Query 026518
Match_columns 237
No_of_seqs 176 out of 378
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 15:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026518.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026518hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1aisb2 a.74.1.2 (B:1206-1300) 66.0 3.4 0.00025 28.3 4.2 35 47-82 1-35 (95)
2 d1aisb2 a.74.1.2 (B:1206-1300) 60.9 3.1 0.00022 28.5 3.2 17 122-138 1-17 (95)
3 d1vola2 a.74.1.2 (A:208-316) T 54.2 6.6 0.00048 27.4 4.1 36 46-82 1-36 (109)
4 d1vola2 a.74.1.2 (A:208-316) T 44.8 7.5 0.00054 27.2 3.1 17 122-138 2-18 (109)
5 d1e0ea_ a.4.10.1 (A:) N-termin 31.3 22 0.0016 21.6 3.2 21 53-73 19-39 (46)
6 d1f46a_ d.129.4.1 (A:) Cell-di 29.8 13 0.00092 27.4 2.3 33 51-83 98-136 (139)
7 d2p6va1 a.277.1.1 (A:582-678) 29.0 18 0.0013 25.5 2.9 24 41-64 44-67 (97)
8 d1k6ya1 a.4.10.1 (A:1-46) N-te 27.6 25 0.0018 21.3 3.1 21 53-73 19-39 (46)
9 d2pp4a1 a.277.1.1 (A:119-225) 22.1 28 0.002 24.9 2.8 24 41-64 36-59 (107)
10 d2p6va1 a.277.1.1 (A:582-678) 18.9 30 0.0022 24.3 2.3 27 116-142 44-70 (97)
No 1
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=65.98 E-value=3.4 Score=28.26 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q 026518 47 SEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFR 82 (237)
Q Consensus 47 itpe~FA~~lc~Dl~lp~~~~~~I~~sI~~Qi~ey~ 82 (237)
|.|+.|-..+|..|+||..+.. .+..|-.++.+..
T Consensus 1 i~P~d~I~R~~~~L~L~~~i~~-~A~~i~~~~~~~~ 35 (95)
T d1aisb2 1 VKPTDYVNKFADELGLSEKVRR-RAIEILDEAYKRG 35 (95)
T ss_dssp CCGGGGHHHHHHHHTCCHHHHH-HHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCcCHHHHH-HHHHHHHHHHHcC
Confidence 5799999999999999986433 4445555555543
No 2
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=60.88 E-value=3.1 Score=28.50 Aligned_cols=17 Identities=18% Similarity=0.786 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHcCCC
Q 026518 122 SDPEEFARTFCNDMGIE 138 (237)
Q Consensus 122 ~tPE~FA~~lc~DLgL~ 138 (237)
+.|++|-..+|..||||
T Consensus 1 i~P~d~I~R~~~~L~L~ 17 (95)
T d1aisb2 1 VKPTDYVNKFADELGLS 17 (95)
T ss_dssp CCGGGGHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHcCcC
Confidence 46999999999999998
No 3
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.23 E-value=6.6 Score=27.44 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q 026518 46 DSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFR 82 (237)
Q Consensus 46 ~itpe~FA~~lc~Dl~lp~~~~~~I~~sI~~Qi~ey~ 82 (237)
.|||..|...+|..|+||... ...|..|-+++.+..
