BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026518
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93045|BSH_ARATH Chromatin structure-remodeling complex protein BSH OS=Arabidopsis
thaliana GN=BSH PE=1 SV=2
Length = 240
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/240 (75%), Positives = 213/240 (88%), Gaps = 3/240 (1%)
Query: 1 MKLPATSSSKAPVK---PTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTV 57
MK ++ K PVK PTA+NLVPIRLDI+ EGQRYKDAFTWNPSDPD+EVV+FAKRTV
Sbjct: 1 MKGLVSTGWKGPVKFRMPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTV 60
Query: 58 RDLKLPPQFITQIAQSIQTQLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDL 117
+DLKLP F+TQIAQSIQ+QL++FR+YEGQDMYT EKI+PIKLDLRVNHTLIKD FLWDL
Sbjct: 61 KDLKLPYAFVTQIAQSIQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDL 120
Query: 118 NNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQSVASAREIKISKKGRRG 177
NN+ESDPEEFART C D+G+EDPEVGPAVAFAIREQLYEIAIQSVASARE ++SKKGRRG
Sbjct: 121 NNFESDPEEFARTLCKDLGVEDPEVGPAVAFAIREQLYEIAIQSVASARESRLSKKGRRG 180
Query: 178 AEHAISSKGGGNALDLMKLFRYNSSVVRKRKEWYVYEPIVDILSNEEVDALEAREDRNTR 237
++H +SK G ++DLMKLF + SSVVRKRK+ VYEP+VD+L++EEVDALEARE+R+ R
Sbjct: 181 SDHGSASKASGLSMDLMKLFSFKSSVVRKRKDLDVYEPVVDLLTSEEVDALEAREERHAR 240
>sp|Q5U379|SNF5_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1-A OS=Danio rerio
GN=smarcb1a PE=2 SV=1
Length = 373
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 3/136 (2%)
Query: 20 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 78
LVPIRLD+E +GQ+ +DAFTWN ++ +FA+ DL L P F+ IA +I+ Q+
Sbjct: 174 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQQI 233
Query: 79 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 138
+ + D ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 234 ESYPTDSILDEQMDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL- 291
Query: 139 DPEVGPAVAFAIREQL 154
E +A++IR QL
Sbjct: 292 GGEFVTTIAYSIRGQL 307
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 93 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 152
E +VPI+LD+ ++ ++D F W++N PE FA C+D+ + PA+A AIR+
Sbjct: 172 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQ 231
Query: 153 QLYEIAIQSV 162
Q+ S+
Sbjct: 232 QIESYPTDSI 241
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 18 DNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQ 77
D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+ Q
Sbjct: 247 DQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQ 306
Query: 78 LT 79
L+
Sbjct: 307 LS 308
>sp|O42467|SNF5_TETFL SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Tetraodon fluviatilis
GN=smarcb1 PE=3 SV=1
Length = 373
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 3/136 (2%)
Query: 20 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 78
LVPIRLD+E EGQ+ +DAFTWN ++ +FA+ DL L P F+ I +I+ Q+
Sbjct: 174 LVPIRLDMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIPSAIRQQI 233
Query: 79 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 138
+ + + T ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G +
Sbjct: 234 ESYPTDAILEEQTDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELG-Q 291
Query: 139 DPEVGPAVAFAIREQL 154
E +A++IR QL
Sbjct: 292 GGEFVTTIAYSIRGQL 307
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 92 AEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIR 151
+E +VPI+LD+ + ++D F W++N PE FA C+D+ + PA+ AIR
Sbjct: 171 SEVLVPIRLDMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIPSAIR 230
Query: 152 EQL 154
+Q+
Sbjct: 231 QQI 233
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 9 SKAPVKPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFIT 68
