 026517 152 RTGAEP 157 (237)
Q Consensus 152 R~~~~~ 157 (237)
|.++..
T Consensus 84 r~~~~~ 89 (91)
T 2l0b_A 84 RCMFPP 89 (91)
T ss_dssp CCBSSC
T ss_pred CccCCC
Confidence 998854
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.9e-17 Score=112.52 Aligned_cols=68 Identities=41% Similarity=1.009 Sum_probs=56.8
Q ss_pred HhhCCceeeecCCCCCCCCCCCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 85 IAALPIFVYKQTDGGQDDGLAAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 85 i~~lp~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
++.||.+.+...... .....|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+++...
T Consensus 6 i~~lp~~~~~~~~~~-----~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQ-----SEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSSCS-----SSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCcccc-----CCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 567888888654322 22568999999999999899998 999999999999999999999999988553
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=1.8e-15 Score=105.67 Aligned_cols=55 Identities=40% Similarity=0.943 Sum_probs=48.7
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRPQP 161 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 161 (237)
....|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+......
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 4678999999999988888898 999999999999999999999999998765433
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=102.89 Aligned_cols=53 Identities=45% Similarity=0.980 Sum_probs=47.5
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRP 159 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 159 (237)
....|+||++.|..+..+..++ |||.||..||..|+..+.+||+||..+....
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 3568999999998888888898 9999999999999999999999999986653
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.58 E-value=1.2e-15 Score=99.38 Aligned_cols=50 Identities=64% Similarity=1.311 Sum_probs=45.3
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
...|+||++.|..++.+..++.|||.||..||..|+..+.+||+||+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 56899999999998888888679999999999999999999999999774
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4e-15 Score=102.82 Aligned_cols=51 Identities=33% Similarity=0.843 Sum_probs=46.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||.++...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 568999999999998888888 999999999999999889999999988654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-14 Score=102.56 Aligned_cols=50 Identities=30% Similarity=0.794 Sum_probs=40.9
Q ss_pred CccccccccccC-----------CcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 108 IECAVCLSNLEN-----------EEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~-----------~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
..|+||++.|.. .+.++.++.|+|.||..||..||..+.+||+||+++..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 468888888854 34455665699999999999999999999999998753
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.45 E-value=3.8e-14 Score=92.08 Aligned_cols=49 Identities=31% Similarity=0.829 Sum_probs=42.0
Q ss_pred CCccccccccccCC-cceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENE-EMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
...|+||++.|... ..+..++ |||.||..||..|+..+.+||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 56899999999654 3456777 9999999999999998899999999774
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5e-14 Score=95.59 Aligned_cols=51 Identities=24% Similarity=0.701 Sum_probs=43.0
Q ss_pred CCCccccccccccCC----cceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 106 AAIECAVCLSNLENE----EMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
....|+||++.|..+ ..+..++ |||.||..||..|+..+.+||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 356899999999864 3346677 99999999999999989999999998753
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.43 E-value=3.9e-14 Score=96.77 Aligned_cols=52 Identities=23% Similarity=0.696 Sum_probs=44.3
Q ss_pred CCccccccccccCC----cceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCC
Q 026517 107 AIECAVCLSNLENE----EMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 159 (237)
...|+||++.|..+ ..+..++ |||.||..||..|+..+.+||+||.++....
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 56899999998764 4446776 9999999999999999999999999987543
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.43 E-value=8.8e-14 Score=103.93 Aligned_cols=51 Identities=25% Similarity=0.664 Sum_probs=41.3
Q ss_pred CCccccccccccCCc---------------ceeecCCCCCCCchhHHHHHh-----cCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEE---------------MARVLPNCNHTFHAECIDKWL-----GSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~CR~~~~~~ 158 (237)
+..|+||++.|..+. .+..++ |+|.||..||..|+ ..+.+||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 347999999997653 333666 99999999999999 4567899999988654
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.2e-13 Score=93.54 Aligned_cols=51 Identities=25% Similarity=0.570 Sum_probs=43.7
Q ss_pred CCCccccccccccCCcceeec-CCCCCCCchhHHHHHhcCCCCCccccccCCCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVL-PNCNHTFHAECIDKWLGSHSTCPICRTGAEPRPQ 160 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~~ 160 (237)
....|+||++.+..+ ..+ + |||.||..||..|+..+..||+||.++.....
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYLIDA---TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCCSSC---EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHHHCc---CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 467899999999876 454 6 99999999999999888999999999866533
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.8e-14 Score=96.68 Aligned_cols=50 Identities=28% Similarity=0.565 Sum_probs=43.5
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRP 159 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 159 (237)
....|+||++.+..+ ..++ |||.||..||..|+..+..||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 356899999999876 6677 9999999999999999999999999986543
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.40 E-value=1.3e-13 Score=102.11 Aligned_cols=49 Identities=31% Similarity=0.694 Sum_probs=41.3
Q ss_pred CCccccccccccCCc---------------ceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEE---------------MARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
+..|+||++.|..+- .+..++ |+|.||..||..||..+.+||+||+++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 347999999998651 255566 9999999999999999999999999864
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.40 E-value=6.9e-14 Score=93.45 Aligned_cols=51 Identities=24% Similarity=0.707 Sum_probs=43.5
Q ss_pred CCccccccccccCC----cceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENE----EMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+||++.+..+ ..+..++ |||.||..||..|+..+.+||+||.++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 46899999999764 3446676 999999999999999999999999988654
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=92.11 Aligned_cols=47 Identities=40% Similarity=1.026 Sum_probs=41.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+||++.+.. ..++ |||.||..||..|+..+.+||+||.++...
T Consensus 15 ~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 5689999999876 5677 999999999999999999999999988654
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.4e-13 Score=94.69 Aligned_cols=48 Identities=23% Similarity=0.567 Sum_probs=42.5
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
.....|+||++.|..+ .+++ |||.||..||..|+.....||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3467899999999876 5677 9999999999999998889999999885
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=7.3e-13 Score=89.35 Aligned_cols=49 Identities=22% Similarity=0.540 Sum_probs=41.6
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHh-cCCCCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL-GSHSTCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~CR~~~~~~ 158 (237)
....|+||++.+..+ ..++ |||.||..||..|+ ..+..||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 357899999999887 4466 99999999999999 4566899999988654
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.36 E-value=2.8e-13 Score=91.82 Aligned_cols=48 Identities=38% Similarity=0.949 Sum_probs=41.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|+||++.+..+ +..++ |||.||..||..|+..+.+||+||.++..
T Consensus 5 ~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45799999998764 46677 99999999999999988999999998853
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.35 E-value=7.4e-13 Score=91.49 Aligned_cols=49 Identities=27% Similarity=0.678 Sum_probs=41.2
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC--CCCccccccCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH--STCPICRTGAEP 157 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~CR~~~~~ 157 (237)
....|+||++.|..+ ..++.|||.||..||..|+..+ ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 467899999999987 5565599999999999999765 689999997543
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=9.9e-13 Score=90.24 Aligned_cols=49 Identities=27% Similarity=0.718 Sum_probs=41.5
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhc---CCCCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG---SHSTCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~CR~~~~~~ 158 (237)
....|+||++.+..+ ..++ |||.||..||..|+. ....||+||.++...
T Consensus 19 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 356899999999876 5667 999999999999996 455899999988654
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=91.77 Aligned_cols=51 Identities=24% Similarity=0.671 Sum_probs=42.6
Q ss_pred CCccccccccccCCcceeecCCCC-----CCCchhHHHHHhcCC--CCCccccccCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCN-----HTFHAECIDKWLGSH--STCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~~--~~CP~CR~~~~~~~ 159 (237)
...|.||++++..++.+ ++| |+ |.||..||++||..+ .+||+||..+....
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 56899999999876665 578 96 999999999999765 48999999886543
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=92.72 Aligned_cols=52 Identities=29% Similarity=0.811 Sum_probs=43.5
Q ss_pred CCCccccccccccCCcc-eeecCCCCCCCchhHHHHHhcCC---CCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEM-ARVLPNCNHTFHAECIDKWLGSH---STCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~CR~~~~~~ 158 (237)
....|+||++.|...+. ...++ |||.||..||..|+..+ ..||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 35789999999988543 46777 99999999999999765 6899999987654
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.33 E-value=4.1e-13 Score=103.87 Aligned_cols=47 Identities=30% Similarity=0.880 Sum_probs=41.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
+..|+||++.|..+ ..+| |||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 35799999999876 6777 99999999999999999999999998854
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.30 E-value=1.5e-12 Score=90.62 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=42.7
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcC-CCCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-HSTCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~~~ 158 (237)
....|+||++.|..+ ..++ |||.||..||..|+.. +.+||+||.++...
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 467899999999987 5677 9999999999999986 77899999988654
No 26
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.29 E-value=2.8e-13 Score=101.80 Aligned_cols=48 Identities=31% Similarity=0.708 Sum_probs=0.0
Q ss_pred CccccccccccCCc---------------ceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 108 IECAVCLSNLENEE---------------MARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 108 ~~C~IC~~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
..|+||++.|..+. .+..++ |+|.||..||..||..+.+||+||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 47999999997532 222345 9999999999999999999999999864
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.27 E-value=1.6e-12 Score=90.48 Aligned_cols=49 Identities=27% Similarity=0.630 Sum_probs=42.0
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcC-------CCCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-------HSTCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-------~~~CP~CR~~~~~~ 158 (237)
....|+||++.|..+ ..++ |||.||..||..|+.. ...||+||.++...
T Consensus 11 ~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 357899999999887 5677 9999999999999976 56899999988653
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=4.9e-12 Score=88.97 Aligned_cols=49 Identities=31% Similarity=0.689 Sum_probs=42.2
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcC------CCCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS------HSTCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~CR~~~~~~ 158 (237)
....|+||++.|..+ ..++ |||.||..||..|+.. ...||+||.++...
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 356899999999887 5677 9999999999999976 66899999988654
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=6.9e-12 Score=88.17 Aligned_cols=48 Identities=31% Similarity=0.812 Sum_probs=41.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC------CCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS------HSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~CR~~~~~~ 158 (237)
...|+||++.+..+ ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 19 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 19 EVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 56899999999877 5677 9999999999999976 67899999988654
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.25 E-value=1.7e-12 Score=94.92 Aligned_cols=48 Identities=29% Similarity=0.825 Sum_probs=41.3
Q ss_pred CCccccccccccCCcceee-cCCCCCCCchhHHHHHhcCC-CCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARV-LPNCNHTFHAECIDKWLGSH-STCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~-l~~C~H~fh~~Ci~~wl~~~-~~CP~CR~~~~~~ 158 (237)
...|+||++.|..+ .. ++ |||.||..||..|+... ..||+||.++...
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 45799999999876 45 66 99999999999999877 6899999998543
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.7e-12 Score=81.52 Aligned_cols=42 Identities=33% Similarity=0.988 Sum_probs=35.9
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHh---cCCCCCccc
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL---GSHSTCPIC 151 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~~~CP~C 151 (237)
....|+||++.+..+ ..++ |||.||..||..|+ ..+..||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 356899999999987 5677 99999999999995 456689998
No 32
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=7.7e-12 Score=86.28 Aligned_cols=49 Identities=24% Similarity=0.564 Sum_probs=41.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC--CCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH--STCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~CR~~~~~~ 158 (237)
..+|+||.+.+..++.+. .|+|.||..||.+||+.+ .+||+||.++...
