Query 026522
Match_columns 237
No_of_seqs 177 out of 1126
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02561 triosephosphate isome 100.0 3.1E-84 6.8E-89 574.8 24.5 223 1-224 1-223 (253)
2 KOG1643 Triosephosphate isomer 100.0 2.1E-84 4.5E-89 551.9 21.2 221 1-224 1-221 (247)
3 PRK14566 triosephosphate isome 100.0 1.7E-83 3.7E-88 571.3 24.4 220 2-225 3-232 (260)
4 PRK14567 triosephosphate isome 100.0 2.1E-83 4.5E-88 569.1 24.1 220 4-226 2-223 (253)
5 PTZ00333 triosephosphate isome 100.0 4.6E-83 9.9E-88 568.4 24.0 222 1-224 2-226 (255)
6 PRK00042 tpiA triosephosphate 100.0 7.2E-83 1.6E-87 565.8 24.0 219 3-224 1-222 (250)
7 PRK15492 triosephosphate isome 100.0 9E-83 1.9E-87 567.8 24.5 222 2-225 1-232 (260)
8 PF00121 TIM: Triosephosphate 100.0 1.9E-83 4.1E-88 567.9 19.3 219 5-225 1-222 (244)
9 cd00311 TIM Triosephosphate is 100.0 1.4E-82 3E-87 561.7 23.8 219 5-226 1-220 (242)
10 COG0149 TpiA Triosephosphate i 100.0 1.8E-82 3.9E-87 560.1 24.0 220 2-224 1-221 (251)
11 PLN02429 triosephosphate isome 100.0 4.9E-82 1.1E-86 573.6 24.3 221 1-224 62-282 (315)
12 PRK14905 triosephosphate isome 100.0 2.9E-79 6.2E-84 565.8 24.2 223 1-225 1-233 (355)
13 PRK14565 triosephosphate isome 100.0 9.6E-79 2.1E-83 535.0 23.7 207 4-224 2-208 (237)
14 PRK13962 bifunctional phosphog 100.0 1.2E-78 2.6E-83 594.9 23.7 221 2-225 396-619 (645)
15 TIGR00419 tim triosephosphate 100.0 7E-70 1.5E-74 470.1 20.3 187 6-224 1-188 (205)
16 PRK04302 triosephosphate isome 100.0 5.7E-46 1.2E-50 323.6 20.0 187 2-224 1-192 (223)
17 PRK13111 trpA tryptophan synth 97.8 0.00012 2.6E-09 65.7 9.0 112 79-227 108-223 (258)
18 cd04729 NanE N-acetylmannosami 97.2 0.046 1E-06 47.2 17.3 166 18-226 27-199 (219)
19 PLN02591 tryptophan synthase 97.2 0.0043 9.3E-08 55.6 10.9 105 81-225 99-210 (250)
20 PRK11840 bifunctional sulfur c 97.0 0.0031 6.8E-08 58.4 8.2 124 68-227 140-272 (326)
21 PRK13125 trpA tryptophan synth 96.9 0.037 8E-07 48.9 13.8 171 14-226 14-207 (244)
22 TIGR01163 rpe ribulose-phospha 96.8 0.15 3.3E-06 43.0 16.5 115 81-226 72-186 (210)
23 cd04724 Tryptophan_synthase_al 96.7 0.021 4.6E-07 50.5 10.8 106 81-225 97-208 (242)
24 cd00429 RPE Ribulose-5-phospha 96.2 0.25 5.4E-06 41.6 14.2 114 81-226 73-187 (211)
25 cd04722 TIM_phosphate_binding 95.5 1.1 2.4E-05 36.2 16.2 136 58-226 56-192 (200)
26 TIGR00262 trpA tryptophan synt 95.2 0.52 1.1E-05 42.2 12.8 107 81-226 108-220 (256)
27 cd04728 ThiG Thiazole synthase 95.2 0.079 1.7E-06 47.5 7.4 120 69-227 67-198 (248)
28 cd00331 IGPS Indole-3-glycerol 95.1 0.29 6.3E-06 42.0 10.7 108 80-226 86-194 (217)
29 PRK05581 ribulose-phosphate 3- 95.1 0.83 1.8E-05 38.9 13.3 111 82-225 78-190 (220)
30 PRK00208 thiG thiazole synthas 95.0 0.1 2.2E-06 46.9 7.4 120 69-227 67-198 (250)
31 TIGR03128 RuMP_HxlA 3-hexulose 94.5 2.5 5.5E-05 35.7 15.0 169 16-230 10-183 (206)
32 PRK08883 ribulose-phosphate 3- 93.7 1 2.3E-05 39.4 11.0 118 81-229 74-191 (220)
33 cd04726 KGPDC_HPS 3-Keto-L-gul 93.0 2.7 6E-05 35.2 12.3 163 15-228 10-181 (202)
34 cd04730 NPD_like 2-Nitropropan 92.3 2.4 5.1E-05 36.5 11.1 107 79-226 71-178 (236)
35 TIGR00259 thylakoid_BtpA membr 92.2 0.13 2.9E-06 46.3 3.3 142 59-229 79-224 (257)
36 PF03437 BtpA: BtpA family; I 91.5 0.19 4.2E-06 45.2 3.5 141 59-229 80-224 (254)
37 PF01183 Glyco_hydro_25: Glyco 91.3 1.2 2.6E-05 37.1 7.9 118 75-211 6-128 (181)
38 PLN02334 ribulose-phosphate 3- 90.8 7.7 0.00017 33.7 12.8 115 81-227 81-196 (229)
39 CHL00200 trpA tryptophan synth 90.3 4.5 9.8E-05 36.5 11.2 106 81-225 112-223 (263)
40 PRK11572 copper homeostasis pr 90.1 3.7 8.1E-05 36.9 10.3 146 41-226 35-191 (248)
41 COG0434 SgcQ Predicted TIM-bar 89.7 0.39 8.4E-06 43.1 3.7 43 173-230 188-230 (263)
42 PRK13307 bifunctional formalde 89.5 6.2 0.00014 37.7 11.9 115 69-229 235-354 (391)
43 PRK07028 bifunctional hexulose 88.8 5 0.00011 38.3 10.9 114 77-229 70-186 (430)
44 PRK00043 thiE thiamine-phospha 88.6 6.4 0.00014 33.1 10.4 113 80-230 73-185 (212)
45 COG3142 CutC Uncharacterized p 87.8 4.9 0.00011 35.9 9.3 145 41-222 35-188 (241)
46 cd06525 GH25_Lyc-like Lyc mura 87.5 16 0.00034 30.6 12.8 112 74-211 7-125 (184)
47 cd06412 GH25_CH-type CH-type ( 87.2 17 0.00038 30.8 12.9 117 75-211 9-136 (199)
48 PTZ00170 D-ribulose-5-phosphat 86.9 9.3 0.0002 33.4 10.6 130 59-228 65-196 (228)
49 PRK00278 trpC indole-3-glycero 86.5 13 0.00028 33.3 11.5 136 46-229 100-236 (260)
50 PF03932 CutC: CutC family; I 86.2 4.3 9.3E-05 35.3 8.0 144 41-224 34-189 (201)
51 cd06413 GH25_muramidase_1 Unch 85.6 21 0.00044 30.1 13.3 115 75-211 11-132 (191)
52 cd00405 PRAI Phosphoribosylant 84.2 7.3 0.00016 33.1 8.5 22 204-226 152-173 (203)
53 TIGR00433 bioB biotin syntheta 80.9 36 0.00078 30.2 12.0 100 81-193 126-239 (296)
54 cd00452 KDPG_aldolase KDPG and 79.6 36 0.00078 28.6 14.8 152 16-230 14-168 (190)
55 COG0135 TrpF Phosphoribosylant 79.5 6.8 0.00015 34.3 6.6 118 73-232 57-179 (208)
56 PRK08091 ribulose-phosphate 3- 79.5 32 0.00069 30.5 10.9 119 81-230 84-204 (228)
57 PRK01130 N-acetylmannosamine-6 79.3 39 0.00085 28.9 16.8 170 17-227 22-196 (221)
58 PRK14057 epimerase; Provisiona 78.8 50 0.0011 29.8 12.4 117 81-230 91-218 (254)
59 PF01729 QRPTase_C: Quinolinat 78.3 5.1 0.00011 33.8 5.3 39 178-226 110-148 (169)
60 PRK08057 cobalt-precorrin-6x r 78.3 3.6 7.7E-05 36.8 4.6 52 71-131 173-224 (248)
61 cd06419 GH25_muramidase_2 Unch 75.7 50 0.0011 28.1 12.2 113 75-211 16-135 (190)
62 TIGR03234 OH-pyruv-isom hydrox 75.4 12 0.00027 32.4 7.2 54 7-64 3-57 (254)
63 COG0635 HemN Coproporphyrinoge 75.2 80 0.0017 30.3 13.2 159 6-196 92-264 (416)
64 cd00599 GH25_muramidase Endo-N 75.1 46 0.00099 27.5 11.1 113 74-211 7-126 (186)
65 cd04723 HisA_HisF Phosphoribos 73.2 38 0.00083 29.6 9.7 115 80-226 92-211 (233)
66 PRK09545 znuA high-affinity zi 73.1 19 0.00041 33.0 8.1 53 159-222 203-270 (311)
67 cd04732 HisA HisA. Phosphorib 71.7 61 0.0013 27.7 10.6 117 81-229 88-213 (234)
68 PRK07455 keto-hydroxyglutarate 71.0 10 0.00022 32.3 5.4 26 204-230 152-177 (187)
69 TIGR00715 precor6x_red precorr 68.1 5.8 0.00013 35.6 3.4 80 38-131 153-232 (256)
70 PF00834 Ribul_P_3_epim: Ribul 67.4 20 0.00044 30.9 6.6 117 80-229 72-190 (201)
71 cd02905 Macro_GDAP2_like Macro 67.2 11 0.00025 30.5 4.7 29 162-193 110-140 (140)
72 PRK09997 hydroxypyruvate isome 66.2 45 0.00097 29.1 8.7 54 7-64 4-58 (258)
73 cd01569 PBEF_like pre-B-cell c 65.9 8.7 0.00019 37.0 4.3 45 178-223 292-344 (407)
74 PF03982 DAGAT: Diacylglycerol 65.8 21 0.00046 32.7 6.7 84 115-199 173-281 (297)
75 TIGR03551 F420_cofH 7,8-dideme 65.4 96 0.0021 28.6 11.1 136 77-230 137-296 (343)
76 PRK01060 endonuclease IV; Prov 65.4 34 0.00073 30.0 7.8 27 160-186 139-165 (281)
77 COG0159 TrpA Tryptophan syntha 63.2 1.2E+02 0.0026 27.6 11.5 110 81-228 115-229 (265)
78 PRK07428 nicotinate-nucleotide 63.2 34 0.00073 31.4 7.5 41 176-226 224-264 (288)
79 TIGR03699 mena_SCO4550 menaqui 62.2 1.1E+02 0.0023 28.0 10.8 107 78-193 143-266 (340)
80 cd01137 PsaA Metal binding pro 61.9 50 0.0011 29.7 8.4 48 144-191 162-224 (287)
81 cd06524 GH25_YegX-like YegX is 61.3 97 0.0021 25.9 12.7 48 74-124 7-58 (194)
82 PRK08745 ribulose-phosphate 3- 61.1 1.2E+02 0.0025 26.7 11.4 116 81-227 78-193 (223)
83 cd06416 GH25_Lys1-like Lys-1 i 60.9 1E+02 0.0022 25.9 10.6 47 75-124 9-55 (196)
84 TIGR02129 hisA_euk phosphoribo 60.6 12 0.00026 33.7 4.0 23 205-228 77-99 (253)
85 cd06414 GH25_LytC-like The Lyt 60.6 1E+02 0.0022 25.9 13.4 120 75-211 9-134 (191)
86 TIGR03772 anch_rpt_subst ancho 60.4 45 0.00098 32.8 8.2 82 108-191 317-418 (479)
87 PRK09722 allulose-6-phosphate 60.3 1.2E+02 0.0027 26.8 12.7 118 81-228 75-192 (229)
88 PRK13347 coproporphyrinogen II 60.1 1.7E+02 0.0036 28.2 12.2 109 79-196 153-279 (453)
89 PF00697 PRAI: N-(5'phosphorib 59.6 3.4 7.4E-05 35.3 0.3 42 169-224 124-166 (197)
90 COG0269 SgbH 3-hexulose-6-phos 59.5 1.3E+02 0.0028 26.7 11.3 119 74-226 66-185 (217)
91 cd00564 TMP_TenI Thiamine mono 58.7 97 0.0021 25.0 10.2 25 204-229 150-174 (196)
92 PRK09198 putative nicotinate p 58.1 15 0.00032 36.0 4.4 43 180-223 297-347 (463)
93 PRK06934 flavodoxin; Provision 57.5 9.2 0.0002 33.8 2.7 57 108-170 74-141 (221)
94 TIGR01334 modD putative molybd 57.5 44 0.00095 30.5 7.2 40 176-225 216-255 (277)
95 PRK04169 geranylgeranylglycery 56.5 16 0.00034 32.5 4.0 41 172-226 165-206 (232)
96 TIGR00693 thiE thiamine-phosph 56.2 46 0.001 27.6 6.7 58 160-228 117-175 (196)
97 PRK01222 N-(5'-phosphoribosyl) 55.8 94 0.002 26.8 8.7 20 205-225 155-174 (210)
98 cd00851 MTH1175 This uncharact 55.6 24 0.00052 26.0 4.4 46 76-133 51-96 (103)
99 cd00019 AP2Ec AP endonuclease 55.4 48 0.001 29.1 7.0 78 110-189 87-165 (279)
100 cd07938 DRE_TIM_HMGL 3-hydroxy 55.2 1.6E+02 0.0034 26.5 11.1 41 114-154 79-122 (274)
101 PRK13958 N-(5'-phosphoribosyl) 55.1 10 0.00022 32.9 2.5 40 171-228 136-175 (207)
102 cd04740 DHOD_1B_like Dihydroor 55.0 1.6E+02 0.0034 26.3 11.4 51 79-129 106-162 (296)
103 smart00518 AP2Ec AP endonuclea 54.6 62 0.0014 28.2 7.6 13 36-48 25-37 (273)
104 PRK13209 L-xylulose 5-phosphat 53.7 50 0.0011 29.0 6.8 60 108-168 99-159 (283)
105 cd06542 GH18_EndoS-like Endo-b 53.4 99 0.0021 26.9 8.6 64 106-170 49-117 (255)
106 cd02812 PcrB_like PcrB_like pr 53.2 20 0.00044 31.5 4.1 41 172-226 156-197 (219)
107 PRK08508 biotin synthase; Prov 53.2 1.7E+02 0.0037 26.2 10.4 106 76-193 97-217 (279)
108 cd01572 QPRTase Quinolinate ph 53.1 39 0.00084 30.5 6.1 47 159-227 202-248 (268)
109 TIGR01769 GGGP geranylgeranylg 53.1 23 0.0005 30.8 4.4 21 205-226 177-198 (205)
110 cd00377 ICL_PEPM Members of th 52.6 68 0.0015 28.3 7.5 74 15-100 157-231 (243)
111 PF02579 Nitro_FeMo-Co: Dinitr 51.8 24 0.00052 25.5 3.8 50 72-133 37-86 (94)
112 PRK04180 pyridoxal biosynthesi 51.4 1.1E+02 0.0024 28.3 8.7 48 78-134 86-133 (293)
113 PF01715 IPPT: IPP transferase 50.7 6.9 0.00015 34.9 0.8 10 202-211 55-64 (253)
114 cd02904 Macro_H2A_like Macro d 50.6 66 0.0014 27.6 6.8 32 162-196 130-163 (186)
115 PF01261 AP_endonuc_2: Xylose 50.5 54 0.0012 26.6 6.1 85 103-188 66-153 (213)
116 COG4064 MtrG Tetrahydromethano 50.1 4.4 9.5E-05 29.6 -0.4 35 177-211 12-56 (75)
117 TIGR00423 radical SAM domain p 49.4 1.4E+02 0.003 27.1 9.1 105 80-193 109-233 (309)
118 COG2730 BglC Endoglucanase [Ca 48.8 1.4E+02 0.0031 28.3 9.5 132 59-195 54-217 (407)
119 PF14488 DUF4434: Domain of un 48.3 40 0.00086 28.2 5.0 88 81-168 26-131 (166)
120 TIGR02814 pfaD_fam PfaD family 48.3 2.7E+02 0.0059 27.2 14.1 61 161-227 185-247 (444)
121 PRK05692 hydroxymethylglutaryl 48.0 2.1E+02 0.0046 25.9 11.3 41 115-155 86-129 (287)
122 PF10137 TIR-like: Predicted n 47.6 24 0.00053 28.3 3.5 29 92-128 2-31 (125)
123 PF02581 TMP-TENI: Thiamine mo 47.6 96 0.0021 25.7 7.3 58 159-228 115-172 (180)
124 PRK06096 molybdenum transport 47.1 29 0.00062 31.8 4.3 41 175-225 216-256 (284)
125 PRK08385 nicotinate-nucleotide 47.0 34 0.00074 31.2 4.7 41 178-226 212-252 (278)
126 PRK07896 nicotinate-nucleotide 46.7 31 0.00066 31.7 4.4 41 176-226 227-267 (289)
127 COG3588 Fructose-1,6-bisphosph 46.0 74 0.0016 29.6 6.6 95 107-211 157-262 (332)
128 cd06522 GH25_AtlA-like AtlA is 45.4 42 0.00091 28.3 4.8 47 75-124 9-58 (192)
129 cd08205 RuBisCO_IV_RLP Ribulos 44.9 2.1E+02 0.0044 27.1 9.8 98 3-112 197-303 (367)
130 PRK09249 coproporphyrinogen II 44.7 1.4E+02 0.003 28.7 8.8 108 81-196 154-278 (453)
131 PRK08208 coproporphyrinogen II 44.4 2.9E+02 0.0063 26.3 10.9 108 81-196 144-263 (430)
132 PRK05848 nicotinate-nucleotide 44.3 32 0.0007 31.2 4.1 40 177-226 211-250 (273)
133 COG0324 MiaA tRNA delta(2)-iso 43.8 12 0.00027 34.6 1.3 48 165-214 40-102 (308)
134 PF02571 CbiJ: Precorrin-6x re 43.4 42 0.0009 30.0 4.6 106 9-131 110-228 (249)
135 PF07745 Glyco_hydro_53: Glyco 42.6 53 0.0011 30.8 5.3 44 80-129 29-79 (332)
136 PF00150 Cellulase: Cellulase 42.2 1.2E+02 0.0025 26.1 7.2 24 108-131 62-85 (281)
137 cd01016 TroA Metal binding pro 41.9 1.6E+02 0.0034 26.3 8.2 48 145-192 147-209 (276)
138 cd06415 GH25_Cpl1-like Cpl-1 l 41.7 41 0.00089 28.4 4.2 47 74-124 8-54 (196)
139 COG0036 Rpe Pentose-5-phosphat 41.6 2.5E+02 0.0055 24.9 11.3 117 81-231 77-195 (220)
140 cd02067 B12-binding B12 bindin 41.3 57 0.0012 24.9 4.6 43 176-227 61-103 (119)
141 PF04210 MtrG: Tetrahydrometha 41.1 8.2 0.00018 28.1 -0.2 32 180-211 22-53 (70)
142 PLN02746 hydroxymethylglutaryl 41.0 3E+02 0.0066 25.9 10.2 42 114-155 127-171 (347)
143 cd01019 ZnuA Zinc binding prot 40.9 1.7E+02 0.0036 26.3 8.2 80 106-191 125-226 (286)
144 cd01017 AdcA Metal binding pro 40.8 1.6E+02 0.0035 26.2 8.1 46 144-191 158-218 (282)
145 cd01833 XynB_like SGNH_hydrola 40.7 47 0.001 26.1 4.2 79 124-211 2-86 (157)
146 TIGR01768 GGGP-family geranylg 40.4 38 0.00083 29.9 3.9 42 172-227 160-202 (223)
147 PHA02594 nadV nicotinamide pho 40.1 42 0.00091 33.0 4.4 40 183-223 305-352 (470)
148 cd02071 MM_CoA_mut_B12_BD meth 39.4 50 0.0011 25.7 4.1 23 204-227 81-103 (122)
149 PRK01026 tetrahydromethanopter 39.2 8.8 0.00019 28.5 -0.3 30 182-211 27-56 (77)
150 PF02836 Glyco_hydro_2_C: Glyc 39.0 70 0.0015 28.6 5.5 95 81-191 42-147 (298)
151 PF01297 TroA: Periplasmic sol 38.8 1.8E+02 0.0038 25.3 7.9 32 160-191 151-197 (256)
152 cd06523 GH25_PlyB-like PlyB is 38.3 2.3E+02 0.005 23.5 12.8 47 75-124 8-55 (177)
153 PRK12616 pyridoxal kinase; Rev 38.1 58 0.0013 28.8 4.8 42 140-192 58-99 (270)
154 TIGR00097 HMP-P_kinase phospho 38.1 60 0.0013 28.3 4.8 41 140-191 51-91 (254)
155 PF12327 FtsZ_C: FtsZ family, 37.9 27 0.00058 26.5 2.2 76 124-217 3-80 (95)
156 PRK08444 hypothetical protein; 37.8 3.5E+02 0.0075 25.4 10.7 166 16-193 81-274 (353)
157 PRK08999 hypothetical protein; 37.6 1.4E+02 0.0031 26.7 7.3 61 159-231 246-306 (312)
158 TIGR01149 mtrG N5-methyltetrah 37.4 9.4 0.0002 27.8 -0.4 30 182-211 24-53 (70)
159 PRK14729 miaA tRNA delta(2)-is 37.4 17 0.00036 33.6 1.1 10 202-211 91-100 (300)
160 PF02310 B12-binding: B12 bind 37.3 90 0.0019 23.4 5.2 21 202-223 79-99 (121)
161 PF02449 Glyco_hydro_42: Beta- 37.0 38 0.00083 31.5 3.5 46 80-129 15-68 (374)
162 cd07942 DRE_TIM_LeuA Mycobacte 36.9 2.8E+02 0.0061 25.2 9.1 54 114-167 81-147 (284)
163 PRK09856 fructoselysine 3-epim 36.7 2.8E+02 0.0061 24.0 12.8 18 110-127 92-109 (275)
164 PF06200 tify: tify domain; I 36.7 35 0.00076 21.7 2.2 23 202-225 5-33 (36)
165 PRK04531 acetylglutamate kinas 36.3 77 0.0017 30.3 5.5 75 81-165 80-170 (398)
166 KOG4131 Ngg1-interacting facto 36.3 1.2E+02 0.0025 27.6 6.2 93 11-119 154-255 (272)
167 cd01568 QPRTase_NadC Quinolina 36.1 57 0.0012 29.3 4.4 50 160-229 202-251 (269)
168 COG0351 ThiD Hydroxymethylpyri 36.0 60 0.0013 29.5 4.5 43 139-192 55-97 (263)
169 cd01018 ZntC Metal binding pro 35.8 1.2E+02 0.0027 26.7 6.4 81 107-191 117-215 (266)
170 TIGR00078 nadC nicotinate-nucl 35.0 1.1E+02 0.0023 27.6 5.9 46 160-227 199-244 (265)
171 PTZ00493 phosphomethylpyrimidi 34.9 70 0.0015 29.8 4.9 43 139-192 56-98 (321)
172 COG0614 FepB ABC-type Fe3+-hyd 34.7 1E+02 0.0022 27.0 5.8 40 62-101 221-260 (319)
173 PLN02446 (5-phosphoribosyl)-5- 34.6 54 0.0012 29.7 4.0 22 205-227 84-105 (262)
174 cd07948 DRE_TIM_HCS Saccharomy 34.5 2.7E+02 0.0058 24.9 8.4 106 81-191 28-152 (262)
175 PRK07360 FO synthase subunit 2 34.3 3.2E+02 0.007 25.5 9.3 58 79-136 164-233 (371)
176 cd01974 Nitrogenase_MoFe_beta 33.8 2.3E+02 0.0051 27.0 8.4 35 73-110 233-268 (435)
177 COG3370 Uncharacterized protei 33.2 21 0.00045 28.4 0.9 54 89-147 37-90 (113)
178 cd04727 pdxS PdxS is a subunit 32.4 1.7E+02 0.0037 26.9 6.8 59 40-110 48-107 (283)
179 PRK08649 inosine 5-monophospha 32.2 4.4E+02 0.0096 24.9 11.3 118 80-227 146-279 (368)
180 PRK06256 biotin synthase; Vali 32.2 3.9E+02 0.0084 24.2 10.7 100 81-193 155-268 (336)
181 PTZ00413 lipoate synthase; Pro 32.1 3.8E+02 0.0083 25.9 9.3 24 6-29 197-221 (398)
182 PF01884 PcrB: PcrB family; I 32.1 83 0.0018 28.0 4.7 22 203-225 181-203 (230)
183 PRK13587 1-(5-phosphoribosyl)- 31.8 1.5E+02 0.0034 25.9 6.4 115 81-226 91-214 (234)
184 cd01573 modD_like ModD; Quinol 31.5 82 0.0018 28.4 4.7 52 160-230 204-255 (272)
185 cd03174 DRE_TIM_metallolyase D 31.3 3.4E+02 0.0073 23.3 16.4 154 16-193 17-188 (265)
186 PF03129 HGTP_anticodon: Antic 31.2 41 0.00088 24.4 2.2 30 103-132 34-63 (94)
187 TIGR00542 hxl6Piso_put hexulos 31.1 2.8E+02 0.006 24.3 7.9 16 110-125 96-111 (279)
188 KOG3798 Predicted Zn-dependent 30.9 37 0.0008 31.2 2.2 28 163-191 264-291 (343)
189 COG2099 CobK Precorrin-6x redu 30.7 2.7E+02 0.0059 25.3 7.7 104 9-126 109-227 (257)
190 PRK08445 hypothetical protein; 30.6 4.5E+02 0.0097 24.5 12.1 134 79-231 145-299 (348)
191 PF01301 Glyco_hydro_35: Glyco 30.5 88 0.0019 28.8 4.8 50 81-130 30-85 (319)
192 PRK02615 thiamine-phosphate py 30.2 1.8E+02 0.0039 27.4 6.8 59 159-229 260-318 (347)
193 PRK10799 metal-binding protein 30.2 33 0.00072 30.3 1.8 54 82-151 180-233 (247)
194 PRK07379 coproporphyrinogen II 30.1 4.8E+02 0.01 24.6 11.0 108 81-196 118-243 (400)
195 PRK13585 1-(5-phosphoribosyl)- 30.0 74 0.0016 27.4 4.0 22 204-226 193-215 (241)
196 TIGR03471 HpnJ hopanoid biosyn 29.5 1.7E+02 0.0038 28.0 6.8 55 81-135 290-355 (472)
197 cd07945 DRE_TIM_CMS Leptospira 29.5 4.2E+02 0.0092 23.8 9.6 158 12-192 13-188 (280)
198 TIGR00538 hemN oxygen-independ 29.4 5.1E+02 0.011 24.8 12.2 106 81-195 154-277 (455)
199 PRK09997 hydroxypyruvate isome 29.2 2.9E+02 0.0064 23.9 7.7 110 77-187 42-166 (258)
200 PRK12412 pyridoxal kinase; Rev 29.1 1E+02 0.0022 27.2 4.8 41 140-191 56-96 (268)
201 PRK05377 fructose-1,6-bisphosp 28.7 84 0.0018 29.0 4.1 50 110-162 160-212 (296)
202 cd00861 ProRS_anticodon_short 28.7 94 0.002 22.2 3.8 42 81-132 24-65 (94)
203 COG1217 TypA Predicted membran 28.7 69 0.0015 32.0 3.8 73 73-155 79-151 (603)
204 COG0561 Cof Predicted hydrolas 28.6 3.2E+02 0.0068 23.6 7.8 84 89-192 10-98 (264)
205 cd02871 GH18_chitinase_D-like 28.5 3.4E+02 0.0074 24.6 8.2 82 106-192 58-141 (312)
206 COG1027 AspA Aspartate ammonia 28.5 51 0.0011 32.0 2.8 25 169-193 231-255 (471)
207 PF12083 DUF3560: Domain of un 28.4 19 0.00042 29.1 0.0 10 92-101 45-55 (126)
208 PRK11320 prpB 2-methylisocitra 27.6 2.7E+02 0.0059 25.5 7.4 61 37-101 179-240 (292)
209 PRK09856 fructoselysine 3-epim 27.6 1.9E+02 0.0042 25.0 6.3 14 82-95 97-110 (275)
210 PF12682 Flavodoxin_4: Flavodo 27.5 12 0.00027 30.8 -1.3 65 107-179 13-91 (156)
211 PLN02746 hydroxymethylglutaryl 27.3 4.5E+02 0.0097 24.7 8.9 101 81-193 127-239 (347)
212 TIGR00343 pyridoxal 5'-phospha 27.3 5E+02 0.011 24.0 9.5 77 40-134 50-126 (287)
213 cd07939 DRE_TIM_NifV Streptomy 27.2 4.3E+02 0.0093 23.2 9.4 72 114-191 75-150 (259)
214 PRK03512 thiamine-phosphate py 27.1 2.6E+02 0.0056 24.1 6.9 61 159-230 122-183 (211)
215 TIGR00735 hisF imidazoleglycer 27.1 80 0.0017 27.8 3.7 20 205-225 75-95 (254)
216 PRK10850 PTS system phosphohis 27.1 65 0.0014 23.9 2.7 32 203-234 31-62 (85)
217 TIGR02317 prpB methylisocitrat 26.8 2.2E+02 0.0047 26.1 6.5 61 37-101 174-235 (285)
218 PF00381 PTS-HPr: PTS HPr comp 26.8 35 0.00075 24.9 1.1 33 202-234 30-62 (84)
219 cd00841 MPP_YfcE Escherichia c 26.6 50 0.0011 26.1 2.1 37 81-132 95-131 (155)
220 PRK09936 hypothetical protein; 26.6 1.5E+02 0.0033 27.5 5.4 136 76-221 39-193 (296)
221 PRK13210 putative L-xylulose 5 26.6 3.1E+02 0.0067 23.8 7.4 16 112-127 98-113 (284)
222 PRK07259 dihydroorotate dehydr 26.0 4.8E+02 0.01 23.3 10.6 28 204-235 234-262 (301)
223 COG2247 LytB Putative cell wal 25.9 86 0.0019 29.5 3.8 48 81-133 93-144 (337)
224 cd00598 GH18_chitinase-like Th 25.9 3.7E+02 0.008 22.0 7.9 83 107-193 48-137 (210)
225 COG0327 Uncharacterized conser 25.5 45 0.00097 29.8 1.8 23 75-97 194-219 (250)
226 COG0502 BioB Biotin synthase a 25.5 1.2E+02 0.0025 28.7 4.6 56 80-135 146-210 (335)
227 cd00218 GlcAT-I Beta1,3-glucur 25.4 2.8E+02 0.0061 24.6 6.7 105 40-150 4-118 (223)
228 COG2249 MdaB Putative NADPH-qu 25.3 1.2E+02 0.0026 26.0 4.3 15 158-173 68-82 (189)
229 PRK10897 phosphohistidinoprote 25.1 76 0.0016 23.9 2.7 32 203-234 32-64 (90)
230 PRK10343 RNA-binding protein Y 25.0 1E+02 0.0023 23.7 3.5 80 112-211 8-87 (97)
231 COG2049 DUR1 Allophanate hydro 25.0 79 0.0017 28.1 3.2 60 156-223 45-105 (223)
232 PRK06543 nicotinate-nucleotide 25.0 77 0.0017 29.0 3.3 36 177-225 222-257 (281)
233 PRK00748 1-(5-phosphoribosyl)- 24.9 4.3E+02 0.0093 22.4 8.8 115 81-226 89-212 (233)
234 PLN02840 tRNA dimethylallyltra 24.8 2.4E+02 0.0052 27.4 6.7 47 123-177 22-69 (421)
235 PF02044 Bombesin: Bombesin-li 24.8 19 0.00042 18.2 -0.4 7 167-173 2-8 (14)
236 TIGR00238 KamA family protein. 24.4 1.4E+02 0.003 27.6 4.9 108 76-193 209-317 (331)
237 PRK05742 nicotinate-nucleotide 24.4 2.1E+02 0.0045 26.1 5.9 38 176-226 217-254 (277)
238 PF00977 His_biosynth: Histidi 24.3 1.1E+02 0.0025 26.5 4.1 123 75-227 82-214 (229)
239 cd00949 FBP_aldolase_I_bact Fr 24.2 84 0.0018 29.0 3.3 47 114-163 161-210 (292)
240 TIGR03572 WbuZ glycosyl amidat 23.7 1.2E+02 0.0026 26.0 4.2 47 82-131 160-206 (232)
241 PRK04143 hypothetical protein; 23.6 3.2E+02 0.0069 24.7 7.0 53 141-196 182-236 (264)
242 PRK01033 imidazole glycerol ph 23.5 1.1E+02 0.0024 27.0 4.0 13 118-130 40-52 (258)
243 PRK06512 thiamine-phosphate py 23.3 1.9E+02 0.0041 25.2 5.3 59 159-230 131-189 (221)
244 COG4843 Uncharacterized protei 23.3 80 0.0017 26.3 2.7 13 158-170 151-163 (179)
245 TIGR00253 RNA_bind_YhbY putati 23.3 1.3E+02 0.0028 23.1 3.7 81 112-213 6-86 (95)
246 PF02873 MurB_C: UDP-N-acetyle 23.3 88 0.0019 24.3 2.9 42 158-208 63-104 (105)
247 cd04731 HisF The cyclase subun 23.3 1.5E+02 0.0033 25.6 4.7 19 205-224 72-91 (243)
248 TIGR01520 FruBisAldo_II_A fruc 23.3 1.4E+02 0.003 28.4 4.6 134 88-227 135-281 (357)
249 cd04740 DHOD_1B_like Dihydroor 23.2 4.4E+02 0.0095 23.4 7.9 27 170-196 258-284 (296)
250 PRK06559 nicotinate-nucleotide 23.2 91 0.002 28.7 3.4 43 177-232 226-273 (290)
251 PF04273 DUF442: Putative phos 23.2 3.5E+02 0.0076 21.0 6.3 65 114-191 20-84 (110)
252 PRK08072 nicotinate-nucleotide 23.1 3E+02 0.0065 25.0 6.7 38 177-227 217-254 (277)
253 TIGR03217 4OH_2_O_val_ald 4-hy 23.1 6.1E+02 0.013 23.5 15.7 153 11-193 17-185 (333)
254 PF02679 ComA: (2R)-phospho-3- 23.1 1.1E+02 0.0024 27.5 3.8 69 81-153 90-158 (244)
255 PHA00432 internal virion prote 22.8 44 0.00095 27.5 1.1 30 167-196 58-89 (137)
256 PRK08599 coproporphyrinogen II 22.8 6.1E+02 0.013 23.4 11.2 107 81-196 103-228 (377)
257 PRK12290 thiE thiamine-phospha 22.7 3.4E+02 0.0073 26.6 7.3 69 158-230 319-389 (437)
258 PLN02748 tRNA dimethylallyltra 22.6 37 0.00081 33.3 0.8 10 202-211 110-119 (468)
259 PLN02898 HMP-P kinase/thiamin- 22.6 2.4E+02 0.0052 27.4 6.4 59 158-228 409-467 (502)
260 PRK13782 phosphocarrier protei 22.6 77 0.0017 23.1 2.3 31 203-233 31-61 (82)
261 PRK14484 phosphotransferase ma 22.4 2.1E+02 0.0046 22.9 5.0 63 89-165 2-64 (124)
262 PRK00230 orotidine 5'-phosphat 22.3 4.7E+02 0.01 22.6 7.7 76 37-118 148-227 (230)
263 cd00516 PRTase_typeII Phosphor 22.3 1.5E+02 0.0033 26.2 4.6 47 177-226 214-260 (281)
264 cd07381 MPP_CapA CapA and rela 22.2 3.9E+02 0.0085 22.8 7.1 69 58-132 38-117 (239)
265 COG4026 Uncharacterized protei 22.1 1.7E+02 0.0037 26.3 4.7 105 18-130 17-129 (290)
266 cd02068 radical_SAM_B12_BD B12 22.0 1.6E+02 0.0035 22.6 4.2 38 175-222 48-85 (127)
267 PF02682 AHS1: Allophanate hyd 22.0 72 0.0015 27.5 2.4 52 157-219 48-103 (202)
268 COG2069 CdhD CO dehydrogenase/ 22.0 1E+02 0.0022 29.0 3.4 46 169-222 171-216 (403)
269 TIGR01003 PTS_HPr_family Phosp 21.9 79 0.0017 23.0 2.3 32 203-234 31-62 (82)
270 PRK08662 nicotinate phosphorib 21.7 1.4E+02 0.0029 28.1 4.3 42 179-225 240-281 (343)
271 COG0041 PurE Phosphoribosylcar 21.7 2.7E+02 0.0058 23.6 5.5 44 80-128 21-64 (162)
272 TIGR03581 EF_0839 conserved hy 21.6 5.9E+02 0.013 22.8 8.5 92 78-190 138-235 (236)
273 PRK14072 6-phosphofructokinase 21.6 1.4E+02 0.0031 28.7 4.6 45 84-131 67-113 (416)
274 PRK13803 bifunctional phosphor 21.5 97 0.0021 31.3 3.5 37 171-224 142-178 (610)
275 COG3454 Metal-dependent hydrol 21.5 96 0.0021 29.4 3.2 54 38-93 245-298 (377)
276 PRK06106 nicotinate-nucleotide 21.4 96 0.0021 28.4 3.2 43 177-232 223-270 (281)
277 PRK13813 orotidine 5'-phosphat 21.2 4.9E+02 0.011 21.8 7.4 33 81-117 178-211 (215)
278 PLN03155 cytochrome c oxidase 21.1 86 0.0019 22.3 2.1 22 8-29 31-54 (63)
279 PLN02783 diacylglycerol O-acyl 21.0 4.1E+02 0.0089 24.4 7.3 22 177-198 278-299 (315)
280 cd07945 DRE_TIM_CMS Leptospira 20.9 5.5E+02 0.012 23.1 8.0 96 114-223 80-182 (280)
281 PF00994 MoCF_biosynth: Probab 20.8 1.9E+02 0.0041 22.8 4.5 48 77-131 19-66 (144)
282 PF01661 Macro: Macro domain; 20.8 1.6E+02 0.0034 21.8 3.9 44 139-185 73-117 (118)
283 PF14871 GHL6: Hypothetical gl 20.7 2.3E+02 0.0049 22.8 4.9 45 81-128 6-64 (132)
284 PRK05927 hypothetical protein; 20.7 7E+02 0.015 23.3 11.3 108 77-193 143-272 (350)
285 PRK09140 2-dehydro-3-deoxy-6-p 20.7 5.4E+02 0.012 22.0 14.9 156 15-230 19-176 (206)
286 PRK06978 nicotinate-nucleotide 20.6 1.1E+02 0.0023 28.3 3.3 36 177-225 234-269 (294)
287 PLN02389 biotin synthase 20.5 7.3E+02 0.016 23.5 16.9 105 80-193 180-296 (379)
288 PRK10878 hypothetical protein; 20.5 96 0.0021 22.6 2.4 25 168-193 40-64 (72)
289 TIGR00161 conserved hypothetic 20.4 5.9E+02 0.013 22.3 8.2 13 82-94 101-113 (238)
290 PRK14126 cell division protein 20.4 58 0.0013 24.3 1.3 34 87-121 14-47 (85)
291 PRK07094 biotin synthase; Prov 20.3 6.3E+02 0.014 22.6 10.8 101 81-193 132-247 (323)
292 KOG0831 Acyl-CoA:diacylglycero 20.3 1.8E+02 0.0038 27.5 4.6 92 114-211 210-325 (334)
293 PF07071 DUF1341: Protein of u 20.3 1.6E+02 0.0035 26.0 4.1 35 81-123 141-179 (218)
294 cd07941 DRE_TIM_LeuA3 Desulfob 20.3 4.6E+02 0.0099 23.3 7.3 109 81-191 26-162 (273)
295 PF00107 ADH_zinc_N: Zinc-bind 20.2 1.9E+02 0.0042 21.6 4.3 64 77-168 3-66 (130)
296 PRK09058 coproporphyrinogen II 20.1 7.8E+02 0.017 23.6 10.6 110 81-196 166-292 (449)
297 PRK06294 coproporphyrinogen II 20.1 7.1E+02 0.015 23.1 14.5 110 81-196 106-231 (370)
298 TIGR00370 conserved hypothetic 20.1 1.1E+02 0.0024 26.5 3.2 51 156-218 40-93 (202)
No 1
>PLN02561 triosephosphate isomerase
Probab=100.00 E-value=3.1e-84 Score=574.78 Aligned_cols=223 Identities=83% Similarity=1.247 Sum_probs=209.0
Q ss_pred CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccC
Q 026522 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS 80 (237)
Q Consensus 1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiS 80 (237)
|.|||||+||||||++.+++.+|++.+.....+...++++++||||++|..+.+.++++|.+||||||+.++||||||||
T Consensus 1 ~~rk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS 80 (253)
T PLN02561 1 MARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDFQVAAQNCWVKKGGAFTGEIS 80 (253)
T ss_pred CCCccEEEEECCcCCCHHHHHHHHHHHHhcccCccCCeeEEEeCCHHHHHHHHHHhccCCeEEeccccCcCCCCccCcCC
Confidence 78999999999999999999999999865312223568999999999999998876656999999999999999999999
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~ 160 (237)
|+||+|+||+||||||||||++|+|||++|++|+++|+++||+|||||||++++|++|+|.+++.+|++.+++.++..++
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~~ 160 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWAN 160 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876688
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
++|||||+||||||++|||++++++|++||+++.++|+..+++++|||||| ||||+|+.+++.