+ A ++ D V I+L+I D F W+ S+ ++ FA + +L +F+T
Sbjct: 238 TDAILEEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGQGGEFVT 297
Query: 69 QIAQSIQTQLT 79
IA SI+ QL+
Sbjct: 298 TIAYSIRGQLS 308
>sp|Q6GQ82|SNF5_XENLA SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Xenopus laevis
GN=smarcb1 PE=2 SV=1
Length = 378
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 20 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 78
LVPIRLD+E +GQ+ +DAFTWN ++ +FA+ DL L P F+ IA +I+ Q+
Sbjct: 179 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQI 238
Query: 79 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 138
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 239 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 297
Query: 139 DPEVGPAVAFAIREQL 154
E +A++IR QL
Sbjct: 298 G-EFVTTIAYSIRGQL 312
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%)
Query: 93 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 152
E +VPI+LD+ ++ ++D F W++N PE FA C+D+ + PA+A AIR+
Sbjct: 177 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQ 236
Query: 153 QLYEIAIQSV 162
Q+ S+
Sbjct: 237 QIESYPTDSI 246
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 17 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 76
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 251 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 310
Query: 77 QLT 79
QL+
Sbjct: 311 QLS 313
>sp|Q6DFM1|SNF5_XENTR SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Xenopus tropicalis
GN=smarcb1 PE=2 SV=1
Length = 378
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 20 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 78
LVPIRLD+E +GQ+ +DAFTWN ++ +FA+ DL L P F+ IA +I+ Q+
Sbjct: 179 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQI 238
Query: 79 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 138
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 239 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGL- 296
Query: 139 DPEVGPAVAFAIREQL 154
E +A++IR QL
Sbjct: 297 GGEFVTTIAYSIRGQL 312
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 92 AEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIR 151
+E +VPI+LD+ ++ ++D F W++N PE FA C+D+ + PA+A AIR
Sbjct: 176 SEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIR 235
Query: 152 EQLYEIAIQSV 162
+Q+ S+
Sbjct: 236 QQIESYPTDSI 246
Score = 37.4 bits (85), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 17 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 76
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 251 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 310
Query: 77 QLT 79
QL+
Sbjct: 311 QLS 313
>sp|Q5BIN2|SNF5_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Bos taurus GN=SMARCB1
PE=2 SV=1
Length = 385
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 20 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 78
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 79 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 138
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 304
Query: 139 DPEVGPAVAFAIREQL 154
E +A++IR QL
Sbjct: 305 G-EFVTTIAYSIRGQL 319
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 93 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 152
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 153 QLYEIAIQSV 162
Q+ S+
Sbjct: 244 QIESYPTDSI 253
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 17 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 76
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 258 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 317
Query: 77 QLT 79
QL+
Sbjct: 318 QLS 320