T Consensus 15 i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 568999999998774443 499999999999999877 7899999887544
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=7.1e-12 Score=83.59 Aligned_cols=42 Identities=29% Similarity=0.791 Sum_probs=36.4
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhc---CCCCCccc
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG---SHSTCPIC 151 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~C 151 (237)
....|+||++.+..+ ..++ |||.||..||..|+. ....||+|
T Consensus 19 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 356899999999987 6677 999999999999997 45589998
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.22 E-value=3.8e-12 Score=92.67 Aligned_cols=47 Identities=23% Similarity=0.761 Sum_probs=41.3
Q ss_pred CCccccccccccCCcceeec-CCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVL-PNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|+||++.|..+ ..+ + |||.||..||..|+..+..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc---CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45799999999876 455 6 99999999999999988999999998864
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.21 E-value=4.7e-12 Score=93.70 Aligned_cols=47 Identities=26% Similarity=0.706 Sum_probs=41.4
Q ss_pred CCccccccccccCCcceeec-CCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVL-PNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|+||++.|..+ ..+ + |||.||..||..|+..+..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDA---TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSE---EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCc---CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 56899999999876 454 6 99999999999999988999999998754
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.21 E-value=6.7e-12 Score=90.05 Aligned_cols=48 Identities=27% Similarity=0.704 Sum_probs=40.6
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC--CCCccccccC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH--STCPICRTGA 155 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~CR~~~ 155 (237)
.....|+||++.|..+ ..++.|||.||..||..|+... ..||+||.++
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3467899999999987 5665599999999999999643 5899999986
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.21 E-value=7.6e-12 Score=94.84 Aligned_cols=47 Identities=21% Similarity=0.604 Sum_probs=40.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC-CCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS-TCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~CR~~~~~ 157 (237)
...|+||++.|..+ ..++ |||.||..||..|+..+. .||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45799999999987 6677 999999999999997544 89999998865
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=9.4e-12 Score=83.57 Aligned_cols=52 Identities=25% Similarity=0.532 Sum_probs=41.1
Q ss_pred CCccccccc-cccCCccee-ecCCCCCCCchhHHHHHhcC-CCCCccccccCCCCC
Q 026517 107 AIECAVCLS-NLENEEMAR-VLPNCNHTFHAECIDKWLGS-HSTCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~-~~~~~~~~~-~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~~~~ 159 (237)
+..|+||++ .+..+.... .++ |||.||..||..|+.. ...||+||.++....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 457999999 787775433 456 9999999999999754 467999999886543
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.20 E-value=5.2e-12 Score=96.09 Aligned_cols=52 Identities=23% Similarity=0.696 Sum_probs=44.4
Q ss_pred CCccccccccccCC----cceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCC
Q 026517 107 AIECAVCLSNLENE----EMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 159 (237)
...|+||++.|..+ ..+..++ |||.||..||..|+..+.+||+||..+....
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 56899999999765 4446777 9999999999999999999999999886543
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.7e-11 Score=90.88 Aligned_cols=48 Identities=29% Similarity=0.770 Sum_probs=40.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC---CCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS---TCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~---~CP~CR~~~~~~ 158 (237)
...|+||++.+..+ ..++ |||.||..||..|+..+. .||+||.++...
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 35799999999877 5577 999999999999997654 899999988654
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.14 E-value=1.5e-11 Score=97.76 Aligned_cols=49 Identities=35% Similarity=0.726 Sum_probs=41.0
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcC-CCCCccccccCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-HSTCPICRTGAEP 157 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~~ 157 (237)
....|+||++.|..+ +..++ |||.||..||..|+.. +..||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 356899999999976 33346 9999999999999986 7789999998854
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.12 E-value=3.4e-11 Score=85.46 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=43.8
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
....|+||++.|..+ .+++ |||.|++.||..|+..+.+||+||.++...
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 467899999999998 7787 999999999999999888999999987543
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.11 E-value=3.2e-11 Score=94.61 Aligned_cols=48 Identities=19% Similarity=0.563 Sum_probs=41.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC-CCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS-TCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~CR~~~~~~ 158 (237)
...|+||++.|..+ ..++ |||.||..||..|+.... .||+||.++...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 46899999999887 5677 999999999999997654 899999998665
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.10 E-value=5.7e-11 Score=86.86 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=44.5
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
.....|+||++.|..| .+++ |||.|++.||..|+..+.+||+||.++...
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 3467899999999999 7787 999999999999999888999999988653
No 45
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.10 E-value=7.8e-11 Score=85.82 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=43.8
Q ss_pred CCCccccccccccCCcceeecCCCC-CCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCN-HTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
....|+||++.|.+| ++++ || |.|++.||..|+..+.+||+||.++...
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 367899999999998 6777 99 9999999999999888999999988654
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.10 E-value=1.6e-11 Score=91.84 Aligned_cols=47 Identities=30% Similarity=0.760 Sum_probs=41.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC-CCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-HSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~~ 157 (237)
...|+||++.|..+ ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 56899999999987 6677 9999999999999976 5689999998853
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.10 E-value=2.3e-10 Score=79.79 Aligned_cols=54 Identities=22% Similarity=0.556 Sum_probs=41.2
Q ss_pred CCCccccccccccCCcce-eecCCCCCCCchhHHHHHhc-CCCCCccccccCCCCCC
Q 026517 106 AAIECAVCLSNLENEEMA-RVLPNCNHTFHAECIDKWLG-SHSTCPICRTGAEPRPQ 160 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~-~~l~~C~H~fh~~Ci~~wl~-~~~~CP~CR~~~~~~~~ 160 (237)
.+..|+||++.+...+.. ..++ |||.||..|+..++. ....||.||+++.....
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 356899999998654322 2234 999999999999884 45689999999876544
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.09 E-value=2.5e-11 Score=91.27 Aligned_cols=49 Identities=29% Similarity=0.596 Sum_probs=42.0
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC-CCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS-TCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~CR~~~~~~ 158 (237)
....|+||++.+..+ ..++ |||.||..||..|+.... .||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 367899999999887 5677 999999999999997665 899999988553
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.07 E-value=2.6e-11 Score=92.14 Aligned_cols=51 Identities=24% Similarity=0.715 Sum_probs=42.9
Q ss_pred CCccccccccccCC----cceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENE----EMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+||++.|..+ .....++ |||.||..||..|+..+.+||+||.++...
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 56899999998764 2335666 999999999999999999999999988654
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.05 E-value=5.1e-11 Score=89.14 Aligned_cols=48 Identities=33% Similarity=0.651 Sum_probs=41.5
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC-CCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-HSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~CR~~~~~~ 158 (237)
...|+||++.+..+ ..++ |||.||..||..|+.. ..+||+||.++...
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 45799999999877 5577 9999999999999976 67899999988654
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=7.9e-11 Score=76.84 Aligned_cols=45 Identities=27% Similarity=0.686 Sum_probs=38.5
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+||++.|..+ ..++ |||.||..||..| ...||+||..+...
T Consensus 6 ~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 56899999999987 6787 9999999999774 56899999988653
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1e-10 Score=87.72 Aligned_cols=45 Identities=31% Similarity=0.772 Sum_probs=39.4
Q ss_pred CCccccccccccCCcceeec-CCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVL-PNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|+||++.|..+ ..+ + |||.||..||..|+. ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 45799999999887 566 6 999999999999997 789999998743
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.01 E-value=7.9e-11 Score=79.02 Aligned_cols=46 Identities=22% Similarity=0.532 Sum_probs=39.2
Q ss_pred CCccccccccccCCcceeec--CCCCCC-CchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVL--PNCNHT-FHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l--~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
...|.||++.+... ..+ | |||. ||..|+..|+..+..||+||+++.
T Consensus 8 ~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred cCCCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45799999987655 444 8 9998 899999999988889999999884
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.00 E-value=8.2e-11 Score=78.70 Aligned_cols=48 Identities=17% Similarity=0.403 Sum_probs=39.1
Q ss_pred CCccccccccccCCcceeecCCCCCC-CchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHT-FHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
...|.||++...... +..+| |||. ||..|+..|...+..||+||.++.
T Consensus 7 ~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 568999999866541 12237 9997 999999999988889999999884
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.99 E-value=8.1e-11 Score=91.34 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=41.3
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC-CCccccccCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS-TCPICRTGAEP 157 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~-~CP~CR~~~~~ 157 (237)
....|+||++.|..+ ..++ |||.||..||..|+.... .||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 467899999999988 5566 999999999999997654 89999998743
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.98 E-value=2e-10 Score=102.39 Aligned_cols=48 Identities=25% Similarity=0.729 Sum_probs=41.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhc-CCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG-SHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~CR~~~~~~ 158 (237)
...|+||++.+..+ ..+| |||.||..|+..|+. ...+||+||.++...
T Consensus 332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 35899999998765 6777 999999999999998 678999999988653
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.92 E-value=3.6e-10 Score=77.92 Aligned_cols=43 Identities=23% Similarity=0.577 Sum_probs=37.1
Q ss_pred CCccccccccccCCcceeecCCCCCC-CchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHT-FHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|+||++.+..+ ..+| |||. ||..|+..| ..||+||.++..
T Consensus 24 ~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 35799999998765 6777 9999 999999998 889999998854
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.86 E-value=4.5e-10 Score=97.86 Aligned_cols=52 Identities=19% Similarity=0.639 Sum_probs=40.1
Q ss_pred CCCccccccccccC----CcceeecCCCCCCCchhHHHHHhcCC-----------CCCccccccCCC
Q 026517 106 AAIECAVCLSNLEN----EEMARVLPNCNHTFHAECIDKWLGSH-----------STCPICRTGAEP 157 (237)
Q Consensus 106 ~~~~C~IC~~~~~~----~~~~~~l~~C~H~fh~~Ci~~wl~~~-----------~~CP~CR~~~~~ 157 (237)
...+|+||++.+.. ++.....+.|+|.||..||..||++. .+||+||.++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 46789999999886 22323334599999999999999642 469999998853
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.84 E-value=9.9e-10 Score=93.50 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=41.8
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC-CCCccccccCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH-STCPICRTGAEP 157 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~CR~~~~~ 157 (237)
....|+||++.|..| +++| |||.||+.||..|+..+ .+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 467899999999998 6787 99999999999999754 459999998854
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=1.3e-09 Score=78.68 Aligned_cols=45 Identities=20% Similarity=0.538 Sum_probs=38.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC------CCCcc--cccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH------STCPI--CRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~------~~CP~--CR~~ 154 (237)
...|+||++.|..| ++++.|||.|++.||..|+..+ .+||+ |+..
T Consensus 7 ~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 57899999999988 5563499999999999999754 48999 9865
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.81 E-value=1.1e-09 Score=87.11 Aligned_cols=49 Identities=29% Similarity=0.592 Sum_probs=41.7
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC-CCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH-STCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~CR~~~~~~ 158 (237)
....|+||++.|..+ ..++ |||.||..||..|+... ..||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 467899999999987 5577 99999999999999654 4899999988553
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=5.6e-09 Score=70.78 Aligned_cols=45 Identities=31% Similarity=0.755 Sum_probs=37.3
Q ss_pred CCCccccccccccCCcceeecCCCCCC-CchhHHHHHhcCCCCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHT-FHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
....|.||++..... ..+| |||. ||..|+.. ...||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~---v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNW---VLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CSSCCSSSSSSCCCC---EETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCcCcCCCCE---EEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 356899999987654 7788 9998 99999984 47899999988653
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=3.1e-09 Score=73.31 Aligned_cols=44 Identities=23% Similarity=0.589 Sum_probs=36.4
Q ss_pred CCccccccccccCCcceeecCCCCCC-CchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHT-FHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+||++.+..+ ..+| |||. ||..|+.. ...||+||.++...
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 34799999998776 6677 9999 99999965 37899999988653
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.74 E-value=3.6e-09 Score=85.00 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=42.7
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC-CCCccccccCCCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH-STCPICRTGAEPR 158 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~CR~~~~~~ 158 (237)
.....|+||++.|..| .++| |||.|++.||..|+..+ .+||+||.++...
T Consensus 104 p~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 3478999999999998 6777 99999999999999764 4699999988543
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=4.6e-09 Score=75.52 Aligned_cols=47 Identities=23% Similarity=0.668 Sum_probs=39.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC--------CCCCcc--cccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS--------HSTCPI--CRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~--CR~~ 154 (237)
...|+||++.+..++.+...+ |||.||..|+..++.. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 568999999998876666666 9999999999999853 236999 9987
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.67 E-value=1.7e-08 Score=66.66 Aligned_cols=46 Identities=28% Similarity=0.692 Sum_probs=36.0
Q ss_pred CCccccccccccCCcceeecCCCC--C---CCchhHHHHHhcC--CCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCN--H---TFHAECIDKWLGS--HSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~--H---~fh~~Ci~~wl~~--~~~CP~CR~~~~ 156 (237)
...|.||+++... . ..+| |. | .||..||.+|+.. +.+||+||..+.
T Consensus 6 ~~~CrIC~~~~~~--~-l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGN--E-RFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSC--C-CCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCC--c-eecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 5689999998433 2 3577 65 4 9999999999954 568999998774
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.64 E-value=6.8e-09 Score=72.43 Aligned_cols=44 Identities=34% Similarity=0.779 Sum_probs=36.6
Q ss_pred CCccccccccccCCcceeecCCCCCC-CchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHT-FHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|.||++.+... ..+| |||. ||..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~~---v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCE---EEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcE---EEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 34799999987765 7788 9998 999999877 4899999988653
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.56 E-value=1.2e-08 Score=67.64 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=43.3
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRPQP 161 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 161 (237)
...|+||++.|.++ .+++.|||+|.+.||..|+..+.+||+++.++......