T Consensus 161 iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGG-SV~~~N~~~l~~ 223 (253)
T PLN02561 161 VVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGG-SVTGANCKELAA 223 (253)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeC-CcCHHHHHHHhc
Confidence 999999999999999999999999999999999999998889999999999 999999999853
No 2
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-84 Score=551.94 Aligned_cols=221 Identities=62% Similarity=0.997 Sum_probs=213.6
Q ss_pred CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccC
Q 026522 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS 80 (237)
Q Consensus 1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiS 80 (237)
|.||++|+||||||++.+...++++.|+....+ .++|++|+||++||..+.+.+++.|.+|||||+....||||||+|
T Consensus 1 MarkffvgGNwKmngs~~s~~eii~~ln~a~~~--~~vevvi~pP~~Yl~~ak~~l~~~i~v~aQn~~~~k~GafTGEiS 78 (247)
T KOG1643|consen 1 MARKFFVGGNWKMNGSKQSIKEIIKTLNAAKLP--ANVEVVIAPPAPYLDYAKSKLKPDIGVAAQNCYKVKSGAFTGEIS 78 (247)
T ss_pred CCcceEecccccccCcHHHHHHHHHHhhhccCC--CCCcEEEeCChhHHHHHHHhCCccceeecceeeeccCccccCccC
Confidence 889999999999999999999999999876544 579999999999999999999889999999999999999999999
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~ 160 (237)
|+||+|+|++|||+||||||++|+|+|++|.+|++.||+.||.+|.||||++||||+|+|.+|+.+||.++.+.+.+|++
T Consensus 79 ~~mlkd~G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv~~Ql~aiad~v~~w~n 158 (247)
T KOG1643|consen 79 AEMLKDLGAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVVFRQLKAIADKVKDWSN 158 (247)
T ss_pred HHHHHhCCCCEEEecchhhhhhhCCchHHHHHHHHHHHHcCCeEEEEecccHHhhhcCchHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
++||||||||||||++|||+|+||+|..||+|+.++.+..++..+||+||| |||..|+++++.
T Consensus 159 iviAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGG-SV~g~N~~el~~ 221 (247)
T KOG1643|consen 159 IVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGG-SVNGGNCKELAK 221 (247)
T ss_pred eEEEeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEecc-ccccccHHHhcc
Confidence 999999999999999999999999999999999999999999999999999 999999999753
No 3
>PRK14566 triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.7e-83 Score=571.32 Aligned_cols=220 Identities=40% Similarity=0.614 Sum_probs=204.6
Q ss_pred CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CC-------cEEeeeccccccCc
Q 026522 2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PG-------FHVAAQNCWVKKGG 73 (237)
Q Consensus 2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~-------i~igAQnv~~~~~G 73 (237)
.|||+|+||||||++.+++.+|++.+.....+ +++++++||||++|..+.+.+. ++ +.+|||||++.++|
T Consensus 3 ~rk~~i~gNWKmn~~~~~~~~~~~~l~~~~~~--~~v~v~v~Pp~~~L~~~~~~~~~~~~~~~g~~i~v~AQnv~~~~~G 80 (260)
T PRK14566 3 LRRPMVAGNWKMNGSAALAQELFKKFAGKLQN--DSAEVVLCPPSIYLESVRQLLEANKEALDGSLVRMGAQNVSQHDFG 80 (260)
T ss_pred CCCeEEEEECCcCcCHHHHHHHHHHHHhhcCC--CCeeEEEECCHHHHHHHHHHhccCcccccCceEEEEecccccccCC
Confidence 47889999999999999999999998664322 4699999999999999988765 44 99999999999999
Q ss_pred CcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 026522 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD 153 (237)
Q Consensus 74 A~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~ 153 (237)
||||||||+||+|+||+||||||||||++|+|+|++|++|+++|+++||+||+|||||+++|++|+|.+++.+||+..|+
T Consensus 81 a~TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~ 160 (260)
T PRK14566 81 AYTGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIE 160 (260)
T ss_pred CccCccCHHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC--CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522 154 RVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 154 ~i~--~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~ 225 (237)
++. ++++++|||||+||||||++|||++||++|++||++|.++ +.++++++|||||| ||||+|+.+|+..
T Consensus 161 ~~~~~~~~~ivIAYEPvWAIGTG~~At~e~a~~v~~~IR~~l~~~-~~~~a~~~rIlYGG-SV~~~N~~~l~~~ 232 (260)
T PRK14566 161 KNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEV-SPFIGENIRILYGG-SVTPSNAADLFAQ 232 (260)
T ss_pred ccchhhcCcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHhc-CccccccceEEecC-CCCHhHHHHHhcC
Confidence 542 3789999999999999999999999999999999999988 77788899999999 9999999998653
No 4
>PRK14567 triosephosphate isomerase; Provisional
Probab=100.00 E-value=2.1e-83 Score=569.09 Aligned_cols=220 Identities=35% Similarity=0.564 Sum_probs=204.9
Q ss_pred cceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHH
Q 026522 4 KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEM 83 (237)
Q Consensus 4 ~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~m 83 (237)
||||+||||||++.+++.+|++.+..... ...++++++||||++|..+.+.+.+++.+||||||+.+.|||||||||+|
T Consensus 2 ~~~v~gNWKMn~~~~~~~~~~~~~~~~~~-~~~~~~v~vaP~~~~L~~~~~~~~~~i~vgAQnv~~~~~Ga~TGEvS~~m 80 (253)
T PRK14567 2 QKLIMGNWKMNGNSTSIKELCSGISQVQY-DTSRVAIAVFPSSVYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARM 80 (253)
T ss_pred CeEEEEECCcCCCHHHHHHHHHHHHhhcc-CCCCcEEEEeCCHHHHHHHHHHhcCCCEEEccccccccCCCccCcCCHHH
Confidence 67899999999999999999999866432 22468999999999999998766567999999999999999999999999
Q ss_pred HHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCCCe
Q 026522 84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNI 161 (237)
Q Consensus 84 Lkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~~~i 161 (237)
|||+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+||+.+++.++ +++++
T Consensus 81 Lkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~~~~~i 160 (253)
T PRK14567 81 LEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAKV 160 (253)
T ss_pred HHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHHhCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 37899
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 162 iIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
+|||||+||||||++|||++|+++|++||+++.+ ++..+++++|||||| ||||+|+.+++.++
T Consensus 161 vIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~-~~~~~a~~v~IlYGG-SV~~~N~~~l~~~~ 223 (253)
T PRK14567 161 VIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAK-VDERLAKNIKIVYGG-SLKAENAKDILSLP 223 (253)
T ss_pred EEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHh-hcccccccceEEEcC-cCCHHHHHHHHcCC
Confidence 9999999999999999999999999999999988 677788899999999 99999999987654
No 5
>PTZ00333 triosephosphate isomerase; Provisional
Probab=100.00 E-value=4.6e-83 Score=568.40 Aligned_cols=222 Identities=55% Similarity=0.901 Sum_probs=208.8
Q ss_pred CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCccccc
Q 026522 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEI 79 (237)
Q Consensus 1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGei 79 (237)
|||+|+|++|||||++.+++.+|++.+..... ...++++++||||++|..+.+.+. +++.+||||||+.+.|||||||
T Consensus 2 ~~~k~~i~~NwKmn~~~~~~~~~~~~~~~~~~-~~~~v~v~i~P~~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGev 80 (255)
T PTZ00333 2 MKRKPFVGGNWKCNGTKASIKELIDSFNKLKF-DPNNVDVVVAPPSLHIPLVQEKLKNKNFKISSQNVSLTGSGAFTGEI 80 (255)
T ss_pred CCCCeEEEEEcccccCHHHHHHHHHHHHhhcc-ccCCeeEEEECCHHHHHHHHHHhcCCCeeEEccccccccCCCccCcC
Confidence 47889999999999999999999999876432 224689999999999999998877 7899999999999999999999
Q ss_pred CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCC--
Q 026522 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS-- 157 (237)
Q Consensus 80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~-- 157 (237)
||+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.++|.+|++.+++.++.
T Consensus 81 S~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~ 160 (255)
T PTZ00333 81 SAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEA 160 (255)
T ss_pred CHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988853
Q ss_pred CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 158 ~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
..+++|||||+||||||++|+||+|+++|++||+.+.++++..+++++|||||| ||+|+|+.+++.
T Consensus 161 ~~~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGG-SV~~~N~~~l~~ 226 (255)
T PTZ00333 161 WDNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGG-SVNEKNCKELIK 226 (255)
T ss_pred cceEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcC-CCCHHHHHHHhc
Confidence 689999999999999999999999999999999999999988888999999999 999999999854
No 6
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=100.00 E-value=7.2e-83 Score=565.82 Aligned_cols=219 Identities=50% Similarity=0.732 Sum_probs=206.2
Q ss_pred CcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCH
Q 026522 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISA 81 (237)
Q Consensus 3 r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa 81 (237)
|||+|++|||||++..++.+|++.+.+... ...++++++||||++|..+++.++ +++.+||||||+.+.|||||||||
T Consensus 1 ~~~~v~~NwKmn~~~~~~~~~~~~l~~~~~-~~~~~~v~v~Pp~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~ 79 (250)
T PRK00042 1 RKPIIAGNWKMNKTLAEAKALVEELKAALP-DADGVEVAVAPPFTALASVKEALKGSNIKLGAQNVHPEDSGAFTGEISA 79 (250)
T ss_pred CCcEEEEEcccCcCHHHHHHHHHHHHhhcc-ccCCeeEEEECCHHHHHHHHHHhcCCCeEEEecccccccCCCccCccCH
Confidence 578999999999999999999999876432 224689999999999999998777 789999999999999999999999
Q ss_pred HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCC
Q 026522 82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWS 159 (237)
Q Consensus 82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~~ 159 (237)
+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.++|.+||+.+|++++ .++
T Consensus 80 ~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~~ 159 (250)
T PRK00042 80 EMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFA 159 (250)
T ss_pred HHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875 378
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
+++|||||+||||||++|||++++++|++||++++++++ ++++++|||||| ||||+|+.+++.
T Consensus 160 ~~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~-~~~~~~~IlYGG-SV~~~N~~~l~~ 222 (250)
T PRK00042 160 NLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYG-EVAEKVRILYGG-SVKPDNAAELMA 222 (250)
T ss_pred CEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcc-cccCCceEEEcC-CCCHHHHHHHhc
Confidence 999999999999999999999999999999999999998 788999999999 999999999764
No 7
>PRK15492 triosephosphate isomerase; Provisional
Probab=100.00 E-value=9e-83 Score=567.78 Aligned_cols=222 Identities=29% Similarity=0.444 Sum_probs=205.3
Q ss_pred CCcceEEEecccCCCHHHHHHHHHHHhcCC--CCCCCCceEEEcCccccHHHHHHhc----C-CCcEEeeeccccccCcC
Q 026522 2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQ--VPSSDVVEVVVSPPFVFLGLVKSSL----R-PGFHVAAQNCWVKKGGA 74 (237)
Q Consensus 2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~--~~~~~~~~v~i~Pp~~~L~~~~~~~----~-~~i~igAQnv~~~~~GA 74 (237)
||||||+||||||++..++.+|++.+.+.. .+...++++++||||++|..+.+.+ . +++.+|||||++.+.||
T Consensus 1 Mrk~~i~~NWKmn~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~P~~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~Ga 80 (260)
T PRK15492 1 MKKIYFGTNLKMYKGIADATDFLAKLSELADDIPADKDIELFVIPSFTAIQDAIAATLAIPHDHPIIIGAQNMNPNDNGQ 80 (260)
T ss_pred CCCCEEEEECCcCCCHHHHHHHHHHHHhhhhhcccCCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCCC
Confidence 499999999999999999999999986531 1122468999999999999998865 2 57999999999999999
Q ss_pred cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhc
Q 026522 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR 154 (237)
Q Consensus 75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~ 154 (237)
|||||||+||||+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|+.|++.+++.+||+.+|+.
T Consensus 81 ~TGevSa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~ 160 (260)
T PRK15492 81 FTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHG 160 (260)
T ss_pred ccCcCCHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC--CCCCeEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522 155 VS--SWSNIVLAYEPVWAIGT-GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 155 i~--~~~~iiIAYEPvWAIGt-G~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~ 225 (237)
++ .+++++|||||+||||| |++||||+++++|++||++|.+.++.. ++++|||||| ||||+|+.+|+..
T Consensus 161 ~~~~~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~-~~~irILYGG-SV~~~N~~~l~~~ 232 (260)
T PRK15492 161 INPDQLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDA-GDDIPVFYGG-SVNAENANELFGQ 232 (260)
T ss_pred CCHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEcC-ccCHHHHHHHhcC
Confidence 85 37899999999999998 999999999999999999999999866 7889999999 9999999998643
No 8
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=100.00 E-value=1.9e-83 Score=567.89 Aligned_cols=219 Identities=46% Similarity=0.721 Sum_probs=202.6
Q ss_pred ceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCHHH
Q 026522 5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEM 83 (237)
Q Consensus 5 ~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa~m 83 (237)
|||++|||||++.+++.+|++.+.+...+ ..+++++|||||++|..+++.++ +++.+||||||+.+.|||||||||+|
T Consensus 1 kii~~NwKmn~~~~~~~~~~~~l~~~~~~-~~~v~v~i~Pp~~~L~~~~~~~~~~~i~igAQnv~~~~~Ga~TGevS~~m 79 (244)
T PF00121_consen 1 KIIIGNWKMNGTGEEALEFLKELLNAKLP-NKDVEVVIAPPFTYLSSVSKILKGSNIKIGAQNVSPEDSGAFTGEVSAEM 79 (244)
T ss_dssp SEEEEEETBSGSHHHHHHHHHHHHHHHCH-TTTEEEEEEESGGGHHHHHHHHTTTTSEEEESS-BSSSSBS-TTHHBHHH
T ss_pred CEEEEehhhCcCHHHHHHHHHHHHhcccc-cCCeeEEEEecchhHHHHHhhccCCeEEEecccccchhhcccHHHhHHHH
Confidence 68999999999999999999997654322 15899999999999999999887 89999999999999999999999999
Q ss_pred HHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CCCCe
Q 026522 84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNI 161 (237)
Q Consensus 84 Lkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~~~i 161 (237)
|+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.++|.+||+.+|++++ +++++
T Consensus 80 L~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~~~~ 159 (244)
T PF00121_consen 80 LKDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKEELKNI 159 (244)
T ss_dssp HHHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGGGTCE
T ss_pred HHHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhccccccccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 36899
Q ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522 162 VLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 162 iIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~ 225 (237)
+|||||+||||||++|||++++++|++||++|+++|+.++++++|||||| ||||+|+.+++..
T Consensus 160 iIAYEPvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGG-SV~~~N~~~l~~~ 222 (244)
T PF00121_consen 160 IIAYEPVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGG-SVNPENAAELLSQ 222 (244)
T ss_dssp EEEEEEGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEES-SESTTTHHHHHTS
T ss_pred EEEEcccccccCCCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECC-cCCcccHHHHhcC
Confidence 99999999999999999999999999999999999988889999999999 9999999998743
No 9
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=100.00 E-value=1.4e-82 Score=561.72 Aligned_cols=219 Identities=49% Similarity=0.698 Sum_probs=206.9
Q ss_pred ceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCHHH
Q 026522 5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEM 83 (237)
Q Consensus 5 ~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa~m 83 (237)
|+|++|||||++.+++.+|++.+..... ...+++++|||||++|..+.+.++ +++.+||||||+.+.|||||||||+|
T Consensus 1 ~~i~~NwKmn~~~~~~~~~~~~l~~~~~-~~~~v~v~i~Pp~~~L~~~~~~~~~~~i~vgAQnv~~~~~Ga~TGevS~~m 79 (242)
T cd00311 1 PLVAGNWKMNGTLAEALELAKALNAVLK-DESGVEVVVAPPFTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEM 79 (242)
T ss_pred CEEEEECCcccCHHHHHHHHHHHHhhcc-ccCCceEEEECCHHHHHHHHHHccCCCeEEEecccccccCCCCcCcCCHHH
Confidence 5899999999999999999999876432 235799999999999999998876 68999999999999999999999999
Q ss_pred HHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEE
Q 026522 84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVL 163 (237)
Q Consensus 84 Lkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiI 163 (237)
|+|+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|++|+|.+++.+|++..++.++.+++++|
T Consensus 80 L~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~~~iI 159 (242)
T cd00311 80 LKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVI 159 (242)
T ss_pred HHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhcCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988866889999
Q ss_pred EEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 164 AYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 164 AYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
||||+||||||++|||++++++|++||+++++.++. +++++|||||| ||||+|+.+++.++
T Consensus 160 AYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~-~~~~~~IlYGG-SV~~~N~~~l~~~~ 220 (242)
T cd00311 160 AYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGE-VAEKVRILYGG-SVNPENAAELLAQP 220 (242)
T ss_pred EECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhccc-ccCceeEEECC-CCCHHHHHHHhcCC
Confidence 999999999999999999999999999999999987 88999999999 99999999988764
No 10
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-82 Score=560.14 Aligned_cols=220 Identities=47% Similarity=0.668 Sum_probs=205.3
Q ss_pred CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522 2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS 80 (237)
Q Consensus 2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS 80 (237)
||+++|+||||||++..++.+|++.+.....+...+++++|||||++|..+.+.+. .++.+||||||+.++||||||||
T Consensus 1 ~~~~~v~gNwKmn~t~~~~~~~~~~~~~~~~~~~~~~~v~I~pp~~~L~~~~~~~~~g~i~~gAQn~~~~~~GA~TGeiS 80 (251)
T COG0149 1 MRKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIKVGAQNVDPEDSGAFTGEIS 80 (251)
T ss_pred CCCcEEEEEcccCcChHHHHHHHHHHhhcccccccceeEEEeCCHHHHHHHHHHhccCCceEEeccCCcccCCCccCcCC
Confidence 48889999999999999999999998765433223344999999999999999887 48999999999999999999999
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~ 160 (237)
++||+|+||+||||||||||.+|+|+|++|++|+++|+++||+||+||||++++||+|+|.++|.+|++..+..++..++
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~ 160 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEAN 160 (251)
T ss_pred HHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998865578
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
++|||||+||||||+++|+++++++|++||.++.+++|.+ +.+|||||| ||||+|+.+++.
T Consensus 161 ~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~--~~v~IlYGG-SV~~~N~~e~~~ 221 (251)
T COG0149 161 IVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAE--EKVRILYGG-SVKPGNAAELAA 221 (251)
T ss_pred eEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCC--CCeEEEEeC-CcChhHHHHHhc
Confidence 9999999999999999999999999999999999999866 899999999 999999999864
No 11
>PLN02429 triosephosphate isomerase
Probab=100.00 E-value=4.9e-82 Score=573.63 Aligned_cols=221 Identities=61% Similarity=0.979 Sum_probs=208.4
Q ss_pred CCCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccC
Q 026522 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEIS 80 (237)
Q Consensus 1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiS 80 (237)
|.|||||+||||||++.+++.+|++.+.....+ .+++++|||||++|..+.+.+.+++.+|||||++.+.||||||||
T Consensus 62 ~~~k~~i~gNWKmn~t~~~~~~~~~~l~~~~~~--~~v~v~iaPp~~~L~~~~~~~~~~i~vgAQnv~~~~~GayTGEVS 139 (315)
T PLN02429 62 GSGKFFVGGNWKCNGTKDSIAKLISDLNSATLE--ADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEIS 139 (315)
T ss_pred ccCCEEEEEECCcCCCHHHHHHHHHHHHhcccC--CCceEEEeCCHHHHHHHHHHhcCCCeEEecccCCCCCCCccCcCC
Confidence 347899999999999999999999998663222 369999999999999998876667999999999999999999999
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~ 160 (237)
|+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|+|.+++.+||+.+++.++++++
T Consensus 140 a~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~~ 219 (315)
T PLN02429 140 VEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDN 219 (315)
T ss_pred HHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877889
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
++|||||+||||||++|||++++++|++||++|+++++.++++++|||||| ||||+|+.+++.
T Consensus 220 ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGG-SV~~~N~~el~~ 282 (315)
T PLN02429 220 IVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGG-SVNGGNSAELAK 282 (315)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcC-ccCHHHHHHHhc
Confidence 999999999999999999999999999999999999998889999999999 999999999873
No 12
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=100.00 E-value=2.9e-79 Score=565.76 Aligned_cols=223 Identities=34% Similarity=0.491 Sum_probs=205.4
Q ss_pred CCCcceEEEecccCCCHHHHHHHHHHHhcCCC--CCCCCceEEEcCccccHHHHHHhcC-----CCcEEeeeccccccCc
Q 026522 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQV--PSSDVVEVVVSPPFVFLGLVKSSLR-----PGFHVAAQNCWVKKGG 73 (237)
Q Consensus 1 m~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~--~~~~~~~v~i~Pp~~~L~~~~~~~~-----~~i~igAQnv~~~~~G 73 (237)
|.|+|||+||||||++.+++.+|++.|..... +...++++++||||++|..+.+.+. +++.+||||||+.+.|
T Consensus 1 ~~r~~~v~gNWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~v~i~Pp~~~L~~~~~~~~~~~~~~~i~vgAQnv~~~~~G 80 (355)
T PRK14905 1 MAKKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAASETGHPKIKIGAQNMNAKDKG 80 (355)
T ss_pred CCCceEEEEECCcCCCHHHHHHHHHHHHHhhhhccccCCceEEEECCHHHHHHHHHHhhcccCCCceEEEeccCCCCCCC
Confidence 66889999999999999999999999865321 1224689999999999999987663 4799999999999999
Q ss_pred CcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 026522 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD 153 (237)
Q Consensus 74 A~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~ 153 (237)
||||||||+||+|+||+||||||||||++|+|||++|++|+++|+++||+||+||||++++|++|++.+++.+||+..++
T Consensus 81 a~TGEVS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~ 160 (355)
T PRK14905 81 QFTGEISPLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLH 160 (355)
T ss_pred CccCcCCHHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC--CCCCeEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522 154 RVS--SWSNIVLAYEPVWAIGT-GKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 154 ~i~--~~~~iiIAYEPvWAIGt-G~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~ 225 (237)
+++ .+.+++|||||+||||| |++|||+++|++|++||++|.+.++.. ++++|||||| ||||+|+.+++..
T Consensus 161 ~v~~~~~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~-~~~v~ILYGG-SV~~~N~~~l~~~ 233 (355)
T PRK14905 161 GVSAEQLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEE-SKKIPVLYGG-SVNLENANELIMK 233 (355)
T ss_pred cCCHhhcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccc-cCceeEEEeC-cCCHHHHHHHhcC
Confidence 874 47899999999999998 899999999999999999999999876 7889999999 9999999998653
No 13
>PRK14565 triosephosphate isomerase; Provisional
Probab=100.00 E-value=9.6e-79 Score=535.01 Aligned_cols=207 Identities=35% Similarity=0.572 Sum_probs=191.8
Q ss_pred cceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHH
Q 026522 4 KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEM 83 (237)
Q Consensus 4 ~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~m 83 (237)
||||+||||||++.+++.+|++.+.........++++++||||++|..+.+.. +++.+|||||++.++|||||||||+|
T Consensus 2 ~~~v~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~v~v~iaP~~~~l~~~~~~~-~~i~vgAQnv~~~~~Ga~TGevS~~m 80 (237)
T PRK14565 2 SFLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVECN-PNIKLGAQNCFYGSSGGYTGEISAKM 80 (237)
T ss_pred CcEEEEECccccCHHHHHHHHHHHHhhccccCCCceEEEECCHHHHHHHHHhc-CCceEEecccccccCCCccCccCHHH
Confidence 67999999999999999999999976432112569999999999999987743 67999999999999999999999999
Q ss_pred HHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEE
Q 026522 84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVL 163 (237)
Q Consensus 84 Lkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiI 163 (237)
|||+||+||||||||||++|+|||+.|++|+++|+++||+||+||||++++|+.|++.+++.+||+..+++ +++++|
T Consensus 81 Lkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~---~~~ivI 157 (237)
T PRK14565 81 LKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPK---HGEFII 157 (237)
T ss_pred HHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcC---CCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875 468999
Q ss_pred EEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 164 AYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 164 AYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
||||+||||||++|+||+|+++|++||++. +++|||||| ||||+|+.+++.
T Consensus 158 AYEPvWAIGtG~~a~~e~i~~~~~~Ir~~~---------~~~~IlYGG-SV~~~N~~~l~~ 208 (237)
T PRK14565 158 AYEPVWAIGGSTIPSNDAIAEAFEIIRSYD---------SKSHIIYGG-SVNQENIRDLKS 208 (237)
T ss_pred EECCHHHhCCCCCCCHHHHHHHHHHHHHhC---------CCceEEEcC-ccCHhhHHHHhc
Confidence 999999999999999999999999999862 358999999 999999999886
No 14
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=100.00 E-value=1.2e-78 Score=594.85 Aligned_cols=221 Identities=47% Similarity=0.690 Sum_probs=208.0
Q ss_pred CCcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccC
Q 026522 2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEIS 80 (237)
Q Consensus 2 ~r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiS 80 (237)
||+|+|+||||||++.+++.+|++.+.....+ .+.+++|||||++|..+.+.+. +++.+||||||+.++||||||||
T Consensus 396 Mrk~~i~gNWKMn~~~~~~~~~~~~l~~~~~~--~~~~v~v~Pp~~~L~~~~~~l~~~~i~vgAQnv~~~~~GA~TGEVS 473 (645)
T PRK13962 396 PRKPIIAGNWKMNKTPAEAKEFVNELKKYVKD--AQAEVVVCPPFTALPSVKEAVDGSNIKLGAQNVFYEEKGAYTGEIS 473 (645)
T ss_pred CCCcEEEEECCcCcCHHHHHHHHHHHHhhccC--CCCeEEEECCHHHHHHHHHHhcCCCeEEEcccccccccCCccCcCC
Confidence 58999999999999999999999988764322 3469999999999999988777 78999999999999999999999
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC--CC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SW 158 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~--~~ 158 (237)
|+||+|+||+||||||||||++|+|||+.|++|+++|+++||+||+|||||+++|++|+|.+++.+||+.+|++++ .+
T Consensus 474 a~mLkd~G~~~viiGHSERR~~f~Etd~~V~~K~~~al~~GL~pIvCVGEtl~ere~g~t~~vv~~Ql~~~l~~v~~~~~ 553 (645)
T PRK13962 474 GPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQV 553 (645)
T ss_pred HHHHHHcCCCEEEECcccccCCcCcchHHHHHHHHHHHHCCCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHccCCHhHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875 37
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~ 225 (237)
++++||||||||||||++|||+++|++|++||++|+++|+.++++++|||||| ||||+|+.+|+..
T Consensus 554 ~~ivIAYEPVWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGG-SV~~~N~~~l~~~ 619 (645)
T PRK13962 554 KKVVIAYEPVWAIGTGKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGG-SVKSENAAGLFNQ 619 (645)
T ss_pred CcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecC-CCCHhHHHHHhcC
Confidence 89999999999999999999999999999999999999998889999999999 9999999998754
No 15
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=100.00 E-value=7e-70 Score=470.10 Aligned_cols=187 Identities=33% Similarity=0.429 Sum_probs=166.5
Q ss_pred eEEEecc-cCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHH
Q 026522 6 FVGGNWK-CNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEML 84 (237)
Q Consensus 6 ~i~~NWK-mn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mL 84 (237)
||+|||| ||++..+..+|++.+..... ...++++++||||++|..+.+.+ .+.+|||||++.++|||||||||+||
T Consensus 1 ~i~~NwK~mn~~~~~~~~~~~~~~~~~~-~~~~~~v~v~Pp~~~L~~~~~~~--~i~vgAQn~~~~~~Ga~TGevS~~mL 77 (205)
T TIGR00419 1 LVIGNWKTYNESRGMRALEVAKIAEEVA-SEAGVAVAVAPPFVDLPMIKREV--EIPVYAQHVDAVLSGAHTGEISAEML 77 (205)
T ss_pred CEEEEhhhcCCCHHHHHHHHHHHHhhcc-ccCCcEEEEECCHHHHHHHHHhc--CceEEecccccccCCCccCcCCHHHH
Confidence 5789999 99999999999988866432 23568999999999999998865 39999999999999999999999999
Q ss_pred HhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEE
Q 026522 85 VNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLA 164 (237)
Q Consensus 85 kd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIA 164 (237)
||+||+|||||||||| |+||| |++|+++|+++||+||+|| +++.+|+... .+++++||
T Consensus 78 kd~G~~~viiGHSERR--f~Etd--i~~Kv~~a~~~gl~~IvCi-------------~~v~~q~~~~-----~~~~~vIA 135 (205)
T TIGR00419 78 KDIGAKGTLINHSERR--MKLAD--IEKKIARLKELGLTSVVCT-------------NNVLTTAAAA-----ALEPDVVA 135 (205)
T ss_pred HHcCCCEEEECcccCC--CCccH--HHHHHHHHHHCCCEEEEEE-------------HHHHHHHHhh-----hhcCeEEE
Confidence 9999999999999999 99999 9999999999999999999 3455555432 25789999
Q ss_pred EcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 165 YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 165 YEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
|||+||||||++|||+++|++|++|| ++.++++++|||||| ||||+|+.+++.
