Query 026518
Match_columns 237
No_of_seqs 176 out of 378
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k89_A PLA2P, PLAP, phospholip 92.9 0.27 9.3E-06 36.2 6.3 39 38-79 33-71 (80)
2 2lru_A Serine/threonine-protei 84.7 0.2 6.7E-06 38.3 0.0 45 112-159 49-93 (98)
3 3pst_A Protein DOA1; protein d 71.7 7.2 0.00025 36.7 6.5 39 38-79 112-150 (425)
4 3l3f_X Protein DOA1, DOA1/UFD3 70.6 7.7 0.00026 35.6 6.3 39 38-79 49-87 (362)
5 2lru_A Serine/threonine-protei 71.4 1.1 3.6E-05 34.2 0.0 49 32-82 40-92 (98)
6 2k89_A PLA2P, PLAP, phospholip 67.9 15 0.0005 26.9 6.1 53 96-154 18-70 (80)
7 2h7b_A Core-binding factor, ML 40.8 17 0.00059 27.8 2.7 44 41-84 37-85 (105)
8 2p6v_A Transcription initiatio 25.3 49 0.0017 25.6 2.9 24 41-64 52-75 (114)
9 3l3f_X Protein DOA1, DOA1/UFD3 23.9 1.1E+02 0.0039 27.8 5.6 56 93-154 31-86 (362)
10 2qm4_A Non-homologous END-join 21.2 1.2E+02 0.0041 26.0 4.9 107 23-134 27-140 (235)
No 1
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=92.88 E-value=0.27 Score=36.20 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=34.9
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 026518 38 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLT 79 (237)
Q Consensus 38 F~WNlne~~itpe~FA~~lc~Dl~lp~~~~~~I~~sI~~Qi~ 79 (237)
.-.|.+| .|-.-|+.+|++.+||..|..+|++-|.+...
T Consensus 33 LpyN~~d---nP~~aAqkFi~~n~Lp~~yldqI~~FI~~N~~ 71 (80)
T 2k89_A 33 LPYNTSD---DPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTK 71 (80)
T ss_dssp EEECTTS---CHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHS
T ss_pred cCccCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 4578888 79999999999999999999999999998654
No 2
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=84.69 E-value=0.2 Score=38.28 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=39.0
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Q 026518 112 HFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAI 159 (237)
Q Consensus 112 ~FeWdL~~~~~tPE~FA~~lc~DLgL~~~ef~~aIa~sIreQl~~~~~ 159 (237)
+|..||.. .+|+.+|.-+|..+.|+ .+=...||..|+.++..+++
T Consensus 49 eF~Fdle~--Dta~eVA~EMVe~~~l~-e~D~~~VaklI~~~v~~~~r 93 (98)
T 2lru_A 49 EFSFDLER--DVPEDVAQEMVESGYVC-EGDHKTMAKAIKDRVSLIKR 93 (98)
Confidence 68899975 69999999999999999 47788999999999876654
No 3
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=71.69 E-value=7.2 Score=36.67 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=34.6
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 026518 38 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLT 79 (237)
Q Consensus 38 F~WNlne~~itpe~FA~~lc~Dl~lp~~~~~~I~~sI~~Qi~ 79 (237)
.-.|.+| .|-.-|+.+|.+.+||..|.+||++-|.+...
T Consensus 112 LpyN~~~---np~~~A~~Fi~~~~L~~~y~~qi~~FI~~N~~ 150 (425)
T 3pst_A 112 LPINVSD---NPYTAADNFLARYELPMSYRDQVVQLILKNTN 150 (425)
T ss_dssp EEECTTC---CHHHHHHHHHHHHTCCGGGHHHHHHHHHHHC-
T ss_pred CCccCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 5678888 79999999999999999999999999988654
No 4
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=70.57 E-value=7.7 Score=35.65 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=35.0
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 026518 38 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLT 79 (237)
Q Consensus 38 F~WNlne~~itpe~FA~~lc~Dl~lp~~~~~~I~~sI~~Qi~ 79 (237)
.-.|.+| .|..-|+.+|.+.+||..|.+||++-|.+...