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 35799999999987 55523999999999999998888999999998765443
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.51 E-value=5.4e-08 Score=82.11 Aligned_cols=51 Identities=24% Similarity=0.500 Sum_probs=41.0
Q ss_pred CCCCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC--CCCcc--ccccCCCC
Q 026517 105 AAAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH--STCPI--CRTGAEPR 158 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~--CR~~~~~~ 158 (237)
.....|+||++.|..| |..+. |||.||+.||..|+..+ ..||+ ||..+...
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 3467899999999988 32235 99999999999999764 46999 99977543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.49 E-value=2.3e-08 Score=88.26 Aligned_cols=43 Identities=30% Similarity=0.706 Sum_probs=37.3
Q ss_pred CCccccccccccCCcceeecCCCCCC-CchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHT-FHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|+||++.+..+ ..+| |||. ||..|+..| ..||+||.++..
T Consensus 295 ~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 45799999998876 6778 9999 999999988 789999998854
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.28 E-value=3.4e-07 Score=65.72 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=37.4
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHh-cCCCCCccccccCCC
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL-GSHSTCPICRTGAEP 157 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~CR~~~~~ 157 (237)
.|++|--.+. ...+++| |+|+||++|+..|. +..++||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888866655 3468888 99999999999997 556789999998843
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.07 E-value=4.4e-06 Score=69.96 Aligned_cols=49 Identities=24% Similarity=0.562 Sum_probs=39.6
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC--CCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS--TCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~CR~~~~~~ 158 (237)
...|.||.+....+..+ +.|+|.||..|+..|++.+. .||.|+......
T Consensus 180 i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 56899999999877332 34999999999999997654 899999876444
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.48 E-value=0.0038 Score=44.03 Aligned_cols=50 Identities=22% Similarity=0.523 Sum_probs=38.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRPQP 161 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~~~ 161 (237)
-..|-.|.-.... .+....|.+|..||...|.....||+|..++..+...
T Consensus 28 ~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 4579999877552 2322349999999999999999999999999766433
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.29 E-value=0.02 Score=37.87 Aligned_cols=44 Identities=25% Similarity=0.524 Sum_probs=32.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCcccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~ 154 (237)
...|.||.+. ++.+.-- .|...||..|+.+.|.... .||.|...
T Consensus 12 ~~~C~vC~~~---~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG---TDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC---TTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC---CeEEECC-CCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4579999854 4444443 4889999999998886543 69999654
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.95 E-value=0.016 Score=41.20 Aligned_cols=34 Identities=15% Similarity=0.541 Sum_probs=25.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHH
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKW 141 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 141 (237)
+..|.||.+.+..+....-+. |+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 457999998754443344476 9999999999983
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.22 E-value=0.096 Score=36.12 Aligned_cols=33 Identities=24% Similarity=0.564 Sum_probs=22.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHH
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKW 141 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 141 (237)
+..|.||-. +...+....-- |+-+||..|+.+.
T Consensus 15 D~~C~VC~~-~t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 15 DEMCDVCEV-WTAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCTTTCC-CCSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CcccCcccc-ccccceecccc-ccccccHhhcccc
Confidence 568999953 33332222222 8899999999997
No 77
>1ujr_A Hypothetical protein AK012080; WWE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.289.1.1
Probab=91.87 E-value=0.026 Score=41.30 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=23.0
Q ss_pred cccCcccccccCCcccCCcccccchhhhh
Q 026517 207 SRLSSFRRILNGDWDRSSRRIQFEIADLE 235 (237)
Q Consensus 207 ~~~~~~~~~~~~~w~r~~~r~~~~~~~~~ 235 (237)
....|+|.+.+ |||+|+++++.+||+.-
T Consensus 28 ~~~~W~w~gd~-GW~~Yd~~~s~~IE~Ay 55 (110)
T 1ujr_A 28 GEYAWYYEGRN-GWWQYDERTSRELEDAF 55 (110)
T ss_dssp HEEEEEEECSS-SEEECCSHHHHHHHHHH
T ss_pred CCeEEEEeCCC-CCccCCHHHHHHHHHHH
Confidence 35679999886 69999999998888753
No 78
>3v3l_A E3 ubiquitin-protein ligase RNF146; HET: V3L; 1.65A {Homo sapiens}
Probab=91.61 E-value=0.024 Score=39.48 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=22.0
Q ss_pred ccCcccccccCCcccCCcccccchhhhh
Q 026517 208 RLSSFRRILNGDWDRSSRRIQFEIADLE 235 (237)
Q Consensus 208 ~~~~~~~~~~~~w~r~~~r~~~~~~~~~ 235 (237)
...|+|.+.+ |||+|+++++.+||+..
T Consensus 4 ~~~W~w~~~~-GW~~Yd~~~s~~IE~af 30 (85)
T 3v3l_A 4 EYAWYYEGRN-GWWQYDERTSRELEDAF 30 (85)
T ss_dssp CEEEEEECSS-SEEECCHHHHHHHHHHH
T ss_pred ceEEEEeCCC-CceeCCHHHHHHHHHHH
Confidence 4569999886 69999999988887653
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.43 E-value=0.24 Score=30.51 Aligned_cols=44 Identities=30% Similarity=0.692 Sum_probs=29.1
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCccccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRT 153 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~ 153 (237)
.|.||...-..++.+.-- .|...||..|+.+=+.... .||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC-CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888654333344433 4889999999976553322 5999964
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.67 E-value=0.37 Score=31.01 Aligned_cols=43 Identities=26% Similarity=0.616 Sum_probs=30.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCC----CCCccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH----STCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~CR~ 153 (237)
...|.+|... ++.+..- .|...||..|+.+-+... -.||.|+.
T Consensus 11 ~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG---GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC---SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCccCCCC---CcEEECC-CCChhhhhhccCCCCCCCCCCceECccccc
Confidence 5679999874 3333333 488899999999865432 25999965
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.60 E-value=0.21 Score=32.20 Aligned_cols=44 Identities=25% Similarity=0.568 Sum_probs=29.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCcccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~ 154 (237)
...|.+|... ++.+.-- .|...||..|+.+-+.... .||.|+..
T Consensus 9 ~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDG---GELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCC---SSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCC---CCEEEcC-CCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 5679999863 3333333 4888999999987554322 59999654
No 82
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=87.24 E-value=0.13 Score=41.52 Aligned_cols=45 Identities=29% Similarity=0.550 Sum_probs=31.5
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~~ 155 (237)
...|.+|... ++.+ .-..|...||..|+.+-+.... .||.|+..-
T Consensus 7 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNG---GDLL-CCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCC---EEEE-ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC---CceE-EcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4579999854 3333 3334889999999988775432 599997643
No 83
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=87.13 E-value=1.1 Score=28.11 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 18 SKIMVTAIISLTIVIVVVLLLHIYARCVLR 47 (237)
Q Consensus 18 ~~~~ii~i~~l~~vi~~i~~~~~~~~~~~r 47 (237)
..++++++.++..++++.+++++++++=..
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFF 39 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFF 39 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 345555566566666666655555555333
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.74 E-value=0.21 Score=32.35 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=31.5
Q ss_pred CCccccccccccCC-cceeecCCCCCCCchhHHHHHhc-----CCCCCccccc
Q 026517 107 AIECAVCLSNLENE-EMARVLPNCNHTFHAECIDKWLG-----SHSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~CR~ 153 (237)
...|+||...+... ..|..- .|..-||..|+.--.. ....||.|+.
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCD-LCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECS-SSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCccCCCCCEEEcc-CCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 56799999887533 334444 4888999999854321 3446999975
No 85
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=86.45 E-value=0.2 Score=39.65 Aligned_cols=45 Identities=29% Similarity=0.557 Sum_probs=31.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~~ 155 (237)
+..|.+|... ++.+..- .|.-.||..|+.+-+.... .||.|+..-
T Consensus 4 ~~~C~~C~~~---g~ll~Cd-~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GELLCCE-KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SSCEECS-SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---CeeeecC-CCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4579999865 4444333 4889999999988775432 599998643
No 86
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=86.40 E-value=0.36 Score=31.59 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 026517 34 VVLLLHIYARCVLR 47 (237)
Q Consensus 34 ~i~~~~~~~~~~~r 47 (237)
..+.++++++|+.|
T Consensus 24 ~glcI~ccvkcrhR 37 (70)
T 2klu_A 24 IGLGIFFSVRSRHR 37 (70)
T ss_dssp HHHHHHHHHHSSCC
T ss_pred HHHHHHHhhHHHHH
Confidence 33444445655433
No 87
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.36 E-value=0.78 Score=31.94 Aligned_cols=44 Identities=25% Similarity=0.580 Sum_probs=31.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCcccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~ 154 (237)
...|.+|... ++.+..- .|.-.||..|+.+=|.... .||.|+..
T Consensus 25 ~~~C~vC~~~---g~LL~CD-~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSCCSSSCSS---SCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCcCcCcCCC---CCEEECC-CCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 5579999875 4333333 4778999999988664433 59999753
No 88
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=86.33 E-value=0.23 Score=39.49 Aligned_cols=46 Identities=22% Similarity=0.505 Sum_probs=32.5
Q ss_pred CccccccccccCCc----ceeecCCCCCCCchhHHHHH------hc-----CCCCCcccccc
Q 026517 108 IECAVCLSNLENEE----MARVLPNCNHTFHAECIDKW------LG-----SHSTCPICRTG 154 (237)
Q Consensus 108 ~~C~IC~~~~~~~~----~~~~l~~C~H~fh~~Ci~~w------l~-----~~~~CP~CR~~ 154 (237)
..|+||...|..++ .+..- .|..-||..|..-= +. ....||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECC-CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 46999999988775 34444 48899999997421 11 14689999864
No 89
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.29 E-value=0.17 Score=33.89 Aligned_cols=48 Identities=19% Similarity=0.428 Sum_probs=32.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC----CCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS----HSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR~~~ 155 (237)
...|.||.........+..- .|.-.||..|+..-+.. .-.||.|+..+
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD-~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCD-DCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBCCSSCCEEECS-SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCCCCCCCEEEcC-CCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 45799998775433334333 48889999999765532 33699998755
No 90
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=85.65 E-value=1.3 Score=26.56 Aligned_cols=20 Identities=20% Similarity=0.617 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026517 21 MVTAIISLTIVIVVVLLLHI 40 (237)
Q Consensus 21 ~ii~i~~l~~vi~~i~~~~~ 40 (237)
++.+++.+++++++.+.+++
T Consensus 14 Ia~~vVGvll~vi~~l~~~~ 33 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGI 33 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 44444433333333333333
No 91
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=85.26 E-value=1.2 Score=27.97 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIVIVVVLLLHIYARCVLR 47 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i~~~~~~~~~~~r 47 (237)
++++++.++..++++++++++++++=..
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKIGFF 36 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4455555555555555555555555333
No 92
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.14 E-value=0.18 Score=31.94 Aligned_cols=43 Identities=26% Similarity=0.672 Sum_probs=29.6
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~ 153 (237)
+..|.+|... ++.+.-- .|...||..|+.+-|.... .||.|..
T Consensus 9 ~~~C~vC~~~---g~ll~Cd-~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS---SCCEECS-SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCccCCCC---CeEEEcC-CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 5679999875 4444433 4888999999987554322 4888853
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=84.51 E-value=0.36 Score=31.59 Aligned_cols=44 Identities=30% Similarity=0.608 Sum_probs=30.5
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCcccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~ 154 (237)
+..|.||... ++.+..- .|...||..|+.+-+.... .||.|...
T Consensus 8 ~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 8 EDECAVCRDG---GELICCD-GCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSBSSSSCC---SSCEECS-SCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCccCCCC---CCEEEcC-CCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4579999864 4444433 4888999999986554322 59999653
No 94
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.14 E-value=0.66 Score=45.68 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCCccccccccccCCcceeecCCCC-CCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCN-HTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
....|+|-++.|.+| .++| .| +.|-+.+|..||..+.+||+=|.++...
T Consensus 890 ~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 467899999999999 7787 77 6899999999999899999999888643
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=83.80 E-value=0.87 Score=31.58 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=32.3
Q ss_pred CCccccccccc-cCCcceeecCCCCCCCchhHHHHHhc--CCCCCccccccCCC
Q 026517 107 AIECAVCLSNL-ENEEMARVLPNCNHTFHAECIDKWLG--SHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~CR~~~~~ 157 (237)
...|.||...- ...+.+..-..|.-.||..|+..-+. ..-.||.|......