T Consensus 136 YEPvWAIGtG~~as~~~~~~v~~~ir------~~~~~~~~~~IlYGG-SV~~~N~~~l~~ 188 (205)
T TIGR00419 136 VEPPELIGTGIPVSPAQPEVVHGSVR------AVKEVNESVRVLCGA-GISTGEDAELAA 188 (205)
T ss_pred ECCHHHhCCCCCCCHHHHHHHHHHHH------hhhhhcCCceEEEeC-CCCHHHHHHHhc
Confidence 99999999999999999999999999 344567889999999 999999999864
No 16
>PRK04302 triosephosphate isomerase; Provisional
Probab=100.00 E-value=5.7e-46 Score=323.61 Aligned_cols=187 Identities=24% Similarity=0.276 Sum_probs=160.0
Q ss_pred CCcceEEEecccCC--CHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCccccc
Q 026522 2 GRKFFVGGNWKCNG--TPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEI 79 (237)
Q Consensus 2 ~r~~~i~~NWKmn~--~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGei 79 (237)
||+|+|++|||||+ +.+++.+|++.+.+. +...++++++||||++|..+.+.. ++.++|||+++.+.|+||||+
T Consensus 1 m~~~~~~~n~K~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~l~~v~~~~--~i~v~aq~~~~~~~G~~tg~~ 76 (223)
T PRK04302 1 MKYPIILVNFKTYPEATGKDALEIAKAAEKV--SKETGVRIAVAPQALDIRRVAEEV--DIPVYAQHVDPVEPGSHTGHI 76 (223)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHhc--cccCCCEEEEECCHHHHHHHHHhc--CCeEEeccCCCCCCCCchhhh
Confidence 38899999999999 689999999988763 223468999999999999988764 789999999999999999999
Q ss_pred CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (237)
Q Consensus 80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~ 159 (237)
|++||+++|+++||+||||||..|+| +++|++.|.++||.||+|+||.. |++.+. ..+
T Consensus 77 ~~~~l~~~G~~~vii~~ser~~~~~e----~~~~v~~a~~~Gl~~I~~v~~~~--------------~~~~~~----~~~ 134 (223)
T PRK04302 77 LPEAVKDAGAVGTLINHSERRLTLAD----IEAVVERAKKLGLESVVCVNNPE--------------TSAAAA----ALG 134 (223)
T ss_pred HHHHHHHcCCCEEEEeccccccCHHH----HHHHHHHHHHCCCeEEEEcCCHH--------------HHHHHh----cCC
Confidence 99999999999999999999998887 77888999999999999999942 333322 245
Q ss_pred CeEEEEcccccccCCCC---CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 160 NIVLAYEPVWAIGTGKV---ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 160 ~iiIAYEPvWAIGtG~~---as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
+.+|+|||+|+||||+. ++|++++++++.||+. ..++||+||| ||+..|....++
T Consensus 135 ~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~---------~~~~pvi~Gg-gI~~~e~~~~~~ 192 (223)
T PRK04302 135 PDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV---------NPDVKVLCGA-GISTGEDVKAAL 192 (223)
T ss_pred CCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc---------cCCCEEEEEC-CCCCHHHHHHHH
Confidence 67999999999999977 7899999999999974 2358999999 997777666544
No 17
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.79 E-value=0.00012 Score=65.75 Aligned_cols=112 Identities=23% Similarity=0.190 Sum_probs=79.2
Q ss_pred cCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEE-EeCCcHHHHhcCCcHHHHHHHHHHHHhccCC
Q 026522 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGETLEQREAGSTMDVVAAQTKAIADRVSS 157 (237)
Q Consensus 79 iSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~ 157 (237)
=-.++++++|++.+||- +.-+.|..+.+ +.+.++||.+|+ |.-.+.++| ++.+.+
T Consensus 108 ~f~~~~~~aGvdGviip----DLp~ee~~~~~----~~~~~~gl~~I~lvap~t~~er------------i~~i~~---- 163 (258)
T PRK13111 108 RFAADAAEAGVDGLIIP----DLPPEEAEELR----AAAKKHGLDLIFLVAPTTTDER------------LKKIAS---- 163 (258)
T ss_pred HHHHHHHHcCCcEEEEC----CCCHHHHHHHH----HHHHHcCCcEEEEeCCCCCHHH------------HHHHHH----
Confidence 34899999999999995 44455555554 888999999999 777775554 222222
Q ss_pred CCCeEEEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHccc
Q 026522 158 WSNIVLAYEPVWAIG-TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLSF 227 (237)
Q Consensus 158 ~~~iiIAYEPvWAIG-tG~~-as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~~ 227 (237)
..+-.|.| +-.+| ||.. ..++.+.+..+.||+. .++||+.|+ ++ +|+++.+++...-
T Consensus 164 ~s~gfIY~--vs~~GvTG~~~~~~~~~~~~i~~vk~~----------~~~pv~vGf-GI~~~e~v~~~~~~AD 223 (258)
T PRK13111 164 HASGFVYY--VSRAGVTGARSADAADLAELVARLKAH----------TDLPVAVGF-GISTPEQAAAIAAVAD 223 (258)
T ss_pred hCCCcEEE--EeCCCCCCcccCCCccHHHHHHHHHhc----------CCCcEEEEc-ccCCHHHHHHHHHhCC
Confidence 12334555 44577 7764 4567778788888863 248999999 99 8899999886533
No 18
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.21 E-value=0.046 Score=47.23 Aligned_cols=166 Identities=13% Similarity=0.027 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEE---eeecccccc--CcCcccccCHHHHHhCCCCeE
Q 026522 18 EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV---AAQNCWVKK--GGAFTGEISAEMLVNLEIPWV 92 (237)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~i---gAQnv~~~~--~GA~TGeiSa~mLkd~G~~~v 92 (237)
....++++...+ .++..+...++..+..+.+. ..+.+ -.|+....+ -|+++.+ .+++++.|++++
T Consensus 27 ~~i~~~a~~~~~------~G~~~~~~~~~~~~~~i~~~--~~iPil~~~~~~~~~~~~~ig~~~~~--~~~a~~aGad~I 96 (219)
T cd04729 27 EIMAAMALAAVQ------GGAVGIRANGVEDIRAIRAR--VDLPIIGLIKRDYPDSEVYITPTIEE--VDALAAAGADII 96 (219)
T ss_pred HHHHHHHHHHHH------CCCeEEEcCCHHHHHHHHHh--CCCCEEEEEecCCCCCCceeCCCHHH--HHHHHHcCCCEE
Confidence 445555555443 23444445777777777654 23443 357664222 3565554 489999999999
Q ss_pred EecccccccccccCHHHHHHHHHHHHHCC-CeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccc
Q 026522 93 ILGHSERRLILNELNEFVGDKVAYALSQG-LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAI 171 (237)
Q Consensus 93 iIGHSERR~~f~Etd~~V~~Kv~~al~~g-l~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAI 171 (237)
++.+++++.-.+|..+.+ ++.+.+.| +..++++- |.++. ....+ ..-.+|..++.=..
T Consensus 97 ~~~~~~~~~p~~~~~~~~---i~~~~~~g~~~iiv~v~-t~~ea-------------~~a~~----~G~d~i~~~~~g~t 155 (219)
T cd04729 97 ALDATDRPRPDGETLAEL---IKRIHEEYNCLLMADIS-TLEEA-------------LNAAK----LGFDIIGTTLSGYT 155 (219)
T ss_pred EEeCCCCCCCCCcCHHHH---HHHHHHHhCCeEEEECC-CHHHH-------------HHHHH----cCCCEEEccCcccc
Confidence 999999874333333333 35566666 76666653 33321 11111 12223433332100
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHcc
Q 026522 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLS 226 (237)
Q Consensus 172 GtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~ 226 (237)
+......... -+..+.+|+.+ ++||+.+| ++ +++|+.+++..|
T Consensus 156 ~~~~~~~~~~-~~~l~~i~~~~----------~ipvia~G-GI~~~~~~~~~l~~G 199 (219)
T cd04729 156 EETAKTEDPD-FELLKELRKAL----------GIPVIAEG-RINSPEQAAKALELG 199 (219)
T ss_pred ccccCCCCCC-HHHHHHHHHhc----------CCCEEEeC-CCCCHHHHHHHHHCC
Confidence 1111011111 12334444321 38999999 99 799999988765
No 19
>PLN02591 tryptophan synthase
Probab=97.19 E-value=0.0043 Score=55.56 Aligned_cols=105 Identities=20% Similarity=0.236 Sum_probs=73.2
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc-HHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET-LEQREAGSTMDVVAAQTKAIADRVSSWS 159 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt-~e~r~~g~~~~vl~~Ql~~~l~~i~~~~ 159 (237)
.+.+++.|++.+||= ..-+.|.++.. +.|.++||.+|+||--| .++| ++.+.+. ..
T Consensus 99 ~~~~~~aGv~Gviip----DLP~ee~~~~~----~~~~~~gl~~I~lv~Ptt~~~r------------i~~ia~~---~~ 155 (250)
T PLN02591 99 MATIKEAGVHGLVVP----DLPLEETEALR----AEAAKNGIELVLLTTPTTPTER------------MKAIAEA---SE 155 (250)
T ss_pred HHHHHHcCCCEEEeC----CCCHHHHHHHH----HHHHHcCCeEEEEeCCCCCHHH------------HHHHHHh---CC
Confidence 678999999999997 34455555555 88999999999999554 3444 2333321 12
Q ss_pred CeEEEEccccccc----CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHc
Q 026522 160 NIVLAYEPVWAIG----TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLL 225 (237)
Q Consensus 160 ~iiIAYEPvWAIG----tG~~-as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~ 225 (237)
.++ | .|+ ||.. ..++++.+..+.+|+. .++||+.|- +++ +++++.++..
T Consensus 156 gFI--Y----~Vs~~GvTG~~~~~~~~~~~~i~~vk~~----------~~~Pv~vGF-GI~~~e~v~~~~~~ 210 (250)
T PLN02591 156 GFV--Y----LVSSTGVTGARASVSGRVESLLQELKEV----------TDKPVAVGF-GISKPEHAKQIAGW 210 (250)
T ss_pred CcE--E----EeeCCCCcCCCcCCchhHHHHHHHHHhc----------CCCceEEeC-CCCCHHHHHHHHhc
Confidence 232 2 444 4433 2378888888888863 248999999 999 9999997776
No 20
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=96.99 E-value=0.0031 Score=58.43 Aligned_cols=124 Identities=15% Similarity=0.249 Sum_probs=86.5
Q ss_pred ccccCcCcccc---cCHHHHHhC-CCCeEEe-cccccccccccCHHHHHHHHHHHHHCCCeE-EEEeCCcHHHHhcCCcH
Q 026522 68 WVKKGGAFTGE---ISAEMLVNL-EIPWVIL-GHSERRLILNELNEFVGDKVAYALSQGLKV-IACVGETLEQREAGSTM 141 (237)
Q Consensus 68 ~~~~~GA~TGe---iSa~mLkd~-G~~~viI-GHSERR~~f~Etd~~V~~Kv~~al~~gl~p-IvCiGEt~e~r~~g~~~ 141 (237)
=+...|+||-+ -.+.|.+++ |.+|+=+ =|.|+|..+.+..++| ++.+...+.|+.+ +||.....+.|
T Consensus 140 lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v-~aa~~L~~~Gf~v~~yc~~d~~~a~------ 212 (326)
T PRK11840 140 LPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETL-KATEILVKEGFQVMVYCSDDPIAAK------ 212 (326)
T ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHHH------
Confidence 35677999887 457788887 4577633 3778999999888777 3334444459999 99998764332
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEcc-cccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-Chhh
Q 026522 142 DVVAAQTKAIADRVSSWSNIVLAYEP-VWAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSH 218 (237)
Q Consensus 142 ~vl~~Ql~~~l~~i~~~~~iiIAYEP-vWAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~N 218 (237)
++ .. ... +|+|| .-.||||+.. +|+.++.+.+. ..+||+.|+ ++ +|+.
T Consensus 213 -----~l----~~---~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~--------------~~vpVivdA-GIg~~sd 263 (326)
T PRK11840 213 -----RL----ED---AGA--VAVMPLGAPIGSGLGIQNPYTIRLIVEG--------------ATVPVLVDA-GVGTASD 263 (326)
T ss_pred -----HH----Hh---cCC--EEEeeccccccCCCCCCCHHHHHHHHHc--------------CCCcEEEeC-CCCCHHH
Confidence 22 22 233 89999 9999999997 55555433322 248999998 87 4788
Q ss_pred HHHHHHccc
Q 026522 219 VLVHLLLSF 227 (237)
Q Consensus 219 a~~~~~~~~ 227 (237)
+...+-+|+
T Consensus 264 a~~AmelGa 272 (326)
T PRK11840 264 AAVAMELGC 272 (326)
T ss_pred HHHHHHcCC
Confidence 888877775
No 21
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.87 E-value=0.037 Score=48.94 Aligned_cols=171 Identities=14% Similarity=0.127 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccH-----HH------------HHHhcC--CCcEEeeecc-ccccCc
Q 026522 14 NGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFL-----GL------------VKSSLR--PGFHVAAQNC-WVKKGG 73 (237)
Q Consensus 14 n~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L-----~~------------~~~~~~--~~i~igAQnv-~~~~~G 73 (237)
+.+.++..++++.+.+. . +-+|+.+-+|.+.. .. +.+.++ .++.+ .+ .....
T Consensus 14 ~p~~~~~~~~~~~l~~~-a---d~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl---~lM~y~n~- 85 (244)
T PRK13125 14 YPNVESFKEFIIGLVEL-V---DILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPI---ILMTYLED- 85 (244)
T ss_pred CCCHHHHHHHHHHHHhh-C---CEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCE---EEEEecch-
Confidence 45778888888877653 2 45788775555521 11 111111 23333 11 11111
Q ss_pred CcccccC-HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 026522 74 AFTGEIS-AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA 152 (237)
Q Consensus 74 A~TGeiS-a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l 152 (237)
-.+|.-. .+.+++.|++++++ |. ..-|+.+...+=++.+.++|+.+++|+.-+.. . +.++.++
T Consensus 86 ~~~~~~~~i~~~~~~Gadgvii-~d----lp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~-------~----e~l~~~~ 149 (244)
T PRK13125 86 YVDSLDNFLNMARDVGADGVLF-PD----LLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP-------D----LLIHRLS 149 (244)
T ss_pred hhhCHHHHHHHHHHcCCCEEEE-CC----CCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC-------H----HHHHHHH
Confidence 1233333 67899999999999 31 11233334445558899999999999986421 1 1233444
Q ss_pred hccCCCCC-eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHcc
Q 026522 153 DRVSSWSN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLS 226 (237)
Q Consensus 153 ~~i~~~~~-iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~ 226 (237)
+.. +. +++..+|. ||.. =++++.+..+.+|+.. ++.+|..|| +| +++|++.++.-|
T Consensus 150 ~~~---~~~l~msv~~~----~g~~-~~~~~~~~i~~lr~~~---------~~~~i~v~g-GI~~~e~i~~~~~~g 207 (244)
T PRK13125 150 KLS---PLFIYYGLRPA----TGVP-LPVSVERNIKRVRNLV---------GNKYLVVGF-GLDSPEDARDALSAG 207 (244)
T ss_pred HhC---CCEEEEEeCCC----CCCC-chHHHHHHHHHHHHhc---------CCCCEEEeC-CcCCHHHHHHHHHcC
Confidence 421 22 33577885 4543 3555565666666542 124799999 99 999999976554
No 22
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=96.78 E-value=0.15 Score=43.02 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=67.2
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~ 160 (237)
+++++++|++++++ |.+- ++ ...+-++.+.+.|+.+++=+.-+. . .++++...... .
T Consensus 72 ~~~~~~~gadgv~v-h~~~------~~-~~~~~~~~~~~~g~~~~~~~~~~t-------~----~e~~~~~~~~~----d 128 (210)
T TIGR01163 72 IEDFAEAGADIITV-HPEA------SE-HIHRLLQLIKDLGAKAGIVLNPAT-------P----LEFLEYVLPDV----D 128 (210)
T ss_pred HHHHHHcCCCEEEE-ccCC------ch-hHHHHHHHHHHcCCcEEEEECCCC-------C----HHHHHHHHhhC----C
Confidence 88999999999988 6532 22 233444777788988877543220 1 11233332221 1
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
.|.|=|+..-+||....+... +..+.+|+.+.+. ...+||+-+| +++++|+++++.-|
T Consensus 129 -~i~~~~~~~g~tg~~~~~~~~-~~i~~i~~~~~~~-----~~~~~i~v~G-GI~~env~~l~~~g 186 (210)
T TIGR01163 129 -LVLLMSVNPGFGGQKFIPDTL-EKIREVRKMIDEN-----GLSILIEVDG-GVNDDNARELAEAG 186 (210)
T ss_pred -EEEEEEEcCCCCcccccHHHH-HHHHHHHHHHHhc-----CCCceEEEEC-CcCHHHHHHHHHcC
Confidence 233434444456655445444 4456666655321 2346899999 99999999977544
No 23
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.68 E-value=0.021 Score=50.52 Aligned_cols=106 Identities=23% Similarity=0.204 Sum_probs=67.2
Q ss_pred HHHHHhCCCCeEEec--ccccccccccCHHHHHHHHHHHHHCCCeEEE-EeCCcHHHHhcCCcHHHHHHHHHHHHhccCC
Q 026522 81 AEMLVNLEIPWVILG--HSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGETLEQREAGSTMDVVAAQTKAIADRVSS 157 (237)
Q Consensus 81 a~mLkd~G~~~viIG--HSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~ 157 (237)
.+.+++.|++.+++- |.| |.++. ++.+.++|+.+++ |--.|.++| ++.+++. .
T Consensus 97 i~~~~~aG~~giiipDl~~e------e~~~~----~~~~~~~g~~~i~~i~P~T~~~~------------i~~i~~~--~ 152 (242)
T cd04724 97 LRDAKEAGVDGLIIPDLPPE------EAEEF----REAAKEYGLDLIFLVAPTTPDER------------IKKIAEL--A 152 (242)
T ss_pred HHHHHHCCCcEEEECCCCHH------HHHHH----HHHHHHcCCcEEEEeCCCCCHHH------------HHHHHhh--C
Confidence 678999999999984 222 33333 4888999999988 555554433 2233331 1
Q ss_pred CCC-eEEEEcccccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHc
Q 026522 158 WSN-IVLAYEPVWAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLL 225 (237)
Q Consensus 158 ~~~-iiIAYEPvWAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~ 225 (237)
..- .+++.+|+ ||... -++.+.+.++.+|+. .++||+.|| +|+ ++|++.+...
T Consensus 153 ~~~vy~~s~~g~----tG~~~~~~~~~~~~i~~lr~~----------~~~pI~vgg-GI~~~e~~~~~~~~ 208 (242)
T cd04724 153 SGFIYYVSRTGV----TGARTELPDDLKELIKRIRKY----------TDLPIAVGF-GISTPEQAAEVAKY 208 (242)
T ss_pred CCCEEEEeCCCC----CCCccCCChhHHHHHHHHHhc----------CCCcEEEEc-cCCCHHHHHHHHcc
Confidence 112 33567885 44322 345566666667653 248999999 999 6699997654
No 24
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=96.20 E-value=0.25 Score=41.59 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=67.0
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc-HHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET-LEQREAGSTMDVVAAQTKAIADRVSSWS 159 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt-~e~r~~g~~~~vl~~Ql~~~l~~i~~~~ 159 (237)
.+++.++|++++++ +.+..+....-++.+.+.|+.+.+=++.+ .++ +++.....
T Consensus 73 ~~~~~~~g~dgv~v--------h~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~~----- 127 (211)
T cd00429 73 IEAFAKAGADIITF--------HAEATDHLHRTIQLIKELGMKAGVALNPGTPVE------------VLEPYLDE----- 127 (211)
T ss_pred HHHHHHcCCCEEEE--------CccchhhHHHHHHHHHHCCCeEEEEecCCCCHH------------HHHHHHhh-----
Confidence 77888999999865 11111233344677888998887766532 221 12222221
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
...|.|=|++.-+||....+ ...+..+.+|+...+. +.++|++-+| +++++|+.+++..|
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~-~~~~~i~~~~~~~~~~-----~~~~pi~v~G-GI~~env~~~~~~g 187 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIP-EVLEKIRKLRELIPEN-----NLNLLIEVDG-GINLETIPLLAEAG 187 (211)
T ss_pred CCEEEEEEECCCCCCcccCH-HHHHHHHHHHHHHHhc-----CCCeEEEEEC-CCCHHHHHHHHHcC
Confidence 12333334443445654433 4445566677665322 2347999999 99999999987654
No 25
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.45 E-value=1.1 Score=36.18 Aligned_cols=136 Identities=18% Similarity=0.069 Sum_probs=77.8
Q ss_pred CCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhc
Q 026522 58 PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREA 137 (237)
Q Consensus 58 ~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~ 137 (237)
.++.+++|....... .+ -+.++..+++.|++++.++.+.... -+....+-++++... .++..++.+.-..+...
T Consensus 56 ~~~~~~~~~~~~~~~-~~-~~~~a~~~~~~g~d~v~l~~~~~~~--~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~- 129 (200)
T cd04722 56 TDLPLGVQLAINDAA-AA-VDIAAAAARAAGADGVEIHGAVGYL--AREDLELIRELREAV-PDVKVVVKLSPTGELAA- 129 (200)
T ss_pred cCCcEEEEEccCCch-hh-hhHHHHHHHHcCCCEEEEeccCCcH--HHHHHHHHHHHHHhc-CCceEEEEECCCCccch-
Confidence 456788887653321 11 1123789999999999999887521 111222333444333 37877777754321100
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCCh-
Q 026522 138 GSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINV- 216 (237)
Q Consensus 138 g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~- 216 (237)
.+ +. ...-..|.+.+.|.-+++....+.. ...++.. +. ..++||+++| +++.
T Consensus 130 --------~~----~~---~~g~d~i~~~~~~~~~~~~~~~~~~----~~~~~~~-~~------~~~~pi~~~G-Gi~~~ 182 (200)
T cd04722 130 --------AA----AE---EAGVDEVGLGNGGGGGGGRDAVPIA----DLLLILA-KR------GSKVPVIAGG-GINDP 182 (200)
T ss_pred --------hh----HH---HcCCCEEEEcCCcCCCCCccCchhH----HHHHHHH-Hh------cCCCCEEEEC-CCCCH
Confidence 01 11 1223467888888766666554421 1122211 11 2348999999 9988
Q ss_pred hhHHHHHHcc
Q 026522 217 SHVLVHLLLS 226 (237)
Q Consensus 217 ~Na~~~~~~~ 226 (237)
+|+.+++..|
T Consensus 183 ~~~~~~~~~G 192 (200)
T cd04722 183 EDAAEALALG 192 (200)
T ss_pred HHHHHHHHhC
Confidence 9999988864
No 26
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=95.19 E-value=0.52 Score=42.19 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=68.5
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~ 159 (237)
.+.+++.|++.+|+= .+..+....=++.+.++|+.++ +|--.|..+| ++.+++.. .
T Consensus 108 ~~~~~~aGvdgviip--------Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~er------------i~~i~~~~---~ 164 (256)
T TIGR00262 108 YAKCKEVGVDGVLVA--------DLPLEESGDLVEAAKKHGVKPIFLVAPNADDER------------LKQIAEKS---Q 164 (256)
T ss_pred HHHHHHcCCCEEEEC--------CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHH------------HHHHHHhC---C
Confidence 778999999999883 3344455555688999999988 6666664443 33333321 1
Q ss_pred CeE--EEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHcc
Q 026522 160 NIV--LAYEPVWAIG-TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLLS 226 (237)
Q Consensus 160 ~ii--IAYEPvWAIG-tG~~-as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~~ 226 (237)
.++ +..+ | ||.. .-++++.+.++.+|+.. +.||..|| +++ |++++.+...|
T Consensus 165 gfiy~vs~~-----G~TG~~~~~~~~~~~~i~~lr~~~----------~~pi~vgf-GI~~~e~~~~~~~~G 220 (256)
T TIGR00262 165 GFVYLVSRA-----GVTGARNRAASALNELVKRLKAYS----------AKPVLVGF-GISKPEQVKQAIDAG 220 (256)
T ss_pred CCEEEEECC-----CCCCCcccCChhHHHHHHHHHhhc----------CCCEEEeC-CCCCHHHHHHHHHcC
Confidence 122 2322 3 5553 23444666666666531 25899999 997 99999976653
No 27
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=95.17 E-value=0.079 Score=47.50 Aligned_cols=120 Identities=17% Similarity=0.254 Sum_probs=78.8
Q ss_pred cccCcCcccc---cCHHHHHhCCC-CeE---EecccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCc
Q 026522 69 VKKGGAFTGE---ISAEMLVNLEI-PWV---ILGHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGST 140 (237)
Q Consensus 69 ~~~~GA~TGe---iSa~mLkd~G~-~~v---iIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~ 140 (237)
+...|+||-+ -.+.|.++++. +|+ ++|. -+.++.+..++| ++.+...+.|+.++ +|......-
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d--~~~Llpd~~~tv-~aa~~L~~~Gf~vlpyc~dd~~~a------ 137 (248)
T cd04728 67 PNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGD--DKTLLPDPIETL-KAAEILVKEGFTVLPYCTDDPVLA------ 137 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecC--ccccccCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHH------
Confidence 4577999877 35677788754 555 3444 556677766665 34444445599999 999887433
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEccc--ccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-Ch
Q 026522 141 MDVVAAQTKAIADRVSSWSNIVLAYEPV--WAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NV 216 (237)
Q Consensus 141 ~~vl~~Ql~~~l~~i~~~~~iiIAYEPv--WAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~ 216 (237)
++|.. .....| |+ -.||||+.. +|+.++ .|++. .++||+.+| ++ +|
T Consensus 138 -----r~l~~-------~G~~~v---mPlg~pIGsg~Gi~~~~~I~----~I~e~----------~~vpVI~eg-GI~tp 187 (248)
T cd04728 138 -----KRLED-------AGCAAV---MPLGSPIGSGQGLLNPYNLR----IIIER----------ADVPVIVDA-GIGTP 187 (248)
T ss_pred -----HHHHH-------cCCCEe---CCCCcCCCCCCCCCCHHHHH----HHHHh----------CCCcEEEeC-CCCCH
Confidence 22322 233444 99 569999876 555444 44432 248999999 88 48
Q ss_pred hhHHHHHHccc
Q 026522 217 SHVLVHLLLSF 227 (237)
Q Consensus 217 ~Na~~~~~~~~ 227 (237)
+-+...+.+|+
T Consensus 188 eda~~AmelGA 198 (248)
T cd04728 188 SDAAQAMELGA 198 (248)
T ss_pred HHHHHHHHcCC
Confidence 99999888775
No 28
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.14 E-value=0.29 Score=42.03 Aligned_cols=108 Identities=11% Similarity=-0.050 Sum_probs=65.5
Q ss_pred CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (237)
Q Consensus 80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~ 159 (237)
.++.+.++|++.|++|.+-... +.+.+=++.+...|+.+++++- +.++ ++.+.. +.
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~------~~~~~~~~~~~~~g~~~~v~v~-~~~e-------------~~~~~~----~g 141 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDD------EQLKELYELARELGMEVLVEVH-DEEE-------------LERALA----LG 141 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCH------HHHHHHHHHHHHcCCeEEEEEC-CHHH-------------HHHHHH----cC
Confidence 5788999999999999986542 3344444667889999999995 3322 222222 23
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHcc
Q 026522 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLLS 226 (237)
Q Consensus 160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~~ 226 (237)
..++.|=|.. +....++ . +....+++. + ...+|++.+| +++ ++|+.+++..|
T Consensus 142 ~~~i~~t~~~----~~~~~~~-~-~~~~~l~~~----~----~~~~pvia~g-GI~s~edi~~~~~~G 194 (217)
T cd00331 142 AKIIGINNRD----LKTFEVD-L-NTTERLAPL----I----PKDVILVSES-GISTPEDVKRLAEAG 194 (217)
T ss_pred CCEEEEeCCC----ccccCcC-H-HHHHHHHHh----C----CCCCEEEEEc-CCCCHHHHHHHHHcC
Confidence 3456665432 1211122 2 222222221 1 1247999999 995 69999998875
No 29
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=95.06 E-value=0.83 Score=38.92 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=62.4
Q ss_pred HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522 82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGE-TLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (237)
Q Consensus 82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE-t~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~ 160 (237)
+.++++|++++++ +.+.++....-++.+.+.|+.+.+=++. +..++ ++...... +-
T Consensus 78 ~~~~~~g~d~v~v--------h~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~------------~~~~~~~~---d~ 134 (220)
T PRK05581 78 PDFAKAGADIITF--------HVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEP------------LEDVLDLL---DL 134 (220)
T ss_pred HHHHHcCCCEEEE--------eeccchhHHHHHHHHHHcCCEEEEEECCCCCHHH------------HHHHHhhC---CE
Confidence 6677999999644 2222233344468888899988876652 32222 12222211 11
Q ss_pred -eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522 161 -IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 161 -iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~ 225 (237)
.+.+++| -+||. .......+..+.+|++.... +-..+|.-+| +++++|+.++...
T Consensus 135 i~~~~~~~---g~tg~-~~~~~~~~~i~~~~~~~~~~-----~~~~~i~v~G-GI~~~nv~~l~~~ 190 (220)
T PRK05581 135 VLLMSVNP---GFGGQ-KFIPEVLEKIRELRKLIDER-----GLDILIEVDG-GINADNIKECAEA 190 (220)
T ss_pred EEEEEECC---CCCcc-cccHHHHHHHHHHHHHHHhc-----CCCceEEEEC-CCCHHHHHHHHHc
Confidence 1234445 34554 44444455566666654320 1014577888 8999999998763
No 30
>PRK00208 thiG thiazole synthase; Reviewed
Probab=94.97 E-value=0.1 Score=46.89 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=78.2
Q ss_pred cccCcCcccc---cCHHHHHhCCC-CeE---EecccccccccccCHHHHHHHHHHHHHCCCeEE-EEeCCcHHHHhcCCc
Q 026522 69 VKKGGAFTGE---ISAEMLVNLEI-PWV---ILGHSERRLILNELNEFVGDKVAYALSQGLKVI-ACVGETLEQREAGST 140 (237)
Q Consensus 69 ~~~~GA~TGe---iSa~mLkd~G~-~~v---iIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI-vCiGEt~e~r~~g~~ 140 (237)
+...|++|-| -.+.|.++++. +|+ +||. .+..+.+..++| ++.+...+.|+.++ +|.....+-
T Consensus 67 pNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d--~~~llpd~~~tv-~aa~~L~~~Gf~vlpyc~~d~~~a------ 137 (250)
T PRK00208 67 PNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGD--DKTLLPDPIETL-KAAEILVKEGFVVLPYCTDDPVLA------ 137 (250)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecC--CCCCCcCHHHHH-HHHHHHHHCCCEEEEEeCCCHHHH------
Confidence 5577888877 35677788764 555 4554 455566666655 44444445599999 999876432
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEccc--ccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-Ch
Q 026522 141 MDVVAAQTKAIADRVSSWSNIVLAYEPV--WAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NV 216 (237)
Q Consensus 141 ~~vl~~Ql~~~l~~i~~~~~iiIAYEPv--WAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~ 216 (237)
++|.. .....| |+ -.||||+.. +|+. .+.|++. .++||+.+| ++ +|
T Consensus 138 -----k~l~~-------~G~~~v---mPlg~pIGsg~gi~~~~~----i~~i~e~----------~~vpVIvea-GI~tp 187 (250)
T PRK00208 138 -----KRLEE-------AGCAAV---MPLGAPIGSGLGLLNPYN----LRIIIEQ----------ADVPVIVDA-GIGTP 187 (250)
T ss_pred -----HHHHH-------cCCCEe---CCCCcCCCCCCCCCCHHH----HHHHHHh----------cCCeEEEeC-CCCCH
Confidence 22322 234445 99 569999876 4444 3444442 248999999 88 58
Q ss_pred hhHHHHHHccc
Q 026522 217 SHVLVHLLLSF 227 (237)
Q Consensus 217 ~Na~~~~~~~~ 227 (237)
+-+...+.+|+
T Consensus 188 eda~~AmelGA 198 (250)
T PRK00208 188 SDAAQAMELGA 198 (250)
T ss_pred HHHHHHHHcCC
Confidence 99999888764
No 31
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.54 E-value=2.5 Score=35.70 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCceEE--EcCccc--cHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCCe
Q 026522 16 TPEEVKKIVSVLNEGQVPSSDVVEVV--VSPPFV--FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPW 91 (237)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~v~--i~Pp~~--~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~ 91 (237)
+.+++.++++.+ ... -.-+++. ...++. .+..+++.. ++..+++ |++..+.|.| .++++.++|+++
T Consensus 10 ~~~~a~~~~~~l-~~~---v~~iev~~~l~~~~g~~~i~~l~~~~-~~~~i~~-d~k~~d~~~~----~~~~~~~~Gad~ 79 (206)
T TIGR03128 10 DIEEALELAEKV-ADY---VDIIEIGTPLIKNEGIEAVKEMKEAF-PDRKVLA-DLKTMDAGEY----EAEQAFAAGADI 79 (206)
T ss_pred CHHHHHHHHHHc-ccC---eeEEEeCCHHHHHhCHHHHHHHHHHC-CCCEEEE-EEeeccchHH----HHHHHHHcCCCE
Confidence 567888888776 311 1224442 222222 122222221 3455666 6666666654 689999999999
Q ss_pred EEecccccccccccCHHHHHHHHHHHHHCCCeEEEE-eCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEccccc
Q 026522 92 VILGHSERRLILNELNEFVGDKVAYALSQGLKVIAC-VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWA 170 (237)
Q Consensus 92 viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvC-iGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWA 170 (237)
+.+ |.|. +...+.+=++.+.+.|+.+++= .+-. | ..++++...+ ..-.+|...|...
T Consensus 80 i~v-h~~~------~~~~~~~~i~~~~~~g~~~~~~~~~~~--------t---~~~~~~~~~~----~g~d~v~~~pg~~ 137 (206)
T TIGR03128 80 VTV-LGVA------DDATIKGAVKAAKKHGKEVQVDLINVK--------D---KVKRAKELKE----LGADYIGVHTGLD 137 (206)
T ss_pred EEE-eccC------CHHHHHHHHHHHHHcCCEEEEEecCCC--------C---hHHHHHHHHH----cCCCEEEEcCCcC
Confidence 974 5553 1123344447788899999863 2311 0 1122323332 1223567777332
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522 171 IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 171 IGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~ 230 (237)
-.+-.+..++.+.+ +++.+ . ..+|.-=| +++++|+.+++..|.-++
T Consensus 138 ~~~~~~~~~~~i~~----l~~~~----~-----~~~i~v~G-GI~~~n~~~~~~~Ga~~v 183 (206)
T TIGR03128 138 EQAKGQNPFEDLQT----ILKLV----K-----EARVAVAG-GINLDTIPDVIKLGPDIV 183 (206)
T ss_pred cccCCCCCHHHHHH----HHHhc----C-----CCcEEEEC-CcCHHHHHHHHHcCCCEE
Confidence 11111223333332 22221 1 24565235 589999999887665543
No 32
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=93.71 E-value=1 Score=39.42 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=71.2
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~ 160 (237)
.+.+.+.|++++.+ |.|- ...+.+=++...++|+++-+-+.=.. . .+.+..+++.++ .=
T Consensus 74 i~~~~~~gad~i~~-H~Ea-------~~~~~~~l~~ik~~g~k~GlalnP~T-------p----~~~i~~~l~~~D--~v 132 (220)
T PRK08883 74 IPDFAKAGASMITF-HVEA-------SEHVDRTLQLIKEHGCQAGVVLNPAT-------P----LHHLEYIMDKVD--LI 132 (220)
T ss_pred HHHHHHhCCCEEEE-cccC-------cccHHHHHHHHHHcCCcEEEEeCCCC-------C----HHHHHHHHHhCC--eE
Confidence 37889999997755 7773 22344455778889999988776421 1 123445555432 12
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccccc
Q 026522 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGC 229 (237)
Q Consensus 161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~ 229 (237)
++..-+|-.. |+..-|.... -++.+|+.+.+. +.+++|.-.| ++|++|+..+..-|.-.
T Consensus 133 lvMtV~PGfg---Gq~fi~~~le-kI~~l~~~~~~~-----~~~~~I~vdG-GI~~eni~~l~~aGAd~ 191 (220)
T PRK08883 133 LLMSVNPGFG---GQSFIPHTLD-KLRAVRKMIDES-----GRDIRLEIDG-GVKVDNIREIAEAGADM 191 (220)
T ss_pred EEEEecCCCC---CceecHhHHH-HHHHHHHHHHhc-----CCCeeEEEEC-CCCHHHHHHHHHcCCCE
Confidence 4567899553 4333333322 233444444321 2358898999 99999999987766543
No 33
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=93.04 E-value=2.7 Score=35.19 Aligned_cols=163 Identities=15% Similarity=0.151 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCceEEEcCcc------ccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCC
Q 026522 15 GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPF------VFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLE 88 (237)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~------~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G 88 (237)
.+.+++.++++.+.+. . .-+++ -.|+ ..+..+.+.. +++.+.+--... +.+ ..-++.+.++|
T Consensus 10 ~~~~~~~~~~~~l~~~-i---~~iei--g~~~~~~~g~~~i~~i~~~~-~~~~i~~~~~v~-~~~----~~~~~~~~~aG 77 (202)
T cd04726 10 LDLEEALELAKKVPDG-V---DIIEA--GTPLIKSEGMEAVRALREAF-PDKIIVADLKTA-DAG----ALEAEMAFKAG 77 (202)
T ss_pred CCHHHHHHHHHHhhhc-C---CEEEc--CCHHHHHhCHHHHHHHHHHC-CCCEEEEEEEec-ccc----HHHHHHHHhcC
Confidence 4678888888887664 2 23454 2333 2233333321 355564432211 111 23458899999
Q ss_pred CCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEE-EeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEc
Q 026522 89 IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVGE-TLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYE 166 (237)
Q Consensus 89 ~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiGE-t~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYE 166 (237)
++++++ |.|- +.+....=++.+.++|+.+++ |++= |.+++ ++ .+. ..-.++.+.
T Consensus 78 ad~i~~-h~~~------~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~------------~~-~~~----~~~d~v~~~ 133 (202)
T cd04726 78 ADIVTV-LGAA------PLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKR------------AK-LLK----LGVDIVILH 133 (202)
T ss_pred CCEEEE-EeeC------CHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHH------------HH-HHH----CCCCEEEEc
Confidence 999987 2222 111223334677789999986 4442 22221 11 222 112245556
Q ss_pred ccccccCC-CCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccc
Q 026522 167 PVWAIGTG-KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFG 228 (237)
Q Consensus 167 PvWAIGtG-~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~ 228 (237)
|.---++. .....+.+ +.+|+. .++||.-+| +|+++|+.+++..|.-
T Consensus 134 ~~~~~~~~~~~~~~~~i----~~~~~~----------~~~~i~~~G-GI~~~~i~~~~~~Gad 181 (202)
T cd04726 134 RGIDAQAAGGWWPEDDL----KKVKKL----------LGVKVAVAG-GITPDTLPEFKKAGAD 181 (202)
T ss_pred CcccccccCCCCCHHHH----HHHHhh----------cCCCEEEEC-CcCHHHHHHHHhcCCC
Confidence 64322222 12223332 223321 248999999 9999999998877643
No 34
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.26 E-value=2.4 Score=36.50 Aligned_cols=107 Identities=19% Similarity=0.146 Sum_probs=60.7
Q ss_pred cCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 026522 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW 158 (237)
Q Consensus 79 iSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~ 158 (237)
-..+.++++|++.+.++.. ++.+.+ +.+.+.++.+++-+-.. ++++.+.+ .