>sp|Q9Z0H3|SNF5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Mus musculus
GN=Smarcb1 PE=1 SV=1
Length = 385
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 20 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 78
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 79 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 138
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 304
Query: 139 DPEVGPAVAFAIREQL 154
E +A++IR QL
Sbjct: 305 G-EFVTTIAYSIRGQL 319
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 93 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 152
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 153 QLYEIAIQSV 162
Q+ S+
Sbjct: 244 QIESYPTDSI 253
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 17 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 76
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 258 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 317
Query: 77 QLT 79
QL+
Sbjct: 318 QLS 320
>sp|Q12824|SNF5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Homo sapiens
GN=SMARCB1 PE=1 SV=2
Length = 385
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 20 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 78
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 186 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 245
Query: 79 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 138
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 246 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 304
Query: 139 DPEVGPAVAFAIREQL 154
E +A++IR QL
Sbjct: 305 G-EFVTTIAYSIRGQL 319
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 93 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 152
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 184 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 243
Query: 153 QLYEIAIQSV 162
Q+ S+
Sbjct: 244 QIESYPTDSI 253
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 17 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 76
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 258 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 317
Query: 77 QLT 79
QL+
Sbjct: 318 QLS 320
>sp|Q5ZK40|SNF5_CHICK SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily B member 1 OS=Gallus gallus
GN=SMARCB1 PE=2 SV=1
Length = 386
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 20 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP-QFITQIAQSIQTQL 78
LVPIRLD+E +GQ+ +DAFTWN ++ +F++ DL L P F+ IA +I+ Q+
Sbjct: 187 LVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQI 246
Query: 79 TEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIE 138
+ + + + ++++ IKL++ V + + D F WD++ E+ PE+FA C+++G+
Sbjct: 247 ESYPTDSILEDQSDQRVI-IKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 305
Query: 139 DPEVGPAVAFAIREQL 154
E +A++IR QL
Sbjct: 306 G-EFVTTIAYSIRGQL 320
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 93 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIRE 152
E +VPI+LD+ ++ ++D F W++N PE F+ C+D+ + PA+A AIR+
Sbjct: 185 EVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQ 244
Query: 153 QLYEIAIQSV 162
Q+ S+
Sbjct: 245 QIESYPTDSI 254
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 17 ADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQT 76
+D V I+L+I D F W+ S+ ++ FA + +L L +F+T IA SI+
Sbjct: 259 SDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRG 318
Query: 77 QLT 79
QL+
Sbjct: 319 QLS 321
>sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subunit SNF5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNF5 PE=1
SV=3
Length = 905
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 12/151 (7%)