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 56899998753 22223333335888999999976432 12259999765433
No 96
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.60 E-value=0.27 Score=34.50 Aligned_cols=47 Identities=23% Similarity=0.526 Sum_probs=31.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCcccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~ 154 (237)
...|.||...-.....+..- .|...||..|+.+=|.... .||.|+..
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD-~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCD-GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECT-TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcC-CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45799998765433333333 4889999999986554322 59999764
No 97
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.01 E-value=0.69 Score=30.98 Aligned_cols=47 Identities=28% Similarity=0.581 Sum_probs=32.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHh---------cCCCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL---------GSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---------~~~~~CP~CR~~~ 155 (237)
...| ||...+.....|..-. |..-||..|+.--. .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~-C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDR-CEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSS-SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCC-CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4567 8988876544555444 88999999984221 2456799997643
No 98
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=82.94 E-value=0.4 Score=38.19 Aligned_cols=43 Identities=23% Similarity=0.575 Sum_probs=30.0
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCcccccc
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRTG 154 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~ 154 (237)
..|.+|... ++.+..- .|...||..|+.+=+.... .||.|+..
T Consensus 3 ~~C~~C~~~---g~ll~Cd-~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SSCCCCT-TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---CceeECC-CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 469999865 4434443 4888999999987554322 59999764
No 99
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.40 E-value=0.28 Score=34.11 Aligned_cols=51 Identities=16% Similarity=0.400 Sum_probs=34.0
Q ss_pred CCccccccccccC-CcceeecCCCCCCCchhHHHHHhcC--------CCCCccccccCCC
Q 026517 107 AIECAVCLSNLEN-EEMARVLPNCNHTFHAECIDKWLGS--------HSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~CR~~~~~ 157 (237)
...|.||...-.. ...+..--.|...||..|+.+-|.. .-.|+.|+.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4579999976432 1233333358899999999876542 2269999876543
No 100
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=81.47 E-value=0.63 Score=32.97 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC---CCCCccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS---HSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~CR~ 153 (237)
...| ||......+..|..-. |.-.||..|+..=+.. ...||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~-C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDK-CSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTT-TCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCC-CCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 4568 8987766665555554 8899999998653322 246999963
No 101
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.05 E-value=0.33 Score=31.07 Aligned_cols=45 Identities=24% Similarity=0.629 Sum_probs=31.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~~ 155 (237)
+..|.+|... ++.+..- .|...||..|+.+=+.... .||.|....
T Consensus 5 ~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCC---SSCEECS-SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCC---CcEEEcC-CCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4579999874 4444443 4889999999987554322 599997644
No 102
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=80.39 E-value=2.1 Score=25.44 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 18 SKIMVTAIISLTIVIVVVLLLHIYARC 44 (237)
Q Consensus 18 ~~~~ii~i~~l~~vi~~i~~~~~~~~~ 44 (237)
..++++++.++..++++.+++++++++
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566666566666666655555554
No 103
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.41 E-value=3.1 Score=27.90 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=31.0
Q ss_pred CCcccccccccc-CCcceeecCCCCCCCchhHHHHHh-----cCCCCCccccccC
Q 026517 107 AIECAVCLSNLE-NEEMARVLPNCNHTFHAECIDKWL-----GSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~CR~~~ 155 (237)
...| ||...+. ....|..- .|..-||..|+.--. .....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECG-LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBT-TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcC-CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4567 9988875 33444444 388899999984321 1345799998754
No 104
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=79.39 E-value=1.9 Score=32.70 Aligned_cols=44 Identities=25% Similarity=0.559 Sum_probs=31.2
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHhc-----------CCCCCccccc
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG-----------SHSTCPICRT 153 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----------~~~~CP~CR~ 153 (237)
.+..|.+|.+. ++.+..- .|...||..||.+=+. ..-.||+|+.
T Consensus 62 ~~d~C~vC~~G---G~LlcCD-~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCD-FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECS-SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---CcEEeCC-CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 46689999876 4444333 4889999999997663 1226999963
No 105
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.32 E-value=0.64 Score=33.50 Aligned_cols=45 Identities=27% Similarity=0.573 Sum_probs=29.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC----CCCCcccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS----HSTCPICR 152 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~CR 152 (237)
+..|.||...-...+.+.-- .|+..||..|+...+.. .-.||.|+
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCT-TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECS-SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCcCCCCCCCCcCCeECC-CCCCCcChHHhCCccccccccCccCCcCC
Confidence 45799998763332234444 49999999999887642 22477664
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.63 E-value=0.63 Score=33.72 Aligned_cols=45 Identities=31% Similarity=0.670 Sum_probs=28.6
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCccccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRT 153 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~ 153 (237)
.|.||...-.....+..-..|...||..|+.+-|.... .||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57788764222223333334889999999987664322 5999974
No 107
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=77.73 E-value=3.9 Score=24.50 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026517 21 MVTAIISLTIVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 21 ~ii~i~~l~~vi~~i~~~~~~~~~~~r~ 48 (237)
.-.+...++.+++++++...+.-+++|+
T Consensus 11 ~~~Ia~~vVGvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 11 LTSIISAVVGILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHhheehh
Confidence 4455555555443333433334443333
No 108
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=77.58 E-value=3.1 Score=24.92 Aligned_cols=7 Identities=14% Similarity=0.648 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 026517 20 IMVTAII 26 (237)
Q Consensus 20 ~~ii~i~ 26 (237)
.++..++
T Consensus 11 aIA~gVV 17 (44)
T 2l2t_A 11 LIAAGVI 17 (44)
T ss_dssp HHHHHHH
T ss_pred eEEEeeh
Confidence 3343333
No 109
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=76.35 E-value=1.2 Score=26.72 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 026517 28 LTIVIVVVLLLHI 40 (237)
Q Consensus 28 l~~vi~~i~~~~~ 40 (237)
+++++++++.+++
T Consensus 21 v~~~~ii~~~~~~ 33 (44)
T 2ks1_B 21 LLLLLVVALGIGL 33 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=76.25 E-value=1.4 Score=29.96 Aligned_cols=38 Identities=18% Similarity=0.453 Sum_probs=28.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS 144 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~ 144 (237)
...|.+|.+.++...-|..-..=.|.||..|-+..+++
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 56899999999876444322223599999999888754
No 111
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=76.05 E-value=8.6 Score=25.04 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=22.6
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 026517 8 DDHKNPYSLNSKIMVTAIISLTIVIVVV-LLLHIYARCVLRR 48 (237)
Q Consensus 8 ~~~~~~~~~~~~~~ii~i~~l~~vi~~i-~~~~~~~~~~~r~ 48 (237)
.+...||.+....+-+.-++++++++++ +++++..+|..+.
T Consensus 4 ~~e~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 4 VDKGSPFYYDWESLQLGGLIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp TSTTSGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cccCCCcccchHHheecchhhHHHHHHHHHHHHHcCcccccC
Confidence 3456788877766666555455444444 4444444554444
No 112
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.69 E-value=1.8 Score=29.07 Aligned_cols=47 Identities=30% Similarity=0.569 Sum_probs=30.9
Q ss_pred CCccccccccccCCcceeec-CCCCCCCchhHHHHHh---------cCCCCCcccccc
Q 026517 107 AIECAVCLSNLENEEMARVL-PNCNHTFHAECIDKWL---------GSHSTCPICRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl---------~~~~~CP~CR~~ 154 (237)
...| ||......+..|..- +.|..-||..|+.--- .....||.|+..
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 5678 898875555444443 0388999999985321 124579999764
No 113
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=75.04 E-value=0.75 Score=30.31 Aligned_cols=46 Identities=20% Similarity=0.505 Sum_probs=30.3
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHh---cCCCCCccccc
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL---GSHSTCPICRT 153 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~~~CP~CR~ 153 (237)
....| ||.........|..-. |..-||..|+.--. .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~-C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTT-TCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCC-CCccccccccCcCcccCCCcEECCCCCC
Confidence 35678 9988766433444444 88899999985432 12346999864
No 114
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=74.68 E-value=1.6 Score=29.00 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=30.1
Q ss_pred CCccccccccc-cCCcceeecCCCCCCCchhHHHHHhc--CCCCCccccc
Q 026517 107 AIECAVCLSNL-ENEEMARVLPNCNHTFHAECIDKWLG--SHSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~CR~ 153 (237)
...|.||...- ...+.+..--.|.-.||..|+..-.. ..-.||.|+.
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45799998763 22233333335889999999975432 1225998865
No 115
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=73.28 E-value=2.7 Score=25.21 Aligned_cols=20 Identities=5% Similarity=0.115 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026517 28 LTIVIVVVLLLHIYARCVLR 47 (237)
Q Consensus 28 l~~vi~~i~~~~~~~~~~~r 47 (237)
+..+++++++....+.+++|
T Consensus 18 VgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 18 VGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 34455555555444443333
No 116
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=73.23 E-value=0.63 Score=31.54 Aligned_cols=44 Identities=30% Similarity=0.668 Sum_probs=26.2
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCC-----CCCccccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH-----STCPICRT 153 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-----~~CP~CR~ 153 (237)
.|.||...-... .+..--.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355665543323 223323488899999998766432 25898875
No 117
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=73.05 E-value=0.76 Score=29.76 Aligned_cols=49 Identities=14% Similarity=0.434 Sum_probs=32.0
Q ss_pred CCccccccccccC-CcceeecCCCCCCCchhHHHHHhc-------CCCCCccccccC
Q 026517 107 AIECAVCLSNLEN-EEMARVLPNCNHTFHAECIDKWLG-------SHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~CR~~~ 155 (237)
...|.||...... ...+..-..|.-.||..|+.+-+. ..-.||.|....
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4579999976432 223333335888999999987442 223699997643
No 118
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=71.71 E-value=1.8 Score=33.54 Aligned_cols=46 Identities=17% Similarity=0.530 Sum_probs=30.4
Q ss_pred CCccccccccccCC-cceeecCCCCCCCchhHHHHHh-----cCCCCCcccccc
Q 026517 107 AIECAVCLSNLENE-EMARVLPNCNHTFHAECIDKWL-----GSHSTCPICRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~CR~~ 154 (237)
...| +|....... ..+..- .|...||..|+.--. .....||.|+..
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd-~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCD-RCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CEET-TTTEECCTTSCEEECT-TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECC-CCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 5679 999876433 234433 488999999985321 234479999864
No 119
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.81 E-value=5.1 Score=28.73 Aligned_cols=45 Identities=20% Similarity=0.525 Sum_probs=27.5
Q ss_pred CCccccccccc-----cCC-cceeecCCCCCCCchhHHHHH------h-cCCCCCcccc
Q 026517 107 AIECAVCLSNL-----ENE-EMARVLPNCNHTFHAECIDKW------L-GSHSTCPICR 152 (237)
Q Consensus 107 ~~~C~IC~~~~-----~~~-~~~~~l~~C~H~fh~~Ci~~w------l-~~~~~CP~CR 152 (237)
...|.+|+..- ..+ +.+.-. .|+..||..||... + ...-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~-~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCA-DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECT-TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhh-hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 34799998753 122 333333 49999999999531 2 2233577775
No 120
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=70.24 E-value=2.6 Score=26.93 Aligned_cols=42 Identities=26% Similarity=0.539 Sum_probs=29.1
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPIC 151 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 151 (237)
.|-.|...+.... +..-+.|++.||.+|=.=.-+.-.+||-|
T Consensus 17 ~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 5999999886432 24455699999999943222444579988
No 121
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=70.13 E-value=3.8 Score=27.08 Aligned_cols=43 Identities=30% Similarity=0.643 Sum_probs=26.4
Q ss_pred CCccccccccccCCcceeecCC--CC-CCCchhHHHHHhcC----CCCCcccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPN--CN-HTFHAECIDKWLGS----HSTCPICRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~CR~~ 154 (237)
...| ||..... +..+.. -. |. ..||..|+. |.. .-.||.|+..
T Consensus 16 ~~~C-~C~~~~~-g~MI~C-D~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGC-DNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCS-TTCCCSC-SSEECC-SCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCEE-ECCCCCC-CCEeEe-eCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 5568 8987643 332221 13 54 589999997 432 2369999764
No 122
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.22 E-value=6.1 Score=27.49 Aligned_cols=43 Identities=30% Similarity=0.617 Sum_probs=26.5
Q ss_pred CCccccccccccCCcceeecCC--CC-CCCchhHHHHHhcC----CCCCcccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPN--CN-HTFHAECIDKWLGS----HSTCPICRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~CR~~ 154 (237)
...| ||..... +..+..- . |. ..||..|+. |.. .-.||.|+..