T Consensus 71 ~~~~~~~~~g~d~v~l~~~-------~~~~~~----~~~~~~~i~~i~~v~~~--------------~~~~~~~~----~ 121 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFG-------PPAEVV----ERLKAAGIKVIPTVTSV--------------EEARKAEA----A 121 (236)
T ss_pred HHHHHHHhCCCCEEEEcCC-------CCHHHH----HHHHHcCCEEEEeCCCH--------------HHHHHHHH----c
Confidence 3578889999999999876 233322 44556788877755321 12222222 1
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCCh-hhHHHHHHcc
Q 026522 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINV-SHVLVHLLLS 226 (237)
Q Consensus 159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~-~Na~~~~~~~ 226 (237)
....|.+.+.-.-|++.+.+.. ..+..+.+|+.. ++||+-+| ++++ +|+.+++..|
T Consensus 122 gad~i~~~~~~~~G~~~~~~~~-~~~~i~~i~~~~----------~~Pvi~~G-GI~~~~~v~~~l~~G 178 (236)
T cd04730 122 GADALVAQGAEAGGHRGTFDIG-TFALVPEVRDAV----------DIPVIAAG-GIADGRGIAAALALG 178 (236)
T ss_pred CCCEEEEeCcCCCCCCCccccC-HHHHHHHHHHHh----------CCCEEEEC-CCCCHHHHHHHHHcC
Confidence 2234566665332333222111 122333333321 47999999 9987 9999988743
No 35
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=92.21 E-value=0.13 Score=46.29 Aligned_cols=142 Identities=10% Similarity=0.035 Sum_probs=73.3
Q ss_pred CcEEeeeccccccCcCcccccCHHHHHhCCCCeEEe----cccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHH
Q 026522 59 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVIL----GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQ 134 (237)
Q Consensus 59 ~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viI----GHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~ 134 (237)
.+.+|-|=+.. +. .-+...-+..|++|+=+ |+.-.-.=+=|.+.-=..+.++.+...+ -....-...
T Consensus 79 ~~p~GvnvL~n-d~-----~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v---~i~adV~~k 149 (257)
T TIGR00259 79 SIPLGINVLRN-DA-----VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEV---KILADIVVK 149 (257)
T ss_pred CCCeeeeeecC-CC-----HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCc---EEEeceeec
Confidence 45677654432 21 22456667888888655 4443333333444333345555555333 333332221
Q ss_pred HhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC
Q 026522 135 REAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI 214 (237)
Q Consensus 135 r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV 214 (237)
...--...-+.+.++.....- ..+-+++ = --|||.+++++.++. +|+. ...+|+|-|| +|
T Consensus 150 h~~~l~~~~~~e~a~~~~~~~-~aDaviv-t----G~~TG~~~d~~~l~~----vr~~---------~~~~Pvllgg-Gv 209 (257)
T TIGR00259 150 HAVHLGNRDLESIALDTVERG-LADAVIL-S----GKTTGTEVDLELLKL----AKET---------VKDTPVLAGS-GV 209 (257)
T ss_pred ccCcCCCCCHHHHHHHHHHhc-CCCEEEE-C----cCCCCCCCCHHHHHH----HHhc---------cCCCeEEEEC-CC
Confidence 111000111333344333210 0123333 1 225899999988863 3431 2247999999 99
Q ss_pred ChhhHHHHHHccccc
Q 026522 215 NVSHVLVHLLLSFGC 229 (237)
Q Consensus 215 ~~~Na~~~~~~~~~~ 229 (237)
+|+|+.+++....|.
T Consensus 210 t~eNv~e~l~~adGv 224 (257)
T TIGR00259 210 NLENVEELLSIADGV 224 (257)
T ss_pred CHHHHHHHHhhCCEE
Confidence 999999998875554
No 36
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=91.48 E-value=0.19 Score=45.22 Aligned_cols=141 Identities=10% Similarity=0.065 Sum_probs=75.0
Q ss_pred CcEEeeeccccccCcCcccccCHHHHHhCCCCeEE----ecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHH
Q 026522 59 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVI----LGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQ 134 (237)
Q Consensus 59 ~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~vi----IGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~ 134 (237)
.+.+|-|=.. .+ +.-+...-+..|++++= +|+.-...=+-|.+.-=-.+.++.+... ..|++ .-...
T Consensus 80 ~~p~GVnvL~-nd-----~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~-v~ila--DV~~k 150 (254)
T PF03437_consen 80 SVPVGVNVLR-ND-----PKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGAD-VKILA--DVHVK 150 (254)
T ss_pred CCCEEeeeec-CC-----CHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCC-eEEEe--eechh
Confidence 5677866443 11 22244556667787763 4444444444455544445666677777 55553 32211
Q ss_pred HhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC
Q 026522 135 REAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI 214 (237)
Q Consensus 135 r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV 214 (237)
...--...-+.+.++...... ..+-+++ =- -.||.+++++++++ +|+. .. +|||-|+ +|
T Consensus 151 h~~~l~~~~~~~~~~~a~~~~-~aDaviV-tG----~~TG~~~~~~~l~~----vr~~---------~~-~PVlvGS-Gv 209 (254)
T PF03437_consen 151 HSSPLATRDLEEAAKDAVERG-GADAVIV-TG----KATGEPPDPEKLKR----VREA---------VP-VPVLVGS-GV 209 (254)
T ss_pred hcccCCCCCHHHHHHHHHHhc-CCCEEEE-CC----cccCCCCCHHHHHH----HHhc---------CC-CCEEEec-CC
Confidence 111111111233333332211 1122333 11 13688889998764 3442 22 8999999 99
Q ss_pred ChhhHHHHHHccccc
Q 026522 215 NVSHVLVHLLLSFGC 229 (237)
Q Consensus 215 ~~~Na~~~~~~~~~~ 229 (237)
|++|+.++|...=|+
T Consensus 210 t~~Ni~~~l~~ADG~ 224 (254)
T PF03437_consen 210 TPENIAEYLSYADGA 224 (254)
T ss_pred CHHHHHHHHHhCCEE
Confidence 999999998765554
No 37
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=91.31 E-value=1.2 Score=37.14 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=73.3
Q ss_pred cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeE-EEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 026522 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV-IACVGETLEQREAGSTMDVVAAQTKAIAD 153 (237)
Q Consensus 75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~p-IvCiGEt~e~r~~g~~~~vl~~Ql~~~l~ 153 (237)
|.|++....||+.|+++|+|-=+|-..+ .|+.-..-++.|.++||.. ++-..... +..--.+|.+-.++
T Consensus 6 ~qg~~dw~~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~G~Yhf~~~~-------~~~~a~~qA~~f~~ 75 (181)
T PF01183_consen 6 YQGDIDWQKVKAAGIDFVIIKATEGTSY---VDPYFESNIKNAKAAGLPVGAYHFARAT-------NSSDAEAQADYFLN 75 (181)
T ss_dssp GGSS-SHHHHHHTTEEEEEEEEEETTTE---E-TTHHHHHHHHHHTTSEEEEEEE--TT-------THCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHCCCCEEEEEeeeCCCe---ecchHHHHHHHHHHcCCeEEEEEEeccC-------CcccHHHHHHHHHH
Confidence 7899999999999999999988887654 5666777889999999986 44333321 11123466666666
Q ss_pred cc-CC---CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 154 RV-SS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 154 ~i-~~---~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
.+ .. .-+++|-+|-. .....+.++..+.+....+.+.+..|. -++||.+
T Consensus 76 ~~~~~~~~~~~~~lD~E~~----~~~~~~~~~~~~~~~~f~~~~~~~~G~-----~~~iY~~ 128 (181)
T PF01183_consen 76 QVKGGDPGDLPPALDVEDD----KSNNPSKSDNTAWVKAFLDEVEKAAGY-----KPGIYTS 128 (181)
T ss_dssp CTHTSSTSCS-EEEEE-S-----GGCCSSHHHHHHHHHHHHHHHHHHCTS-----EEEEEEE
T ss_pred HhcccCCCcceEEEecccc----ccCCCCHHHHHHHHHHHHHHHHHHhCC-----ceeEeec
Confidence 66 21 23467888843 223345555555444444555444442 4889998
No 38
>PLN02334 ribulose-phosphate 3-epimerase
Probab=90.78 E-value=7.7 Score=33.71 Aligned_cols=115 Identities=13% Similarity=0.030 Sum_probs=65.1
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeC-CcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVG-ETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiG-Et~e~r~~g~~~~vl~~Ql~~~l~~i~~~~ 159 (237)
.+.+.+.|+++|.+ |-|. -.+......++.+++.|+.+-+=+. .|.. ++++..++. ..
T Consensus 81 ~~~~~~~gad~v~v-H~~q-----~~~d~~~~~~~~i~~~g~~iGls~~~~t~~------------~~~~~~~~~---~~ 139 (229)
T PLN02334 81 VPDFAKAGASIFTF-HIEQ-----ASTIHLHRLIQQIKSAGMKAGVVLNPGTPV------------EAVEPVVEK---GL 139 (229)
T ss_pred HHHHHHcCCCEEEE-eecc-----ccchhHHHHHHHHHHCCCeEEEEECCCCCH------------HHHHHHHhc---cC
Confidence 56779999999944 2221 0123466777888889986544443 2322 223334332 00
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccc
Q 026522 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSF 227 (237)
Q Consensus 160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~ 227 (237)
..+|.+=|++.-.||....+..... .+.+|+.+ .+++|.-=| +++++|+.++...|.
T Consensus 140 ~Dyi~~~~v~pg~~~~~~~~~~~~~-i~~~~~~~---------~~~~I~a~G-GI~~e~i~~l~~aGa 196 (229)
T PLN02334 140 VDMVLVMSVEPGFGGQSFIPSMMDK-VRALRKKY---------PELDIEVDG-GVGPSTIDKAAEAGA 196 (229)
T ss_pred CCEEEEEEEecCCCccccCHHHHHH-HHHHHHhC---------CCCcEEEeC-CCCHHHHHHHHHcCC
Confidence 2345556777644554443433333 33344431 135787777 799999999887764
No 39
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=90.30 E-value=4.5 Score=36.48 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=66.0
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcH-HHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL-EQREAGSTMDVVAAQTKAIADRVSSWS 159 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~-e~r~~g~~~~vl~~Ql~~~l~~i~~~~ 159 (237)
.+.+++.|++.+|+= =+- +.|.++.. +.+.++|+.+|+=|--+. ++| ++.+.+. .+
T Consensus 112 ~~~~~~aGvdgviip-DLP---~ee~~~~~----~~~~~~gi~~I~lv~PtT~~er------------i~~i~~~---a~ 168 (263)
T CHL00200 112 IKKISQAGVKGLIIP-DLP---YEESDYLI----SVCNLYNIELILLIAPTSSKSR------------IQKIARA---AP 168 (263)
T ss_pred HHHHHHcCCeEEEec-CCC---HHHHHHHH----HHHHHcCCCEEEEECCCCCHHH------------HHHHHHh---CC
Confidence 567789999999872 111 33444444 788899999988776552 222 3333321 12
Q ss_pred CeE--EEEccccccc-CCCC-CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCC-hhhHHHHHHc
Q 026522 160 NIV--LAYEPVWAIG-TGKV-ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN-VSHVLVHLLL 225 (237)
Q Consensus 160 ~ii--IAYEPvWAIG-tG~~-as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~-~~Na~~~~~~ 225 (237)
.++ ++. | | ||.. .-++++.+..+.+|+. .+.||..|+ +|+ |++++++...
T Consensus 169 gFIY~vS~-~----GvTG~~~~~~~~~~~~i~~ir~~----------t~~Pi~vGF-GI~~~e~~~~~~~~ 223 (263)
T CHL00200 169 GCIYLVST-T----GVTGLKTELDKKLKKLIETIKKM----------TNKPIILGF-GISTSEQIKQIKGW 223 (263)
T ss_pred CcEEEEcC-C----CCCCCCccccHHHHHHHHHHHHh----------cCCCEEEEC-CcCCHHHHHHHHhc
Confidence 222 232 2 3 4443 3457777777777763 137999999 999 9999996655
No 40
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=90.09 E-value=3.7 Score=36.92 Aligned_cols=146 Identities=16% Similarity=0.204 Sum_probs=80.3
Q ss_pred EEcCccccHHHHHHhcCCCcEEeeecccccc-CcC--cccc------cCHHHHHhCCCCeEEecccccccccccCHHHHH
Q 026522 41 VVSPPFVFLGLVKSSLRPGFHVAAQNCWVKK-GGA--FTGE------ISAEMLVNLEIPWVILGHSERRLILNELNEFVG 111 (237)
Q Consensus 41 ~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~-~GA--~TGe------iSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~ 111 (237)
.+-|++-.+..+.+.+. +++- |=... .|- ||-+ -...+++++|++.+.+|=--. -++-|....
T Consensus 35 GlTPS~g~i~~~~~~~~--ipv~---vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~---dg~vD~~~~ 106 (248)
T PRK11572 35 GLTPSLGVLKSVRERVT--IPVH---PIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDV---DGHVDMPRM 106 (248)
T ss_pred CcCCCHHHHHHHHHhcC--CCeE---EEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECC---CCCcCHHHH
Confidence 46788888888776542 2211 00011 122 2222 245778889999999997643 345666666
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc-C-CCCCeEEEEcccccccCCCCCCHHHHHHHHHHH
Q 026522 112 DKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV-S-SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFEL 189 (237)
Q Consensus 112 ~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i-~-~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~I 189 (237)
+++..+. .++...+ -+..|.+.+|.++ ++.+ + ..+++. =+|..++ +.+-...|
T Consensus 107 ~~Li~~a-~~~~vTF-----------HRAfD~~~d~~~a-l~~l~~lG~~rIL---------TSGg~~~---a~~g~~~L 161 (248)
T PRK11572 107 RKIMAAA-GPLAVTF-----------HRAFDMCANPLNA-LKQLADLGVARIL---------TSGQQQD---AEQGLSLI 161 (248)
T ss_pred HHHHHHh-cCCceEE-----------echhhccCCHHHH-HHHHHHcCCCEEE---------CCCCCCC---HHHHHHHH
Confidence 6665554 4665544 1333444334332 2211 1 123321 1355555 44455666
Q ss_pred HHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 190 RKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 190 R~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
++..... +..+ |+-|| +|+++|+.++...|
T Consensus 162 ~~lv~~a-----~~~~-Im~Gg-GV~~~Nv~~l~~tG 191 (248)
T PRK11572 162 MELIAAS-----DGPI-IMAGA-GVRLSNLHKFLDAG 191 (248)
T ss_pred HHHHHhc-----CCCE-EEeCC-CCCHHHHHHHHHcC
Confidence 6655432 1223 99999 99999999986544
No 41
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=89.72 E-value=0.39 Score=43.10 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522 173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 173 tG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~ 230 (237)
||.++++++++.+ ++. ..+|+|-|- +|+++|+.++|.+.=||-
T Consensus 188 TG~~~d~~el~~a----~~~----------~~~pvlvGS-Gv~~eN~~~~l~~adG~I 230 (263)
T COG0434 188 TGSPPDLEELKLA----KEA----------VDTPVLVGS-GVNPENIEELLKIADGVI 230 (263)
T ss_pred CCCCCCHHHHHHH----Hhc----------cCCCEEEec-CCCHHHHHHHHHHcCceE
Confidence 6778888887543 321 228999999 999999999999998885
No 42
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=89.50 E-value=6.2 Score=37.71 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=68.9
Q ss_pred cccCcCcccccCHHHHHhCCCCeEEecccccccccccCH-HHHHHHHHHHHHCCCeEEEEe-C-CcHHHHhcCCcHHHHH
Q 026522 69 VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELN-EFVGDKVAYALSQGLKVIACV-G-ETLEQREAGSTMDVVA 145 (237)
Q Consensus 69 ~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd-~~V~~Kv~~al~~gl~pIvCi-G-Et~e~r~~g~~~~vl~ 145 (237)
..+.|.|. .+++.++|++++.+ +.|.. +.+.+=++.+.+.|+.+++|. + ++..+
T Consensus 235 ~~Di~~~v----v~~~a~aGAD~vTV--------H~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e----------- 291 (391)
T PRK13307 235 TLDTGNLE----ARMAADATADAVVI--------SGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVK----------- 291 (391)
T ss_pred ccChhhHH----HHHHHhcCCCEEEE--------eccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHH-----------
Confidence 34666665 88999999999977 33333 468888899999999999973 2 23222
Q ss_pred HHHHHHHhccCCCCCeEEE--EcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHH
Q 026522 146 AQTKAIADRVSSWSNIVLA--YEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHL 223 (237)
Q Consensus 146 ~Ql~~~l~~i~~~~~iiIA--YEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~ 223 (237)
.++.++..+ +-+.+- ++|- +.....+ -++.+|+. ..+++|...| +++++|+.+++
T Consensus 292 -~i~~l~~~v---D~Vllht~vdp~-----~~~~~~~----kI~~ikk~---------~~~~~I~VdG-GI~~eti~~l~ 348 (391)
T PRK13307 292 -LLESLKVKP---DVVELHRGIDEE-----GTEHAWG----NIKEIKKA---------GGKILVAVAG-GVRVENVEEAL 348 (391)
T ss_pred -HHHHhhCCC---CEEEEccccCCC-----cccchHH----HHHHHHHh---------CCCCcEEEEC-CcCHHHHHHHH
Confidence 122222221 112222 4442 1111112 22334432 2247899999 99999999988
Q ss_pred Hccccc
Q 026522 224 LLSFGC 229 (237)
Q Consensus 224 ~~~~~~ 229 (237)
..|.-+
T Consensus 349 ~aGADi 354 (391)
T PRK13307 349 KAGADI 354 (391)
T ss_pred HcCCCE
Confidence 766543
No 43
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=88.83 E-value=5 Score=38.26 Aligned_cols=114 Identities=13% Similarity=0.110 Sum_probs=65.8
Q ss_pred cccCHHHHHhCCCCeEEe-cccccccccccCHHHHHHHHHHHHHCCCeEEE-EeC-CcHHHHhcCCcHHHHHHHHHHHHh
Q 026522 77 GEISAEMLVNLEIPWVIL-GHSERRLILNELNEFVGDKVAYALSQGLKVIA-CVG-ETLEQREAGSTMDVVAAQTKAIAD 153 (237)
Q Consensus 77 GeiSa~mLkd~G~~~viI-GHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv-CiG-Et~e~r~~g~~~~vl~~Ql~~~l~ 153 (237)
|++..+++.++|++++.+ |=+ ++..+.+=++.+.+.|+.+++ |+. ++..++ ++.+.+
T Consensus 70 g~~~v~~a~~aGAdgV~v~g~~--------~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~------------~~~a~~ 129 (430)
T PRK07028 70 GAIEVEMAAKAGADIVCILGLA--------DDSTIEDAVRAARKYGVRLMADLINVPDPVKR------------AVELEE 129 (430)
T ss_pred hHHHHHHHHHcCCCEEEEecCC--------ChHHHHHHHHHHHHcCCEEEEEecCCCCHHHH------------HHHHHh
Confidence 566999999999999885 311 122344445677889999887 655 442221 222322
Q ss_pred ccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccccc
Q 026522 154 RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGC 229 (237)
Q Consensus 154 ~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~ 229 (237)
..-.+|...|... +.+..+.. ...+|+.... .++||+-.| +++++|+.+++.-|.-+
T Consensus 130 ----~GaD~I~~~pg~~---~~~~~~~~----~~~l~~l~~~-------~~iPI~a~G-GI~~~n~~~~l~aGAdg 186 (430)
T PRK07028 130 ----LGVDYINVHVGID---QQMLGKDP----LELLKEVSEE-------VSIPIAVAG-GLDAETAAKAVAAGADI 186 (430)
T ss_pred ----cCCCEEEEEeccc---hhhcCCCh----HHHHHHHHhh-------CCCcEEEEC-CCCHHHHHHHHHcCCCE
Confidence 1122345556432 21211211 2344443221 138999999 99999999988776543
No 44
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=88.59 E-value=6.4 Score=33.06 Aligned_cols=113 Identities=17% Similarity=0.066 Sum_probs=62.0
Q ss_pred CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS 159 (237)
Q Consensus 80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~ 159 (237)
..+++.++|++++.+ |++-. .. ..++.....+..+-+-+. |.++ +..... ..
T Consensus 73 ~~~~a~~~gad~vh~-~~~~~-----~~----~~~~~~~~~~~~~g~~~~-t~~e-------------~~~a~~----~g 124 (212)
T PRK00043 73 RVDLALAVGADGVHL-GQDDL-----PV----ADARALLGPDAIIGLSTH-TLEE-------------AAAALA----AG 124 (212)
T ss_pred hHHHHHHcCCCEEec-CcccC-----CH----HHHHHHcCCCCEEEEeCC-CHHH-------------HHHHhH----cC
Confidence 468999999999877 44321 11 123444456666655443 3221 111111 12
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~ 230 (237)
-.+|..-|+..-++.....+..--+..+.+++.+ +++||+--| +++++|+.+++..|+-.+
T Consensus 125 aD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~v~a~G-GI~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 125 ADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV---------GDIPIVAIG-GITPENAPEVLEAGADGV 185 (212)
T ss_pred CCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc---------CCCCEEEEC-CcCHHHHHHHHHcCCCEE
Confidence 3355666777766544332211011122233221 137899999 999999999998876554
No 45
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=87.85 E-value=4.9 Score=35.90 Aligned_cols=145 Identities=16% Similarity=0.188 Sum_probs=84.8
Q ss_pred EEcCccccHHHHHHhcCCCcEEeeeccccccCcCc---ccccC-----HHHHHhCCCCeEEecccccccccccCHHHHHH
Q 026522 41 VVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAF---TGEIS-----AEMLVNLEIPWVILGHSERRLILNELNEFVGD 112 (237)
Q Consensus 41 ~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~---TGeiS-----a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~ 112 (237)
.+-|++-.+..+.+.. ++++-. +=-.-.|-| ..|++ -.+.+++|++.|.+|-+-- -++-|...-+
T Consensus 35 G~TPSyG~~k~a~~~~--~ipv~~--MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~---dg~iD~~~le 107 (241)
T COG3142 35 GLTPSYGVIKEAVELS--KIPVYV--MIRPRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTA---DGNIDMPRLE 107 (241)
T ss_pred CCCCCHHHHHHHHhhc--CCceEE--EEecCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecC---CCccCHHHHH
Confidence 4678888888877653 333221 000112222 23333 2456788999999998743 5667766666
Q ss_pred HHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC-CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522 113 KVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS-SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 113 Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~-~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~ 191 (237)
|+..+. .||...+ -+..|.+.+|..++-.-++ ...++. =+|.++|+.+- ...|++
T Consensus 108 ~Li~aA-~gL~vTF-----------HrAFD~~~d~~~ale~li~~Gv~RIL---------TsGg~~sa~eg---~~~l~~ 163 (241)
T COG3142 108 KLIEAA-GGLGVTF-----------HRAFDECPDPLEALEQLIELGVERIL---------TSGGKASALEG---LDLLKR 163 (241)
T ss_pred HHHHHc-cCCceee-----------ehhhhhcCCHHHHHHHHHHCCCcEEe---------cCCCcCchhhh---HHHHHH
Confidence 666554 3665443 1445556555544332222 133432 14555555543 456666
Q ss_pred HHHhcCCccccCcccEEEcCCCCChhhHHHH
Q 026522 192 WLLANTSPEIAAATRIIYGGISINVSHVLVH 222 (237)
Q Consensus 192 ~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~ 222 (237)
++.. .+..+.|+-|| +|+++|++++
T Consensus 164 li~~-----a~gri~Im~Ga-GV~~~N~~~l 188 (241)
T COG3142 164 LIEQ-----AKGRIIIMAGA-GVRAENIAEL 188 (241)
T ss_pred HHHH-----hcCCEEEEeCC-CCCHHHHHHH
Confidence 6643 25679999999 9999999998
No 46
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=87.48 E-value=16 Score=30.59 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=71.7
Q ss_pred CcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE---EEeCCcHHHHhcCCcHHHHHHHHHH
Q 026522 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI---ACVGETLEQREAGSTMDVVAAQTKA 150 (237)
Q Consensus 74 A~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI---vCiGEt~e~r~~g~~~~vl~~Ql~~ 150 (237)
.|.|.+....||+.|+++|||-=+|...+ .|.....-++.|.++||..= +.-+.+ . -.+|.+-
T Consensus 7 ~~q~~id~~~~k~~gi~fviiKateG~~y---~D~~~~~~~~~a~~aGl~~G~Yhy~~~~~-------~----a~~qA~~ 72 (184)
T cd06525 7 NWQGNINFNAVKDSGVEVVYIKATEGTTF---VDSYFNENYNGAKAAGLKVGFYHFLVGTS-------N----PEEQAEN 72 (184)
T ss_pred CCCCCCCHHHHHhCCCeEEEEEecCCCcc---cCHhHHHHHHHHHHCCCceEEEEEeeCCC-------C----HHHHHHH
Confidence 47889999999999999999999987655 47788999999999999642 111111 1 1345555
Q ss_pred HHhccCC---CCCeEEEEcccccccCCCCCCHHHH-HHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 151 IADRVSS---WSNIVLAYEPVWAIGTGKVATPAQA-QEVHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 151 ~l~~i~~---~~~iiIAYEPvWAIGtG~~as~e~i-~~~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
.++.+.. .-++++-+|.. ++. +.... ..+.++++ .+++.+| ..++||-+
T Consensus 73 f~~~~~~~~~~~~~~lD~E~~----~~~--~~~~~~~~~~~f~~-~v~~~~G-----~~~~iY~~ 125 (184)
T cd06525 73 FYNTIKGKKMDLKPALDVEVN----FGL--SKDELNDYVLRFIE-EFEKLSG-----LKVGIYTY 125 (184)
T ss_pred HHHhccccCCCCCeEEEEecC----CCC--CHHHHHHHHHHHHH-HHHHHHC-----CCeEEEec
Confidence 5554432 23678889973 222 33443 33334443 3443333 25899998
No 47
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=87.20 E-value=17 Score=30.81 Aligned_cols=117 Identities=18% Similarity=0.015 Sum_probs=70.6
Q ss_pred cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE----EEeCCcHHHHhcCCcHHHHHHHHHH
Q 026522 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI----ACVGETLEQREAGSTMDVVAAQTKA 150 (237)
Q Consensus 75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI----vCiGEt~e~r~~g~~~~vl~~Ql~~ 150 (237)
|.|.|....+|..|+++|||==+|--.+ .|.....-++.|.++||.+= .|.+.+... +|.+-
T Consensus 9 ~qg~idw~~vk~~g~~fviiKateG~~~---~D~~~~~n~~~A~~aGl~~G~Yhf~~~~~~~a~-----------~qA~~ 74 (199)
T cd06412 9 HQGSVDWSGAAANGARFAYVKATEGTSY---TNPRFSSQYNGAYNAGLIRGAYHFALPDQSSGA-----------AQADY 74 (199)
T ss_pred CCCCCCHHHHHhCCCeEEEEEEecCCCc---cChhHHHHHHHHHHcCCceEEEEEeecCCCCHH-----------HHHHH
Confidence 7789999999999999999988886544 57778888999999999543 444432111 23433
Q ss_pred HHhccCC------CCCeEEEEcccccccCCCCCCHHHHHH-HHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 151 IADRVSS------WSNIVLAYEPVWAIGTGKVATPAQAQE-VHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 151 ~l~~i~~------~~~iiIAYEPvWAIGtG~~as~e~i~~-~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
.++.+.. .-++++-+|-----++....+..++.. +.+|+++ +.+..| ..|+||-+
T Consensus 75 fi~~~~~~~~~~~~lp~~lD~E~~~~~~~~~~~~~~~~~~~~~~f~~~-v~~~~G-----~~~~iY~~ 136 (199)
T cd06412 75 FLDHGGGWSPDGRTLPGVLDLEYNPYGATCYGLSPAQMVSWIKDFSDT-YKARTG-----RDPVIYTT 136 (199)
T ss_pred HHHHcccccCCCCCCCeEEEEecCCCCCccCCCCHHHHHHHHHHHHHH-HHHHHC-----CCcEEEec
Confidence 4433311 224678888632211112234555433 3344433 333333 35899998
No 48
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=86.88 E-value=9.3 Score=33.45 Aligned_cols=130 Identities=17% Similarity=0.149 Sum_probs=79.4
Q ss_pred CcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcC
Q 026522 59 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAG 138 (237)
Q Consensus 59 ~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g 138 (237)
++.+ |+|.. ..|.+--.+.+.++|++++.+ |.|- ++.++.+-++.+.+.|+.+-+.+.=..
T Consensus 65 ~~~l---DvHLm---~~~p~~~i~~~~~~Gad~itv-H~ea------~~~~~~~~l~~ik~~G~~~gval~p~t------ 125 (228)
T PTZ00170 65 NTFL---DCHLM---VSNPEKWVDDFAKAGASQFTF-HIEA------TEDDPKAVARKIREAGMKVGVAIKPKT------ 125 (228)
T ss_pred CCCE---EEEEC---CCCHHHHHHHHHHcCCCEEEE-eccC------CchHHHHHHHHHHHCCCeEEEEECCCC------
Confidence 4555 88877 345556669999999999988 5552 223366666788889988777665211
Q ss_pred CcHHHHHHHHHHHH--hccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCCh
Q 026522 139 STMDVVAAQTKAIA--DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINV 216 (237)
Q Consensus 139 ~~~~vl~~Ql~~~l--~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~ 216 (237)
. .++++..+ ..++. =++.+.||-.+ |....++-..++ +.+|+. ++ .+.|.--| ++++
T Consensus 126 -~----~e~l~~~l~~~~vD~--Vl~m~v~pG~~---gq~~~~~~~~ki-~~~~~~----~~-----~~~I~VdG-GI~~ 184 (228)
T PTZ00170 126 -P----VEVLFPLIDTDLVDM--VLVMTVEPGFG---GQSFMHDMMPKV-RELRKR----YP-----HLNIQVDG-GINL 184 (228)
T ss_pred -C----HHHHHHHHccchhhh--HHhhhcccCCC---CcEecHHHHHHH-HHHHHh----cc-----cCeEEECC-CCCH
Confidence 1 12333333 21111 12467888553 566666555543 233442 21 25688888 8999
Q ss_pred hhHHHHHHcccc
Q 026522 217 SHVLVHLLLSFG 228 (237)
Q Consensus 217 ~Na~~~~~~~~~ 228 (237)
+|+.++..-|.-
T Consensus 185 ~ti~~~~~aGad 196 (228)
T PTZ00170 185 ETIDIAADAGAN 196 (228)
T ss_pred HHHHHHHHcCCC
Confidence 999998776643
No 49
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=86.50 E-value=13 Score=33.29 Aligned_cols=136 Identities=10% Similarity=0.051 Sum_probs=78.5
Q ss_pred cccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE
Q 026522 46 FVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI 125 (237)
Q Consensus 46 ~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI 125 (237)
+-+|..+.+.. ++.|-..|. .|=+.-....+++|++.|++.-+-++ ++.+..=++.|.+.|+.++
T Consensus 100 ~~~l~~v~~~v--~iPvl~kdf-------i~~~~qi~~a~~~GAD~VlLi~~~l~------~~~l~~li~~a~~lGl~~l 164 (260)
T PRK00278 100 LEYLRAARAAV--SLPVLRKDF-------IIDPYQIYEARAAGADAILLIVAALD------DEQLKELLDYAHSLGLDVL 164 (260)
T ss_pred HHHHHHHHHhc--CCCEEeeee-------cCCHHHHHHHHHcCCCEEEEEeccCC------HHHHHHHHHHHHHcCCeEE
Confidence 44455555543 444444552 22223477889999999999988753 3566667799999999999
Q ss_pred EEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcc
Q 026522 126 ACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAAT 205 (237)
Q Consensus 126 vCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i 205 (237)
+|+-...| ++.+++ ....+|.|=| +-..|- +++ .+.+.+.++. . ....
T Consensus 165 vevh~~~E--------------~~~A~~----~gadiIgin~-rdl~~~---~~d-~~~~~~l~~~-----~----p~~~ 212 (260)
T PRK00278 165 VEVHDEEE--------------LERALK----LGAPLIGINN-RNLKTF---EVD-LETTERLAPL-----I----PSDR 212 (260)
T ss_pred EEeCCHHH--------------HHHHHH----cCCCEEEECC-CCcccc---cCC-HHHHHHHHHh-----C----CCCC
Confidence 99976532 112222 2334666632 222221 112 2222222221 1 1124
Q ss_pred cEEEcCCCC-ChhhHHHHHHccccc
Q 026522 206 RIIYGGISI-NVSHVLVHLLLSFGC 229 (237)
Q Consensus 206 ~ILYGG~SV-~~~Na~~~~~~~~~~ 229 (237)
+++-.| ++ +|+|+..++..|+-.
T Consensus 213 ~vIaeg-GI~t~ed~~~~~~~Gad~ 236 (260)
T PRK00278 213 LVVSES-GIFTPEDLKRLAKAGADA 236 (260)
T ss_pred EEEEEe-CCCCHHHHHHHHHcCCCE
Confidence 666655 55 799999998887543
No 50
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=86.21 E-value=4.3 Score=35.33 Aligned_cols=144 Identities=16% Similarity=0.272 Sum_probs=68.7
Q ss_pred EEcCccccHHHHHHhcCCCcEEeeeccccccCcC---cccc------cCHHHHHhCCCCeEEecccccccccccCHHHHH
Q 026522 41 VVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGA---FTGE------ISAEMLVNLEIPWVILGHSERRLILNELNEFVG 111 (237)
Q Consensus 41 ~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA---~TGe------iSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~ 111 (237)
.+-||+-.+..+.+.. ++++ +|-..+.|. ||-+ -...+++++|++.+.+|=-.+ =++-|....
T Consensus 34 GlTPS~g~i~~~~~~~--~ipv---~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~---dg~iD~~~~ 105 (201)
T PF03932_consen 34 GLTPSLGLIRQAREAV--DIPV---HVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTE---DGEIDEEAL 105 (201)
T ss_dssp -B---HHHHHHHHHHT--TSEE---EEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BET---TSSB-HHHH
T ss_pred CcCcCHHHHHHHHhhc--CCce---EEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECC---CCCcCHHHH
Confidence 4567777777766543 3322 222223322 3332 245678899999999997654 345777777
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc-C-CCCCeEEEEcccccccCCCCCCH-HHHHHHHHH
Q 026522 112 DKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV-S-SWSNIVLAYEPVWAIGTGKVATP-AQAQEVHFE 188 (237)
Q Consensus 112 ~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i-~-~~~~iiIAYEPvWAIGtG~~as~-e~i~~~~~~ 188 (237)
+++..+.. |+...+ = +..|.+.+|.++ ++.+ . ..+++.= +|...+. +-+ ..
T Consensus 106 ~~Li~~a~-~~~~tF--H---------RAfD~~~d~~~a-l~~L~~lG~~rVLT---------SGg~~~a~~g~----~~ 159 (201)
T PF03932_consen 106 EELIEAAG-GMPVTF--H---------RAFDEVPDPEEA-LEQLIELGFDRVLT---------SGGAPTALEGI----EN 159 (201)
T ss_dssp HHHHHHHT-TSEEEE------------GGGGGSSTHHHH-HHHHHHHT-SEEEE---------STTSSSTTTCH----HH
T ss_pred HHHHHhcC-CCeEEE--e---------CcHHHhCCHHHH-HHHHHhcCCCEEEC---------CCCCCCHHHHH----HH
Confidence 77777754 777665 1 122222222221 1111 0 1223211 2333322 222 23
Q ss_pred HHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 189 LRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 189 IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
+++.+.. .+..+.|+-|| +|+++|+.++..