Query: 16 TADNLVPIRLDIETEGQRY--KDAFTWNPSDPDSEVVVFAKRTVRDLKLP----PQFITQ 69
T++ LVPIRL+ + + R+ +D WN +D ++ F +RD + Q I
Sbjct: 453 TSEQLVPIRLEFDQDRDRFFLRDTLLWNKNDKLIKIEDFVDDMLRDYRFEDATREQHIDT 512
Query: 70 IAQSIQTQLTEFRSYE----GQDMYTAEKI-VPIKLDLRVNHTLIKDHFLWDLNNYESDP 124
I QSIQ Q+ EF+ QD + + + IKLD+ V + D F WD++N ++ P
Sbjct: 513 ICQSIQEQIQEFQGNPYIELNQDRLGGDDLRIRIKLDIVVGQNQLIDQFEWDISNSDNCP 572
Query: 125 EEFARTFCNDMGIEDPEVGPAVAFAIREQLY 155
EEFA + C ++ + E A+A +IREQ++
Sbjct: 573 EEFAESMCQELELPG-EFVTAIAHSIREQVH 602
>sp|Q754R8|SFH1_ASHGO Chromatin structure-remodeling complex subunit SFH1 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=SFH1 PE=3 SV=1
Length = 383
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 21/160 (13%)
Query: 5 ATSSSKAPVKPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPP 64
A SSS PV ++PIRL++E G + D FTWN +D + FA+ +DL
Sbjct: 146 AYSSSSQPV------VIPIRLNLEHNGHKIIDFFTWNLNDHSLTLEQFAQIYCQDLDFAH 199
Query: 65 QFI--TQIAQSIQTQLTEFRSYEGQDMYTAEKIVP-----IKLDLRVNHTLIKDHFLWDL 117
QI +I QL E+ + A +VP I L ++ L +D+F W+L
Sbjct: 200 NLSLQNQIVAAINDQLQEYETL-------ASVVVPDLHVIINLTCNLDSKLYEDNFEWNL 252
Query: 118 NNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEI 157
N+ PE+FA D+G+ E PA+A A+ E + +I
Sbjct: 253 NDQTLSPEQFAELVVQDLGLT-REFMPAIAHALYESILKI 291
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 85 EGQDMYTAEK---IVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGI-EDP 140
EG Y++ ++PI+L+L N I D F W+LN++ E+FA+ +C D+ +
Sbjct: 142 EGAGAYSSSSQPVVIPIRLNLEHNGHKIIDFFTWNLNDHSLTLEQFAQIYCQDLDFAHNL 201
Query: 141 EVGPAVAFAIREQLYE 156
+ + AI +QL E
Sbjct: 202 SLQNQIVAAINDQLQE 217
>sp|Q09699|SNF5_SCHPO SWI/SNF chromatin-remodeling complex subunit snf5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf5 PE=1 SV=1
Length = 632
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 43/183 (23%)
Query: 9 SKAPVKPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLP---PQ 65
SK PV +LVPIRL+I+ + + +D+FTWN D + FA++ D +P
Sbjct: 135 SKLPV-----DLVPIRLEIDADRYKLRDSFTWNLYDKCISLDQFAEQICIDYDIPLHNVH 189
Query: 66 FITQIAQSIQTQLTEFRSYEGQDMY---------TAEKI--------------------- 95
+ I++SIQ Q+ ++ + Q T+E +
Sbjct: 190 IVQNISKSIQAQINDYEPRKAQSNLSFVSDVSSSTSETVYAHEPSDSLAKASKQQIPTVQ 249
Query: 96 ----VPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIR 151
+ IKLD+ + + D F W+L ES EEFA C D+G+ E AVA +IR
Sbjct: 250 NDLRILIKLDITIGRLNLIDQFEWNLFAPESSAEEFATVMCLDLGLSG-EFCTAVAHSIR 308
Query: 152 EQL 154
EQ
Sbjct: 309 EQC 311
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 4 PATSSSKAPVK--PTADN--LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRD 59
P+ S +KA + PT N + I+LDI D F WN P+S FA D
Sbjct: 233 PSDSLAKASKQQIPTVQNDLRILIKLDITIGRLNLIDQFEWNLFAPESSAEEFATVMCLD 292
Query: 60 LKLPPQFITQIAQSIQTQLTEFRSY 84
L L +F T +A SI+ Q + Y
Sbjct: 293 LGLSGEFCTAVAHSIREQCQMYIKY 317
>sp|Q06168|SFH1_YEAST Chromatin structure-remodeling complex subunit SFH1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SFH1 PE=1 SV=1
Length = 426
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 2 KLPATSSSKAPVKPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLK 61
+L +KA ++PI LDIE G KD F WN +D FA +DL
Sbjct: 185 RLNTDQETKANANSGEAIMIPITLDIEHMGHTIKDQFLWNYNDDSISPEEFASIYCKDLD 244
Query: 62 LPPQFI-TQIAQSIQTQLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNY 120
+ + TQIA I+ QL + + ++ + ++ I L + +D+F W+LN+
Sbjct: 245 MTSATLQTQIANIIKEQLKDLENIAATEIMSDLHVI-INLTCNLQDRFFEDNFQWNLNDK 303
Query: 121 ESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAIQSVASAREIKISKKGRRGAEH 180
PE FA + D+G+ E P ++ ++ E + +KI K G H
Sbjct: 304 SLTPERFATSIVQDLGLT-REFIPLISQSLHETI-------------LKIKKDWVDG--H 347