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD-~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCD-NPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCS-CSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CcEE-ECCCCCC-CCEeEec-CCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 4568 9988653 3222211 2 44 579999997 322 2369999764
No 123
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=68.73 E-value=4.7 Score=29.98 Aligned_cols=44 Identities=23% Similarity=0.526 Sum_probs=29.4
Q ss_pred CCCccccccccccCCcceeecCCCCCCCchhHHHHHh------c-----CCCCCccccc
Q 026517 106 AAIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL------G-----SHSTCPICRT 153 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl------~-----~~~~CP~CR~ 153 (237)
.+..|.||.+. ++.+.- ..|-..||..||.+-+ . ..=.|++|+-
T Consensus 56 ~~~~C~vC~dG---G~LlcC-d~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG---GNLICC-DFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC---SEEEEC-SSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC---CeeEec-CCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35679999875 433222 3488999999999752 1 1126999954
No 124
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.25 E-value=1.2 Score=30.09 Aligned_cols=44 Identities=30% Similarity=0.593 Sum_probs=28.1
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcC-----CCCCccccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-----HSTCPICRT 153 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~CR~ 153 (237)
.|.||...-..++.+.-- .|...||..|+.+=|.. .=.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD-~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCD-ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECS-SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcC-CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678888643333333333 48899999999865532 225888854
No 125
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=67.74 E-value=1.5 Score=35.81 Aligned_cols=44 Identities=30% Similarity=0.668 Sum_probs=25.5
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcC-----CCCCccccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-----HSTCPICRT 153 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~CR~ 153 (237)
.|.+|...-..+..+..- .|...||..|+.+=|.. .=.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD-~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECS-SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcC-CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577887643333333333 48899999999965533 225999965
No 126
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=67.29 E-value=3.6 Score=26.72 Aligned_cols=33 Identities=21% Similarity=0.637 Sum_probs=23.6
Q ss_pred CCccccccccccCCcceeecC-CCCCCCchhHHH
Q 026517 107 AIECAVCLSNLENEEMARVLP-NCNHTFHAECID 139 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~ 139 (237)
...|.+|...+......+.-- .|.--||..|+.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 457999999987654443333 488899999973
No 127
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=66.86 E-value=15 Score=21.17 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 20 IMVTAIISLTIVIVVVLLLHIYAR 43 (237)
Q Consensus 20 ~~ii~i~~l~~vi~~i~~~~~~~~ 43 (237)
+.++++.+.+.++..++++.++.+
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555544444
No 128
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=66.51 E-value=17 Score=21.40 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026517 19 KIMVTAIISLTIVIVVVLLLHIYARCVLRR 48 (237)
Q Consensus 19 ~~~ii~i~~l~~vi~~i~~~~~~~~~~~r~ 48 (237)
.++.++..++..++++.+++.++++++...
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLliwk~~~~i 37 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLIWKLLITI 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 344444444555555555555666655443
No 129
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.51 E-value=4 Score=28.12 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=32.6
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhc-------CCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG-------SHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~CR~~~~~ 157 (237)
...|.+|...|..-..--.-..||++||..|....+. ....|-.|-..+..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 5579999999875421112224999999999765431 12248888665543
No 130
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=65.44 E-value=1.5 Score=28.89 Aligned_cols=44 Identities=30% Similarity=0.707 Sum_probs=26.4
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcC-----CCCCccccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGS-----HSTCPICRT 153 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~CR~ 153 (237)
.|.||...-..+..+ .--.|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEE-ECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEE-EcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 355676542223233 32348899999999865532 225888864
No 131
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=64.95 E-value=4.1 Score=35.78 Aligned_cols=47 Identities=15% Similarity=0.477 Sum_probs=31.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHh---cC--CCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL---GS--HSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~--~~~CP~CR~~~~~ 157 (237)
...|++-+..|..| ++-.. |.|.-|++- ..|| .+ .-.||+|...+..
T Consensus 249 SL~CPlS~~ri~~P--vRg~~-C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSIN-CKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETT-CCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCcccccccc--CcCCc-CCCcceECH-HHHHHHhhcCCceeCCCCCcccCH
Confidence 46799988888877 55554 999866554 3344 22 2369999987743
No 132
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.94 E-value=3.5 Score=30.40 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=23.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHH
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDK 140 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 140 (237)
...|.+|...|..-..--.-..||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3479999999875421112224999999999654
No 133
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=64.22 E-value=3.8 Score=28.28 Aligned_cols=49 Identities=16% Similarity=0.397 Sum_probs=31.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhc------CCCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG------SHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~------~~~~CP~CR~~~ 155 (237)
...|.+|...|..-..-..-..||++||..|...... ....|-.|-..+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 3579999998875322122225999999999876531 122477775544
No 134
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=64.10 E-value=0.98 Score=33.30 Aligned_cols=48 Identities=17% Similarity=0.427 Sum_probs=29.5
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCcccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~ 154 (237)
...|..|...|..-..--.-..||.+||..|..........|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 347999999886432111222599999999976655445568888553
No 135
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=63.71 E-value=4.4 Score=27.52 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=24.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHH
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKW 141 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 141 (237)
...|.+|...|..-..--.-..||++||..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45799999998754211122249999999997654
No 136
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=63.38 E-value=2.1 Score=26.32 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=26.7
Q ss_pred ccccccccccCCcceeecC-CCCCCCchhHHHHHh----cCCCCCcccc
Q 026517 109 ECAVCLSNLENEEMARVLP-NCNHTFHAECIDKWL----GSHSTCPICR 152 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl----~~~~~CP~CR 152 (237)
.|.+|...+..+...+.-- .|.--||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3778888875443222222 377899999974321 2455799885
No 137
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=63.31 E-value=4.6 Score=35.29 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=31.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHh---cCC--CCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWL---GSH--STCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~--~~CP~CR~~~~ 156 (237)
...|++=+..|..| ++-.. |.|.-|++- ..|| .+. -.||+|...+.
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~-C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVT-CTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETT-CCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccC--CcCCC-CCCCccCCH-HHHHHHHhhCCCeECCCCCcccC
Confidence 35799988888877 55554 999855543 3343 222 36999998774
No 138
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.07 E-value=2 Score=28.30 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=30.7
Q ss_pred CCCccccccccccCCc-ceeecCCCCCCCchhHHHHHh----cCCCCCcccccc
Q 026517 106 AAIECAVCLSNLENEE-MARVLPNCNHTFHAECIDKWL----GSHSTCPICRTG 154 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl----~~~~~CP~CR~~ 154 (237)
....| ||......+. .|..- .|..-||..|+.--. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd-~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACD-GCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECS-SSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECC-CCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 35678 7988765543 44444 388899999985432 234469999764
No 139
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=62.50 E-value=4.6 Score=27.31 Aligned_cols=35 Identities=23% Similarity=0.463 Sum_probs=23.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHH
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKW 141 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 141 (237)
...|.+|...|..-..--.-..||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 44799999998754211122249999999997543
No 140
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=61.40 E-value=6.8 Score=28.06 Aligned_cols=46 Identities=20% Similarity=0.458 Sum_probs=29.0
Q ss_pred CCccccccccccCCcceeec-CCCCCCCchhHHHHHhcCCC----CCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVL-PNCNHTFHAECIDKWLGSHS----TCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~~~~ 157 (237)
+..|.+|.+. ++.+.-- +.|...||..|+. |.... .||.|+..+..
T Consensus 15 ~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 15 EDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 5579999843 4333322 0377899999997 54322 59988765543
No 141
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.34 E-value=5.2 Score=27.16 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=21.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHH
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECID 139 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~ 139 (237)
...|.+|...|..-..--.-..||.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 457999999986432111112499999999853
No 142
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=59.58 E-value=8.3 Score=25.59 Aligned_cols=40 Identities=10% Similarity=0.261 Sum_probs=20.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 026517 9 DHKNPYSLNSKIMVTAIISLTIVIVVVL-LLHIYARCVLRR 48 (237)
Q Consensus 9 ~~~~~~~~~~~~~ii~i~~l~~vi~~i~-~~~~~~~~~~r~ 48 (237)
+...||.+....+-+.-++++++++++- ++++..+|..+.
T Consensus 7 ~~~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kcrCk~ 47 (74)
T 2zxe_G 7 DNDERFTYDYYRLRVVGLIVAAVLCVIGIIILLAGKCRCKF 47 (74)
T ss_dssp TCGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred CCCCCcccchHHheeccchhHHHHHHHHHHHHHcCccccCC
Confidence 5568888887776665555555444444 443444444443
No 143
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=59.31 E-value=1.4 Score=28.86 Aligned_cols=46 Identities=24% Similarity=0.507 Sum_probs=28.0
Q ss_pred CCccccccccccCCcceeec-CCCCCCCchhHHHHHh--------cCCCCCccccc
Q 026517 107 AIECAVCLSNLENEEMARVL-PNCNHTFHAECIDKWL--------GSHSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl--------~~~~~CP~CR~ 153 (237)
...| ||......+..|..- +.|..-||..|+.--- .....||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3567 797766555444432 1377899999973210 01356999974
No 144
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=59.22 E-value=1.8 Score=31.06 Aligned_cols=44 Identities=25% Similarity=0.547 Sum_probs=27.4
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCC----CCCccccc
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSH----STCPICRT 153 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~CR~ 153 (237)
.|.+|...-... .+..-..|...||..|+.+=+... -.||.|+.
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 466676553322 233333588999999998655432 25998855
No 145
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=58.21 E-value=23 Score=24.50 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=34.3
Q ss_pred CCccccccccccCCcc----eeecCCCCCCCchhHHHHHh-cCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEM----ARVLPNCNHTFHAECIDKWL-GSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~----~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~CR~~~~~ 157 (237)
...|.||-+++-.... +... .|+--.|+.|+.-=. +.+..||-|+.+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~-eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACN-ECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCS-SSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeee-ccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4579999998643321 1122 266778999997654 557789999988753
No 146
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.91 E-value=13 Score=24.66 Aligned_cols=42 Identities=29% Similarity=0.440 Sum_probs=30.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPRP 159 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~~ 159 (237)
...|+.|-..+...+.+. . -+..||..| ..|-.|+.+|....
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a-~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--V-NGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--B-TTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceEEE--E-CCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 457999999886554443 2 577899988 67889988876543
No 147
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=57.33 E-value=6.7 Score=25.83 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=22.3
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHH
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDK 140 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~ 140 (237)
..|.+|...|..-..--.-..||++||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 369999998875321112224999999999753
No 148
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.15 E-value=8.9 Score=24.48 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=28.7
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
..|..|-..+...+.+. . .-+..||..| ..|-.|..++..
T Consensus 6 ~~C~~C~~~I~~~~~~~-~-a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKL-E-YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEE-C-STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccEE-E-ECccccCccc--------CeECCCCCcCCC
Confidence 47999999887543332 2 2678899888 578889887754
No 149
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=56.44 E-value=29 Score=23.26 Aligned_cols=13 Identities=8% Similarity=0.314 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 026517 32 IVVVLLLHIYARC 44 (237)
Q Consensus 32 i~~i~~~~~~~~~ 44 (237)
+++++++.++...
T Consensus 26 llllliwk~~~~i 38 (79)
T 2knc_B 26 LAALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444433
No 150
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=55.70 E-value=32 Score=22.58 Aligned_cols=37 Identities=11% Similarity=0.358 Sum_probs=18.8
Q ss_pred CCCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 026517 12 NPYSLNSKIMVTAIISLTIV-IVVVLLLHIYARCVLRR 48 (237)
Q Consensus 12 ~~~~~~~~~~ii~i~~l~~v-i~~i~~~~~~~~~~~r~ 48 (237)
.||.++...+-+.-++++++ +++.+++++..+|..+.