T Consensus 160 L~~lv~~-----a~~~i~Im~Gg-Gv~~~nv~~l~~ 189 (201)
T PF03932_consen 160 LKELVEQ-----AKGRIEIMPGG-GVRAENVPELVE 189 (201)
T ss_dssp HHHHHHH-----HTTSSEEEEES-S--TTTHHHHHH
T ss_pred HHHHHHH-----cCCCcEEEecC-CCCHHHHHHHHH
Confidence 3443322 13468999999 999999999876
No 51
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=85.63 E-value=21 Score=30.11 Aligned_cols=115 Identities=14% Similarity=0.053 Sum_probs=70.0
Q ss_pred cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeE-E---EEeCCcHHHHhcCCcHHHHHHHHHH
Q 026522 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV-I---ACVGETLEQREAGSTMDVVAAQTKA 150 (237)
Q Consensus 75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~p-I---vCiGEt~e~r~~g~~~~vl~~Ql~~ 150 (237)
|.|.|....||+.|+++|+|==+|...+ .|+.-..-++.|.++||.. + .|-..+ . .+|.+-
T Consensus 11 ~q~~id~~~vk~~gi~fviiKateG~~~---~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~~~-~-----------~~qA~~ 75 (191)
T cd06413 11 HQGDIDWARVRAQGVSFAYIKATEGGDH---VDKRFAENWRGARAAGLPRGAYHFFTFCRS-G-----------AEQAAN 75 (191)
T ss_pred CCCCcCHHHHHhCCCcEEEEEEcCCCCc---cCHHHHHHHHHHHHcCCceEEEEEEecCCC-H-----------HHHHHH
Confidence 7789999999999999999988887654 6677778889999999863 1 221111 1 134444
Q ss_pred HHhccCC---CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 151 IADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 151 ~l~~i~~---~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
.++.+.. .-++++-+|.. -......+..++.+......+.+.+..| ..++||.+
T Consensus 76 f~~~~~~~~~~~~~~lD~E~~--~~~~~~~~~~~~~~~~~~f~~~v~~~~G-----~~~~iY~~ 132 (191)
T cd06413 76 FIRNVPKDPGALPPVVDVEWN--GNSATCPSAEEVLAELQVFLDALEAHYG-----KRPIIYTT 132 (191)
T ss_pred HHHhcCCCCCcCCeEEEEEec--CCCCCCCCHHHHHHHHHHHHHHHHHHHC-----CCeEEEeC
Confidence 4444432 23567888852 1111114555544333333344443333 24799998
No 52
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=84.25 E-value=7.3 Score=33.06 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.7
Q ss_pred cccEEEcCCCCChhhHHHHHHcc
Q 026522 204 ATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 204 ~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
.+|++-.| +++|+|+.+++..+
T Consensus 152 ~~PvilaG-GI~~~Nv~~~i~~~ 173 (203)
T cd00405 152 RKPVILAG-GLTPDNVAEAIRLV 173 (203)
T ss_pred CCCEEEEC-CCChHHHHHHHHhc
Confidence 37999999 99999999998876
No 53
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=80.90 E-value=36 Score=30.20 Aligned_cols=100 Identities=21% Similarity=0.154 Sum_probs=54.4
Q ss_pred HHHHHhCCCCeEEec---cccc-cccc-ccCHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILG---HSER-RLIL-NELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 81 a~mLkd~G~~~viIG---HSER-R~~f-~Etd~~V~~Kv~~al~~gl~p----IvCiGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
.+.||++|++.+.+| +.|- ++.. +.+-+..-+-++.+.++|+.+ |+-.||+.++.. +-+. .
T Consensus 126 l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~---------~~~~-~ 195 (296)
T TIGR00433 126 AKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRI---------GLAL-A 195 (296)
T ss_pred HHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHH---------HHHH-H
Confidence 556778899998775 2221 1122 234455556678889999985 555678765542 1111 1
Q ss_pred HhccCCCCCe-EEEEcccccccCC----CCCCHHHHHHHHHHHHHHH
Q 026522 152 ADRVSSWSNI-VLAYEPVWAIGTG----KVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 152 l~~i~~~~~i-iIAYEPvWAIGtG----~~as~e~i~~~~~~IR~~l 193 (237)
+..+. ...+ +-.+=|. =||. .++++++.-++++..|..+
T Consensus 196 l~~l~-~~~i~l~~l~p~--~gT~l~~~~~~s~~~~~~~ia~~r~~l 239 (296)
T TIGR00433 196 LANLP-PESVPINFLVKI--KGTPLADNKELSADDALKTIALARIIM 239 (296)
T ss_pred HHhCC-CCEEEeeeeEEc--CCCccCCCCCCCHHHHHHHHHHHHHHC
Confidence 11111 1111 1112232 1442 2457778888888888765
No 54
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=79.63 E-value=36 Score=28.60 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCceEEEcCcc--ccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCCeEE
Q 026522 16 TPEEVKKIVSVLNEGQVPSSDVVEVVVSPPF--VFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVI 93 (237)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~--~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~vi 93 (237)
+..++.+.++.+.+.-. .-+++-.--+. ..+..+.+.. ..+.+|+-++...+ .++.+.++|++++.
T Consensus 14 ~~~~~~~~~~~l~~~G~---~~vev~~~~~~~~~~i~~l~~~~-~~~~iGag~v~~~~--------~~~~a~~~Ga~~i~ 81 (190)
T cd00452 14 DAEDALALAEALIEGGI---RAIEITLRTPGALEAIRALRKEF-PEALIGAGTVLTPE--------QADAAIAAGAQFIV 81 (190)
T ss_pred CHHHHHHHHHHHHHCCC---CEEEEeCCChhHHHHHHHHHHHC-CCCEEEEEeCCCHH--------HHHHHHHcCCCEEE
Confidence 56777777777765311 12333322221 1233332222 35888998887544 37889999999998
Q ss_pred ecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEccccccc
Q 026522 94 LGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGE-TLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIG 172 (237)
Q Consensus 94 IGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE-t~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIG 172 (237)
.+++- .+.+ +.+.+.|+..+ +|= |.+ |+...+. ..-.+|.+-|
T Consensus 82 ~p~~~--------~~~~----~~~~~~~~~~i--~gv~t~~-------------e~~~A~~----~Gad~i~~~p----- 125 (190)
T cd00452 82 SPGLD--------PEVV----KAANRAGIPLL--PGVATPT-------------EIMQALE----LGADIVKLFP----- 125 (190)
T ss_pred cCCCC--------HHHH----HHHHHcCCcEE--CCcCCHH-------------HHHHHHH----CCCCEEEEcC-----
Confidence 77653 2233 44555676544 343 222 2323332 2233455545
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522 173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 173 tG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~ 230 (237)
+++. -.+.++.+++. ..++|++-=| +++++|+.+++..|..|.
T Consensus 126 ----~~~~-g~~~~~~l~~~---------~~~~p~~a~G-GI~~~n~~~~~~~G~~~v 168 (190)
T cd00452 126 ----AEAV-GPAYIKALKGP---------FPQVRFMPTG-GVSLDNAAEWLAAGVVAV 168 (190)
T ss_pred ----Cccc-CHHHHHHHHhh---------CCCCeEEEeC-CCCHHHHHHHHHCCCEEE
Confidence 1221 12222333321 1237888888 899999999998876553
No 55
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=79.55 E-value=6.8 Score=34.31 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=69.6
Q ss_pred cCcccccCH---HHHHhCCCCeEEecccccccccc-cCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHH
Q 026522 73 GAFTGEISA---EMLVNLEIPWVILGHSERRLILN-ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT 148 (237)
Q Consensus 73 GA~TGeiSa---~mLkd~G~~~viIGHSERR~~f~-Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql 148 (237)
|=|+.+-.. +.+++.+.++| ++|+ |+.+.+ +.++..+...+...+.+.+..+. +.
T Consensus 57 gVf~n~~~~~i~~i~~~~~ld~V--------QlHG~e~~~~~-~~l~~~~~~~v~kai~v~~~~~~------------~~ 115 (208)
T COG0135 57 GVFVNESIEEILEIAEELGLDAV--------QLHGDEDPEYI-DQLKEELGVPVIKAISVSEEGDL------------EL 115 (208)
T ss_pred EEECCCCHHHHHHHHHhcCCCEE--------EECCCCCHHHH-HHHHhhcCCceEEEEEeCCccch------------hh
Confidence 445555553 77888889888 6676 555544 44555554667778888865220 01
Q ss_pred HHHHhccCCCCCeEE-EEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccc
Q 026522 149 KAIADRVSSWSNIVL-AYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSF 227 (237)
Q Consensus 149 ~~~l~~i~~~~~iiI-AYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~ 227 (237)
.... ......+++ +|-|---=|||++-+-+-+... | ...|++..| ++||+|+.+. |..
T Consensus 116 ~~~~--~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~----~------------~~~~~~LAG-GL~p~NV~~a--i~~ 174 (208)
T COG0135 116 AARE--EGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL----R------------LSKPVMLAG-GLNPDNVAEA--IAL 174 (208)
T ss_pred hhhc--cCCccEEEEcCCCCCCCCCCCcEECHHHhccc----c------------ccCCEEEEC-CCCHHHHHHH--HHh
Confidence 1111 111223333 4544445689998776655432 1 125799999 9999999994 445
Q ss_pred ccchh
Q 026522 228 GCFYN 232 (237)
Q Consensus 228 ~~~~~ 232 (237)
+|.+.
T Consensus 175 ~~p~g 179 (208)
T COG0135 175 GPPYG 179 (208)
T ss_pred cCCce
Confidence 55443
No 56
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=79.46 E-value=32 Score=30.50 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=72.8
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCC--eEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL--KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW 158 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl--~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~ 158 (237)
.+.+.++|++++.+ |.|- ...+.+=++...++|+ ++=+.+.=. .. .+++...++.++
T Consensus 84 i~~~~~aGad~It~-H~Ea-------~~~~~~~l~~Ik~~g~~~kaGlalnP~-------Tp----~~~i~~~l~~vD-- 142 (228)
T PRK08091 84 AKACVAAGADIVTL-QVEQ-------THDLALTIEWLAKQKTTVLIGLCLCPE-------TP----ISLLEPYLDQID-- 142 (228)
T ss_pred HHHHHHhCCCEEEE-cccC-------cccHHHHHHHHHHCCCCceEEEEECCC-------CC----HHHHHHHHhhcC--
Confidence 46789999997654 7773 1224444477788898 776666521 01 133445555432
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~ 230 (237)
.=++..-||=. .|+..-++-..+ ++.+|+.+.++ +-++.|--=| +||++|+..+..-|.-++
T Consensus 143 ~VLiMtV~PGf---gGQ~f~~~~l~K-I~~lr~~~~~~-----~~~~~IeVDG-GI~~~ti~~l~~aGaD~~ 204 (228)
T PRK08091 143 LIQILTLDPRT---GTKAPSDLILDR-VIQVENRLGNR-----RVEKLISIDG-SMTLELASYLKQHQIDWV 204 (228)
T ss_pred EEEEEEECCCC---CCccccHHHHHH-HHHHHHHHHhc-----CCCceEEEEC-CCCHHHHHHHHHCCCCEE
Confidence 12456889944 466655554443 23445554432 2347788999 999999999877665554
No 57
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=79.29 E-value=39 Score=28.88 Aligned_cols=170 Identities=13% Similarity=0.006 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCc-EEeeeccccccCcCccccc--CHHHHHhCCCCeEE
Q 026522 17 PEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF-HVAAQNCWVKKGGAFTGEI--SAEMLVNLEIPWVI 93 (237)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i-~igAQnv~~~~~GA~TGei--Sa~mLkd~G~~~vi 93 (237)
.....++++.+.+. +...+....+-.+..+.+....++ ....+|.+-... |.+.. -..++++.|+++++
T Consensus 22 ~~~~~~~a~a~~~~------G~~~~~~~~~~~i~~i~~~~~~Pil~~~~~d~~~~~~--~~~~~~~~v~~a~~aGad~I~ 93 (221)
T PRK01130 22 PEIMAAMALAAVQG------GAVGIRANGVEDIKAIRAVVDVPIIGIIKRDYPDSEV--YITPTLKEVDALAAAGADIIA 93 (221)
T ss_pred HHHHHHHHHHHHHC------CCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCc--eECCCHHHHHHHHHcCCCEEE
Confidence 35566666665542 223233345566666655432222 234555321011 22222 26899999999998
Q ss_pred ecccccccccccCHHHHHHHHHHHHH-CCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEccccccc
Q 026522 94 LGHSERRLILNELNEFVGDKVAYALS-QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIG 172 (237)
Q Consensus 94 IGHSERR~~f~Etd~~V~~Kv~~al~-~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIG 172 (237)
+.=+-.+..-+|+...+. +.+.+ .++..+..+. +.++ + ..... ..-.+|.....+.-+
T Consensus 94 ~d~~~~~~p~~~~~~~~i---~~~~~~~~i~vi~~v~-t~ee---------~----~~a~~----~G~d~i~~~~~g~t~ 152 (221)
T PRK01130 94 LDATLRPRPDGETLAELV---KRIKEYPGQLLMADCS-TLEE---------G----LAAQK----LGFDFIGTTLSGYTE 152 (221)
T ss_pred EeCCCCCCCCCCCHHHHH---HHHHhCCCCeEEEeCC-CHHH---------H----HHHHH----cCCCEEEcCCceeec
Confidence 753322211124444443 44444 6776654332 2221 1 11211 112233322222111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHccc
Q 026522 173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLSF 227 (237)
Q Consensus 173 tG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~~ 227 (237)
......+.. .+..+.||+. . ++|++.+| ++ +++++.+++..|.
T Consensus 153 ~~~~~~~~~-~~~i~~i~~~----~------~iPvia~G-GI~t~~~~~~~l~~Ga 196 (221)
T PRK01130 153 ETKKPEEPD-FALLKELLKA----V------GCPVIAEG-RINTPEQAKKALELGA 196 (221)
T ss_pred CCCCCCCcC-HHHHHHHHHh----C------CCCEEEEC-CCCCHHHHHHHHHCCC
Confidence 111111111 1223333332 1 38999999 99 6999999888753
No 58
>PRK14057 epimerase; Provisional
Probab=78.77 E-value=50 Score=29.81 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=69.3
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCe-----------EEEEeCCcHHHHhcCCcHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK-----------VIACVGETLEQREAGSTMDVVAAQTK 149 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~-----------pIvCiGEt~e~r~~g~~~~vl~~Ql~ 149 (237)
.+.+.++|++++.+ |.|-= ..+.+=++...++|.+ ..++-+-+.+ .++
T Consensus 91 i~~~~~aGad~It~-H~Ea~-------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e-------------~i~ 149 (254)
T PRK14057 91 AQACVKAGAHCITL-QAEGD-------IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLD-------------VII 149 (254)
T ss_pred HHHHHHhCCCEEEE-eeccc-------cCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHH-------------HHH
Confidence 46788999997755 88732 1233333666667752 3444444433 234
Q ss_pred HHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccccc
Q 026522 150 AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGC 229 (237)
Q Consensus 150 ~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~ 229 (237)
..++.++ -=++..-||=. .|+..-++-..++ +.+|+.+.+. +-++.|--=| |||++|+.++..-|.-+
T Consensus 150 ~~l~~vD--~VLvMtV~PGf---gGQ~Fi~~~l~KI-~~lr~~~~~~-----~~~~~IeVDG-GI~~~ti~~l~~aGad~ 217 (254)
T PRK14057 150 PILSDVE--VIQLLAVNPGY---GSKMRSSDLHERV-AQLLCLLGDK-----REGKIIVIDG-SLTQDQLPSLIAQGIDR 217 (254)
T ss_pred HHHHhCC--EEEEEEECCCC---CchhccHHHHHHH-HHHHHHHHhc-----CCCceEEEEC-CCCHHHHHHHHHCCCCE
Confidence 4554332 12456889954 3666555544443 3334444332 3357899999 99999999988776655
Q ss_pred c
Q 026522 230 F 230 (237)
Q Consensus 230 ~ 230 (237)
+
T Consensus 218 ~ 218 (254)
T PRK14057 218 V 218 (254)
T ss_pred E
Confidence 4
No 59
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=78.31 E-value=5.1 Score=33.78 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 178 s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
+|+++.++++.+|+. ..++.|.--| ++|++|+.++-..|
T Consensus 110 ~~~~~~~~v~~l~~~---------~~~v~ie~SG-GI~~~ni~~ya~~g 148 (169)
T PF01729_consen 110 SPEDLKEAVEELREL---------NPRVKIEASG-GITLENIAEYAKTG 148 (169)
T ss_dssp CHHHHHHHHHHHHHH---------TTTSEEEEES-SSSTTTHHHHHHTT
T ss_pred CHHHHHHHHHHHhhc---------CCcEEEEEEC-CCCHHHHHHHHhcC
Confidence 899999999988754 3458999999 99999999988765
No 60
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=78.27 E-value=3.6 Score=36.80 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=44.0
Q ss_pred cCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 026522 71 KGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET 131 (237)
Q Consensus 71 ~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt 131 (237)
-.|+|+.|.-..|+++.|+++++-=-| |.+ -...|+++|.+.|+..|+ |.-+
T Consensus 173 m~gPfs~e~n~aL~~~~~i~~lVtK~S------G~~--g~~eKi~AA~~lgi~viv-I~RP 224 (248)
T PRK08057 173 LRGPFSLELERALLRQHRIDVVVTKNS------GGA--GTEAKLEAARELGIPVVM-IARP 224 (248)
T ss_pred eeCCCCHHHHHHHHHHcCCCEEEEcCC------Cch--hhHHHHHHHHHcCCeEEE-EeCC
Confidence 469999999999999999999997555 444 678899999999999887 5544
No 61
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=75.65 E-value=50 Score=28.15 Aligned_cols=113 Identities=19% Similarity=0.134 Sum_probs=72.3
Q ss_pred cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE---EEeCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI---ACVGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI---vCiGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
|-|.|..+-+++-|+++|+|-=+|=..+ .|..-..-.+.|.++||..= +.-.++. -.+|.+-.
T Consensus 16 ~qg~IDw~~v~~~gi~Fv~iKATEG~~~---~D~~f~~n~~~A~~~Gl~vGaYHf~~~~~~-----------~~~QA~~F 81 (190)
T cd06419 16 DDGYIDFNSLQSNGISFVYLRATQGASY---FDDNFLSNFSRAQGTGLSVGVIHTFSFSST-----------AAAQYRYF 81 (190)
T ss_pred CCCccCHHHHHhCCCeEEEEEeecCCCc---cChhHHHHHHHHHHCCCCEEEEEEeecCCC-----------HHHHHHHH
Confidence 6799999999999999999998887776 56778888899999999851 1221211 12455555
Q ss_pred HhccCC---CCCeEEEEcccccccCCCCCCHHHH-HHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 152 ADRVSS---WSNIVLAYEPVWAIGTGKVATPAQA-QEVHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 152 l~~i~~---~~~iiIAYEPvWAIGtG~~as~e~i-~~~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
+..+.. .-+++|-.|- . |. ...+++++ ..+.+|++. +.+.+| .-||||.+
T Consensus 82 ~~~v~~~~~~lp~vlD~E~--~-~~-~~~~~~~~~~~~~~fl~~-ve~~~g-----~~piIYt~ 135 (190)
T cd06419 82 IRKVGNNTGNLPIAIYVSY--Y-GD-YNPDTKKSTQKLGLLVQL-LEQHYN-----QSVIIRGT 135 (190)
T ss_pred HHhCCCCCCCCCeEEEEec--C-CC-CCCCHHHHHHHHHHHHHH-HHHHHC-----CCeEEEeC
Confidence 555532 2244555552 1 21 12455555 555666653 444444 35899998
No 62
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=75.43 E-value=12 Score=32.40 Aligned_cols=54 Identities=15% Similarity=0.006 Sum_probs=25.3
Q ss_pred EEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEee
Q 026522 7 VGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAA 64 (237)
Q Consensus 7 i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igA 64 (237)
...||-|-.......+.++.+.+. -...+++.. |-...+..+.+.++ .++.+.+
T Consensus 3 ~~~~~~~~~~~~~l~e~~~~~~e~---G~~~vEl~~-~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTELPFLERFAAAAQA---GFTGVEYLF-PYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcCCCHHHHHHHHHHc---CCCEEEecC-CccCCHHHHHHHHHHcCCeEEE
Confidence 456766654333344444444442 224577643 32233444444444 5555554
No 63
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=75.23 E-value=80 Score=30.31 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=107.8
Q ss_pred eEEEecccCCCHHHHHHHHHHHhcCCCCCC--CCceEEEcCccccHHHHHHhcC---CCcEEeeeccccccCcCcccccC
Q 026522 6 FVGGNWKCNGTPEEVKKIVSVLNEGQVPSS--DVVEVVVSPPFVFLGLVKSSLR---PGFHVAAQNCWVKKGGAFTGEIS 80 (237)
Q Consensus 6 ~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~--~~~~v~i~Pp~~~L~~~~~~~~---~~i~igAQnv~~~~~GA~TGeiS 80 (237)
+++|-=..-.+.++...+++.+.+...... ..+.+=+.|-......+..... ..+++|-|+.+.
T Consensus 92 ~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~----------- 160 (416)
T COG0635 92 YFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFND----------- 160 (416)
T ss_pred EECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCH-----------
Confidence 344444555677888888888876542111 2344556888777776644322 679999999885
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEE---eCCcHHHHhcCCcHHHHHHHHHHHHhcc-C
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIAC---VGETLEQREAGSTMDVVAAQTKAIADRV-S 156 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvC---iGEt~e~r~~g~~~~vl~~Ql~~~l~~i-~ 156 (237)
++||-+| |++ +.+.+...+..+.+.|+..|-| .|-+ ++|.+.+.+-|+.+++-- +
T Consensus 161 -~~lk~lg----------R~h----~~~~~~~a~~~~~~~g~~~in~DLIyglP------~QT~~~~~~~l~~a~~l~pd 219 (416)
T COG0635 161 -EVLKALG----------RIH----DEEEAKEAVELARKAGFTSINIDLIYGLP------GQTLESLKEDLEQALELGPD 219 (416)
T ss_pred -HHHHHhc----------CCC----CHHHHHHHHHHHHHcCCCcEEEEeecCCC------CCCHHHHHHHHHHHHhCCCC
Confidence 5677774 443 4456777789999999887744 3444 678888888888777632 2
Q ss_pred CCCCeEEEEcccccccC----CC-CCCHHHHHHHHHHHHHHHHhc
Q 026522 157 SWSNIVLAYEPVWAIGT----GK-VATPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 157 ~~~~iiIAYEPvWAIGt----G~-~as~e~i~~~~~~IR~~l~~~ 196 (237)
+..---++.||-+...- |+ .+++++..++++.+.+.|.+.
T Consensus 220 his~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~ 264 (416)
T COG0635 220 HLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKA 264 (416)
T ss_pred EEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHC
Confidence 33344478999877653 33 478888899999999998763
No 64
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=75.11 E-value=46 Score=27.46 Aligned_cols=113 Identities=20% Similarity=0.127 Sum_probs=71.1
Q ss_pred CcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE----EEeCCcHHHHhcCCcHHHHHHHHH
Q 026522 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI----ACVGETLEQREAGSTMDVVAAQTK 149 (237)
Q Consensus 74 A~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI----vCiGEt~e~r~~g~~~~vl~~Ql~ 149 (237)
.|.|.+...-|++-|+++|+|-=+|.-.+ .|.....-++.|.++||..= .|- +. --..|.+
T Consensus 7 ~~q~~~~~~~~~~~g~~fviik~t~G~~~---~D~~~~~~~~~a~~aGl~~G~Yhy~~~-~~-----------~a~~qa~ 71 (186)
T cd00599 7 SWQGSIDWNAVKAAGIDFVFIKATEGTTY---VDPKFATNRARARAAGLLVGAYHFARP-CA-----------NAEAQAD 71 (186)
T ss_pred CCCCCCCHHHHHhCCCcEEEEEEeCCCCc---cChHHHHHHHHHHHCCCceEEEEEecC-CC-----------CHHHHHH
Confidence 47888999999999999999999887554 56778888899999997531 122 11 1234555
Q ss_pred HHHhccC---CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 150 AIADRVS---SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 150 ~~l~~i~---~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
-.++.+. ...++.+-+|..-.-+ ++.+..+......+.+.+..| ..++||.+
T Consensus 72 ~fi~~~~~~~~~~~~~lDvE~~~~~~-----~~~~~~~~~~~f~~~~~~~gg-----~~~~iY~~ 126 (186)
T cd00599 72 NFVNTVPRDPGSLPLVLDVEDTGGGC-----SAAALAAWLNAFLNEVEALTG-----KKPIIYTS 126 (186)
T ss_pred HHHHHccCcCCCCCeEEEEecCCCCC-----CHHHHHHHHHHHHHHHHHHHC-----CceEEEEc
Confidence 5555543 2456778888742111 344433333333344444332 35799998
No 65
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=73.21 E-value=38 Score=29.56 Aligned_cols=115 Identities=12% Similarity=0.078 Sum_probs=63.9
Q ss_pred CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCC-eEEEEeCCcHHHH---hcCCcHHHHHHHHHHHHhcc
Q 026522 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL-KVIACVGETLEQR---EAGSTMDVVAAQTKAIADRV 155 (237)
Q Consensus 80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl-~pIvCiGEt~e~r---~~g~~~~vl~~Ql~~~l~~i 155 (237)
.++.+-+.||+.|++|=+=-+ |+.+ +++.... |= ..|+|+.=..... ..+.+...+.+++... .
T Consensus 92 dv~~~l~~Ga~~viigt~~~~------~~~~-~~~~~~~--~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 159 (233)
T cd04723 92 NAQEWLKRGASRVIVGTETLP------SDDD-EDRLAAL--GEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-P-- 159 (233)
T ss_pred HHHHHHHcCCCeEEEcceecc------chHH-HHHHHhc--CCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-C--
Confidence 455677899999999965322 2222 2222222 32 6788886432111 1233444444445433 2
Q ss_pred CCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCCh-hhHHHHHHcc
Q 026522 156 SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINV-SHVLVHLLLS 226 (237)
Q Consensus 156 ~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~-~Na~~~~~~~ 226 (237)
+.+ -|=-+-.-||+.....+.+.++. +. ..+|+++|| +|.. +-+.+++.+|
T Consensus 160 ---~~l--i~~di~~~G~~~g~~~~~~~~i~----~~----------~~ipvi~~G-Gi~s~edi~~l~~~G 211 (233)
T cd04723 160 ---EEL--IVLDIDRVGSGQGPDLELLERLA----AR----------ADIPVIAAG-GVRSVEDLELLKKLG 211 (233)
T ss_pred ---CeE--EEEEcCccccCCCcCHHHHHHHH----Hh----------cCCCEEEeC-CCCCHHHHHHHHHcC
Confidence 122 23345557787766665554432 21 138999999 8864 7788877765
No 66
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=73.14 E-value=19 Score=32.98 Aligned_cols=53 Identities=4% Similarity=0.095 Sum_probs=36.5
Q ss_pred CCeEEEEccccc---------------ccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHH
Q 026522 159 SNIVLAYEPVWA---------------IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVH 222 (237)
Q Consensus 159 ~~iiIAYEPvWA---------------IGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~ 222 (237)
++.++.|.|.|. +.+|..+||.++.++.+.||+. ++++++.--..++..++.+
T Consensus 203 ~~~~i~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~-----------~v~~If~e~~~~~~~~~~l 270 (311)
T PRK09545 203 GKGYFVFHDAYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQ-----------KATCVFAEPQFRPAVIESV 270 (311)
T ss_pred CCcEEEECchHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHc-----------CCCEEEecCCCChHHHHHH
Confidence 456788999883 4478889999999999998853 3555555425555544443
No 67
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=71.73 E-value=61 Score=27.65 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=58.7
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCC-eEEEEeC----CcHH---HHhcCCcHHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL-KVIACVG----ETLE---QREAGSTMDVVAAQTKAIA 152 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl-~pIvCiG----Et~e---~r~~g~~~~vl~~Ql~~~l 152 (237)
++.+.+.||+.|++|-+-- ++.+.+ +++.. +.|- ..++++. +... ......+...+.+++...
T Consensus 88 ~~~~~~~Gad~vvigs~~l-----~dp~~~-~~i~~--~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 158 (234)
T cd04732 88 IERLLDLGVSRVIIGTAAV-----KNPELV-KELLK--EYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEEL- 158 (234)
T ss_pred HHHHHHcCCCEEEECchHH-----hChHHH-HHHHH--HcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHc-
Confidence 4555579999999997743 222333 33333 2343 4455543 1000 001112222233333221
Q ss_pred hccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChh-hHHHHHHccccc
Q 026522 153 DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVS-HVLVHLLLSFGC 229 (237)
Q Consensus 153 ~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~-Na~~~~~~~~~~ 229 (237)
..+.+ .|=++..-|+..-+..+.+.+ +++. .++|++++| +++.. .+..++.. ||
T Consensus 159 ----ga~~i--ii~~~~~~g~~~g~~~~~i~~----i~~~----------~~ipvi~~G-Gi~~~~di~~~~~~--Ga 213 (234)
T cd04732 159 ----GVKAI--IYTDISRDGTLSGPNFELYKE----LAAA----------TGIPVIASG-GVSSLDDIKALKEL--GV 213 (234)
T ss_pred ----CCCEE--EEEeecCCCccCCCCHHHHHH----HHHh----------cCCCEEEec-CCCCHHHHHHHHHC--CC
Confidence 12233 344677777765555444333 3322 148999999 99854 48887775 55
No 68
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.98 E-value=10 Score=32.25 Aligned_cols=26 Identities=8% Similarity=0.089 Sum_probs=21.9
Q ss_pred cccEEEcCCCCChhhHHHHHHcccccc
Q 026522 204 ATRIIYGGISINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 204 ~i~ILYGG~SV~~~Na~~~~~~~~~~~ 230 (237)
++|++==| +++++|+.+++.-|.-|.
T Consensus 152 ~ipvvaiG-GI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 152 HIPLIPTG-GVTLENAQAFIQAGAIAV 177 (187)
T ss_pred CCcEEEeC-CCCHHHHHHHHHCCCeEE
Confidence 48999999 999999999998776553
No 69
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=68.10 E-value=5.8 Score=35.61 Aligned_cols=80 Identities=26% Similarity=0.262 Sum_probs=53.8
Q ss_pred ceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHH
Q 026522 38 VEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYA 117 (237)
Q Consensus 38 ~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~a 117 (237)
+-+-+.|+...+..+.+. .+ -..|+ ....|+|+-|.--.|+++.|+++++-=-| |++ --...|+++|
T Consensus 153 ~~~RvLP~~~~l~~~~~~---G~--~~~~i-ia~~gPfs~e~n~al~~~~~i~~lVtK~S------G~~-Gg~~eKi~AA 219 (256)
T TIGR00715 153 VFVRVLPYPQALAQALKL---GF--PSDRI-IAMRGPFSEELEKALLREYRIDAVVTKAS------GEQ-GGELEKVKAA 219 (256)
T ss_pred EEEEECCCchhhHHHHHc---CC--ChhcE-EEEeCCCCHHHHHHHHHHcCCCEEEEcCC------CCc-cchHHHHHHH
Confidence 445556666677655432 11 11222 13579999999999999999999986333 221 0367899999
Q ss_pred HHCCCeEEEEeCCc
Q 026522 118 LSQGLKVIACVGET 131 (237)
Q Consensus 118 l~~gl~pIvCiGEt 131 (237)
.+.|+.+|+ |.-+
T Consensus 220 ~~lgi~viv-I~RP 232 (256)
T TIGR00715 220 EALGINVIR-IARP 232 (256)
T ss_pred HHcCCcEEE-EeCC
Confidence 999999887 5554
No 70
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=67.44 E-value=20 Score=30.95 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=67.2
Q ss_pred CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCC-cHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 026522 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGE-TLEQREAGSTMDVVAAQTKAIADRVSSW 158 (237)
Q Consensus 80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE-t~e~r~~g~~~~vl~~Ql~~~l~~i~~~ 158 (237)
=.+.++++|++++. =|.| +.+.+.+-++...++|+++=+.+.= |.- +.++..++. .
T Consensus 72 ~i~~~~~~g~~~i~-~H~E-------~~~~~~~~i~~ik~~g~k~GialnP~T~~------------~~~~~~l~~---v 128 (201)
T PF00834_consen 72 YIEEFAEAGADYIT-FHAE-------ATEDPKETIKYIKEAGIKAGIALNPETPV------------EELEPYLDQ---V 128 (201)
T ss_dssp HHHHHHHHT-SEEE-EEGG-------GTTTHHHHHHHHHHTTSEEEEEE-TTS-G------------GGGTTTGCC---S
T ss_pred HHHHHHhcCCCEEE-Eccc-------chhCHHHHHHHHHHhCCCEEEEEECCCCc------------hHHHHHhhh---c
Confidence 36779999999664 4777 3334555568888899998777642 211 112233332 2
Q ss_pred CC-eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccccc
Q 026522 159 SN-IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGC 229 (237)
Q Consensus 159 ~~-iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~ 229 (237)
+- ++..-||= .+|+...|+-.++ ++.+|+.+.+. +..+.|.-=| |||.+|+..+..-|.=.
T Consensus 129 D~VlvMsV~PG---~~Gq~f~~~~~~K-I~~l~~~~~~~-----~~~~~I~vDG-GI~~~~~~~~~~aGad~ 190 (201)
T PF00834_consen 129 DMVLVMSVEPG---FGGQKFIPEVLEK-IRELRKLIPEN-----GLDFEIEVDG-GINEENIKQLVEAGADI 190 (201)
T ss_dssp SEEEEESS-TT---TSSB--HGGHHHH-HHHHHHHHHHH-----TCGSEEEEES-SESTTTHHHHHHHT--E
T ss_pred CEEEEEEecCC---CCcccccHHHHHH-HHHHHHHHHhc-----CCceEEEEEC-CCCHHHHHHHHHcCCCE
Confidence 33 34567782 2566654444433 34445555432 3458899999 99999999988766543
No 71
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=67.22 E-value=11 Score=30.54 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=19.7
Q ss_pred EEEEcccccccCCCC--CCHHHHHHHHHHHHHHH
Q 026522 162 VLAYEPVWAIGTGKV--ATPAQAQEVHFELRKWL 193 (237)
Q Consensus 162 iIAYEPvWAIGtG~~--as~e~i~~~~~~IR~~l 193 (237)
.||+ | +||||.- +..+-++-+.+.||++|
T Consensus 110 SIAf-P--ai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 110 SIAL-C--VISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred EEEE-C--CcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 4677 7 7888876 44455566777777763
No 72
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=66.19 E-value=45 Score=29.08 Aligned_cols=54 Identities=11% Similarity=-0.076 Sum_probs=30.0
Q ss_pred EEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEee
Q 026522 7 VGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAA 64 (237)
Q Consensus 7 i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igA 64 (237)
..+||-|-...-...+.++.+.+. -...+++.. |....+..+.+.+. .++.+.+
T Consensus 4 ~~~~~~~~~~~~~l~~~l~~~a~~---Gf~~VEl~~-~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 4 FSANLSMLFGEYDFLARFEKAAQC---GFRGVEFMF-PYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeeeehhccCCCHHHHHHHHHHh---CCCEEEEcC-CCCCCHHHHHHHHHHcCCcEEE
Confidence 567887765443344445545442 224678743 54556666666665 5566543
No 73
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=65.93 E-value=8.7 Score=37.00 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccc---c-----CcccEEEcCCCCChhhHHHHH
Q 026522 178 TPAQAQEVHFELRKWLLANTSPEI---A-----AATRIIYGGISINVSHVLVHL 223 (237)
Q Consensus 178 s~e~i~~~~~~IR~~l~~~~~~~~---a-----~~i~ILYGG~SV~~~Na~~~~ 223 (237)
+.-+..++....|+.|.+.||..+ + +.++|+||+ |++.+-+.+||
T Consensus 292 DSGD~~~l~~~~~~~L~~~FG~~~n~kGykvl~~~v~Ii~gd-~ide~~i~~Il 344 (407)
T cd01569 292 DSGDPVDIICGVLEILGEIFGGTVNSKGYKVLNPHVRIIQGD-GITLERIEEIL 344 (407)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCcccCCcccccCCceEEEEcC-CCCHHHHHHHH
Confidence 333445566677888887665433 2 489999999 99999999755
No 74
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=65.81 E-value=21 Score=32.73 Aligned_cols=84 Identities=17% Similarity=0.083 Sum_probs=46.3
Q ss_pred HHHHHCC--CeEEEEeCCcHHHH----hcCCcHHHHHHHHHHHHh-------c-----------cCCCCCeE-EEEcccc
Q 026522 115 AYALSQG--LKVIACVGETLEQR----EAGSTMDVVAAQTKAIAD-------R-----------VSSWSNIV-LAYEPVW 169 (237)
Q Consensus 115 ~~al~~g--l~pIvCiGEt~e~r----~~g~~~~vl~~Ql~~~l~-------~-----------i~~~~~ii-IAYEPvW 169 (237)
+.|+++| |.|++|.||+.-=+ ..|....-+.+.+...+. + ++.-.++. +.=+|+-
T Consensus 173 klAl~~Ga~LVPv~~FGE~d~~~~~~~~~~~~~r~~q~~~~~~~g~~~~~f~Grg~f~~~~~gllP~r~pi~~VVG~PI~ 252 (297)
T PF03982_consen 173 KLALQHGAPLVPVYSFGENDLYDQVQNPPGSWLRRFQRWLKKKFGFSLPLFWGRGIFPSYSFGLLPYRRPITTVVGKPIP 252 (297)
T ss_pred HhHHHcCCcEEeEEEeCChhheeeccCCchhHHHHHHHHHHHHcCcceeeeecccccCCCcccccccCCceEEEeeceec
Confidence 7788765 89999999984211 112222223334443321 1 11112332 3334443
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhcCCc
Q 026522 170 AIGTGKVATPAQAQEVHFELRKWLLANTSP 199 (237)
Q Consensus 170 AIGtG~~as~e~i~~~~~~IR~~l~~~~~~ 199 (237)
.=-. ..+|.||+++.|+.-=+.|.++|++
T Consensus 253 v~~~-~~Pt~e~Vd~~H~~Y~~~L~~LFd~ 281 (297)
T PF03982_consen 253 VPKI-ENPTQEDVDKLHARYIEALRELFDK 281 (297)
T ss_pred ccCC-CCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2368999999999888888888753
No 75
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=65.41 E-value=96 Score=28.58 Aligned_cols=136 Identities=15% Similarity=0.076 Sum_probs=71.9
Q ss_pred cccCH---HHHHhCCCCeEEecc-----cccccccc---cCHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcH
Q 026522 77 GEISA---EMLVNLEIPWVILGH-----SERRLILN---ELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTM 141 (237)
Q Consensus 77 GeiSa---~mLkd~G~~~viIGH-----SERR~~f~---Etd~~V~~Kv~~al~~gl~p----IvCiGEt~e~r~~g~~~ 141 (237)
|..+. ..||++|++.+..+. .|.|+... -+-+..-+-++.|.+.|+.+ |+=.||+.++|. ++.
