BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026518
         (237 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D3K|A Chain A, Crystal Structure Of Human Edc3p
 pdb|3D3K|B Chain B, Crystal Structure Of Human Edc3p
 pdb|3D3K|C Chain C, Crystal Structure Of Human Edc3p
 pdb|3D3K|D Chain D, Crystal Structure Of Human Edc3p
          Length = 259

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 124 PEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQSVASAREIKISKKGRRGAEHAIS 183
           P   ++ FC D G+    V P++++ + ++L  +A +      E ++   G   ++ A++
Sbjct: 15  PHNVSKEFCTDSGL----VVPSISYELHKKLLSVA-EKHGLTLERRLEMTGVCASQMALT 69

Query: 184 SKGGGNALD 192
             GG N L+
Sbjct: 70  LLGGPNRLN 78


>pdb|3D3J|A Chain A, Crystal Structure Of Human Edc3p
          Length = 306

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 124 PEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQSVASAREIKISKKGRRGAEHAIS 183
           P   ++ FC D G+    V P++++ + ++L  +A +      E ++   G   ++ A++
Sbjct: 62  PHNVSKEFCTDSGL----VVPSISYELHKKLLSVA-EKHGLTLERRLEMTGVCASQMALT 116

Query: 184 SKGGGNALD 192
             GG N L+
Sbjct: 117 LLGGPNRLN 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,853,245
Number of Sequences: 62578
Number of extensions: 272927
Number of successful extensions: 617
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 11
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)