T Consensus 1 ~i~~~d~i~Rf~s~L~L~~~i-~~~A~~i~~~~~~~~ 36 (109)
T d1vola2 1 LITTGDFMSRFCSNLCLPKQV-QMAATHIARKAVELD 36 (109)
T ss_dssp CCCGGGTHHHHHHHHTCCHHH-HHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCcCHHH-HHHHHHHHHHHHHcC
Confidence 489999999999999999753 334555555555443
No 4
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.80 E-value=7.5 Score=27.16 Aligned_cols=17 Identities=18% Similarity=0.604 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHcCCC
Q 026518 122 SDPEEFARTFCNDMGIE 138 (237)
Q Consensus 122 ~tPE~FA~~lc~DLgL~ 138 (237)
++|..|-..+|..||||
T Consensus 2 i~~~d~i~Rf~s~L~L~ 18 (109)
T d1vola2 2 ITTGDFMSRFCSNLCLP 18 (109)
T ss_dssp CCGGGTHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHcCcC
Confidence 68999999999999998
No 5
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=31.33 E-value=22 Score=21.65 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=17.6
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 026518 53 AKRTVRDLKLPPQFITQIAQS 73 (237)
Q Consensus 53 A~~lc~Dl~lp~~~~~~I~~s 73 (237)
+..|..+++||...+.+|+++
T Consensus 19 ~~~L~~~F~lp~~vAr~IV~~ 39 (46)
T d1e0ea_ 19 VKELSHKFGIPNLVARQIVNS 39 (46)
T ss_dssp HHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 578899999999888888764
No 6
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.80 E-value=13 Score=27.35 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCC------hHHHHHHHHHHHHHHHHhhc
Q 026518 51 VFAKRTVRDLKLP------PQFITQIAQSIQTQLTEFRS 83 (237)
Q Consensus 51 ~FA~~lc~Dl~lp------~~~~~~I~~sI~~Qi~ey~~ 83 (237)
.+|+.+|++|+-- ..+-.+-...||+||.+|..
T Consensus 98 ~~a~~la~~l~g~l~D~~r~~lt~q~i~~~R~~i~e~e~ 136 (139)
T d1f46a_ 98 QSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKD 136 (139)
T ss_dssp HHHHHHHHHHTCEEECTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999852 15777888899999999975
No 7
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.99 E-value=18 Score=25.47 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.0
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCh
Q 026518 41 NPSDPDSEVVVFAKRTVRDLKLPP 64 (237)
Q Consensus 41 Nlne~~itpe~FA~~lc~Dl~lp~ 64 (237)
|+-+..++||+|...|=+.+..|+
T Consensus 44 ~L~~~~i~~EEF~~~Lq~~lns~p 67 (97)
T d2p6va1 44 NLLDGKIEAEDFTSRLYRELNSSP 67 (97)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTCCC
T ss_pred HHHhCCcCHHHHHHHHHHHhcCCC
Confidence 455778999999999999999975
No 8
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=27.62 E-value=25 Score=21.34 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=17.4
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 026518 53 AKRTVRDLKLPPQFITQIAQS 73 (237)
Q Consensus 53 A~~lc~Dl~lp~~~~~~I~~s 73 (237)
+..|+..++||...+.+|+++
T Consensus 19 ~~~L~~~F~ip~~vAr~IV~~ 39 (46)
T d1k6ya1 19 WRAMASDFNLPPVVAKEIVAS 39 (46)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 578999999998888887754
No 9
>d2pp4a1 a.277.1.1 (A:119-225) ETO {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.08 E-value=28 Score=24.86 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=20.9
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCh
Q 026518 41 NPSDPDSEVVVFAKRTVRDLKLPP 64 (237)
Q Consensus 41 Nlne~~itpe~FA~~lc~Dl~lp~ 64 (237)
++-+..+|+|+|...|-+.+..|+
T Consensus 36 ~L~~~~i~~EeF~~~Lq~~lns~p 59 (107)
T d2pp4a1 36 GLVNSTLTIEEFHSKLQEATNFPL 59 (107)
T ss_dssp HHHTTCSCHHHHHHHHHHHHCCCC
T ss_pred HHHhCCcCHHHHHHHHHHHhcCCC
Confidence 445778999999999999999975
No 10
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.86 E-value=30 Score=24.29 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=21.7
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCCCCh
Q 026518 116 DLNNYESDPEEFARTFCNDMGIEDPEV 142 (237)
Q Consensus 116 dL~~~~~tPE~FA~~lc~DLgL~~~ef 142 (237)
+|.+..++||+|...+=..|..+.+.|
T Consensus 44 ~L~~~~i~~EEF~~~Lq~~lns~pqP~ 70 (97)
T d2p6va1 44 NLLDGKIEAEDFTSRLYRELNSSPQPY 70 (97)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTCCCCTT
T ss_pred HHHhCCcCHHHHHHHHHHHhcCCCCch
Confidence 344567999999999999999986544
Done!