T Consensus 137 g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~--~~l 214 (343)
T TIGR03551 137 GLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWV--DHL 214 (343)
T ss_pred CCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHH--HHH
Confidence 44444 468999999876332 33333222 25556667789999999975 444568887764 122
Q ss_pred HHHHHHHHHHHhccCCCCCeE-EEEcccccccCCC--------CCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCC
Q 026522 142 DVVAAQTKAIADRVSSWSNIV-LAYEPVWAIGTGK--------VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGI 212 (237)
Q Consensus 142 ~vl~~Ql~~~l~~i~~~~~ii-IAYEPvWAIGtG~--------~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~ 212 (237)
..+ ++|+.--. .+..++ +-|-|. ||.. .+++++.-++++..|=.+- +.+.-+-||
T Consensus 215 ~~l-r~l~~~~~---~~~~~iP~~f~~~---gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp--------~~~~~i~a~- 278 (343)
T TIGR03551 215 LIL-REIQEETG---GFTEFVPLPFVHY---NAPLYLKGMARPGPTGREDLKVHAIARILLH--------GLIDNIQAS- 278 (343)
T ss_pred HHH-HHhhHHhC---CeeEEEeccccCC---CCccccccCCCCCCCHHHHHHHHHHHHHhCC--------CcccCeecc-
Confidence 222 11221111 111222 333343 5542 2578888888888886541 112345566
Q ss_pred CCChhhHHHHHHcccccc
Q 026522 213 SINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 213 SV~~~Na~~~~~~~~~~~ 230 (237)
-++-+--..-+.+-+|+-
T Consensus 279 ~~~l~~~~~~~~l~~Gan 296 (343)
T TIGR03551 279 WVKLGKKLAQVALRCGAN 296 (343)
T ss_pred ccccCHHHHHHHHhCCCc
Confidence 544443333444555553
No 76
>PRK01060 endonuclease IV; Provisional
Probab=65.36 E-value=34 Score=30.03 Aligned_cols=27 Identities=7% Similarity=0.040 Sum_probs=14.0
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHH
Q 026522 160 NIVLAYEPVWAIGTGKVATPAQAQEVH 186 (237)
Q Consensus 160 ~iiIAYEPvWAIGtG~~as~e~i~~~~ 186 (237)
.+.|+.||.|.-++....+++++.++.
T Consensus 139 gv~l~iEn~~~~~~~~~~~~~~~~~l~ 165 (281)
T PRK01060 139 GVTIVLENTAGQGSELGRRFEELARII 165 (281)
T ss_pred CCEEEEecCCCCCCcccCCHHHHHHHH
Confidence 466677776644433333555554433
No 77
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=63.23 E-value=1.2e+02 Score=27.62 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=63.9
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc-HHHHhcCCcHHHHHHHHHHHHhccCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET-LEQREAGSTMDVVAAQTKAIADRVSSWS 159 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt-~e~r~~g~~~~vl~~Ql~~~l~~i~~~~ 159 (237)
..++++.|++.+|+=-- -+.|.++.. +.|.++||.+|+=+-=| .++| +. .+.+. .+
T Consensus 115 ~~~~~~~GvdGlivpDL----P~ee~~~~~----~~~~~~gi~~I~lvaPtt~~~r--------l~----~i~~~---a~ 171 (265)
T COG0159 115 LRRAKEAGVDGLLVPDL----PPEESDELL----KAAEKHGIDPIFLVAPTTPDER--------LK----KIAEA---AS 171 (265)
T ss_pred HHHHHHcCCCEEEeCCC----ChHHHHHHH----HHHHHcCCcEEEEeCCCCCHHH--------HH----HHHHh---CC
Confidence 56788888888887432 233445444 77889999998755433 2232 22 22221 12
Q ss_pred CeE--EEEcccccccCCCCCC-HHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHcccc
Q 026522 160 NIV--LAYEPVWAIGTGKVAT-PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLSFG 228 (237)
Q Consensus 160 ~ii--IAYEPvWAIGtG~~as-~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~~~ 228 (237)
.++ +..=++ ||..-. .+.+.+.++.||+. . ++||++|= +| +|+-++++...+.|
T Consensus 172 GFiY~vs~~Gv----TG~~~~~~~~~~~~v~~vr~~---------~-~~Pv~vGF-GIs~~e~~~~v~~~ADG 229 (265)
T COG0159 172 GFIYYVSRMGV----TGARNPVSADVKELVKRVRKY---------T-DVPVLVGF-GISSPEQAAQVAEAADG 229 (265)
T ss_pred CcEEEEecccc----cCCCcccchhHHHHHHHHHHh---------c-CCCeEEec-CcCCHHHHHHHHHhCCe
Confidence 222 333332 554432 33467777777764 1 58999996 66 57778877766544
No 78
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.17 E-value=34 Score=31.37 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 176 ~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
..+|+++++++..+|+. ..++++.-=| ++|++|+.++...|
T Consensus 224 n~~~e~l~~av~~~~~~---------~~~i~leAsG-GIt~~ni~~ya~tG 264 (288)
T PRK07428 224 NMPVDLMQQAVQLIRQQ---------NPRVKIEASG-NITLETIRAVAETG 264 (288)
T ss_pred CCCHHHHHHHHHHHHhc---------CCCeEEEEEC-CCCHHHHHHHHHcC
Confidence 47899999998887753 3457899889 99999999987654
No 79
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=62.16 E-value=1.1e+02 Score=28.05 Aligned_cols=107 Identities=20% Similarity=0.148 Sum_probs=60.7
Q ss_pred ccCHHHHHhCCCCeEEe-----ccccccc-cccc--CHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHH
Q 026522 78 EISAEMLVNLEIPWVIL-----GHSERRL-ILNE--LNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVA 145 (237)
Q Consensus 78 eiSa~mLkd~G~~~viI-----GHSERR~-~f~E--td~~V~~Kv~~al~~gl~p----IvCiGEt~e~r~~g~~~~vl~ 145 (237)
+=..+.||++|++.+-- .+.|-|+ ++.. |-+..-+-++.|.+.|+.. |+=.||+.++|.. ..
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~------~l 216 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIE------HL 216 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHH------HH
Confidence 44568899999987653 2345444 3333 5566667778888999863 3334688877632 12
Q ss_pred HHHHHHHhccCCCCCeE-EEEcccccccCC----CCCCHHHHHHHHHHHHHHH
Q 026522 146 AQTKAIADRVSSWSNIV-LAYEPVWAIGTG----KVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 146 ~Ql~~~l~~i~~~~~ii-IAYEPvWAIGtG----~~as~e~i~~~~~~IR~~l 193 (237)
..|+.+-........++ +-|-|. ||. .++++++.-++++..|-.+
T Consensus 217 ~~l~~l~~~~~~~~~fIP~~f~p~---~tpl~~~~~~~~~e~l~~iA~~Rl~l 266 (340)
T TIGR03699 217 ERIRELQDKTGGFTAFIPWTFQPG---NTELGKKRPATSTEYLKVLAISRIFL 266 (340)
T ss_pred HHHHHhchhhCCeeEEEeecccCC---CCcccCCCCCCHHHHHHHHHHHHHcC
Confidence 22222211000111212 234452 553 2468899888888888654
No 80
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=61.87 E-value=50 Score=29.73 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHHHHHhccCCCCCeEEEEccccc-------------c--cCCCCCCHHHHHHHHHHHHH
Q 026522 144 VAAQTKAIADRVSSWSNIVLAYEPVWA-------------I--GTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 144 l~~Ql~~~l~~i~~~~~iiIAYEPvWA-------------I--GtG~~as~e~i~~~~~~IR~ 191 (237)
+.++++..++.+...++.+++|+|.|. + ++|..+||.++.++.+.||+
T Consensus 162 l~~~~~~~l~~~~~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~ 224 (287)
T cd01137 162 LDEWAKAKFATIPAEKRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKK 224 (287)
T ss_pred HHHHHHHHHhcCCcccCEEEEecccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHH
Confidence 333444444443323466889999882 2 46888999999999999987
No 81
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=61.31 E-value=97 Score=25.93 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=40.5
Q ss_pred CcccccCHHH----HHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeE
Q 026522 74 AFTGEISAEM----LVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124 (237)
Q Consensus 74 A~TGeiSa~m----Lkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~p 124 (237)
.|.|.+.... +|+-|+++|+|-=+|--.+ .|.....-++.|.++||..
T Consensus 7 ~~qg~i~~~~~~~~~k~~gi~fviikateG~~~---~D~~~~~n~~~a~~aGl~~ 58 (194)
T cd06524 7 HYQGKIDWQKVKAKVKDSPVAFVFIKATEGVDI---VDPDFPTNWEGAKEAGIIR 58 (194)
T ss_pred CcCCCCChhhhhhhhhhcCccEEEEEecCCCCc---cChHHHHHHHHHHHcCCce
Confidence 4788898887 8999999999999887544 5778888999999999964
No 82
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=61.10 E-value=1.2e+02 Score=26.73 Aligned_cols=116 Identities=12% Similarity=0.164 Sum_probs=72.1
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~ 160 (237)
.+.+.+.|++++.+ |.|- ...+.+=++...++|+++=+-+.=. ... +.+...++.++ .=
T Consensus 78 i~~~~~~gad~I~~-H~Ea-------~~~~~~~l~~Ir~~g~k~GlalnP~-------T~~----~~i~~~l~~vD--~V 136 (223)
T PRK08745 78 VPDFADAGATTISF-HPEA-------SRHVHRTIQLIKSHGCQAGLVLNPA-------TPV----DILDWVLPELD--LV 136 (223)
T ss_pred HHHHHHhCCCEEEE-cccC-------cccHHHHHHHHHHCCCceeEEeCCC-------CCH----HHHHHHHhhcC--EE
Confidence 57889999997755 7774 2224444577888899886665421 111 22334454332 12
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccc
Q 026522 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSF 227 (237)
Q Consensus 161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~ 227 (237)
++..-||=. .|+..-++..+++ +.+|+.+.+. +.+++|---| +||.+|+..+..-|.
T Consensus 137 lvMtV~PGf---~GQ~fi~~~l~KI-~~l~~~~~~~-----~~~~~IeVDG-GI~~eti~~l~~aGa 193 (223)
T PRK08745 137 LVMSVNPGF---GGQAFIPSALDKL-RAIRKKIDAL-----GKPIRLEIDG-GVKADNIGAIAAAGA 193 (223)
T ss_pred EEEEECCCC---CCccccHHHHHHH-HHHHHHHHhc-----CCCeeEEEEC-CCCHHHHHHHHHcCC
Confidence 457889943 4776666555543 3445555432 2347899999 999999999876654
No 83
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=60.90 E-value=1e+02 Score=25.92 Aligned_cols=47 Identities=15% Similarity=0.064 Sum_probs=39.3
Q ss_pred cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeE
Q 026522 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124 (237)
Q Consensus 75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~p 124 (237)
|+|.|-..-||+.|+++|+|==.|-..+ .|....+-.+.|.++||..
T Consensus 9 ~q~~i~w~~vk~~g~~fv~ikateg~~~---~D~~f~~n~~~A~~aGl~~ 55 (196)
T cd06416 9 PTSVSTFQCLKNNGYSFAIIRAYRSNGS---FDPNSVTNIKNARAAGLST 55 (196)
T ss_pred ccChhhhhHHHhCCceEEEEEEEccCCc---cChHHHHHHHHHHHcCCcc
Confidence 7789999999999999999965554333 5888999999999999875
No 84
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=60.57 E-value=12 Score=33.74 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.5
Q ss_pred ccEEEcCCCCChhhHHHHHHcccc
Q 026522 205 TRIIYGGISINVSHVLVHLLLSFG 228 (237)
Q Consensus 205 i~ILYGG~SV~~~Na~~~~~~~~~ 228 (237)
+||.+|| +|+.+|+++++..|.-
T Consensus 77 ~~v~vGG-GIr~e~v~~~l~aGa~ 99 (253)
T TIGR02129 77 GGLQVGG-GINDTNAQEWLDEGAS 99 (253)
T ss_pred CCEEEeC-CcCHHHHHHHHHcCCC
Confidence 8999999 9999999998887653
No 85
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=60.55 E-value=1e+02 Score=25.86 Aligned_cols=120 Identities=11% Similarity=0.076 Sum_probs=70.9
Q ss_pred cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEE---EEeCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI---ACVGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pI---vCiGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
|.|.|....+|+.|+++|+|==+|...-=.-.|+....-++.|.++||..= ++-..+.. --.+|.+-.
T Consensus 9 ~q~~id~~~~k~~g~~fviiKateG~~g~~~~D~~~~~~~~~A~~aGl~~G~YHf~~~~~~~---------~a~~qA~~f 79 (191)
T cd06414 9 WQGDIDWKKVKASGVDFAIIRAGYGGYGELQEDKYFEENIKGAKAAGIPVGVYFYSYAVTVA---------EAREEAEFV 79 (191)
T ss_pred cCCccCHHHHHhCCCCEEEEEEecCCCcccccCHHHHHHHHHHHHCCCceEEEEEEEeCCHH---------HHHHHHHHH
Confidence 678899999999999999998888764000268889999999999999641 11111111 112344444
Q ss_pred HhccCC---CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 152 ADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 152 l~~i~~---~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
++.+.. .-++++-+|-.- +.+...+..+..+.+....+.+.+ .|. -++||-+
T Consensus 80 ~~~~~~~~~~~~~~lD~E~~~--~~~~~~~~~~~~~~~~~f~~~v~~-~G~-----~~~iY~~ 134 (191)
T cd06414 80 LRLIKGYKLSYPVYYDLEDET--QLGAGLSKDQRTDIANAFCETIEA-AGY-----YPGIYAN 134 (191)
T ss_pred HHHhhccCCCCCeEEEeecCC--CCCCCCCHHHHHHHHHHHHHHHHH-cCC-----CeEEEec
Confidence 443321 225678888631 111124555554443333333443 232 4899998
No 86
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=60.40 E-value=45 Score=32.79 Aligned_cols=82 Identities=2% Similarity=0.001 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCcHHHHhcC-----CcHHHHHHHHHHHHhccCCCCCeEEEEcccc-------------
Q 026522 108 EFVGDKVAYALSQGLKVIACVGETLEQREAG-----STMDVVAAQTKAIADRVSSWSNIVLAYEPVW------------- 169 (237)
Q Consensus 108 ~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g-----~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvW------------- 169 (237)
....+++...+...|.-+. .+..+.++++ +..+.+.++++..++.++...+.+++|+|.|
T Consensus 317 P~na~~~a~~Ia~~LselD--P~na~~Y~~Na~ay~~eL~~Ld~~~~~~la~ip~k~r~vvt~H~af~YLa~~YGL~~~~ 394 (479)
T TIGR03772 317 VKNAIAYVEVIRDKLIEVD--PRGAQAYRSNASAYIHRLERLDTYVRRTIATIPPSRRHLITTHDAYSYLGQAYGLNIAG 394 (479)
T ss_pred HHHHHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCEEEEECCcHHHHHHHCCCeEEe
Confidence 3344555555554444332 3333333322 1123345555556655543456789999988
Q ss_pred --cccCCCCCCHHHHHHHHHHHHH
Q 026522 170 --AIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 170 --AIGtG~~as~e~i~~~~~~IR~ 191 (237)
.+..|..+|+.++.++.+.||+
T Consensus 395 ~~~~~~~~ePS~~~L~~Li~~IK~ 418 (479)
T TIGR03772 395 FVTPNPAVEPSLADRRRLTRTIEN 418 (479)
T ss_pred eeccCCCCCCCHHHHHHHHHHHHH
Confidence 2457888999999999999985
No 87
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=60.27 E-value=1.2e+02 Score=26.76 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=72.6
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSN 160 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~ 160 (237)
.+.+.++|++++.+ |.|. ++..+.+=++...++|+++=+-+.=. ... +.+..+|+.++ .=
T Consensus 75 i~~~~~aGad~it~-H~Ea------~~~~~~~~i~~Ik~~G~kaGlalnP~-------T~~----~~l~~~l~~vD--~V 134 (229)
T PRK09722 75 IDQLADAGADFITL-HPET------INGQAFRLIDEIRRAGMKVGLVLNPE-------TPV----ESIKYYIHLLD--KI 134 (229)
T ss_pred HHHHHHcCCCEEEE-CccC------CcchHHHHHHHHHHcCCCEEEEeCCC-------CCH----HHHHHHHHhcC--EE
Confidence 46788999998766 6663 11234455588888999987666531 111 23444554432 12
Q ss_pred eEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccc
Q 026522 161 IVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFG 228 (237)
Q Consensus 161 iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~ 228 (237)
++..-||=. +|+..-|+-.+++ +.+|+.+.+. +.++.|--=| +||.+|+.++..-|.-
T Consensus 135 LvMsV~PGf---~GQ~fi~~~l~KI-~~lr~~~~~~-----~~~~~IeVDG-GI~~~~i~~~~~aGad 192 (229)
T PRK09722 135 TVMTVDPGF---AGQPFIPEMLDKI-AELKALRERN-----GLEYLIEVDG-SCNQKTYEKLMEAGAD 192 (229)
T ss_pred EEEEEcCCC---cchhccHHHHHHH-HHHHHHHHhc-----CCCeEEEEEC-CCCHHHHHHHHHcCCC
Confidence 456889933 4666666655543 3445555432 3357789999 9999999998765543
No 88
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=60.12 E-value=1.7e+02 Score=28.21 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=65.7
Q ss_pred cCHHHHHhCCCCeEEec----ccccccccc--cCHHHHHHHHHHHHHCCCeEE-EE--eCCcHHHHhcCCcHHHHHHHHH
Q 026522 79 ISAEMLVNLEIPWVILG----HSERRLILN--ELNEFVGDKVAYALSQGLKVI-AC--VGETLEQREAGSTMDVVAAQTK 149 (237)
Q Consensus 79 iSa~mLkd~G~~~viIG----HSERR~~f~--Etd~~V~~Kv~~al~~gl~pI-vC--iGEt~e~r~~g~~~~vl~~Ql~ 149 (237)
=-.+.|+++|++.+-+| +.+-++.++ -+.+.+.+-++.+.+.|+..| +. .|=+ |+|.+.+.+-++
T Consensus 153 e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlP------gqt~e~~~~tl~ 226 (453)
T PRK13347 153 EMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLP------HQTVESFRETLD 226 (453)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCC------CCCHHHHHHHHH
Confidence 34567889999999999 333222221 355677788899999998632 22 2422 344445555555
Q ss_pred HHHhccCCCCCeE-EEE--cccc------cccCCCCCCHHHHHHHHHHHHHHHHhc
Q 026522 150 AIADRVSSWSNIV-LAY--EPVW------AIGTGKVATPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 150 ~~l~~i~~~~~ii-IAY--EPvW------AIGtG~~as~e~i~~~~~~IR~~l~~~ 196 (237)
.+++ +. .+.+. ..| .| | .||....+++++..++...+.+.|.+.
T Consensus 227 ~~~~-l~-p~~i~~y~l~~~p-~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~ 279 (453)
T PRK13347 227 KVIA-LS-PDRIAVFGYAHVP-SRRKNQRLIDEAALPDAEERLRQARAVADRLLAA 279 (453)
T ss_pred HHHh-cC-CCEEEEecccccc-chhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHC
Confidence 5443 11 12221 122 23 3 356666678888889999999988764
No 89
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=59.59 E-value=3.4 Score=35.28 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=25.4
Q ss_pred cccc-CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 169 WAIG-TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 169 WAIG-tG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
...| ||++.+.+.+.+..+.. ...|++.+| ++||+|+.+++.
T Consensus 124 ~~~GgtG~~~dw~~~~~~~~~~-------------~~~p~iLAG-Gl~p~NV~~ai~ 166 (197)
T PF00697_consen 124 SGSGGTGKTFDWSLLKKIVESY-------------SPKPVILAG-GLNPENVREAIR 166 (197)
T ss_dssp SSSTSSSS---GGGGCCCHHT--------------GTSTEEEES-S--TTTHHHHHH
T ss_pred cCCCcCCcccCHHHhhhhhhhc-------------ccCcEEEEc-CCChHHHHHHHH
Confidence 4454 99988776654322211 147999999 999999999876
No 90
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=59.49 E-value=1.3e+02 Score=26.69 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=75.0
Q ss_pred CcccccCHHHHHhCCCCeEE-ecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 026522 74 AFTGEISAEMLVNLEIPWVI-LGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA 152 (237)
Q Consensus 74 A~TGeiSa~mLkd~G~~~vi-IGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l 152 (237)
+=||.+-++|..+.|++|+- +|=+ .+++|.+=++.|.+.|....+=.=. ..+.+-..++|+..-
T Consensus 66 ~D~G~~e~~ma~~aGAd~~tV~g~A--------~~~TI~~~i~~A~~~~~~v~iDl~~-------~~~~~~~~~~l~~~g 130 (217)
T COG0269 66 ADAGAIEARMAFEAGADWVTVLGAA--------DDATIKKAIKVAKEYGKEVQIDLIG-------VWDPEQRAKWLKELG 130 (217)
T ss_pred cchhHHHHHHHHHcCCCEEEEEecC--------CHHHHHHHHHHHHHcCCeEEEEeec-------CCCHHHHHHHHHHhC
Confidence 45788899999999999975 4544 5788999999999999777652211 123334445565421
Q ss_pred hccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 153 DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 153 ~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
. ..++---+.=+=-+|+..+-+++++ +|+.. ....++=-.| +++|+++.++..++
T Consensus 131 v------d~~~~H~g~D~q~~G~~~~~~~l~~----ik~~~--------~~g~~vAVaG-GI~~~~i~~~~~~~ 185 (217)
T COG0269 131 V------DQVILHRGRDAQAAGKSWGEDDLEK----IKKLS--------DLGAKVAVAG-GITPEDIPLFKGIG 185 (217)
T ss_pred C------CEEEEEecccHhhcCCCccHHHHHH----HHHhh--------ccCceEEEec-CCCHHHHHHHhcCC
Confidence 1 1222222332222577666566544 34332 1125787888 99999999988776
No 91
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=58.65 E-value=97 Score=25.05 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=20.8
Q ss_pred cccEEEcCCCCChhhHHHHHHccccc
Q 026522 204 ATRIIYGGISINVSHVLVHLLLSFGC 229 (237)
Q Consensus 204 ~i~ILYGG~SV~~~Na~~~~~~~~~~ 229 (237)
++||+--| +++++|+.+++..|+..
T Consensus 150 ~~pv~a~G-Gi~~~~i~~~~~~Ga~~ 174 (196)
T cd00564 150 EIPVVAIG-GITPENAAEVLAAGADG 174 (196)
T ss_pred CCCEEEEC-CCCHHHHHHHHHcCCCE
Confidence 37888888 89999999999887654
No 92
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=58.06 E-value=15 Score=36.01 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhcCCccc---c-----CcccEEEcCCCCChhhHHHHH
Q 026522 180 AQAQEVHFELRKWLLANTSPEI---A-----AATRIIYGGISINVSHVLVHL 223 (237)
Q Consensus 180 e~i~~~~~~IR~~l~~~~~~~~---a-----~~i~ILYGG~SV~~~Na~~~~ 223 (237)
-+..++....|+.|.+.||.++ + .+++|+||| |++.+-+.+|+
T Consensus 297 GD~~~i~~~vr~~L~e~fG~t~n~kGykvL~~~v~Ii~s~-glde~~i~~il 347 (463)
T PRK09198 297 GDPVTIICGTLELLDEIFGGTVNSKGYKVLNPHVGVIQGD-GITLDSIEAIL 347 (463)
T ss_pred CCHHHHHHHHHHHHHHhhCcccccCcccccCCCeEEEEeC-CCCHHHHHHHH
Confidence 3445556667888888776542 2 389999999 99999999976
No 93
>PRK06934 flavodoxin; Provisional
Probab=57.52 E-value=9.2 Score=33.75 Aligned_cols=57 Identities=16% Similarity=0.374 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCc-----------HHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEccccc
Q 026522 108 EFVGDKVAYALSQGLKVIACVGET-----------LEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWA 170 (237)
Q Consensus 108 ~~V~~Kv~~al~~gl~pIvCiGEt-----------~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWA 170 (237)
+.|++.++..+...|--|-....- ..+++.+. ...|.....+++..+.++|.| |+|.
T Consensus 74 k~vAe~Ia~~~gaDl~eI~~~~~Y~~~yd~~~~~a~~E~~~~~-----~P~L~~~~~dl~~YD~I~IG~-PIWw 141 (221)
T PRK06934 74 QYVAQIIQEETGGDLFRIETVKPYPRQHDPLLKYAEQEVKEGG-----RPEMREKIQNLADYDQIFIGY-PIWW 141 (221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccCCCCchhhhHHHHhhhcCC-----CHHHHHHHHhHHhCCEEEEEc-chhh
Confidence 448888888888888777654311 11112221 123333344555678899999 9994
No 94
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=57.50 E-value=44 Score=30.49 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 176 ~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~ 225 (237)
-.+|+++++.++.+|+. ..++.+.-=| ++|++|+.++-..
T Consensus 216 n~~~e~l~~~v~~l~~~---------~~~~~leasG-GI~~~ni~~ya~~ 255 (277)
T TIGR01334 216 KFTPQQLHHLHERLKFF---------DHIPTLAAAG-GINPENIADYIEA 255 (277)
T ss_pred CCCHHHHHHHHHHHhcc---------CCCEEEEEEC-CCCHHHHHHHHhc
Confidence 47899999999888742 3456788888 8999999997765
No 95
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=56.50 E-value=16 Score=32.54 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=26.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChh-hHHHHHHcc
Q 026522 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVS-HVLVHLLLS 226 (237)
Q Consensus 172 GtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~-Na~~~~~~~ 226 (237)
|+|.+.+++.+++ +|+.+ +..|++||| +++.. ++++++..|
T Consensus 165 ~~g~~~~~e~I~~----v~~~~---------~~~pvivGG-GIrs~e~a~~~l~~G 206 (232)
T PRK04169 165 GAGDPVPPEMVKA----VKKAL---------DITPLIYGG-GIRSPEQARELMAAG 206 (232)
T ss_pred CCCCCCCHHHHHH----HHHhc---------CCCcEEEEC-CCCCHHHHHHHHHhC
Confidence 4566666666543 44431 113999999 99765 888866654
No 96
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=56.15 E-value=46 Score=27.64 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=35.9
Q ss_pred CeEEEEcccccccCCCCCCHH-HHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccc
Q 026522 160 NIVLAYEPVWAIGTGKVATPA-QAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFG 228 (237)
Q Consensus 160 ~iiIAYEPvWAIGtG~~as~e-~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~ 228 (237)
..+|..-|+..-+|-...++. .. +.++++... ..++||+-.| +++++|+.+++..|+.
T Consensus 117 ~dyi~~~~v~~t~~k~~~~~~~g~----~~l~~~~~~------~~~~pv~a~G-GI~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 117 ADYIGFGPIFPTPTKKDPAPPAGV----ELLREIAAT------SIDIPIVAIG-GITLENAAEVLAAGAD 175 (196)
T ss_pred CCEEEECCccCCCCCCCCCCCCCH----HHHHHHHHh------cCCCCEEEEC-CcCHHHHHHHHHcCCC
Confidence 456788888877664432121 21 223333211 1237899999 9999999998877653
No 97
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=55.78 E-value=94 Score=26.83 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=17.6
Q ss_pred ccEEEcCCCCChhhHHHHHHc
Q 026522 205 TRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 205 i~ILYGG~SV~~~Na~~~~~~ 225 (237)
.|++.+| +++|+|+.+++..
T Consensus 155 ~p~~LAG-Gi~peNv~~ai~~ 174 (210)
T PRK01222 155 KPWILAG-GLNPDNVAEAIRQ 174 (210)
T ss_pred CCEEEEC-CCCHHHHHHHHHh
Confidence 4899999 9999999998863
No 98
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=55.65 E-value=24 Score=26.02 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=34.0
Q ss_pred ccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 026522 76 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLE 133 (237)
Q Consensus 76 TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e 133 (237)
.|.--+++|++.||+.|+.|+--.+.+ ....+.|++++...+++.+
T Consensus 51 ~~~~~~~~l~~~~v~~vi~~~iG~~~~------------~~l~~~gI~v~~~~~~~i~ 96 (103)
T cd00851 51 AGGKAAEFLADEGVDVVIVGGIGPRAL------------NKLRNAGIKVYKGAEGTVE 96 (103)
T ss_pred CchHHHHHHHHcCCCEEEeCCCCcCHH------------HHHHHCCCEEEEcCCCCHH
Confidence 367889999999999999987443321 4456679999987765543
No 99
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=55.36 E-value=48 Score=29.12 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=32.0
Q ss_pred HHHHHHHHHHCCCeEEEE-eCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHH
Q 026522 110 VGDKVAYALSQGLKVIAC-VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFE 188 (237)
Q Consensus 110 V~~Kv~~al~~gl~pIvC-iGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~ 188 (237)
+.+-++.|.+.|...|++ .|-. .......+.+.+.+.++.+.+.. ....+.|++||.+-..+-...|++++.++++.
T Consensus 87 ~~~~i~~A~~lG~~~v~~~~g~~-~~~~~~~~~~~~~~~l~~l~~~a-~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~ 164 (279)
T cd00019 87 LKDEIERCEELGIRLLVFHPGSY-LGQSKEEGLKRVIEALNELIDKA-ETKGVVIALETMAGQGNEIGSSFEELKEIIDL 164 (279)
T ss_pred HHHHHHHHHHcCCCEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHhc-cCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHh
Confidence 444446666666665544 2321 10000012233333344333321 12345666666654332233445554444443
Q ss_pred H
Q 026522 189 L 189 (237)
Q Consensus 189 I 189 (237)
+
T Consensus 165 v 165 (279)
T cd00019 165 I 165 (279)
T ss_pred c
Confidence 3
No 100
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=55.17 E-value=1.6e+02 Score=26.46 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=25.2
Q ss_pred HHHHHHCCCeEE---EEeCCcHHHHhcCCcHHHHHHHHHHHHhc
Q 026522 114 VAYALSQGLKVI---ACVGETLEQREAGSTMDVVAAQTKAIADR 154 (237)
Q Consensus 114 v~~al~~gl~pI---vCiGEt~e~r~~g~~~~vl~~Ql~~~l~~ 154 (237)
+++|++.|+..| +-+-|...++..+++.+...+++...++.
T Consensus 79 v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ 122 (274)
T cd07938 79 AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAEL 122 (274)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 478888885543 22334444677788876666666555543
No 101
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=55.08 E-value=10 Score=32.87 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=27.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccc
Q 026522 171 IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFG 228 (237)
Q Consensus 171 IGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~ 228 (237)
=|||++.+-+.++ +. . ..|++..| +++|+|+.+++.+..+
T Consensus 136 GGtG~~~dw~~~~-------~~-~---------~~p~iLAG-GL~peNV~~a~~~~~~ 175 (207)
T PRK13958 136 GGTGQTYDWTILK-------HI-K---------DIPYLIAG-GINSENIQTVEQLKLS 175 (207)
T ss_pred CcCCcEeChHHhh-------hc-c---------CCCEEEEC-CCCHHHHHHHHhcCCC
Confidence 4789987654442 11 0 13788888 8999999997754333
No 102
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=55.02 E-value=1.6e+02 Score=26.33 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=31.6
Q ss_pred cCHHHHHhCCCCeEEeccc----ccc-cccccCHHHHHHHHHHHHHC-CCeEEEEeC
Q 026522 79 ISAEMLVNLEIPWVILGHS----ERR-LILNELNEFVGDKVAYALSQ-GLKVIACVG 129 (237)
Q Consensus 79 iSa~mLkd~G~~~viIGHS----ERR-~~f~Etd~~V~~Kv~~al~~-gl~pIvCiG 129 (237)
-.+..+++.|++++.++-| .+| ..++.+-+.+.+=+++..+. ++...+=++
T Consensus 106 ~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~ 162 (296)
T cd04740 106 EVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT 162 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 4677889999999999644 232 23555556665656666665 544333355
No 103
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=54.64 E-value=62 Score=28.20 Aligned_cols=13 Identities=8% Similarity=0.276 Sum_probs=8.7
Q ss_pred CCceEEEcCcccc
Q 026522 36 DVVEVVVSPPFVF 48 (237)
Q Consensus 36 ~~~~v~i~Pp~~~ 48 (237)
+.+++....|..+
T Consensus 25 ~~vel~~~~~~~~ 37 (273)
T smart00518 25 RSFQLFLGNPRSW 37 (273)
T ss_pred CEEEEECCCCCCC
Confidence 4678777777553
No 104
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=53.69 E-value=50 Score=28.96 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCcHH-HHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEccc
Q 026522 108 EFVGDKVAYALSQGLKVIACVGETLE-QREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPV 168 (237)
Q Consensus 108 ~~V~~Kv~~al~~gl~pIvCiGEt~e-~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPv 168 (237)
+.+.+-++.|.+.|...|.+-|-+.- ........+...+.++.+.+.. ....+.|+|||.
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A-~~~GV~i~iE~~ 159 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELA-SRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHH-HHhCCEEEEeec
Confidence 34556678888888887766543210 0000112233344444443321 123578999996
No 105
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=53.36 E-value=99 Score=26.87 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCcHHHHh--cCCc---HHHHHHHHHHHHhccCCCCCeEEEEccccc
Q 026522 106 LNEFVGDKVAYALSQGLKVIACVGETLEQRE--AGST---MDVVAAQTKAIADRVSSWSNIVLAYEPVWA 170 (237)
Q Consensus 106 td~~V~~Kv~~al~~gl~pIvCiGEt~e~r~--~g~~---~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWA 170 (237)
+.+...+.++.+.+.|+++++|||-...... .-.+ .+...+++...+... .++-+-|-||+.-.
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~y-glDGiDiD~E~~~~ 117 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKY-GLDGVDFDDEYSGY 117 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHh-CCCceEEeeeeccc
Confidence 4445566667888899999999995321100 0011 122223333333211 36778899998643
No 106
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=53.18 E-value=20 Score=31.55 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=27.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHcc
Q 026522 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLS 226 (237)
Q Consensus 172 GtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~ 226 (237)
|+|...+++.+ +.+|+.+ .++|++||| ++ +++.+++++..|
T Consensus 156 ~SG~~~~~e~I----~~v~~~~---------~~~pl~vGG-GIrs~e~a~~l~~aG 197 (219)
T cd02812 156 YSGAYGPPEVV----RAVKKVL---------GDTPLIVGG-GIRSGEQAKEMAEAG 197 (219)
T ss_pred CCCCcCCHHHH----HHHHHhc---------CCCCEEEeC-CCCCHHHHHHHHHcC
Confidence 66766555554 3444431 137999999 99 788888877544
No 107
>PRK08508 biotin synthase; Provisional
Probab=53.16 E-value=1.7e+02 Score=26.20 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=61.8
Q ss_pred ccccCHHHHH---hCCCCeEEeccccccccccc-----CHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHH
Q 026522 76 TGEISAEMLV---NLEIPWVILGHSERRLILNE-----LNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDV 143 (237)
Q Consensus 76 TGeiSa~mLk---d~G~~~viIGHSERR~~f~E-----td~~V~~Kv~~al~~gl~p----IvCiGEt~e~r~~g~~~~v 143 (237)
.|..+.+.|+ +.|++.+-+|.-=++.+|.. +-+.+-+-++.|.+.|+.+ |+=.||+.|+|..