Query: 181 AISSKGGGNALDLMKLFRYNSSVVRKRKEWYV-YEPIVDILSNEEVDALEAREDRNTR 237
I +A F Y S + E + P V+IL+ EE+ E ++RN R
Sbjct: 348 LIQDHVPNDA-----AFGYLSGIRLDIDELGSNWCPRVEILTKEEIQKREIEKERNLR 400
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 32/163 (19%)
Query: 11 APVKPTADNLVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQI 70
A + +D V I L + + ++D F WN +D FA V+DL L +FI I
Sbjct: 269 AATEIMSDLHVIINLTCNLQDRFFEDNFQWNLNDKSLTPERFATSIVQDLGLTREFIPLI 328
Query: 71 AQSIQTQLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFART 130
+QS+ E I+ IK D H LI+DH P + A
Sbjct: 329 SQSLH-----------------ETILKIKKDWVDGH-LIQDHV----------PNDAAFG 360
Query: 131 FCNDMGIEDPEVG----PAVAFAIREQLYEIAIQSVASAREIK 169
+ + + ++ E+G P V +E++ + I+ + R +K
Sbjct: 361 YLSGIRLDIDELGSNWCPRVEILTKEEIQKREIEKERNLRRLK 403
>sp|Q6CSR7|SFH1_KLULA Chromatin structure-remodeling complex subunit SFH1
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SFH1 PE=3
SV=1
Length = 442
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 20 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLP----PQF--ITQIAQS 73
+VPIRL++E G + D F WN +D FA +DL P P TQI
Sbjct: 210 MVPIRLNVEFSGHKLADFFMWNLNDHSMTPEQFATILCQDLDFPVLSNPNNSPYTQIISM 269
Query: 74 IQTQLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCN 133
I QL E+ + + + V I L ++ L D F W+LN+ PE+FA
Sbjct: 270 INEQLQEYETLAS--LQVPDLHVIINLTANLDSKLYDDTFEWNLNDDSLCPEQFAELVVQ 327
Query: 134 DMGIEDPEVGPAVAFAIREQLYEI 157
D+G++ E PA+A ++ E L ++
Sbjct: 328 DLGLQR-EFVPAIAHSLHESLLKV 350
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 21 VPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTE 80
V I L + + Y D F WN +D FA+ V+DL L +F+ IA S+ L +
Sbjct: 290 VIINLTANLDSKLYDDTFEWNLNDDSLCPEQFAELVVQDLGLQREFVPAIAHSLHESLLK 349
Query: 81 FR 82
+
Sbjct: 350 VK 351
>sp|Q9USM3|SFH1_SCHPO Chromatin structure-remodeling complex subunit sfh1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sfh1 PE=1 SV=1
Length = 418
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 15/148 (10%)
Query: 18 DNLVPIRLDIETEGQ-RYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQ-FITQIAQSIQ 75
D +PIRLDIE R KD F WN ++ VFA+ DL L + TQI+ SI+
Sbjct: 115 DVYIPIRLDIELPNNYRLKDTFLWNMNEQVMTPDVFAQILCADLDLSTNVYGTQISSSIR 174
Query: 76 TQLTEFRSY------EGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFAR 129
Q+ E+ +GQ+M +V + +++ D W+L + + PEEF+
Sbjct: 175 AQIEEYAPVAEVPMPKGQEM-----LVVFNIQVQLAQLSYNDQVEWNLTSPLT-PEEFSV 228
Query: 130 TFCNDMGIEDPEVGPAVAFAIREQLYEI 157
CND+G+ E P +A+AI E L ++
Sbjct: 229 LTCNDLGLSG-ESRPEIAYAIHECLLKL 255
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 64 PQFITQIAQSIQTQLTEFRSYEGQDMYTAEKIVPIKLDLRV-NHTLIKDHFLWDLNNYES 122
P+F T+ T + E +D+Y +PI+LD+ + N+ +KD FLW++N
Sbjct: 91 PRFATKTRHIYVTDEQLKCAAEERDVY-----IPIRLDIELPNNYRLKDTFLWNMNEQVM 145
Query: 123 DPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIA 158
P+ FA+ C D+ + G ++ +IR Q+ E A
Sbjct: 146 TPDVFAQILCADLDLSTNVYGTQISSSIRAQIEEYA 181
>sp|Q6C9N2|SFH1_YARLI Chromatin structure-remodeling complex subunit SFH1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SFH1 PE=3 SV=1
Length = 441
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 25/148 (16%)
Query: 19 NLVPIRLDIET-EGQRYKDAFTWNPSDPDSEVVV---FAKRTVRDLKLPPQFITQIAQSI 74
L+PIR+ +E + R +D F W D D +++ FA T DL +P + Q++ I
Sbjct: 204 TLIPIRVAVENIDVFRVQDFFLW---DADEKILTPEQFATLTCADLDVPIGYSAQMSAQI 260
Query: 75 QTQLTEFRSYEGQDMYTAEKIVP--------IKLDLRVNHTLIKDHFLWDLNNYESDPEE 126
+ QL E YTA +P ++L + V+ + +D F WDL+ + P+E
Sbjct: 261 KKQLAE---------YTAAPALPKDVEVHVIVELAVTVDKIVYEDKFEWDLSGEYATPQE 311
Query: 127 FARTFCNDMGIEDPEVGPAVAFAIREQL 154
FART D+G+ E PA+ + + E L