T Consensus 7 dPF~YDY~tLRiGGLifA~vLfi~GI~iilS~KckCk~ 44 (72)
T 2jo1_A 7 DPFTYDYQSLQIGGLVIAGILFILGILIVLSRRCRCKF 44 (72)
T ss_dssp SGGGCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHhhccchHHHHHHHHHHHHHHHcCccccCC
Confidence 56766665555544444444 44444444555554444
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.12 E-value=5.3 Score=32.18 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=23.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHH
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKW 141 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 141 (237)
...|.+|...|..-..--.-..||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999988643211122249999999997543
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.68 E-value=5.6 Score=32.30 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=24.3
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHH
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKW 141 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~w 141 (237)
...|.+|...|..-..-..-..||++||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45899999988754221222259999999997654
No 153
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.65 E-value=12 Score=23.81 Aligned_cols=40 Identities=23% Similarity=0.576 Sum_probs=26.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
...|..|-..+...+.+.. . -+..||..| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV-A-LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE-C-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE-E-CCCeEcccC--------CcccccCCcCC
Confidence 3469999887765332222 2 567888887 56888888774
No 154
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=54.24 E-value=1.8 Score=31.33 Aligned_cols=46 Identities=15% Similarity=0.551 Sum_probs=29.7
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCCC----CCccccccC
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHS----TCPICRTGA 155 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~----~CP~CR~~~ 155 (237)
.|.||...-..+..+.-- .|...||..|+.+=|.... .||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd-~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCD-DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECS-SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcC-CCCccccccccCCCccCCCCCCeECccccchh
Confidence 477887654444344433 4889999999986554322 499886543
No 155
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.37 E-value=7.4 Score=25.29 Aligned_cols=41 Identities=22% Similarity=0.453 Sum_probs=30.3
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+.|-..+...+.+.. -+..||..| ..|..|+.+|...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCCC
Confidence 3479999998886654432 677899888 6799998888643
No 156
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.97 E-value=14 Score=24.36 Aligned_cols=39 Identities=18% Similarity=0.493 Sum_probs=29.3
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
...|+-|-..+...+.+.. -+..||..| ..|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 4579999998876654443 567889888 67999988775
No 157
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=51.54 E-value=10 Score=33.49 Aligned_cols=46 Identities=26% Similarity=0.675 Sum_probs=30.6
Q ss_pred CCCCccccccccccCCcceeec-CCCCCCCchhHHHHHhcC----------CCCCccccc
Q 026517 105 AAAIECAVCLSNLENEEMARVL-PNCNHTFHAECIDKWLGS----------HSTCPICRT 153 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~----------~~~CP~CR~ 153 (237)
..+..|.+|-+. ++.+..- +.|...||..||+..+.. .=.|=+|.-
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 356789999875 3222222 148899999999999832 125878853
No 158
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=51.43 E-value=7.6 Score=27.61 Aligned_cols=49 Identities=22% Similarity=0.527 Sum_probs=31.5
Q ss_pred CCccccccccccCCcceeecC-CCCCCCchhHHHHHh----------cCCCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLP-NCNHTFHAECIDKWL----------GSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl----------~~~~~CP~CR~~~ 155 (237)
...|.||...+........-- .|.--||..|+.--. .....||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 356999999985543322221 488899999974221 0234699998743
No 159
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=51.32 E-value=9.7 Score=29.29 Aligned_cols=36 Identities=25% Similarity=0.581 Sum_probs=25.5
Q ss_pred CCCCccccccccccCCcceeecC--CCCCCCchhHHHHHhcC
Q 026517 105 AAAIECAVCLSNLENEEMARVLP--NCNHTFHAECIDKWLGS 144 (237)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~ 144 (237)
..+..|.||-+. + .+..-. .|...||..||+..+..
T Consensus 77 G~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcCH
Confidence 346789999875 3 233322 48889999999998743
No 160
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=50.78 E-value=5.9 Score=27.93 Aligned_cols=12 Identities=42% Similarity=1.052 Sum_probs=10.7
Q ss_pred CCchhHHHHHhc
Q 026517 132 TFHAECIDKWLG 143 (237)
Q Consensus 132 ~fh~~Ci~~wl~ 143 (237)
.||+.||..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 161
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=50.72 E-value=20 Score=23.25 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026517 29 TIVIVVVLLLHIYARCVLRRQARRRS 54 (237)
Q Consensus 29 ~~vi~~i~~~~~~~~~~~r~~~~rr~ 54 (237)
-.++.++++.-+++-|..+.+.|+|+
T Consensus 15 Gg~~~lll~~glcI~ccvkcrhRrrq 40 (70)
T 2klu_A 15 GGVAGLLLFIGLGIFFSVRSRHRRRQ 40 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33344444445555544555544433
No 162
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=50.69 E-value=9.3 Score=21.64 Aligned_cols=21 Identities=10% Similarity=0.570 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026517 21 MVTAIISLTIVIVVVLLLHIY 41 (237)
Q Consensus 21 ~ii~i~~l~~vi~~i~~~~~~ 41 (237)
+++.++.+++++++.+.+.+|
T Consensus 10 IaagVvglll~vii~l~~~~~ 30 (35)
T 1iij_A 10 IIATVVGVLLFLILVVVVGIL 30 (35)
T ss_dssp HHHHHHHHHHHHHHTTTTTHH
T ss_pred eHHHHHHHHHHHHHHHHhheE
Confidence 333333333333333333343
No 163
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=50.41 E-value=6.1 Score=27.93 Aligned_cols=12 Identities=25% Similarity=0.935 Sum_probs=10.7
Q ss_pred CCchhHHHHHhc
Q 026517 132 TFHAECIDKWLG 143 (237)
Q Consensus 132 ~fh~~Ci~~wl~ 143 (237)
.||+.||..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 164
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.28 E-value=25 Score=22.94 Aligned_cols=40 Identities=15% Similarity=0.421 Sum_probs=29.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+-|-..+... . +. .-+..||..| ..|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~-~--v~-a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQ-P--LI-FKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSC-C--CC-CSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEecce-E--EE-ECcceeCCCC--------CEeCCCCCccCCC
Confidence 45799999988732 2 22 3678899888 6799998888643
No 165
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=49.80 E-value=8 Score=28.85 Aligned_cols=47 Identities=19% Similarity=0.400 Sum_probs=28.6
Q ss_pred CCcccccccccc-CCcceeecCCCCCCCchhHHHHHhcC-CC---CCccccc
Q 026517 107 AIECAVCLSNLE-NEEMARVLPNCNHTFHAECIDKWLGS-HS---TCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~---~CP~CR~ 153 (237)
...|.+|...|. ....-..-..|+|.+|..|-..--.. +. .|-+|+.
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 568999999983 22222333359999999885322111 11 3888875
No 166
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=49.62 E-value=3.6 Score=26.13 Aligned_cols=42 Identities=31% Similarity=0.664 Sum_probs=25.0
Q ss_pred CCccccccccccCCcceeecCC--CC-CCCchhHHHHHhcC----CCCCccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPN--CN-HTFHAECIDKWLGS----HSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~CR~ 153 (237)
...| ||..... +..+.. -. |. ..||..|+. |.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~C-D~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGC-DNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEEC-SCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEe-CCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4467 8987643 322221 23 44 579999997 432 235999964
No 167
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=49.42 E-value=7.5 Score=25.28 Aligned_cols=36 Identities=19% Similarity=0.464 Sum_probs=16.7
Q ss_pred cccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 110 CAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 110 C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
|+.|-..+..++.+.. -+..||..| ..|..|+.++.
T Consensus 3 C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 38 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLT 38 (76)
T ss_dssp CTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCC
T ss_pred CCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCC
Confidence 5555555443332221 344555555 34555555443
No 168
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.35 E-value=15 Score=23.28 Aligned_cols=39 Identities=23% Similarity=0.514 Sum_probs=27.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|+.|-..+... . +.. -+..||..| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~-~--~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-G--VTY-REQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSS-E--EES-SSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCCcccCCeeccc-e--EEE-CccccCCCC--------CccCCCCCcCCc
Confidence 34699999888743 2 232 678899888 578889887743
No 169
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=48.95 E-value=30 Score=19.43 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 026517 32 IVVVLLLHIYA 42 (237)
Q Consensus 32 i~~i~~~~~~~ 42 (237)
++++--.|+|+
T Consensus 20 f~~lg~tflyw 30 (40)
T 2l9u_A 20 FMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhCceeEEE
Confidence 33333344444
No 170
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.81 E-value=10 Score=24.22 Aligned_cols=41 Identities=15% Similarity=0.385 Sum_probs=28.4
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
..|+.|-..+...+.+... -+..||..| ..|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCCC
Confidence 4699999888865433322 567888877 5688888877543
No 171
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.97 E-value=15 Score=23.47 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=28.9
Q ss_pred CCccccccccccC--CcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLEN--EEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|+-|-..+.. .+.+. . .-+..||..| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~-a~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-S-FEERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-E-CSSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceE-E-ECCcccCccc--------CEeccCCCcCCC
Confidence 3479999998875 22322 2 2678899888 578999888753
No 172
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.95 E-value=9.3 Score=25.09 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=27.6
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
...|.-|-..+... .+. .-+..||..| ..|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~---~~~-a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGV---FVK-LRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSS---CEE-CSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccCc---EEE-ECcceeCcCc--------CeeCCCCCCCC
Confidence 45799999988753 223 2678899888 56888887764
No 173
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.95 E-value=15 Score=24.08 Aligned_cols=41 Identities=17% Similarity=0.436 Sum_probs=29.6
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
..|+.|-..+...+.+.. .-+..||..| ..|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE--YKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE--CSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEE--ECcccccccc--------CchhhCCCccCCC
Confidence 479999998876554332 2577899888 5788898877543
No 174
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=46.99 E-value=4.4 Score=25.68 Aligned_cols=42 Identities=33% Similarity=0.660 Sum_probs=25.6
Q ss_pred CCccccccccccCCcceeecCC--CC-CCCchhHHHHHhcC----CCCCccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPN--CN-HTFHAECIDKWLGS----HSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~~----~~~CP~CR~ 153 (237)
...| ||..... +..+. --. |. ..||..|+. |.. .-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g~mi~-CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIG-CDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEE-CSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeE-eeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4467 8987643 43222 123 55 589999997 332 235999964
No 175
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=46.86 E-value=27 Score=23.31 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=29.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|.-|-..+... . +. .-+..||..| ..|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~~~-~--~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVGA-V--VK-ARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCSC-C--EE-SSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEeccc-E--EE-ECCceECccC--------CEecCCCCCCCCC
Confidence 45799999988752 2 22 2678899888 6788998887543
No 176
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=46.54 E-value=13 Score=26.74 Aligned_cols=37 Identities=27% Similarity=0.573 Sum_probs=23.2
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccC
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGA 155 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~ 155 (237)
.|+.|-..+...+.+.. .-+..||..| ..|-.|..+|
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEE--ECCccccccc--------CccccCCCCC
Confidence 58888777765333322 2567788777 4566776666
No 177
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.01 E-value=9.9 Score=25.65 Aligned_cols=40 Identities=18% Similarity=0.411 Sum_probs=28.9
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+.|-..+.. +. +.. -+..||..| ..|-.|+.+|...
T Consensus 25 ~~~C~~C~~~I~~-~~--v~a-~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIRG-PF--LVA-LGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCCS-CE--EEE-TTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCccCCCEecc-eE--EEE-CCccccccC--------CccCCCCCCCCCC
Confidence 4579999998853 22 222 678899888 6799998888643
No 178
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=45.98 E-value=12 Score=23.40 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=28.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|+.|-..+. ++ .+.. -+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SC--EECC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ce--EEEE-CccccccCc--------CEECCCCCCCCC
Confidence 347999999887 32 2332 678899888 579999888754
No 179
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.79 E-value=12 Score=23.78 Aligned_cols=40 Identities=20% Similarity=0.487 Sum_probs=27.8
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|..|-..+.. ..+ .. -+..||..| ..|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVI--KA-MNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCE--EE-TTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEE--EE-CcccccccC--------CEeCCCCCcCCCC
Confidence 3579999888773 222 22 567888888 5788888877654
No 180
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=44.32 E-value=13 Score=24.19 Aligned_cols=31 Identities=19% Similarity=0.490 Sum_probs=23.7
Q ss_pred CCCccccccccccCCcceeecCCC-CCCCchhHHHHH
Q 026517 106 AAIECAVCLSNLENEEMARVLPNC-NHTFHAECIDKW 141 (237)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~l~~C-~H~fh~~Ci~~w 141 (237)
...-|.||.++ ..++.+. | +-+||..|.+..