T Consensus 97 ~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~------ 170 (279)
T PRK08508 97 NGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRIS------ 170 (279)
T ss_pred CCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHH------
Confidence 5767776655 55998888875555555543 2244444556789999977 7778899887631
Q ss_pred HHHHHHHHHhccCCCCCeEEEE---cccccccCCCCCCHHHHHHHHHHHHHHH
Q 026522 144 VAAQTKAIADRVSSWSNIVLAY---EPVWAIGTGKVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 144 l~~Ql~~~l~~i~~~~~iiIAY---EPvWAIGtG~~as~e~i~~~~~~IR~~l 193 (237)
... .+..+.. +.+-+-+ -|-+-.+ ..++++++.-++++..|-.+
T Consensus 171 ~l~----~lr~L~~-~svpl~~~~p~~~t~~~-~~~~~~~~~lr~iAv~Rl~l 217 (279)
T PRK08508 171 FLK----SLASLSP-HSTPINFFIPNPALPLK-APTLSADEALEIVRLAKEAL 217 (279)
T ss_pred HHH----HHHcCCC-CEEeeCCcCCCCCCCCC-CCCCCHHHHHHHHHHHHHHC
Confidence 111 2222221 1111211 2222222 23478999999998888654
No 108
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=53.12 E-value=39 Score=30.48 Aligned_cols=47 Identities=11% Similarity=0.161 Sum_probs=34.3
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccc
Q 026522 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSF 227 (237)
Q Consensus 159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~ 227 (237)
...+|...|. +|++++++++.+++ ++|+.-=| ++|++|+.++..-|.
T Consensus 202 gaDyI~ld~~---------~~e~l~~~~~~~~~------------~ipi~AiG-GI~~~ni~~~a~~Gv 248 (268)
T cd01572 202 GADIIMLDNM---------SPEELREAVALLKG------------RVLLEASG-GITLENIRAYAETGV 248 (268)
T ss_pred CCCEEEECCc---------CHHHHHHHHHHcCC------------CCcEEEEC-CCCHHHHHHHHHcCC
Confidence 3467888775 37777666655431 47899999 999999999877653
No 109
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=53.07 E-value=23 Score=30.82 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.0
Q ss_pred ccEEEcCCCC-ChhhHHHHHHcc
Q 026522 205 TRIIYGGISI-NVSHVLVHLLLS 226 (237)
Q Consensus 205 i~ILYGG~SV-~~~Na~~~~~~~ 226 (237)
+|+.||| ++ +++.+++++.-|
T Consensus 177 ~Pv~vGG-GIrs~e~a~~l~~~G 198 (205)
T TIGR01769 177 IPLIVGG-GIRSPEIAYEIVLAG 198 (205)
T ss_pred CCEEEeC-CCCCHHHHHHHHHcC
Confidence 7999999 99 788888865543
No 110
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=52.56 E-value=68 Score=28.30 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCHHHHHhCCCCeEE
Q 026522 15 GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVI 93 (237)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~vi 93 (237)
...+++.+-++...+ .+.|.+..|+......+....+ .+..+-.- ..+.+. .+|++.|+++|++.++
T Consensus 157 ~~~~eai~Ra~ay~~------AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~---~~~~~~---~~~~~~l~~lG~~~v~ 224 (243)
T cd00377 157 EGLDEAIERAKAYAE------AGADGIFVEGLKDPEEIRAFAEAPDVPLNVN---MTPGGN---LLTVAELAELGVRRVS 224 (243)
T ss_pred CCHHHHHHHHHHHHH------cCCCEEEeCCCCCHHHHHHHHhcCCCCEEEE---ecCCCC---CCCHHHHHHCCCeEEE
Confidence 356666666665544 2456666666555555554433 23333221 222222 7999999999999999
Q ss_pred ecccccc
Q 026522 94 LGHSERR 100 (237)
Q Consensus 94 IGHSERR 100 (237)
.|.+=-|
T Consensus 225 ~~~~~~~ 231 (243)
T cd00377 225 YGLALLR 231 (243)
T ss_pred EChHHHH
Confidence 9986433
No 111
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=51.77 E-value=24 Score=25.50 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=37.4
Q ss_pred CcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHH
Q 026522 72 GGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLE 133 (237)
Q Consensus 72 ~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e 133 (237)
.+...|.-.+..|.+.||+.+|.|+=-.+. . ....+.|++++...+.+.+
T Consensus 37 ~~~~~~~~~~~~l~~~~v~~li~~~iG~~~--------~----~~L~~~gI~v~~~~~~~i~ 86 (94)
T PF02579_consen 37 EGGGGGDKIAKFLAEEGVDVLICGGIGEGA--------F----RALKEAGIKVYQGAGGDIE 86 (94)
T ss_dssp CSSCHSTHHHHHHHHTTESEEEESCSCHHH--------H----HHHHHTTSEEEESTSSBHH
T ss_pred cccccchhHHHHHHHcCCCEEEEeCCCHHH--------H----HHHHHCCCEEEEcCCCCHH
Confidence 344777888999999999999999853321 2 5566889999998666644
No 112
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=51.41 E-value=1.1e+02 Score=28.32 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=32.6
Q ss_pred ccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHH
Q 026522 78 EISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQ 134 (237)
Q Consensus 78 eiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~ 134 (237)
-..+..|.++|++++ --|||.+-..|....+..|. =.|++|==.+++|
T Consensus 86 ~~Ea~~L~~~GvDiI--D~Te~lrpad~~~~~~K~~f-------~~~fmad~~~l~E 133 (293)
T PRK04180 86 FVEAQILEALGVDYI--DESEVLTPADEEYHIDKWDF-------TVPFVCGARNLGE 133 (293)
T ss_pred HHHHHHHHHcCCCEE--eccCCCCchHHHHHHHHHHc-------CCCEEccCCCHHH
Confidence 677899999999999 58888877555444443332 3566765555543
No 113
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=50.75 E-value=6.9 Score=34.94 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=7.8
Q ss_pred cCcccEEEcC
Q 026522 202 AAATRIIYGG 211 (237)
Q Consensus 202 a~~i~ILYGG 211 (237)
..++|||.||
T Consensus 55 rgk~PIlvGG 64 (253)
T PF01715_consen 55 RGKIPILVGG 64 (253)
T ss_dssp TT-EEEEEES
T ss_pred cCCeEEEECC
Confidence 3569999999
No 114
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=50.56 E-value=66 Score=27.58 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=23.8
Q ss_pred EEEEcccccccCCCC--CCHHHHHHHHHHHHHHHHhc
Q 026522 162 VLAYEPVWAIGTGKV--ATPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 162 iIAYEPvWAIGtG~~--as~e~i~~~~~~IR~~l~~~ 196 (237)
-||+ | |||||.- +..+-++-+.+.|++++.+.
T Consensus 130 SIAf-P--aIstG~~g~P~~~aA~i~~~~i~~~l~~~ 163 (186)
T cd02904 130 SIAF-P--SLPSGRNGFPKQTAAQLILKAISSYFVST 163 (186)
T ss_pred EEEE-C--CcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4677 7 8998876 45555677888899998764
No 115
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=50.47 E-value=54 Score=26.60 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=39.9
Q ss_pred cccCHHHHHHHHHHHHHCCCeEEEEe-C--CcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCH
Q 026522 103 LNELNEFVGDKVAYALSQGLKVIACV-G--ETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATP 179 (237)
Q Consensus 103 f~Etd~~V~~Kv~~al~~gl~pIvCi-G--Et~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~ 179 (237)
..+..+.+.+-++.|.+.|...++.- | +...+.......+.+.+-++.+.+... -..+.|++||..--.+....+.
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~-~~gv~i~lE~~~~~~~~~~~~~ 144 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAE-EYGVRIALENHPGPFSETPFSV 144 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHH-HHTSEEEEE-SSSSSSSEESSH
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhh-hhcceEEEecccCccccchhhH
Confidence 33445566666788888887777766 3 111110000122233333333333211 1247889998765444333343
Q ss_pred HHHHHHHHH
Q 026522 180 AQAQEVHFE 188 (237)
Q Consensus 180 e~i~~~~~~ 188 (237)
+++.++++.
T Consensus 145 ~~~~~~l~~ 153 (213)
T PF01261_consen 145 EEIYRLLEE 153 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 454443333
No 116
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=50.11 E-value=4.4 Score=29.60 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHH----------HHHhcCCccccCcccEEEcC
Q 026522 177 ATPAQAQEVHFELRK----------WLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 177 as~e~i~~~~~~IR~----------~l~~~~~~~~a~~i~ILYGG 211 (237)
++|++..++|..+.+ .+.++.|+.++.++-||||=
T Consensus 12 v~~~dfne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGl 56 (75)
T COG4064 12 VDPDDFNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGL 56 (75)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHH
Confidence 578888777776654 35566788889999999996
No 117
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=49.38 E-value=1.4e+02 Score=27.06 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=61.4
Q ss_pred CHHHHHhCCCCeEE-ecc----cccc-ccccc--CHHHHHHHHHHHHHCCCeEE----EEeCCcHHHHhcCCcHHHHHHH
Q 026522 80 SAEMLVNLEIPWVI-LGH----SERR-LILNE--LNEFVGDKVAYALSQGLKVI----ACVGETLEQREAGSTMDVVAAQ 147 (237)
Q Consensus 80 Sa~mLkd~G~~~vi-IGH----SERR-~~f~E--td~~V~~Kv~~al~~gl~pI----vCiGEt~e~r~~g~~~~vl~~Q 147 (237)
..+.||++|++.+. +|+ .+-| +++.. +.+..-+-++.|.+.|+.+. +=.||+.++|.. +. ..
T Consensus 109 ~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~--~l----~~ 182 (309)
T TIGR00423 109 VLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVE--HL----LR 182 (309)
T ss_pred HHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHH--HH----HH
Confidence 46789999999775 342 2323 34332 44555677799999998764 223588887742 11 12
Q ss_pred HHHHHhccCCCCCeE-EEEcccccccCC-------CCCCHHHHHHHHHHHHHHH
Q 026522 148 TKAIADRVSSWSNIV-LAYEPVWAIGTG-------KVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 148 l~~~l~~i~~~~~ii-IAYEPvWAIGtG-------~~as~e~i~~~~~~IR~~l 193 (237)
|+.+-.....+..++ +.|-|. ||. .++++++.-++++.-|=.+
T Consensus 183 lr~l~~~~~~f~~fiP~~f~~~---~t~~l~~~~~~~~~~~e~lr~iA~~Rl~l 233 (309)
T TIGR00423 183 IRKIQEKTGGFTEFIPLPFQPE---NNPYLEGEVRKGASGIDDLKVIAISRILL 233 (309)
T ss_pred HHhhchhhCCeeeEEeeeecCC---CChhhccCCCCCCCHHHHHHHHHHHHHhc
Confidence 222211111223333 466662 443 3578899988888888665
No 118
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=48.84 E-value=1.4e+02 Score=28.28 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=75.2
Q ss_pred CcEEeeeccccccC---cCcccccCHHHHHhCCCCeEEe--ccccccc-------cc-ccCHHHHHHHHHHHHHCCCeEE
Q 026522 59 GFHVAAQNCWVKKG---GAFTGEISAEMLVNLEIPWVIL--GHSERRL-------IL-NELNEFVGDKVAYALSQGLKVI 125 (237)
Q Consensus 59 ~i~igAQnv~~~~~---GA~TGeiSa~mLkd~G~~~viI--GHSERR~-------~f-~Etd~~V~~Kv~~al~~gl~pI 125 (237)
.+.+|..+++.... |.++.+-....+|+.|.++|=| |+..-+. +. .+....+.+.+..|.+.||.++
T Consensus 54 g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~ 133 (407)
T COG2730 54 GLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVL 133 (407)
T ss_pred ceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEE
Confidence 34566666655444 4457899999999999998843 3222122 22 2334467777899999999988
Q ss_pred EE--------eCCcHHHHhcCCcH-----H---HHHHHHHHHHhccCCCCCe---EEEEcccccccCCCCCCHHHHHHHH
Q 026522 126 AC--------VGETLEQREAGSTM-----D---VVAAQTKAIADRVSSWSNI---VLAYEPVWAIGTGKVATPAQAQEVH 186 (237)
Q Consensus 126 vC--------iGEt~e~r~~g~~~-----~---vl~~Ql~~~l~~i~~~~~i---iIAYEPvWAIGtG~~as~e~i~~~~ 186 (237)
+= .+.........-.. + -+.+|+..=.+ ..+.+ -++.||.+ |++....+-.. .+++
T Consensus 134 iD~H~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~---~~~~VIg~~~~NEP~~-~~~~~~w~~~~-~~A~ 208 (407)
T COG2730 134 IDLHGYPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFK---NYDTVIGFELINEPNG-IVTSETWNGGD-DEAY 208 (407)
T ss_pred EEecccCCCCCCcCcccccccccccchhHHHHHHHHHHHHHhcc---CCCceeeeeeecCCcc-cCCccccccch-HHHH
Confidence 74 33221110111011 1 12223222222 23333 37999999 77776654444 7788
Q ss_pred HHHHHHHHh
Q 026522 187 FELRKWLLA 195 (237)
Q Consensus 187 ~~IR~~l~~ 195 (237)
..||+.+.+
T Consensus 209 ~~v~~~i~~ 217 (407)
T COG2730 209 DVVRNAILS 217 (407)
T ss_pred HHHHhhhhh
Confidence 888765543
No 119
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=48.30 E-value=40 Score=28.19 Aligned_cols=88 Identities=14% Similarity=0.022 Sum_probs=51.2
Q ss_pred HHHHHhCCCCeEEeccccc-ccccccC-----------HHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHH--HHHH
Q 026522 81 AEMLVNLEIPWVILGHSER-RLILNEL-----------NEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMD--VVAA 146 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSER-R~~f~Et-----------d~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~--vl~~ 146 (237)
-.+++++|+++||+-=+== +..+.-+ +..|..-+.+|-+.||+..+=++-...=-+++.... ...+
T Consensus 26 ~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~ 105 (166)
T PF14488_consen 26 FRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNK 105 (166)
T ss_pred HHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHH
Confidence 4679999999999863221 1222223 358999999999999999997774321111222111 1112
Q ss_pred HH----HHHHhccCCCCCeEEEEccc
Q 026522 147 QT----KAIADRVSSWSNIVLAYEPV 168 (237)
Q Consensus 147 Ql----~~~l~~i~~~~~iiIAYEPv 168 (237)
|+ ...-..-+.+.--+|-||+-
T Consensus 106 ~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 106 QVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred HHHHHHHHHHcCCCCCceEEEecccC
Confidence 22 22111112366788999983
No 120
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=48.28 E-value=2.7e+02 Score=27.19 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=37.8
Q ss_pred eEEEEccccccc-CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHccc
Q 026522 161 IVLAYEPVWAIG-TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLSF 227 (237)
Q Consensus 161 iiIAYEPvWAIG-tG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~~ 227 (237)
.+++ | ..|=| ||...+..-+..+ ..+|+.+.+.++. ...+||+-.| ++ +|.-+...|.+|.
T Consensus 185 ~Ivv-e-~EAGGHtg~~~~~~Llp~i-~~lrd~v~~~~~y--~~~VpViAAG-GI~t~~~vaAAlaLGA 247 (444)
T TIGR02814 185 DICV-E-ADSGGHTDNRPLVVLLPAI-IRLRDTLMRRYGY--RKPIRVGAAG-GIGTPEAAAAAFMLGA 247 (444)
T ss_pred EEEE-e-ccCCCCCCCCcHHHHHHHH-HHHHHHHhhcccC--CCCceEEEeC-CCCCHHHHHHHHHcCC
Confidence 3444 7 57777 4555555554433 3335555544442 3468999988 87 8888888887764
No 121
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=48.02 E-value=2.1e+02 Score=25.87 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=24.8
Q ss_pred HHHHHCCCeEEEEe---CCcHHHHhcCCcHHHHHHHHHHHHhcc
Q 026522 115 AYALSQGLKVIACV---GETLEQREAGSTMDVVAAQTKAIADRV 155 (237)
Q Consensus 115 ~~al~~gl~pIvCi---GEt~e~r~~g~~~~vl~~Ql~~~l~~i 155 (237)
++|++.|+..|-.. -|....++.|++.+...+++...++..
T Consensus 86 e~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~a 129 (287)
T PRK05692 86 EAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAA 129 (287)
T ss_pred HHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 67777777654332 344455667777777666666665543
No 122
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=47.62 E-value=24 Score=28.30 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=22.3
Q ss_pred EEecccccccccccCHHHHHHHHHHHHH-CCCeEEEEe
Q 026522 92 VILGHSERRLILNELNEFVGDKVAYALS-QGLKVIACV 128 (237)
Q Consensus 92 viIGHSERR~~f~Etd~~V~~Kv~~al~-~gl~pIvCi 128 (237)
|.|||| | |..++.+++..|+ .|+.|++=-
T Consensus 2 VFIvhg-~-------~~~~~~~v~~~L~~~~~ep~i~~ 31 (125)
T PF10137_consen 2 VFIVHG-R-------DLAAAEAVERFLEKLGLEPIIWH 31 (125)
T ss_pred EEEEeC-C-------CHHHHHHHHHHHHhCCCceEEee
Confidence 789999 3 3357788888888 799998643
No 123
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=47.60 E-value=96 Score=25.69 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=35.1
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccc
Q 026522 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFG 228 (237)
Q Consensus 159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~ 228 (237)
...++.+-|++.--|-...+|--... ++++.+. ..+||+-=| +++++|+.++...|+.
T Consensus 115 g~dYv~~gpvf~T~sk~~~~~~g~~~----l~~~~~~-------~~~pv~AlG-GI~~~~i~~l~~~Ga~ 172 (180)
T PF02581_consen 115 GADYVFLGPVFPTSSKPGAPPLGLDG----LREIARA-------SPIPVYALG-GITPENIPELREAGAD 172 (180)
T ss_dssp TTSEEEEETSS--SSSSS-TTCHHHH----HHHHHHH-------TSSCEEEES-S--TTTHHHHHHTT-S
T ss_pred CCCEEEECCccCCCCCccccccCHHH----HHHHHHh-------CCCCEEEEc-CCCHHHHHHHHHcCCC
Confidence 34689999999877644444444433 3333221 237898888 8999999999888765
No 124
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=47.14 E-value=29 Score=31.80 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522 175 KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 175 ~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~ 225 (237)
...+|++++++++.+++. ..++.+.-=| +||++|+.++-..
T Consensus 216 Dn~~~e~l~~av~~~~~~---------~~~~~leaSG-GI~~~ni~~yA~t 256 (284)
T PRK06096 216 DKFSPQQATEIAQIAPSL---------APHCTLSLAG-GINLNTLKNYADC 256 (284)
T ss_pred CCCCHHHHHHHHHHhhcc---------CCCeEEEEEC-CCCHHHHHHHHhc
Confidence 346899999998877532 2356788889 9999999997765
No 125
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.98 E-value=34 Score=31.20 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 178 s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
+|++++++...+|+. . ..+++.+.--| ++|++|+.++...|
T Consensus 212 ~~e~l~~~v~~l~~~----~---~~~~~~leaSG-GI~~~ni~~yA~tG 252 (278)
T PRK08385 212 TPEEIREVIEALKRE----G---LRERVKIEVSG-GITPENIEEYAKLD 252 (278)
T ss_pred CHHHHHHHHHHHHhc----C---cCCCEEEEEEC-CCCHHHHHHHHHcC
Confidence 799999998887653 1 01357888889 99999999987654
No 126
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.67 E-value=31 Score=31.72 Aligned_cols=41 Identities=12% Similarity=-0.037 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 176 ~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
..+|+++++++..+|+. ..++.+.-=| ++|++|+.++-..|
T Consensus 227 nm~~e~vk~av~~~~~~---------~~~v~ieaSG-GI~~~ni~~yA~tG 267 (289)
T PRK07896 227 NFPVWQTQEAVQRRDAR---------APTVLLESSG-GLTLDTAAAYAETG 267 (289)
T ss_pred CCCHHHHHHHHHHHhcc---------CCCEEEEEEC-CCCHHHHHHHHhcC
Confidence 46799999988877653 3457788888 99999999977654
No 127
>COG3588 Fructose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=45.97 E-value=74 Score=29.58 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCcHHH----HhcCCcHHHHHHHHHHHHhccCC----CCCeEEEEcccccccCCCC--
Q 026522 107 NEFVGDKVAYALSQGLKVIACVGETLEQ----REAGSTMDVVAAQTKAIADRVSS----WSNIVLAYEPVWAIGTGKV-- 176 (237)
Q Consensus 107 d~~V~~Kv~~al~~gl~pIvCiGEt~e~----r~~g~~~~vl~~Ql~~~l~~i~~----~~~iiIAYEPvWAIGtG~~-- 176 (237)
-....+=+..|.++||.||+ |+.-. .+..+..+|++..|+..++.+.. ...++| |.--+=+|+-
T Consensus 157 v~~la~yAa~cq~aGlVPIV---EPEV~mdg~~d~~~~eeVtk~~L~k~~~~L~~~~vvm~g~~l---k~smv~~g~~~~ 230 (332)
T COG3588 157 VHQLAEYAALCQAAGLVPIV---EPEVDIDGDHDKARSEEVTKAELRKLLNALNEERVVMLGLIL---KTSMVISGKKSR 230 (332)
T ss_pred HHHHHHHHHHHHHCCCcccc---cceeeccCcccHHHHHHHHHHHHHHHHHHhhhhHhHhhcccc---cchhcccccccc
Confidence 34455666788899999998 65322 23345677888888888876642 223333 2222223433
Q ss_pred -CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 177 -ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 177 -as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
+||+++.+ ..++..+... +.+-+.|-.|-||
T Consensus 231 ~~s~~~vae--~tl~~~~~tv--P~~vpgIvfLSGG 262 (332)
T COG3588 231 EASPDEVAE--DTLYSLLSTV--PAVVPGIVFLSGG 262 (332)
T ss_pred ccchHHHHH--HHHHHHHhcC--CcccceeEEecCC
Confidence 58888754 4555555432 1222335577888
No 128
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=45.38 E-value=42 Score=28.31 Aligned_cols=47 Identities=28% Similarity=0.322 Sum_probs=38.5
Q ss_pred ccccc---CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeE
Q 026522 75 FTGEI---SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124 (237)
Q Consensus 75 ~TGei---Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~p 124 (237)
|.|.| ....+|..|+++|||-=+|=..+ .|.....-++.|.++||..
T Consensus 9 ~Qg~i~~~dw~~vk~~Gi~faiikateG~~~---~D~~~~~n~~~A~~aGl~v 58 (192)
T cd06522 9 NNGIMSVADYNKLKNYGVKAVIVKLTEGTTY---RNPYAASQIANAKAAGLKV 58 (192)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEEEcCCCCc---cChHHHHHHHHHHHCCCee
Confidence 67888 57789999999999987775433 5777888899999999953
No 129
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=44.94 E-value=2.1e+02 Score=27.05 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=59.7
Q ss_pred CcceEEEecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCccccc--
Q 026522 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEI-- 79 (237)
Q Consensus 3 r~~~i~~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGei-- 79 (237)
+++++++| .-.+.+++.+.++...+. . .+ =+++.||+..+........ .++.| ..|....|+||..-
T Consensus 197 ~~~~y~~n--it~~~~e~i~~a~~a~~~--G--ad-~vmv~~~~~g~~~~~~l~~~~~lpi---~~H~a~~ga~~~~~~~ 266 (367)
T cd08205 197 RKTLYAPN--ITGDPDELRRRADRAVEA--G--AN-ALLINPNLVGLDALRALAEDPDLPI---MAHPAFAGALSRSPDY 266 (367)
T ss_pred CcceEEEE--cCCCHHHHHHHHHHHHHc--C--CC-EEEEecccccccHHHHHHhcCCCeE---EEccCcccccccCCCC
Confidence 44666777 334457777777766542 1 12 3778888777655433322 23322 34677788888421
Q ss_pred ------CHHHHHhCCCCeEEecccccccccccCHHHHHH
Q 026522 80 ------SAEMLVNLEIPWVILGHSERRLILNELNEFVGD 112 (237)
Q Consensus 80 ------Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~ 112 (237)
=..+.+-.|++.++.|..-- -|..+++.+.+
T Consensus 267 g~~~~~~~kl~RlaGad~~~~~~~~g--k~~~~~~~~~~ 303 (367)
T cd08205 267 GSHFLLLGKLMRLAGADAVIFPGPGG--RFPFSREECLA 303 (367)
T ss_pred cCCHHHHHHHHHHcCCCccccCCCcc--CcCCCHHHHHH
Confidence 12267779999999988855 46677777643
No 130
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=44.72 E-value=1.4e+02 Score=28.67 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=61.1
Q ss_pred HHHHHhCCCCeEEecc----ccccccc--ccCHHHHHHHHHHHHHCCCeEE-EE--eCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGH----SERRLIL--NELNEFVGDKVAYALSQGLKVI-AC--VGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 81 a~mLkd~G~~~viIGH----SERR~~f--~Etd~~V~~Kv~~al~~gl~pI-vC--iGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
...|+++||+.+-+|- .|-++.+ .-+-+.+.+-++.+.++|+..| +. +|=+ |+|.+.+.+-++.+
T Consensus 154 l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP------gqt~e~~~~~l~~~ 227 (453)
T PRK09249 154 LDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLP------KQTPESFARTLEKV 227 (453)
T ss_pred HHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCC------CCCHHHHHHHHHHH
Confidence 4578899999999992 2211111 1255667778899999999433 21 2322 33444444545544
Q ss_pred HhccCCCCCeEE-EE--cccc-----cccCCCCCCHHHHHHHHHHHHHHHHhc
Q 026522 152 ADRVSSWSNIVL-AY--EPVW-----AIGTGKVATPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 152 l~~i~~~~~iiI-AY--EPvW-----AIGtG~~as~e~i~~~~~~IR~~l~~~ 196 (237)
++ +. .+.+.+ .| .|-+ .++....++.++..++...+.+.+.+.
T Consensus 228 ~~-l~-~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 278 (453)
T PRK09249 228 LE-LR-PDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEA 278 (453)
T ss_pred Hh-cC-CCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHC
Confidence 43 11 122211 11 2422 233344578888899999999988654
No 131
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=44.39 E-value=2.9e+02 Score=26.34 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=61.9
Q ss_pred HHHHHhCCCCeEEecc----c-cccccc-ccCHHHHHHHHHHHHHCCCeEE-E--EeCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGH----S-ERRLIL-NELNEFVGDKVAYALSQGLKVI-A--CVGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 81 a~mLkd~G~~~viIGH----S-ERR~~f-~Etd~~V~~Kv~~al~~gl~pI-v--CiGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
...|+++|++.+-+|= . +.+.+- +.+-+.+.+.++.+.+.|+..| + =+|=+ |+|.+.+.+-++.+
T Consensus 144 l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP------~qt~e~~~~~l~~~ 217 (430)
T PRK08208 144 LALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIP------GQTHASWMESLDQA 217 (430)
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC------CCCHHHHHHHHHHH
Confidence 4567788999999982 1 111110 2366778888999999999764 2 24533 35555566666555
Q ss_pred HhccCCCCCeE---EEEcccccccCCCCCCHHHHHHHHHHHHHHHHhc
Q 026522 152 ADRVSSWSNIV---LAYEPVWAIGTGKVATPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 152 l~~i~~~~~ii---IAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~ 196 (237)
++ +. ...+. +-.+|-=.++.-..++.+...++.+.+++.|.+.
T Consensus 218 ~~-l~-~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~ 263 (430)
T PRK08208 218 LV-YR-PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEA 263 (430)
T ss_pred Hh-CC-CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHc
Confidence 43 11 11111 1223322222212245677788999999998764
No 132
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.29 E-value=32 Score=31.24 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 177 as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
++|+++.++.+.++.. ..++.|.-=| +++|+|+.++...|
T Consensus 211 ~~~e~l~~~v~~~~~~---------~~~~~ieAsG-gIt~~ni~~ya~~G 250 (273)
T PRK05848 211 MSVEEIKEVVAYRNAN---------YPHVLLEASG-NITLENINAYAKSG 250 (273)
T ss_pred CCHHHHHHHHHHhhcc---------CCCeEEEEEC-CCCHHHHHHHHHcC
Confidence 4899998888765321 2346788888 89999999988765
No 133
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=43.79 E-value=12 Score=34.64 Aligned_cols=48 Identities=25% Similarity=0.196 Sum_probs=27.7
Q ss_pred EcccccccCCCC---------------CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC
Q 026522 165 YEPVWAIGTGKV---------------ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI 214 (237)
Q Consensus 165 YEPvWAIGtG~~---------------as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV 214 (237)
| +-=.|||+++ .+|.+.-.+..|.+..+.....-....++|||-|| |.
T Consensus 40 Y-r~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIlVGG-Tg 102 (308)
T COG0324 40 Y-RGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDALAAIDDILARGKLPILVGG-TG 102 (308)
T ss_pred c-CCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHHHHHHHHHHhCCCCcEEEcc-HH
Confidence 5 4458999998 23333344555555544433221223469999999 53
No 134
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=43.43 E-value=42 Score=29.98 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=65.9
Q ss_pred EecccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHH-----------hcC-CCcEEeeecccc-ccCcCc
Q 026522 9 GNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKS-----------SLR-PGFHVAAQNCWV-KKGGAF 75 (237)
Q Consensus 9 ~NWKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~-----------~~~-~~i~igAQnv~~-~~~GA~ 75 (237)
-||..-.+.+++.+++..+. .-.|++.--.-.|..+.. .+. +....|=+.-+. ...|+|
T Consensus 110 ~~~~~v~~~~eA~~~l~~~~--------~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPf 181 (249)
T PF02571_consen 110 DNWHYVDSYEEAAELLKELG--------GGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPF 181 (249)
T ss_pred CeEEEeCCHHHHHHHHhhcC--------CCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCC
Confidence 36777788888877775432 112333333333333321 111 111223222222 367999
Q ss_pred ccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 026522 76 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET 131 (237)
Q Consensus 76 TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt 131 (237)
+=|.--.|+++.|+++++-=-| |.+ -...|+.+|++.|+.+|+ |.-+
T Consensus 182 s~e~n~al~~~~~i~~lVtK~S------G~~--g~~eKi~AA~~lgi~viv-I~RP 228 (249)
T PF02571_consen 182 SKELNRALFRQYGIDVLVTKES------GGS--GFDEKIEAARELGIPVIV-IKRP 228 (249)
T ss_pred CHHHHHHHHHHcCCCEEEEcCC------Cch--hhHHHHHHHHHcCCeEEE-EeCC
Confidence 9999999999999999986444 333 577899999999999887 5544
No 135
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=42.55 E-value=53 Score=30.76 Aligned_cols=44 Identities=20% Similarity=0.046 Sum_probs=31.9
Q ss_pred CHHHHHhCCCCeEEeccccccccccc-------CHHHHHHHHHHHHHCCCeEEEEeC
Q 026522 80 SAEMLVNLEIPWVILGHSERRLILNE-------LNEFVGDKVAYALSQGLKVIACVG 129 (237)
Q Consensus 80 Sa~mLkd~G~~~viIGHSERR~~f~E-------td~~V~~Kv~~al~~gl~pIvCiG 129 (237)
--.+||+.|+++| |=|.+.+ +-+.+-+.+++|.++||+..|+.-
T Consensus 29 ~~~ilk~~G~N~v------RlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfH 79 (332)
T PF07745_consen 29 LFQILKDHGVNAV------RLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFH 79 (332)
T ss_dssp HHHHHHHTT--EE------EEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHhcCCCeE------EEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeec
Confidence 3578999999999 6555554 336788999999999999999985
No 136
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=42.24 E-value=1.2e+02 Score=26.06 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCc
Q 026522 108 EFVGDKVAYALSQGLKVIACVGET 131 (237)
Q Consensus 108 ~~V~~Kv~~al~~gl~pIvCiGEt 131 (237)
+.+.+-++.|.++||.+|+++=..
T Consensus 62 ~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 62 ARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHHHHHhCCCeEEEEeccC
Confidence 345555699999999999998653
No 137
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=41.88 E-value=1.6e+02 Score=26.27 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCCCCCeEEEEcccc---------------cccCCCCCCHHHHHHHHHHHHHH
Q 026522 145 AAQTKAIADRVSSWSNIVLAYEPVW---------------AIGTGKVATPAQAQEVHFELRKW 192 (237)
Q Consensus 145 ~~Ql~~~l~~i~~~~~iiIAYEPvW---------------AIGtG~~as~e~i~~~~~~IR~~ 192 (237)
.++++..++.++...+.++.|.|.| .+..|..+||.++.++.+.||+.
T Consensus 147 ~~~~~~~l~~~~~~~~~~~t~H~af~Y~~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~ 209 (276)
T cd01016 147 DAYAKKKIAEIPEQQRVLVTAHDAFGYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVER 209 (276)
T ss_pred HHHHHHHHhhCchhcCeEEEecCcHHHHHHHcCCeEecCcCCCcccCCCHHHHHHHHHHHHHc
Confidence 3334444443322345678887744 44578889999999999999863
No 138
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=41.67 E-value=41 Score=28.44 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=39.1
Q ss_pred CcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeE
Q 026522 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124 (237)
Q Consensus 74 A~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~p 124 (237)
.|-|.|... +|..|+++|||-=+|...+ .|....+-++.|.++||..
T Consensus 8 ~~qg~i~~~-~~~~g~~fviiKateG~~~---~d~~~~~n~~~A~~aGl~v 54 (196)
T cd06415 8 SYQGTDLTA-YGQAGAKFAIVKISEGTNY---VNPKASAQVSSAIANGKMT 54 (196)
T ss_pred hcCCcccHH-HHhCCCcEEEEEEcCCCcc---CCccHHHHHHHHHHCCCee
Confidence 367888876 9999999999999988755 5667888889999999854
No 139
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=41.63 E-value=2.5e+02 Score=24.87 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=74.2
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEE--EeCCcHHHHhcCCcHHHHHHHHHHHHhccCCC
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA--CVGETLEQREAGSTMDVVAAQTKAIADRVSSW 158 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv--CiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~ 158 (237)
.+.+.+.|++++-+ |.| ..+.+.+=++...+.|.++=+ |=+-+++ .++.+|+.++
T Consensus 77 i~~fa~agad~It~-H~E-------~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~-------------~i~~~l~~vD-- 133 (220)
T COG0036 77 IEAFAKAGADIITF-HAE-------ATEHIHRTIQLIKELGVKAGLVLNPATPLE-------------ALEPVLDDVD-- 133 (220)
T ss_pred HHHHHHhCCCEEEE-Eec-------cCcCHHHHHHHHHHcCCeEEEEECCCCCHH-------------HHHHHHhhCC--
Confidence 46788899998755 666 333444455777778888744 4444432 3445555443
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccch
Q 026522 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCFY 231 (237)
Q Consensus 159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~~ 231 (237)
-=++..-+|=. +|+.-.|+-..+ ++.+|+++.+ .+ ++.|=-=| |||.+|+.++..-|.-++-
T Consensus 134 ~VllMsVnPGf---gGQ~Fi~~~l~K-i~~lr~~~~~-----~~-~~~IeVDG-GI~~~t~~~~~~AGad~~V 195 (220)
T COG0036 134 LVLLMSVNPGF---GGQKFIPEVLEK-IRELRAMIDE-----RL-DILIEVDG-GINLETIKQLAAAGADVFV 195 (220)
T ss_pred EEEEEeECCCC---cccccCHHHHHH-HHHHHHHhcc-----cC-CeEEEEeC-CcCHHHHHHHHHcCCCEEE
Confidence 12345788833 677766666554 3445665543 12 57888899 9999999999887766553
No 140
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=41.32 E-value=57 Score=24.86 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccc
Q 026522 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSF 227 (237)
Q Consensus 176 ~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~ 227 (237)
+...+.+.+..+.+|+. + .++++|+.|| ..-..+...+..+|+
T Consensus 61 ~~~~~~~~~~i~~l~~~-----~---~~~~~i~vGG-~~~~~~~~~~~~~G~ 103 (119)
T cd02067 61 TTHMTLMKEVIEELKEA-----G---LDDIPVLVGG-AIVTRDFKFLKEIGV 103 (119)
T ss_pred cccHHHHHHHHHHHHHc-----C---CCCCeEEEEC-CCCChhHHHHHHcCC
Confidence 34556666666666652 1 1268999999 776665566666664
No 141
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=41.07 E-value=8.2 Score=28.14 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 180 e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
+.+++-++|.-..+.++.|++++.++-||||-
T Consensus 22 d~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~ 53 (70)
T PF04210_consen 22 DEIEEKVEFTNAEIAQRAGKKIGRDIGILYGL 53 (70)
T ss_pred HHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHH
Confidence 34445555555567778888899999999997
No 142
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=41.05 E-value=3e+02 Score=25.87 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=28.9
Q ss_pred HHHHHHCCCeE---EEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc
Q 026522 114 VAYALSQGLKV---IACVGETLEQREAGSTMDVVAAQTKAIADRV 155 (237)
Q Consensus 114 v~~al~~gl~p---IvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i 155 (237)
+++|++.|... .+.+-|...+++.+.+.+...+++..+++..