Sbjct: 312 FARTVVQDLGLGQ-EFYPAITYQLYETL 338
>sp|Q6FTV3|SFH1_CANGA Chromatin structure-remodeling complex subunit SFH1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SFH1 PE=3 SV=1
Length = 403
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 34/225 (15%)
Query: 20 LVPIRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDLKLPPQ--FITQIAQSIQTQ 77
L+PI L++E DAF WN +D V F DL L +QI SI Q
Sbjct: 177 LIPITLNVEHGNNTISDAFVWNVNDTSISVEDFVTTYCNDLGLYGNVSLHSQIVSSINEQ 236
Query: 78 LTEFRSYEGQDMYTAEKIVP-----IKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFC 132
+ E + A ++P + L + +D+F W+L++ PE+FA
Sbjct: 237 IQELEN-------VASLVIPDLEVVVNLTCTIQGKFFEDYFQWNLSDKSLSPEKFALIIV 289
Query: 133 NDMGIEDPEVGPAVAFAIREQLYEIAIQSVASAREIKISKKGRRGAEHAISSKGGGNALD 192
D+G+ E P +A ++ E L + + K+ G+ H + A
Sbjct: 290 ADLGLA-REFAPGIAHSLHEYL-------------LHVKKEWAEGSLHQDTVPNEA-AFG 334
Query: 193 LMKLFRYNSSVVRKRKEWYVYEPIVDILSNEEVDALEAREDRNTR 237
+ R N + + + P V+ L+ EE+ E ++RN R
Sbjct: 335 YLAGVRLNIDDLGAK-----WAPKVEYLTQEEIQKREIEKERNMR 374
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 81 FRSYEGQDMYTAEK---IVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGI 137
+R Y ++ T ++ ++PI L++ + I D F+W++N+ E+F T+CND+G+
Sbjct: 160 YRLYVPPELSTGQQEAILIPITLNVEHGNNTISDAFVWNVNDTSISVEDFVTTYCNDLGL 219
Query: 138 -EDPEVGPAVAFAIREQLYEIAIQSVAS 164
+ + + +I EQ+ E +++VAS
Sbjct: 220 YGNVSLHSQIVSSINEQIQE--LENVAS 245
>sp|A9MPQ0|KBAZ_SALAR D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=kbaZ PE=3 SV=2
Length = 431
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 141 EVGPAVAFAIREQLYEIAIQSVASAREIKISKKGRRGAEHAISS-------------KGG 187
+VGPA+ FA+RE L+ S+A+ E + K G H + S G
Sbjct: 284 KVGPALTFALREALF-----SLAAIEEELLPAKACSGLRHVLESVMLDRPEYWQNHYHGD 338
Query: 188 GNALDLMKLFRYNSSVVRKRKEW 210
GNA L + + Y+ R R W
Sbjct: 339 GNARRLARGYSYSD---RVRYYW 358
>sp|A8AQ21|KBAZ_CITK8 D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=kbaZ PE=3 SV=2
Length = 431
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 141 EVGPAVAFAIREQLYEIAIQSVASAREIKISKKGRRGAEHAISS-------------KGG 187
+VGPA+ FA+RE L+ S+A+ E + K G H + S G
Sbjct: 284 KVGPALTFALREALF-----SLAAIEEELLPAKTSSGLRHVLESVMLDRPEYWQSHYHGD 338
Query: 188 GNALDLMKLFRYNSSVVRKRKEW 210
GNA L + + Y+ R R W
Sbjct: 339 GNARRLARGYSYSD---RVRYYW 358
>sp|A4WEV0|KBAZ_ENT38 D-tagatose-1,6-bisphosphate aldolase subunit KbaZ OS=Enterobacter
sp. (strain 638) GN=kbaZ PE=3 SV=1
Length = 431
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 21/83 (25%)
Query: 141 EVGPAVAFAIREQLYEIAIQSVASAREIKISKKGRRGAEHAISS-------------KGG 187
+VGPA+ FA+RE L+ S+A+ E + K G H + + G
Sbjct: 284 KVGPALTFALREALF-----SLAAVEEELLPMKAGSGLRHVLENVMLDRPEYWQSHYHGD 338
Query: 188 GNALDLMKLFRYNSSVVRKRKEW 210
GNA L + + Y+ R R W
Sbjct: 339 GNARRLARGYSYSD---RVRYYW 358
>sp|B4JAL5|HOOK_DROGR Protein hook OS=Drosophila grimshawi GN=hk PE=3 SV=1
Length = 683
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 18/108 (16%)
Query: 71 AQSIQTQLTEFRSYEGQDMYTAEKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFART 130
A+++Q+Q+TE R Q + EK + + +D + N +L + +EFAR
Sbjct: 183 AKALQSQMTEERDAMAQKCFETEKKMLLLIDEKTN-------LQQELQKIQ---QEFARL 232
Query: 131 FCNDMGIEDPEVGPAVAFAIR--------EQLYEIAIQSVASAREIKI 170
N +G + +GP A ++R E + E +QS + ++KI
Sbjct: 233 EHNTIGDDGVSLGPIQAGSVRYNELRRQLELVKEELLQSEGAREDLKI 280
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,164,188
Number of Sequences: 539616
Number of extensions: 3428712
Number of successful extensions: 8088
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8007
Number of HSP's gapped (non-prelim): 65
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)