T Consensus 49 lpyN~~~---np~~~A~~F~~~~~l~~~y~~~i~~fi~~n~~ 87 (362)
T 3l3f_X 49 LPINVSD---NPYTAADNFLARYELPMSYRDQVVQFILKNTN 87 (362)
T ss_dssp EEECTTS---CHHHHHHHHHHHTTCCGGGHHHHHHHHHHHCC
T ss_pred CCCcCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 6678888 79999999999999999999999999988544
No 5
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=71.38 E-value=1.1 Score=34.23 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=40.2
Q ss_pred cEEEE----EEEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q 026518 32 QRYKD----AFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFR 82 (237)
Q Consensus 32 ~rlrD----~F~WNlne~~itpe~FA~~lc~Dl~lp~~~~~~I~~sI~~Qi~ey~ 82 (237)
.|.|| .|..|+.-. |++.+|+.||+.+.+|..=...|+.+|+.|+.-+.
T Consensus 40 gk~KeNeaIeF~Fdle~D--ta~eVA~EMVe~~~l~e~D~~~VaklI~~~v~~~~ 92 (98)
T 2lru_A 40 GKYKDNEAIEFSFDLERD--VPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIK 92 (98)
Confidence 45664 477787744 89999999999999999888999999999886543
No 6
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=67.88 E-value=15 Score=26.86 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=36.3
Q ss_pred eeeEEEEEeCCeeeeeceeecCCCCCCCHHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 026518 96 VPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQL 154 (237)
Q Consensus 96 v~I~Ldi~~~~~~l~D~FeWdL~~~~~tPE~FA~~lc~DLgL~~~ef~~aIa~sIreQl 154 (237)
..+.+||.-|+..+ +.-.|.+ -+|-.=|+.+|.+.+|| ..|..+||.-|....
T Consensus 18 yVFdVdi~dG~~~l--kLpyN~~---dnP~~aAqkFi~~n~Lp-~~yldqI~~FI~~N~ 70 (80)
T 2k89_A 18 YVFSIDVNEGGPSY--KLPYNTS---DDPWLTAYNFLQKNDLN-PMFLDQVAKFIIDNT 70 (80)
T ss_dssp EEEEECCSSSCSCE--EEEECTT---SCHHHHHHHHHHHHTCC-TTHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCccc--ccCccCC---CCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhC
Confidence 33444444333322 2334554 48999999999999999 699999998886543
No 7
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=40.76 E-value=17 Score=27.80 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=33.0
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHHHHhhcc
Q 026518 41 NPSDPDSEVVVFAKRTVRDLKLPP-----QFITQIAQSIQTQLTEFRSY 84 (237)
Q Consensus 41 Nlne~~itpe~FA~~lc~Dl~lp~-----~~~~~I~~sI~~Qi~ey~~~ 84 (237)
++-+..|+||+|...+=+.+..|+ .|...-.-+.|.++..-+..
T Consensus 37 ~Ll~~~i~~EeFt~~Lq~~lns~pqP~lvPFLK~sLp~Lr~~l~~~a~~ 85 (105)
T 2h7b_A 37 GLVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHAARL 85 (105)
T ss_dssp HHHTSSCCHHHHHHHHHHHSSSSCCSSSHHHHHTTHHHHHHHHHHHGGG
T ss_pred HHHhCCCCHHHHHHHHHHHhcCCCCcchhHHHHHhHHHHHHHHHHHHHH
Confidence 345778999999999999999975 46555566777777654443
No 8
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=25.28 E-value=49 Score=25.62 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.0
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCh
Q 026518 41 NPSDPDSEVVVFAKRTVRDLKLPP 64 (237)
Q Consensus 41 Nlne~~itpe~FA~~lc~Dl~lp~ 64 (237)
+|-+..|+||+|...|-+.+..|+
T Consensus 52 ~Ll~~~i~~EeFt~~Lq~~lns~p 75 (114)
T 2p6v_A 52 NLLDGXIEAEDFTSRLYRELNSSP 75 (114)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTCCC
T ss_pred HHHHccCCHHHHHHHHHHHHcCCC
Confidence 455788999999999999999975
No 9
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=23.89 E-value=1.1e+02 Score=27.79 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=41.1
Q ss_pred ceeeeeEEEEEeCCeeeeeceeecCCCCCCCHHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 026518 93 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQL 154 (237)
Q Consensus 93 e~~v~I~Ldi~~~~~~l~D~FeWdL~~~~~tPE~FA~~lc~DLgL~~~ef~~aIa~sIreQl 154 (237)
++-..+.+||.-|+-.+. .-.|.++ +|-.=|+.+|.+.+|| ..|..+|+.-|.+..