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 35679999998 3356775 9 679999998774
No 181
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=44.29 E-value=4.7 Score=35.56 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhc-------CCCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLG-------SHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~CR~~~ 155 (237)
...|.+|...|..-..-..-..||++||..|....+. ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4579999998864311111124999999999876541 122476665433
No 182
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=44.14 E-value=2.8 Score=23.66 Aligned_cols=14 Identities=21% Similarity=0.679 Sum_probs=10.4
Q ss_pred CCccccccccccCC
Q 026517 107 AIECAVCLSNLENE 120 (237)
Q Consensus 107 ~~~C~IC~~~~~~~ 120 (237)
...|++|+..+...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46788888877665
No 183
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.84 E-value=21 Score=22.93 Aligned_cols=37 Identities=16% Similarity=0.445 Sum_probs=26.7
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
..|+-|-..+... .+. .-+..||.+| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~---~v~-a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGR---VLE-AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSC---CBC-CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCe---eEE-eCCCCCCCCc--------CEeCCCCCCCC
Confidence 4699998887652 222 3678899888 57888888775
No 184
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.73 E-value=11 Score=24.32 Aligned_cols=42 Identities=17% Similarity=0.384 Sum_probs=29.1
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+-|-..+...+.+... -+..||..| ..|-.|..++...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 35799999988754443322 567888888 5688888877543
No 185
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=43.36 E-value=5.3 Score=25.57 Aligned_cols=44 Identities=30% Similarity=0.569 Sum_probs=25.5
Q ss_pred CCccccccccccCCcceeecCC--CC-CCCchhHHHHHh--cCCCCCccccc
Q 026517 107 AIECAVCLSNLENEEMARVLPN--CN-HTFHAECIDKWL--GSHSTCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl--~~~~~CP~CR~ 153 (237)
...| ||..... +..+.- -. |. ..||..|+.--- ...-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~MI~C-D~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGC-DNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEEC-SCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeee-eCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 4567 8988633 433222 23 44 789999997211 11336999965
No 186
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=43.24 E-value=14 Score=19.88 Aligned_cols=28 Identities=21% Similarity=0.409 Sum_probs=19.7
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHH
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECI 138 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci 138 (237)
..|+.|-......+.+. .-|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 36999988876554433 26789999883
No 187
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=42.84 E-value=7.8 Score=27.67 Aligned_cols=24 Identities=25% Similarity=0.603 Sum_probs=15.2
Q ss_pred CCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 128 NCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 128 ~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
.||+.|. .=+.....||.|+..-.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 4999991 11233457999987543
No 188
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.17 E-value=33 Score=22.93 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=29.6
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+-|-..+...+.+ .. -+..||..| ..|-.|..+|...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LA-NQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--EC-SSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EE-CCCEECCCC--------CeeCCCCCCCCCC
Confidence 34799999988765443 22 677889888 5688888877654
No 189
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=41.03 E-value=4.7 Score=24.67 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=25.5
Q ss_pred cccccccCCcceeecCCCCCCCchhHHHHHh---cCCCCCccccc
Q 026517 112 VCLSNLENEEMARVLPNCNHTFHAECIDKWL---GSHSTCPICRT 153 (237)
Q Consensus 112 IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~~~CP~CR~ 153 (237)
||.........+.--. |+.-||..|+.--. .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~-C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNE-CHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTT-TCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCC-CCccccccccCCCcccCCCcEECcCCCC
Confidence 6766555334444443 88899999985322 23446999975
No 190
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.80 E-value=29 Score=22.62 Aligned_cols=40 Identities=23% Similarity=0.475 Sum_probs=28.1
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
..|+.|-..+.....+ +..-+..||..| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRE--LFYEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCB--CCCSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEE--EEeCCccccccC--------CeecCCCCccCC
Confidence 4799999988733222 222578899888 578899888753
No 191
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.58 E-value=19 Score=23.49 Aligned_cols=38 Identities=21% Similarity=0.481 Sum_probs=27.4
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
..|+.|-..+... . +. .-+..||..| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~~-~--~~-a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMTGP-F--MV-AGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCCSC-C--BC-CTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcCce-E--EE-ECCceecccc--------CCccCCCCccCC
Confidence 4699999888732 2 22 3678899888 579999888753
No 192
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.35 E-value=26 Score=22.59 Aligned_cols=40 Identities=18% Similarity=0.391 Sum_probs=28.3
Q ss_pred CccccccccccC--CcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 108 IECAVCLSNLEN--EEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
..|+.|-..+.. ...+. .. -+..||..| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~-~a-~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFI-CF-QDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEE-EE-TTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeE-EE-CCcccCccc--------CChhhCCCcCCC
Confidence 469999998875 22222 22 677899988 678899888753
No 193
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=38.57 E-value=8.7 Score=25.30 Aligned_cols=40 Identities=23% Similarity=0.568 Sum_probs=28.4
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
..|+.|-..+...+.+.. -+..||..| ..|-.|+.+|...
T Consensus 8 ~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECSS
T ss_pred CcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCCC
Confidence 469999998876654332 667888877 5688888877543
No 194
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.42 E-value=8.4 Score=24.46 Aligned_cols=36 Identities=25% Similarity=0.603 Sum_probs=23.3
Q ss_pred CccccccccccCCcceeecC--C--CCCCCchhHHHHHhc
Q 026517 108 IECAVCLSNLENEEMARVLP--N--CNHTFHAECIDKWLG 143 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~--~--C~H~fh~~Ci~~wl~ 143 (237)
..|+-|...++..+....+. . |+|.||..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 35888887777654333332 1 667788888777753
No 195
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.38 E-value=18 Score=22.82 Aligned_cols=37 Identities=19% Similarity=0.483 Sum_probs=26.0
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
..|+-|-..+.. +.+. . -+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGIT--Y-QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEE--E-TTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEE--E-CccccccCc--------CEECCCCCCCC
Confidence 469999888764 3322 2 567888887 56888888775
No 196
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=38.31 E-value=15 Score=23.18 Aligned_cols=42 Identities=17% Similarity=0.404 Sum_probs=29.7
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
...|+-|-..+...+.+.. . -+..||..| ..|-.|..++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~-~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-S-NGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-E-TTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-e-CcCeeCcCC--------CcccCCCCCCCCC
Confidence 3479999998886654433 2 567788888 4688888877543
No 197
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=37.42 E-value=3.5 Score=27.79 Aligned_cols=19 Identities=26% Similarity=0.814 Sum_probs=15.1
Q ss_pred CCCCCCchhHHHHHhcCCCCC
Q 026517 128 NCNHTFHAECIDKWLGSHSTC 148 (237)
Q Consensus 128 ~C~H~fh~~Ci~~wl~~~~~C 148 (237)
.|+|.||..|...|=. ..|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 4999999999988844 455
No 198
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=36.68 E-value=60 Score=18.49 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 026517 18 SKIMVTAII 26 (237)
Q Consensus 18 ~~~~ii~i~ 26 (237)
...+..+++
T Consensus 10 ~GaIAGiVv 18 (38)
T 2k1k_A 10 GGEIVAVIF 18 (38)
T ss_dssp HHHHHHHHH
T ss_pred CCceeeeeh
Confidence 334443333
No 199
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=36.31 E-value=34 Score=24.78 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=2.7
Q ss_pred hHHHHH
Q 026517 19 KIMVTA 24 (237)
Q Consensus 19 ~~~ii~ 24 (237)
..++++
T Consensus 97 K~~iii 102 (119)
T 2kog_A 97 KMMIIL 102 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 200
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=35.59 E-value=42 Score=26.83 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 026517 23 TAIISLTIVIVVVLLLHIYARCVLRRQARRRSVIRS 58 (237)
Q Consensus 23 i~i~~l~~vi~~i~~~~~~~~~~~r~~~~rr~~~~~ 58 (237)
.++++-++++++++.+++|......+-.+..+.++.
T Consensus 151 t~vliPv~i~F~~Fa~hFYrsL~~hk~e~~~~~i~e 186 (214)
T 4hkr_A 151 TVVLIPVMIIFMAFAIHFYRSLVSHKYEVTVSGIRE 186 (214)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666777778888887766665554444443
No 201
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=35.51 E-value=16 Score=26.47 Aligned_cols=39 Identities=18% Similarity=0.472 Sum_probs=29.2
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
...|+-|-..+.....+. .-+..||..| ..|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEcccc--------cCcCcCCCccc
Confidence 457999998887542232 2678899988 67999998885
No 202
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=35.42 E-value=11 Score=26.04 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=25.5
Q ss_pred CCccccccccccCCcceeecCCCC---CCCchhHHHHHh--cCCCCCcc-ccc
Q 026517 107 AIECAVCLSNLENEEMARVLPNCN---HTFHAECIDKWL--GSHSTCPI-CRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~---H~fh~~Ci~~wl--~~~~~CP~-CR~ 153 (237)
...| ||..... ++.|..- .|. ..||..|+.--- ...-.||. |+.
T Consensus 26 ~~yC-iC~~~~~-g~MI~CD-~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GPMVACD-NPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCCS-SSEECCC-SSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCCC-CCEEEec-CCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 4568 8987533 3333322 244 589999985211 12336999 974
No 203
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.73 E-value=26 Score=22.67 Aligned_cols=37 Identities=30% Similarity=0.582 Sum_probs=26.9
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
..|+.|-..+... .+.. -+..||..| ..|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~---~v~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTY-RDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC---CEES-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCc---EEEE-CCchhhhhh--------CCcccCCCcCC
Confidence 4699998887653 2232 678889888 57888988874
No 204
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.06 E-value=19 Score=23.54 Aligned_cols=39 Identities=28% Similarity=0.682 Sum_probs=27.5
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
..|+.|-..+. +..+. .-+..||..| ..|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~-~~~v~---a~~~~wH~~C--------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS---ALGKTYHPDC--------FVCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCCEE---ETTEEECTTT--------SSCSSSCCCCCSS
T ss_pred CcCccccCEec-cceEE---ECCceeCccC--------CccccCCCCCCCC
Confidence 37999998877 33222 2677889888 5788888877543
No 205
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.47 E-value=3.5 Score=28.12 Aligned_cols=26 Identities=31% Similarity=0.827 Sum_probs=17.6
Q ss_pred cCCCCCCCchhHHHHHhcCCC--CCccc
Q 026517 126 LPNCNHTFHAECIDKWLGSHS--TCPIC 151 (237)
Q Consensus 126 l~~C~H~fh~~Ci~~wl~~~~--~CP~C 151 (237)
-|.|+|.||..|-.+|=+.|. +|..-
T Consensus 46 C~~C~~~FC~~C~~~w~~~H~~~sC~~~ 73 (86)
T 2ct7_A 46 CPQCHQTFCVRCKRQWEEQHRGRSCEDF 73 (86)
T ss_dssp CTTTCCEECSSSCSBCCTTTTTSCHHHH
T ss_pred eCCCCCccccccCCchhhcCCCCChHHH
Confidence 345999999999988843333 46443
No 206
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=30.56 E-value=23 Score=26.89 Aligned_cols=45 Identities=20% Similarity=0.428 Sum_probs=29.3
Q ss_pred CCcccccccccc--CCcceeecCCCCCCCchhHHHHHhcCCC--CCccccc
Q 026517 107 AIECAVCLSNLE--NEEMARVLPNCNHTFHAECIDKWLGSHS--TCPICRT 153 (237)
Q Consensus 107 ~~~C~IC~~~~~--~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~CR~ 153 (237)
...|++|...|. .+...... .|+|.+|..|- .|+.... .|-+|+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCC-CCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 568999999863 23233333 59999999996 3443333 3777764
No 207
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.32 E-value=29 Score=22.22 Aligned_cols=40 Identities=18% Similarity=0.397 Sum_probs=28.0
Q ss_pred CccccccccccC---CcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 108 IECAVCLSNLEN---EEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 108 ~~C~IC~~~~~~---~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
..|+-|-..+.. ...+. .. -+..||..| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVV-AY-EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEE-EE-TTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeE-EE-CcceeCccc--------CEehhcCCCCCC
Confidence 469999988874 22222 22 567899888 679999888853
No 208
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=30.11 E-value=1.1e+02 Score=19.46 Aligned_cols=35 Identities=26% Similarity=0.539 Sum_probs=29.3
Q ss_pred CCccccccccccCCcceeecCCCCCCCc-hhHHHHH
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFH-AECIDKW 141 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh-~~Ci~~w 141 (237)
...|.-|...+..+...+.-...-|.|| ..||...
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 4589999999999988888777889998 5688764
No 209
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.00 E-value=23 Score=23.07 Aligned_cols=39 Identities=23% Similarity=0.672 Sum_probs=27.4
Q ss_pred CCccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
...|+-|-..+... . +.. -+..||..| ..|..|..+|..