T Consensus 31 ~yDyvf~vdi~~g~~~~k--lpyN~~~---np~~~A~~F~~~~~l~-~~y~~~i~~fi~~n~ 86 (362)
T 3l3f_X 31 TYDYVFDVDIEDGKPPLK--LPINVSD---NPYTAADNFLARYELP-MSYRDQVVQFILKNT 86 (362)
T ss_dssp EESEEEEECCSTTSCCEE--EEECTTS---CHHHHHHHHHHHTTCC-GGGHHHHHHHHHHHC
T ss_pred ccceEEEEEcCCCCcccc--CCCcCCC---CHHHHHHHHHHHcCCC-HHHHHHHHHHHHhcC
Confidence 344456666666554444 4555554 8999999999999999 699999998886654
No 10
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=21.24 E-value=1.2e+02 Score=25.99 Aligned_cols=107 Identities=11% Similarity=0.218 Sum_probs=60.9
Q ss_pred eEEEeeeCCcEEEEEEEecCCCCCCCHHHHHHHHHHHc---CCCh-HHHHHHHHHHHHHHHHhhcccCCcc---CCCcee
Q 026518 23 IRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDL---KLPP-QFITQIAQSIQTQLTEFRSYEGQDM---YTAEKI 95 (237)
Q Consensus 23 IrLd~e~~~~rlrD~F~WNlne~~itpe~FA~~lc~Dl---~lp~-~~~~~I~~sI~~Qi~ey~~~~~~~~---~~~e~~ 95 (237)
|+..+..+||.+.=|=+=|+=-..++.+.+-...-++- .+|+ .+..++...++.-|.+-..-....+ ..++ .
T Consensus 27 vk~~ft~~sY~l~lTDL~~vW~E~l~~~~I~~Rak~lN~rl~i~~s~~~~~l~~ll~~aL~~~~~~~~~sls~~~~~~-~ 105 (235)
T 2qm4_A 27 AKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAAFLCHLDNLLRPLLKDAAHPSEATFSCDCVAD-A 105 (235)
T ss_dssp EEEEEETTEEEEEEECSSCEEEEEECHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHCSCSCCCCEEEEEEETT-E
T ss_pred EEEEecCCcEEEEEEccchhceeecCHHHHHHHHHHhCcCCCCChhHhHHHHHHHHHHHHhcCCCCcceEEEecCCCC-c
Confidence 67777777777532211122133455666655544433 3565 5666666666654421111000000 0122 3
Q ss_pred eeeEEEEEeCCeeeeeceeecCCCCCCCHHHHHHHHHHH
Q 026518 96 VPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCND 134 (237)
Q Consensus 96 v~I~Ldi~~~~~~l~D~FeWdL~~~~~tPE~FA~~lc~D 134 (237)
+.+++.+.+.+ + .|.|.++-...+|..|++.++.-
T Consensus 106 L~L~~~~~L~~--l--PlkW~fhL~~~~~s~l~~~LilP 140 (235)
T 2qm4_A 106 LILRVRSELSG--L--PFYWNFHCMLASPSLVSQHLIRP 140 (235)
T ss_dssp EEEEEEEEETT--E--EEEEEEEEEECCHHHHHHHTHHH
T ss_pred EEEEEEEECCC--C--CEEEEEEEeeCCHHHHHHHHHHH
Confidence 44778888877 5 99999999899999998888764
Done!