T Consensus 15 ~~~C~~C~~~I~~~-~--~~a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILDR-I--LRA-MGKAYHPGC--------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCSC-C--EEE-TTEEECTTT--------CBCSSSCCBCTT
T ss_pred CCccccCCCeecce-e--EEE-CCccccHHh--------cCcccCCCccCC
Confidence 45799998888732 2 222 677888887 579999888753
No 210
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.95 E-value=26 Score=22.67 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=27.5
Q ss_pred CccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 108 IECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
..|+.|-..+... .+ .. -+..||..| ..|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~-~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLEN-YL--SA-MDTVWHPEC--------FVCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCSS-CE--EE-TTEEECTTT--------CBCSSSCCBSCSS
T ss_pred CccccCCCeecce-eE--EE-CCCeEecCc--------CChhhCCCCCCCC
Confidence 4699998887752 22 22 567888887 5789998887543
No 211
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.62 E-value=14 Score=24.19 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=13.7
Q ss_pred HHHhcCCCCCccccccCCCC
Q 026517 139 DKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 139 ~~wl~~~~~CP~CR~~~~~~ 158 (237)
+.||..--.||.|+.++...
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 44555566799999887543
No 212
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.20 E-value=13 Score=24.26 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=14.3
Q ss_pred HHHhcCCCCCccccccCCCC
Q 026517 139 DKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 139 ~~wl~~~~~CP~CR~~~~~~ 158 (237)
++||..--.||.|+.++...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 35666666799999987543
No 213
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=26.65 E-value=23 Score=23.19 Aligned_cols=45 Identities=24% Similarity=0.516 Sum_probs=28.6
Q ss_pred CccccccccccC-CcceeecCCCCCCCchhHHHHHhc-----CCCCCcccccc
Q 026517 108 IECAVCLSNLEN-EEMARVLPNCNHTFHAECIDKWLG-----SHSTCPICRTG 154 (237)
Q Consensus 108 ~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~CR~~ 154 (237)
..| ||...+.. ...|..- .|.--||..|+.---. ....||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd-~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECD-ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECT-TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcC-CCCCCEecccccccccccCCCCEEECCCCccc
Confidence 345 88877643 3344444 3888999999953321 23569999764
No 214
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=26.39 E-value=14 Score=33.57 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=30.4
Q ss_pred CCcccccccccc-CCcceeecCCCCCCCchhHHHHHhc-----CCCCCccccccC
Q 026517 107 AIECAVCLSNLE-NEEMARVLPNCNHTFHAECIDKWLG-----SHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~CR~~~ 155 (237)
...| ||...+. .+..+..-. |.--||..|+.---. ....||.|+...
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~-C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDI-CKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTT-TCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccC-CCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 3456 9988764 334444443 889999999843221 234699998643
No 215
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.39 E-value=15 Score=19.66 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=6.7
Q ss_pred CCCccccccC
Q 026517 146 STCPICRTGA 155 (237)
Q Consensus 146 ~~CP~CR~~~ 155 (237)
..||+|+..+
T Consensus 4 ~~CpvCk~q~ 13 (28)
T 2jvx_A 4 FCCPKCQYQA 13 (28)
T ss_dssp EECTTSSCEE
T ss_pred ccCccccccC
Confidence 4588887654
No 216
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.19 E-value=36 Score=23.88 Aligned_cols=11 Identities=0% Similarity=-0.106 Sum_probs=4.9
Q ss_pred CCCCchhHHHH
Q 026517 130 NHTFHAECIDK 140 (237)
Q Consensus 130 ~H~fh~~Ci~~ 140 (237)
|..||..|...
T Consensus 52 g~~yC~~~y~~ 62 (114)
T 1j2o_A 52 GRKLCRRDYLR 62 (114)
T ss_dssp TBCCCHHHHHH
T ss_pred CeeechHHHHH
Confidence 33444444444
No 217
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.00 E-value=49 Score=22.31 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=5.1
Q ss_pred cccccccccc
Q 026517 109 ECAVCLSNLE 118 (237)
Q Consensus 109 ~C~IC~~~~~ 118 (237)
.|+.|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (101)
T 2cup_A 7 GCVECRKPIG 16 (101)
T ss_dssp BCSSSCCBCC
T ss_pred cCcccCCccc
Confidence 4555555544
No 218
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.61 E-value=45 Score=23.68 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=33.3
Q ss_pred CccccccccccC-CcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCCC
Q 026517 108 IECAVCLSNLEN-EEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEPR 158 (237)
Q Consensus 108 ~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~~ 158 (237)
..|..|...+.. +.. .... =|..||..|...-+.....|-.|..+|...
T Consensus 33 F~C~~C~~~L~~~~~~-~~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTS-SYTK-SGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HCCSSSCCCTTTSEEC-CEEE-TTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCcCCCCCcccccCCe-EEEE-CCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 467888777752 112 2222 567889999988776555899999888654
No 219
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.14 E-value=6.4 Score=33.67 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCccccccccccCCcceee---cCCCCCCCchhHHHHHhcCCCCCcccccc
Q 026517 107 AIECAVCLSNLENEEMARV---LPNCNHTFHAECIDKWLGSHSTCPICRTG 154 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~---l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~ 154 (237)
...|++|-..-... .+.. ..+=.|.+|..|-..|-.....||.|-..
T Consensus 182 ~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 45799998874433 1110 01122567777888898888899999653
No 220
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=24.90 E-value=41 Score=23.03 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 026517 30 IVIVVVLLLHIYARCV 45 (237)
Q Consensus 30 ~vi~~i~~~~~~~~~~ 45 (237)
+.+++++++|++.++.
T Consensus 70 ~FIa~VilLHI~gK~~ 85 (87)
T 2ww9_C 70 GFIFSVIALHLLTKFT 85 (87)
T ss_dssp HHHHHHHHC-------
T ss_pred HHHHHHHHHHHhhhhc
Confidence 3444555667766653
No 221
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=24.84 E-value=1e+02 Score=17.49 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026517 21 MVTAIISLTIVIVVVLLLHIYA 42 (237)
Q Consensus 21 ~ii~i~~l~~vi~~i~~~~~~~ 42 (237)
..++....++++++++++|++.
T Consensus 8 ~~lan~lG~~~~~LIVlYH~v~ 29 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVLYHYVA 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555566666543
No 222
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.15 E-value=46 Score=21.57 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=26.1
Q ss_pred CCccccccccccCCcceeecCCCC---CCCchhHHHHHh--cCCCCCccccccC
Q 026517 107 AIECAVCLSNLENEEMARVLPNCN---HTFHAECIDKWL--GSHSTCPICRTGA 155 (237)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~l~~C~---H~fh~~Ci~~wl--~~~~~CP~CR~~~ 155 (237)
...| ||.... .+..|..-. |. .-||..|+.--- ...-.||.|+...
T Consensus 6 ~~yC-~C~~~~-~g~MI~CD~-cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYC-ICNQVS-YGEMVGCDN-QDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCS-TTSCCC-CSSEECCSC-TTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CeEE-EcCCCC-CCCEeEeCC-CCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 4456 587653 333333322 42 689999996311 1223599997654
No 223
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=23.57 E-value=36 Score=21.16 Aligned_cols=39 Identities=23% Similarity=0.487 Sum_probs=27.3
Q ss_pred ccccccccccCCcceeecCCCCCCCc--hhHHHHHhcCCCCCccccccCCC
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFH--AECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh--~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
.|+-|-..+...+.... .-+..|| ..| ..|-.|+.++..
T Consensus 4 ~C~~C~~~I~~~~~~v~--a~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVT--YNNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEE--ETTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEE--ECCCccCCCCCC--------EECCCCCCcCCC
Confidence 58889888775323222 2577889 888 678889888753
No 224
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=23.50 E-value=32 Score=26.58 Aligned_cols=38 Identities=24% Similarity=0.623 Sum_probs=22.8
Q ss_pred ccccccccccCCcceeecCCCCCCCchhHHHHHhcCCCCCccccccCC
Q 026517 109 ECAVCLSNLENEEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAE 156 (237)
Q Consensus 109 ~C~IC~~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~ 156 (237)
.|..|-..+...+.+.. .-++.||..| ..|-.|..++.
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C--------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC--------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG--------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC--------CeECCCCCCCC
Confidence 47777776654333222 2567777777 46777776664
No 225
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=23.21 E-value=1.2e+02 Score=19.49 Aligned_cols=19 Identities=5% Similarity=0.074 Sum_probs=7.0
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 026517 17 NSKIMVTAIISLTIVIVVV 35 (237)
Q Consensus 17 ~~~~~ii~i~~l~~vi~~i 35 (237)
+....+..++..++.++++
T Consensus 24 WGTtplMgv~m~Lf~vFl~ 42 (65)
T 3arc_H 24 WGTTPLMAVFMGLFLVFLL 42 (65)
T ss_dssp TTTHHHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 226
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.29 E-value=43 Score=23.87 Aligned_cols=49 Identities=12% Similarity=0.308 Sum_probs=31.4
Q ss_pred CCccccccccccC-CcceeecCCCCCCCchhHHHHHhcCCCCCccccccCCC
Q 026517 107 AIECAVCLSNLEN-EEMARVLPNCNHTFHAECIDKWLGSHSTCPICRTGAEP 157 (237)
Q Consensus 107 ~~~C~IC~~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~CR~~~~~ 157 (237)
-..|..|...+.. +.... .. =|..||..|...-+.....|..|..+|..
T Consensus 29 CF~C~~C~~~L~~~~~~~~-~~-~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLY-YK-LGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEE-EE-TTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HcccCcCCCccccCCCeEE-EE-CCEEeecCchhhhCCCccChhhcCCccCc
Confidence 3567788777753 22222 22 56788888887765544478888887754
No 227
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=22.11 E-value=97 Score=21.77 Aligned_cols=25 Identities=28% Similarity=0.704 Sum_probs=16.5
Q ss_pred CCCCCchhHHH------HHhcC-----CCCCccccc
Q 026517 129 CNHTFHAECID------KWLGS-----HSTCPICRT 153 (237)
Q Consensus 129 C~H~fh~~Ci~------~wl~~-----~~~CP~CR~ 153 (237)
|+..||..|+. .-+.. ...||.|-.
T Consensus 8 c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 8 CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred CCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 89999999952 12222 357999954
No 228
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=21.65 E-value=4.6 Score=20.53 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=7.6
Q ss_pred CCchhHHHHHh
Q 026517 132 TFHAECIDKWL 142 (237)
Q Consensus 132 ~fh~~Ci~~wl 142 (237)
.||..|-++||
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 46777777776
No 229
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.31 E-value=46 Score=25.12 Aligned_cols=10 Identities=20% Similarity=0.840 Sum_probs=5.3
Q ss_pred CCccccccCC
Q 026517 147 TCPICRTGAE 156 (237)
Q Consensus 147 ~CP~CR~~~~ 156 (237)
.|-.|...+.
T Consensus 95 ~C~~C~~~L~ 104 (169)
T 2rgt_A 95 ACVVCKRQLA 104 (169)
T ss_dssp BCTTTCCBCC
T ss_pred cCCCCCCCCC
Confidence 4555555543
No 230
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=20.94 E-value=95 Score=21.23 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=12.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 026517 12 NPYSLNSKIMVTAIISLTIVIVVVLLLHIYA 42 (237)
Q Consensus 12 ~~~~~~~~~~ii~i~~l~~vi~~i~~~~~~~ 42 (237)
.|.....+++.++.+ ++.++++.+++-.+.
T Consensus 61 ~P~t~~gr~~~~~~~-l~G~~~~~~~~~~i~ 90 (103)
T 2k1e_A 61 YPVTEEGRKVAEQVM-KAGIEVFALVTAALA 90 (103)
T ss_dssp CCCSSSCTHHHHHHH-HHHHHHHHHTHHHHH
T ss_pred CCCChhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344444455544333 333333333333333
No 231
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=20.42 E-value=1.2e+02 Score=17.08 Aligned_cols=14 Identities=7% Similarity=0.377 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 026517 28 LTIVIVVVLLLHIY 41 (237)
Q Consensus 28 l~~vi~~i~~~~~~ 41 (237)
.+.++++++++|++
T Consensus 15 G~~~~~LIvlYH~v 28 (36)
T 1rkl_A 15 GIVMMTLIVIYHAV 28 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555543
No 232
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=20.17 E-value=1.1e+02 Score=17.20 Aligned_cols=15 Identities=20% Similarity=0.560 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 026517 29 TIVIVVVLLLHIYAR 43 (237)
Q Consensus 29 ~~vi~~i~~~~~~~~ 43 (237)
++++-.++++.+|++
T Consensus 14 fi~iPt~FLlilYvq 28 (36)
T 3arc_M 14 FVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhe
Confidence 334444445555544
Done!