T Consensus 127 ie~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~A 171 (347)
T PLN02746 127 FEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAA 171 (347)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 46788887663 3445566667778888888888777666543
No 143
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.88 E-value=1.7e+02 Score=26.27 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHH-------HHHHhccCCCCCeEEEEcccc---------
Q 026522 106 LNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-------KAIADRVSSWSNIVLAYEPVW--------- 169 (237)
Q Consensus 106 td~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql-------~~~l~~i~~~~~iiIAYEPvW--------- 169 (237)
.|..-..++..++...|.-+. -+..+.++++ .+.+.++| +..++.+ .++.++.|.|.|
T Consensus 125 ldp~n~~~~a~~I~~~L~~~d--P~~~~~y~~N--~~~~~~~L~~l~~~~~~~~~~~--~~~~~v~~H~af~Yl~~~~gl 198 (286)
T cd01019 125 LSPENAAEVAQAVAEKLSALD--PDNAATYAAN--LEAFNARLAELDATIKERLAPV--KTKPFFVFHDAYGYFEKRYGL 198 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHHC--chhHHHHHHH--HHHHHHHHHHHHHHHHHHhhcc--CCCeEEEecccHHHHHHHcCC
Confidence 344455566666655554432 2333333322 22233333 3333322 245678899987
Q ss_pred ------cccCCCCCCHHHHHHHHHHHHH
Q 026522 170 ------AIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 170 ------AIGtG~~as~e~i~~~~~~IR~ 191 (237)
.+.++..+||.++.++.+.||+
T Consensus 199 ~~~~~~~~~~~~eps~~~l~~l~~~ik~ 226 (286)
T cd01019 199 TQAGVFTIDPEIDPGAKRLAKIRKEIKE 226 (286)
T ss_pred ceeeeecCCCCCCCCHHHHHHHHHHHHH
Confidence 2456888999999999999986
No 144
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=40.82 E-value=1.6e+02 Score=26.18 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCCCCCeEEEEccccc---------------ccCCCCCCHHHHHHHHHHHHH
Q 026522 144 VAAQTKAIADRVSSWSNIVLAYEPVWA---------------IGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 144 l~~Ql~~~l~~i~~~~~iiIAYEPvWA---------------IGtG~~as~e~i~~~~~~IR~ 191 (237)
+.++++..++.+ .++.+++|+|.|. +.+|..+++.++.++.+.||+
T Consensus 158 l~~~~~~~~~~~--~~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~ 218 (282)
T cd01017 158 LDQEYRAKLAKA--KGKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKK 218 (282)
T ss_pred HHHHHHHHHhcc--CCCeEEEecccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHH
Confidence 344444444432 2455788998774 346888999999999999986
No 145
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.75 E-value=47 Score=26.07 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=35.9
Q ss_pred EEEEeCCcHHH------HhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcC
Q 026522 124 VIACVGETLEQ------REAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANT 197 (237)
Q Consensus 124 pIvCiGEt~e~------r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~ 197 (237)
.|+|||.++.+ -..|.+...+.+++...+.. .++.+| ++.+||.-......+++..+.+++.+....
T Consensus 2 ~~~~~Gds~~~g~~~n~g~~G~~~~~~~~~~~~~~~~---~~pd~v----vi~~G~ND~~~~~~~~~~~~~~~~~i~~i~ 74 (157)
T cd01833 2 RIMPLGDSITWGDKDHEGHSGYLIDQIAAAAADWVLA---AKPDVV----LLHLGTNDLVLNRDPDTAPDRLRALIDQMR 74 (157)
T ss_pred ceeecCCceeecCCCCCCCCCccHHHHHHHhhhcccc---CCCCEE----EEeccCcccccCCCHHHHHHHHHHHHHHHH
Confidence 37888887642 12345555555555433321 222221 367888766332222222233333332221
Q ss_pred CccccCcccEEEcC
Q 026522 198 SPEIAAATRIIYGG 211 (237)
Q Consensus 198 ~~~~a~~i~ILYGG 211 (237)
. ...+.+|+..+
T Consensus 75 ~--~~p~~~ii~~~ 86 (157)
T cd01833 75 A--ANPDVKIIVAT 86 (157)
T ss_pred H--hCCCeEEEEEe
Confidence 1 13346777765
No 146
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=40.42 E-value=38 Score=29.93 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=0.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHHccc
Q 026522 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLLLSF 227 (237)
Q Consensus 172 GtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~~~~ 227 (237)
|.|.+.+++.++.+.+...+ +||.||| ++ +++.+++++..|.
T Consensus 160 ~~g~~v~~e~i~~v~~~~~~-------------~pl~vGG-GIrs~e~a~~l~~aGA 202 (223)
T TIGR01768 160 GAPEPVPPELVAEVKKVLDK-------------ARLFVGG-GIRSVEKAREMAEAGA 202 (223)
T ss_pred CCCCCcCHHHHHHHHHHcCC-------------CCEEEec-CCCCHHHHHHHHHcCC
No 147
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=40.08 E-value=42 Score=33.00 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCcccc--------CcccEEEcCCCCChhhHHHHH
Q 026522 183 QEVHFELRKWLLANTSPEIA--------AATRIIYGGISINVSHVLVHL 223 (237)
Q Consensus 183 ~~~~~~IR~~l~~~~~~~~a--------~~i~ILYGG~SV~~~Na~~~~ 223 (237)
.++....++.|.+.||..+. .+++|+||+ |++++-+++|+
T Consensus 305 ~~l~~~~~~~L~~~FG~~ln~~G~kvL~~~v~Ii~gd-~ide~~i~~il 352 (470)
T PHA02594 305 VDIICGALETLGEIFGGTVNSKGYKVLDEHVRLIQGD-GITLERINRIL 352 (470)
T ss_pred HHHHHHHHHHHHHhcCCcccCccccccCCCeEEEEcC-CCCHHHHHHHH
Confidence 34444456667666654331 689999999 99999999987
No 148
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=39.42 E-value=50 Score=25.69 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=19.8
Q ss_pred cccEEEcCCCCChhhHHHHHHccc
Q 026522 204 ATRIIYGGISINVSHVLVHLLLSF 227 (237)
Q Consensus 204 ~i~ILYGG~SV~~~Na~~~~~~~~ 227 (237)
+++++.|| ...++-.+.+...|+
T Consensus 81 ~i~i~~GG-~~~~~~~~~~~~~G~ 103 (122)
T cd02071 81 DILVVGGG-IIPPEDYELLKEMGV 103 (122)
T ss_pred CCEEEEEC-CCCHHHHHHHHHCCC
Confidence 68999999 888888888888887
No 149
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=39.16 E-value=8.8 Score=28.52 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 182 AQEVHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 182 i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
+++-++|--..+.++.|+.+++++-||||.
T Consensus 27 iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~ 56 (77)
T PRK01026 27 IEEKVEFTNAEIFQRIGKKVGRDIGILYGL 56 (77)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Confidence 333344444456777888899999999998
No 150
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=39.01 E-value=70 Score=28.58 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=49.8
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEe-----CCcHHHH------hcCCcHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV-----GETLEQR------EAGSTMDVVAAQTK 149 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCi-----GEt~e~r------~~g~~~~vl~~Ql~ 149 (237)
..++|++|++.+=+ ...-++.+.. ..|=+.||-++--+ |...... ......+...++++
T Consensus 42 ~~l~k~~G~N~iR~------~h~p~~~~~~----~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (298)
T PF02836_consen 42 LELMKEMGFNAIRT------HHYPPSPRFY----DLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELR 111 (298)
T ss_dssp HHHHHHTT-SEEEE------TTS--SHHHH----HHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHH
T ss_pred HHHHHhcCcceEEc------ccccCcHHHH----HHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHH
Confidence 34689999999933 3345666676 88999999887433 2211000 01123455667777
Q ss_pred HHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522 150 AIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 150 ~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~ 191 (237)
..+.... .-+-||. |.+|.-. ...+.++++.+.+|+
T Consensus 112 ~~v~~~~-NHPSIi~----W~~gNE~-~~~~~~~~l~~~~k~ 147 (298)
T PF02836_consen 112 EMVRRDR-NHPSIIM----WSLGNES-DYREFLKELYDLVKK 147 (298)
T ss_dssp HHHHHHT-T-TTEEE----EEEEESS-HHHHHHHHHHHHHHH
T ss_pred HHHHcCc-CcCchhe----eecCccC-ccccchhHHHHHHHh
Confidence 7765432 2344443 7788433 334444555555554
No 151
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=38.83 E-value=1.8e+02 Score=25.29 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=26.2
Q ss_pred CeEEEEccccc---------------ccCCCCCCHHHHHHHHHHHHH
Q 026522 160 NIVLAYEPVWA---------------IGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 160 ~iiIAYEPvWA---------------IGtG~~as~e~i~~~~~~IR~ 191 (237)
+.+|+|.|.|. ++.|..+||.++.++.+.||+
T Consensus 151 ~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~ 197 (256)
T PF01297_consen 151 RPVVVYHDAFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKE 197 (256)
T ss_dssp GEEEEEESTTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHH
T ss_pred CeEEEEChHHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhh
Confidence 67788999873 578899999999999998886
No 152
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=38.32 E-value=2.3e+02 Score=23.46 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=39.7
Q ss_pred cccccCH-HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeE
Q 026522 75 FTGEISA-EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124 (237)
Q Consensus 75 ~TGeiSa-~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~p 124 (237)
|.|+|.. ..+++.|+++|||-=+|-..+ .|+....-++.|.++||..
T Consensus 8 ~qg~id~~~~~~~~g~~fviikateG~~~---~D~~f~~n~~~a~~aGl~v 55 (177)
T cd06523 8 WQGPINWDYDTLSKQLDLVIIRVQYGSNY---VDLKYKNNIKEFKKRGIPF 55 (177)
T ss_pred cCCCCCHHHHHHhCCCCEEEEEEeCCCcc---cCHHHHHHHHHHHHcCCCe
Confidence 6788988 467788999999999886554 7888999999999999865
No 153
>PRK12616 pyridoxal kinase; Reviewed
Probab=38.11 E-value=58 Score=28.83 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 026522 140 TMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 192 (237)
Q Consensus 140 ~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~ 192 (237)
..+++.+|++.+++++ |+=||=+|-..+.+.++.+.+++++.
T Consensus 58 ~~~~i~~ql~~l~~d~-----------~~~aikiG~l~s~~~i~~i~~~l~~~ 99 (270)
T PRK12616 58 DTDTIRAQLSTIVDGI-----------GVDAMKTGMLPTVDIIELAADTIKEK 99 (270)
T ss_pred CHHHHHHHHHHHHcCC-----------CCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 4678888998887643 55667778888888888877777653
No 154
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=38.11 E-value=60 Score=28.28 Aligned_cols=41 Identities=34% Similarity=0.384 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522 140 TMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 140 ~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~ 191 (237)
..+++.+||+.+++++ |+=+|.+|...+++.++.+.+++++
T Consensus 51 ~~~~~~~q~~~~~~d~-----------~~~aikiG~l~~~~~~~~i~~~~~~ 91 (254)
T TIGR00097 51 PPDFVEAQLDAVFSDI-----------PVDAAKTGMLASAEIVEAVARKLRE 91 (254)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCcCCHHHHHHHHHHHHh
Confidence 4578999999888742 4456667777777777766666654
No 155
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=37.95 E-value=27 Score=26.46 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=43.7
Q ss_pred EEEEeCCcHHHHhcCCcHHHHHHHHHH-HHh-ccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccc
Q 026522 124 VIACVGETLEQREAGSTMDVVAAQTKA-IAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEI 201 (237)
Q Consensus 124 pIvCiGEt~e~r~~g~~~~vl~~Ql~~-~l~-~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~ 201 (237)
.++.+|+..- .++..+.+.+-|.. +++ .+...+.+.|-. -.|...+..+++++.+.||+.+
T Consensus 3 A~iGiG~a~G---~~r~~~Av~~Al~spLl~~~i~~A~~vLvni------~~~~d~~l~ev~~~~~~i~~~~-------- 65 (95)
T PF12327_consen 3 AMIGIGEASG---ENRAEEAVEQALNSPLLDVDIKGAKGVLVNI------TGGPDLSLSEVNEAMEIIREKA-------- 65 (95)
T ss_dssp EEEEEEEEES---TTHHHHHHHHHHTSTTSTS-GGG-SEEEEEE------EE-TTS-HHHHHHHHHHHHHHS--------
T ss_pred EEEEEEEECC---ccHHHHHHHHHHhCccccCChHHhceEEEEE------EcCCCCCHHHHHHHHHHHHHHh--------
Confidence 3566776521 11233444444432 222 112356666644 2466689999999999999874
Q ss_pred cCcccEEEcCCCCChh
Q 026522 202 AAATRIIYGGISINVS 217 (237)
Q Consensus 202 a~~i~ILYGG~SV~~~ 217 (237)
.++..|++|- +++|+
T Consensus 66 ~~~a~ii~G~-~id~~ 80 (95)
T PF12327_consen 66 DPDANIIWGA-SIDEE 80 (95)
T ss_dssp STTSEEEEEE-EE-TT
T ss_pred hcCceEEEEE-EECCC
Confidence 3567999999 88764
No 156
>PRK08444 hypothetical protein; Provisional
Probab=37.78 E-value=3.5e+02 Score=25.37 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCceEE--EcCc--cccHHHHHHhcC---CCcEEeeeccccccCcCcccccCH----HHH
Q 026522 16 TPEEVKKIVSVLNEGQVPSSDVVEVV--VSPP--FVFLGLVKSSLR---PGFHVAAQNCWVKKGGAFTGEISA----EML 84 (237)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~v~--i~Pp--~~~L~~~~~~~~---~~i~igAQnv~~~~~GA~TGeiSa----~mL 84 (237)
+.+++.+-++...+.-. ..+-++ .-|+ +-++..+.+.++ +++.++|-........|-.--.|. ..|
T Consensus 81 s~eeI~~~a~~a~~~G~---~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~L 157 (353)
T PRK08444 81 SHEEILEIVKNSVKRGI---KEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDM 157 (353)
T ss_pred CHHHHHHHHHHHHHCCC---CEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55677666665543210 112221 1133 233444444443 357777633332222222223445 889
Q ss_pred HhCCCCeEEecc-----ccccccc---ccCHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 026522 85 VNLEIPWVILGH-----SERRLIL---NELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAAQTKAIA 152 (237)
Q Consensus 85 kd~G~~~viIGH-----SERR~~f---~Etd~~V~~Kv~~al~~gl~p----IvCiGEt~e~r~~g~~~~vl~~Ql~~~l 152 (237)
||.|.+-.--|- .+-|+.. +.+.+..-.=.+.|.+.||.. ++=.|||.++|-. ....|+.+-
T Consensus 158 keAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~------hl~~Lr~Lq 231 (353)
T PRK08444 158 LEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGHIENREHRID------HMLRLRDLQ 231 (353)
T ss_pred HHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHH------HHHHHHHhc
Confidence 999998543322 1222222 223333433347788999875 6667899988731 112222221
Q ss_pred hccCCCCCeE-EEEcccccccCC----CCCCHHHHHHHHHHHHHHH
Q 026522 153 DRVSSWSNIV-LAYEPVWAIGTG----KVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 153 ~~i~~~~~ii-IAYEPvWAIGtG----~~as~e~i~~~~~~IR~~l 193 (237)
..-.....++ +.|.|. ||. ..+++++.-++++.-|=.|
T Consensus 232 ~~t~gf~~fIp~~f~~~---~t~l~~~~~~~~~e~Lr~iAi~Rl~L 274 (353)
T PRK08444 232 DKTGGFNAFIPLVYQRE---NNYLKVEKFPSSQEILKTIAISRILL 274 (353)
T ss_pred cccCCceEEEecccCCC---CCcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 1111233444 567773 332 2478999999999888765
No 157
>PRK08999 hypothetical protein; Provisional
Probab=37.60 E-value=1.4e+02 Score=26.71 Aligned_cols=61 Identities=8% Similarity=-0.051 Sum_probs=40.7
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccch
Q 026522 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCFY 231 (237)
Q Consensus 159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~~ 231 (237)
...+|..=|+|.-.|-....+-- ...++++.. ..++||+--| +++++|+.+++..|+.|.-
T Consensus 246 ~~dyi~~gpvf~t~tk~~~~~~g----~~~~~~~~~-------~~~~Pv~AiG-GI~~~~~~~~~~~g~~gva 306 (312)
T PRK08999 246 GVDFAVLSPVQPTASHPGAAPLG----WEGFAALIA-------GVPLPVYALG-GLGPGDLEEAREHGAQGIA 306 (312)
T ss_pred CCCEEEECCCcCCCCCCCCCCCC----HHHHHHHHH-------hCCCCEEEEC-CCCHHHHHHHHHhCCCEEE
Confidence 45788999999876621111111 233444322 1248999989 9999999999999987753
No 158
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=37.40 E-value=9.4 Score=27.82 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 182 AQEVHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 182 i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
+++-+++.-..+.++.|+.++.++-||||.
T Consensus 24 iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~ 53 (70)
T TIGR01149 24 IEEKVEFVNGEVAQRIGKKVGRDIGILYGL 53 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Confidence 344444444556777888889999999998
No 159
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=37.36 E-value=17 Score=33.56 Aligned_cols=10 Identities=30% Similarity=0.488 Sum_probs=8.4
Q ss_pred cCcccEEEcC
Q 026522 202 AAATRIIYGG 211 (237)
Q Consensus 202 a~~i~ILYGG 211 (237)
...+|||.||
T Consensus 91 ~gk~PilvGG 100 (300)
T PRK14729 91 QKKIPIFVGG 100 (300)
T ss_pred CCCCEEEEeC
Confidence 3568999999
No 160
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=37.29 E-value=90 Score=23.44 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=13.3
Q ss_pred cCcccEEEcCCCCChhhHHHHH
Q 026522 202 AAATRIIYGGISINVSHVLVHL 223 (237)
Q Consensus 202 a~~i~ILYGG~SV~~~Na~~~~ 223 (237)
..+++|+-|| .--..+-++++
T Consensus 79 ~p~~~iv~GG-~~~t~~~~~~l 99 (121)
T PF02310_consen 79 NPNIPIVVGG-PHATADPEEIL 99 (121)
T ss_dssp CTTSEEEEEE-SSSGHHHHHHH
T ss_pred CCCCEEEEEC-CchhcChHHHh
Confidence 4568999999 54334444444
No 161
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=37.05 E-value=38 Score=31.47 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=30.8
Q ss_pred CHHHHHhCCCCeEEeccc-----cc---ccccccCHHHHHHHHHHHHHCCCeEEEEeC
Q 026522 80 SAEMLVNLEIPWVILGHS-----ER---RLILNELNEFVGDKVAYALSQGLKVIACVG 129 (237)
Q Consensus 80 Sa~mLkd~G~~~viIGHS-----ER---R~~f~Etd~~V~~Kv~~al~~gl~pIvCiG 129 (237)
...+++++|++.|-||.. |. +--|..-|..+ +.|.++||.+|+|+.
T Consensus 15 d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l----~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 15 DLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVL----DLAAKHGIKVILGTP 68 (374)
T ss_dssp HHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHH----HHHHCTT-EEEEEEC
T ss_pred HHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHH----HHHHhccCeEEEEec
Confidence 457899999999998862 33 23455555555 889999999999996
No 162
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=36.94 E-value=2.8e+02 Score=25.20 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=34.2
Q ss_pred HHHHHHC--CC-----eEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCC------CCeEEEEcc
Q 026522 114 VAYALSQ--GL-----KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW------SNIVLAYEP 167 (237)
Q Consensus 114 v~~al~~--gl-----~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~------~~iiIAYEP 167 (237)
++.|+++ |. ...+.+-|..-+++.+++.+...+++..++...... ..+.+-|++
T Consensus 81 ie~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~ 147 (284)
T cd07942 81 IERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSP 147 (284)
T ss_pred HHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECC
Confidence 4667766 44 334555666677788999998888888777543211 124566766
No 163
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=36.74 E-value=2.8e+02 Score=23.99 Aligned_cols=18 Identities=6% Similarity=-0.140 Sum_probs=9.0
Q ss_pred HHHHHHHHHHCCCeEEEE
Q 026522 110 VGDKVAYALSQGLKVIAC 127 (237)
Q Consensus 110 V~~Kv~~al~~gl~pIvC 127 (237)
+.+=++.|...|...|+.
T Consensus 92 ~~~~i~~a~~lGa~~i~~ 109 (275)
T PRK09856 92 IKLAMDMAKEMNAGYTLI 109 (275)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 333345555666655433
No 164
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=36.67 E-value=35 Score=21.66 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=17.6
Q ss_pred cCcccEEEcCCC------CChhhHHHHHHc
Q 026522 202 AAATRIIYGGIS------INVSHVLVHLLL 225 (237)
Q Consensus 202 a~~i~ILYGG~S------V~~~Na~~~~~~ 225 (237)
..++-|.||| . |.|+-+++|+.+
T Consensus 5 ~~qLTIfY~G-~V~Vfd~v~~~Ka~~im~l 33 (36)
T PF06200_consen 5 TAQLTIFYGG-QVCVFDDVPPDKAQEIMLL 33 (36)
T ss_pred CCcEEEEECC-EEEEeCCCCHHHHHHHHHH
Confidence 4567899999 7 456668888776
No 165
>PRK04531 acetylglutamate kinase; Provisional
Probab=36.32 E-value=77 Score=30.31 Aligned_cols=75 Identities=21% Similarity=0.148 Sum_probs=45.9
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHH-------HH----HHHHHHCCCeEEE-EeCCcHHHHhcCC----cHHHH
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVG-------DK----VAYALSQGLKVIA-CVGETLEQREAGS----TMDVV 144 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~-------~K----v~~al~~gl~pIv-CiGEt~e~r~~g~----~~~vl 144 (237)
-++|+..|+.-..+.+ +|-.-.|+-+.+. ++ ++.++++|..||+ |+|++. .|+ ..|.+
T Consensus 80 ~~~l~~~gie~~~v~G--~RVTd~~tl~vv~~~l~~vn~~lv~~I~~~L~~g~IPVlsplg~~~----~G~~~NvnaD~v 153 (398)
T PRK04531 80 DAELDAAGIEKETVNG--LRVTSPEALAIVRKVFQRSNLDLVEAVESSLRAGSIPVIASLGETP----SGQILNINADVA 153 (398)
T ss_pred HHHHHHcCCCcEEECC--EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeCcEECC----CCcEEEECHHHH
Confidence 3778888887777655 4543333322222 22 6778999999999 577652 354 45666
Q ss_pred HHHHHHHHhccCCCCCeEEEE
Q 026522 145 AAQTKAIADRVSSWSNIVLAY 165 (237)
Q Consensus 145 ~~Ql~~~l~~i~~~~~iiIAY 165 (237)
...|...|. ..++++.-
T Consensus 154 A~~LA~aL~----a~KLIflt 170 (398)
T PRK04531 154 ANELVSALQ----PYKIIFLT 170 (398)
T ss_pred HHHHHHHcC----CCEEEEEE
Confidence 777766654 24555554
No 166
>KOG4131 consensus Ngg1-interacting factor 3 protein NIF3L1 [General function prediction only]
Probab=36.27 E-value=1.2e+02 Score=27.57 Aligned_cols=93 Identities=25% Similarity=0.253 Sum_probs=44.4
Q ss_pred cccCCCHHHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcCCCcEEeeeccccccCc--C---cccccCHHHH-
Q 026522 11 WKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGG--A---FTGEISAEML- 84 (237)
Q Consensus 11 WKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~G--A---~TGeiSa~mL- 84 (237)
.||+.+ ..++++.+...+ +.++|..+.-.+.-..+ ..+.++|--=+..-.| | ||||.|--.+
T Consensus 154 ~~~~~~---~~~~l~~ik~~l----~~v~val~~g~~~~~~i-----~~V~vcAgsg~svlk~~~adly~TGEmSHH~vL 221 (272)
T KOG4131|consen 154 TKINLN---VVEILKRIKRGL----SSVRVALAVGHTLESQI-----KKVAVCAGSGSSVLKGVDADLYITGEMSHHDVL 221 (272)
T ss_pred ccCccc---HHHHHHHHHhcC----CeEEEeeccCCccccce-----eEEEEeeccCcceeccccccEEEeccccHHHHH
Confidence 456655 455666655422 24555444332221111 2345555322222222 2 8888886544
Q ss_pred --HhCCCCeEEecccccc-cccccCHHHHHHHHHHHHH
Q 026522 85 --VNLEIPWVILGHSERR-LILNELNEFVGDKVAYALS 119 (237)
Q Consensus 85 --kd~G~~~viIGHSERR-~~f~Etd~~V~~Kv~~al~ 119 (237)
+..|.+..+.+||.-- -++++ +..|+..-++
T Consensus 222 ~~~~~g~sVilc~HSNtERgfL~d----~~~kl~~~l~ 255 (272)
T KOG4131|consen 222 DAAANGISVILCEHSNTERGFLSD----LCDKLASSLE 255 (272)
T ss_pred HHHHcCCeEEEecCCCccchhHHH----HHHHHHhhCC
Confidence 3456666666776542 33333 4444444443
No 167
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=36.09 E-value=57 Score=29.32 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=35.8
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccccc
Q 026522 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGC 229 (237)
Q Consensus 160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~ 229 (237)
..+|..-| .+|+++.++.+.+|+. .++||.--| ++|++|+.++..-|.-+
T Consensus 202 aD~I~ld~---------~~~e~l~~~v~~i~~~----------~~i~i~asG-GIt~~ni~~~a~~Gad~ 251 (269)
T cd01568 202 ADIIMLDN---------MSPEELKEAVKLLKGL----------PRVLLEASG-GITLENIRAYAETGVDV 251 (269)
T ss_pred CCEEEECC---------CCHHHHHHHHHHhccC----------CCeEEEEEC-CCCHHHHHHHHHcCCCE
Confidence 35676766 4568877766666531 347899999 99999999988766443
No 168
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=36.02 E-value=60 Score=29.49 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=34.6
Q ss_pred CcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 026522 139 STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 192 (237)
Q Consensus 139 ~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~ 192 (237)
-..+++.+||++++.++ |+-|+=||.-+++|.++.+.+.++++
T Consensus 55 v~~~~v~~Ql~av~~D~-----------~v~avKtGML~~~eiie~va~~l~~~ 97 (263)
T COG0351 55 VPPEFVEAQLDAVFSDI-----------PVDAVKTGMLGSAEIIEVVAEKLKKY 97 (263)
T ss_pred CCHHHHHHHHHHHhhcC-----------CCCEEEECCcCCHHHHHHHHHHHHhc
Confidence 35689999999998754 55677789989999998888888764
No 169
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=35.75 E-value=1.2e+02 Score=26.73 Aligned_cols=81 Identities=16% Similarity=0.313 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcC-----CcHHHHHHHHHHHHhccCCCCCeEEEEcccc------------
Q 026522 107 NEFVGDKVAYALSQGLKVIACVGETLEQREAG-----STMDVVAAQTKAIADRVSSWSNIVLAYEPVW------------ 169 (237)
Q Consensus 107 d~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g-----~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvW------------ 169 (237)
|....+++..++...|.-+- -+..+.++++ +..+-+.++++..++.+ .++.+++|+|.|
T Consensus 117 dp~~~~~~a~~I~~~L~~~d--P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~--~~~~~v~~H~af~Y~~~~ygl~~~ 192 (266)
T cd01018 117 SPANAKIMAENIYEALAELD--PQNATYYQANLDALLAELDALDSEIRTILSKL--KQRAFMVYHPAWGYFARDYGLTQI 192 (266)
T ss_pred CHHHHHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEECchhHHHHHHcCCEEE
Confidence 55566666666665554432 2333333322 11223334444444432 245678999988
Q ss_pred cc-cCCCCCCHHHHHHHHHHHHH
Q 026522 170 AI-GTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 170 AI-GtG~~as~e~i~~~~~~IR~ 191 (237)
.+ +.|..+|+.++.++.+.||+
T Consensus 193 ~~~~~~~eps~~~l~~l~~~ik~ 215 (266)
T cd01018 193 PIEEEGKEPSPADLKRLIDLAKE 215 (266)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHH
Confidence 22 46778999999999999986
No 170
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=34.99 E-value=1.1e+02 Score=27.64 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=32.7
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccc
Q 026522 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSF 227 (237)
Q Consensus 160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~ 227 (237)
..+|...| .+|++++++.+.+++ .+||.-=| ++|++|+.++...|.
T Consensus 199 aDyI~ld~---------~~~e~lk~~v~~~~~------------~ipi~AsG-GI~~~ni~~~a~~Gv 244 (265)
T TIGR00078 199 ADIIMLDN---------MKPEEIKEAVQLLKG------------RVLLEASG-GITLDNLEEYAETGV 244 (265)
T ss_pred CCEEEECC---------CCHHHHHHHHHHhcC------------CCcEEEEC-CCCHHHHHHHHHcCC
Confidence 45777766 456777766655431 26888888 899999999877654
No 171
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=34.87 E-value=70 Score=29.77 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=30.0
Q ss_pred CcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 026522 139 STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 192 (237)
Q Consensus 139 ~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~ 192 (237)
-..+++.+|++.+++++ |+-||=+|.-.+.+.++.++++|+++
T Consensus 56 v~~~~i~~Ql~all~D~-----------~i~aIKiGmL~s~e~i~~v~~~l~~~ 98 (321)
T PTZ00493 56 IEEKFIVEQLDSIFADV-----------TIDVVKLGVLYSKKIISLVHNYITNM 98 (321)
T ss_pred CCHHHHHHHHHHHHhCC-----------CCCEEEECCcCCHHHHHHHHHHHHHh
Confidence 35578899999888743 55566667777777777777777554
No 172
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=34.70 E-value=1e+02 Score=27.01 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=33.4
Q ss_pred EeeeccccccCcCcccccCHHHHHhCCCCeEEeccccccc
Q 026522 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRL 101 (237)
Q Consensus 62 igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~ 101 (237)
.|.+|+.....+.+...+|++.+.+...+++++.++..+.
T Consensus 221 aG~~n~~~~~~~~~~~~vs~E~v~~~~pDvIi~~~~~~~~ 260 (319)
T COG0614 221 AGGKNIAADEEGPGGAQVSPEQILAADPDVIILTGSGGSD 260 (319)
T ss_pred hCCCCccccccCCCCCccCHHHHHhcCCCEEEEecCCCCc
Confidence 6889988776666558999999999999999999887764
No 173
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=34.58 E-value=54 Score=29.72 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.0
Q ss_pred ccEEEcCCCCChhhHHHHHHccc
Q 026522 205 TRIIYGGISINVSHVLVHLLLSF 227 (237)
Q Consensus 205 i~ILYGG~SV~~~Na~~~~~~~~ 227 (237)
++|.||| ++..+.++.+|.+|.
T Consensus 84 ~~vqvGG-GIR~e~i~~~l~~Ga 105 (262)
T PLN02446 84 GGLQVGG-GVNSENAMSYLDAGA 105 (262)
T ss_pred CCEEEeC-CccHHHHHHHHHcCC
Confidence 7999999 999999999777654
No 174
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=34.47 E-value=2.7e+02 Score=24.90 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHH----------------HHHHHHHHHCCCeEE---EEeCCcHHHHhcCCcH
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFV----------------GDKVAYALSQGLKVI---ACVGETLEQREAGSTM 141 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V----------------~~Kv~~al~~gl~pI---vCiGEt~e~r~~g~~~ 141 (237)
+.+|.++|++.+.+||.-.-.-..|..+.+ .+-++.|++.|...| +++-+..-++..|++.
T Consensus 28 ~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~ 107 (262)
T cd07948 28 AKALDAFGVDYIELTSPAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSI 107 (262)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCH
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522 142 DVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 142 ~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~ 191 (237)
+...+++...++...... |+....+-..--.+++++.++.+.+.+
T Consensus 108 ~e~~~~~~~~i~~a~~~G-----~~v~~~~eda~r~~~~~l~~~~~~~~~ 152 (262)
T cd07948 108 TEIIESAVEVIEFVKSKG-----IEVRFSSEDSFRSDLVDLLRVYRAVDK 152 (262)
T ss_pred HHHHHHHHHHHHHHHHCC-----CeEEEEEEeeCCCCHHHHHHHHHHHHH
No 175
>PRK07360 FO synthase subunit 2; Reviewed
Probab=34.28 E-value=3.2e+02 Score=25.52 Aligned_cols=58 Identities=21% Similarity=0.003 Sum_probs=38.7
Q ss_pred cCHHHHHhCCCCeEEeccccc-----c-cccc--cCHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHh
Q 026522 79 ISAEMLVNLEIPWVILGHSER-----R-LILN--ELNEFVGDKVAYALSQGLKV----IACVGETLEQRE 136 (237)
Q Consensus 79 iSa~mLkd~G~~~viIGHSER-----R-~~f~--Etd~~V~~Kv~~al~~gl~p----IvCiGEt~e~r~ 136 (237)
=....|||+|++...-+..|. | .++. .+-+.--+-++.|.+.|+.. |+=+|||.++|-
T Consensus 164 e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv 233 (371)
T PRK07360 164 EVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRI 233 (371)
T ss_pred HHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHH
Confidence 347889999998886434442 2 2333 24455567779999999964 444679888763
No 176
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=33.78 E-value=2.3e+02 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=18.8
Q ss_pred cCcccccCHHHHHh-CCCCeEEecccccccccccCHHHH
Q 026522 73 GAFTGEISAEMLVN-LEIPWVILGHSERRLILNELNEFV 110 (237)
Q Consensus 73 GA~TGeiSa~mLkd-~G~~~viIGHSERR~~f~Etd~~V 110 (237)
+.+.|.-.+++|++ +|+.|+...+. --+.+|++.+
T Consensus 233 ~~~~~~~~a~~Le~~~giP~~~~~~p---~G~~~t~~~l 268 (435)
T cd01974 233 QEYATEKTAKFLEKKCKVPVETLNMP---IGVAATDEFL 268 (435)
T ss_pred CccccHHHHHHHHHHhCCCeeecCCC---cChHHHHHHH
Confidence 33555556667665 77776655422 1233555555
No 177
>COG3370 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.18 E-value=21 Score=28.39 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=37.6
Q ss_pred CCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHH
Q 026522 89 IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ 147 (237)
Q Consensus 89 ~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Q 147 (237)
++..+.|-|||+..-+|.| .-+-+..+...|.+|..|..-- ..-|-+.+....|
T Consensus 37 VelifFGpse~~la~~~~~--~l~~l~~~~s~g~~p~AC~~va---~~~gi~d~l~~~~ 90 (113)
T COG3370 37 VELIFFGPSEKLLAKNDGD--SLKMLQELRSLGIKPLACKVVA---ENLGIEDELIFLG 90 (113)
T ss_pred eEEEEECchHHHHHhcchH--HHHHHHHHHHcCCcchHHHHHH---HhcCCcHHHHHhc
Confidence 7788999999986655554 4556688899999999998632 1234444444444
No 178
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=32.36 E-value=1.7e+02 Score=26.95 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=35.1
Q ss_pred EEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHH
Q 026522 40 VVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFV 110 (237)
Q Consensus 40 v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V 110 (237)
|.=+...-.+..+.+... +-|-+.=++- ...+..|.++|++++ --|+|.+-..|.-..+
T Consensus 48 v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~----------~~Ea~~L~eaGvDiI--DaT~r~rP~~~~~~~i 107 (283)
T cd04727 48 VARMADPKMIKEIMDAVSIPVMAKVRIGH----------FVEAQILEALGVDMI--DESEVLTPADEEHHID 107 (283)
T ss_pred eeecCCHHHHHHHHHhCCCCeEEeeehhH----------HHHHHHHHHcCCCEE--eccCCCCcHHHHHHHH
Confidence 444566667777766653 2222222211 667889999999999 5778855543333334
No 179
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.24 E-value=4.4e+02 Score=24.92 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=58.5
Q ss_pred CHHHHHhCCCCeEEe---------cccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHH
Q 026522 80 SAEMLVNLEIPWVIL---------GHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA 150 (237)
Q Consensus 80 Sa~mLkd~G~~~viI---------GHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~ 150 (237)
-++.|.+.|++++.+ +|++. +-..+.+.++. .+ .||++ |.-. |.+.. +.
T Consensus 146 ~a~~l~eaGvd~I~vhgrt~~~~h~~~~~------~~~~i~~~ik~---~~-ipVIa-G~V~-------t~e~A----~~ 203 (368)
T PRK08649 146 LAPTVVEAGVDLFVIQGTVVSAEHVSKEG------EPLNLKEFIYE---LD-VPVIV-GGCV-------TYTTA----LH 203 (368)
T ss_pred HHHHHHHCCCCEEEEeccchhhhccCCcC------CHHHHHHHHHH---CC-CCEEE-eCCC-------CHHHH----HH
Confidence 457788999999998 33332 12234333333 35 45665 5431 11111 11
Q ss_pred HHhccCCCCCeEEEEcccccccCCC-C-----CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHH
Q 026522 151 IADRVSSWSNIVLAYEPVWAIGTGK-V-----ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHL 223 (237)
Q Consensus 151 ~l~~i~~~~~iiIAYEPvWAIGtG~-~-----as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~ 223 (237)
+++ ...+-+.+.++|- ++-|+. . +...-+.++.+.-|+++.+..+ ..+||+-.| ++ ++..+...|
T Consensus 204 l~~--aGAD~V~VG~G~G-s~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~----~~vpVIAdG-GI~~~~diakAl 275 (368)
T PRK08649 204 LMR--TGAAGVLVGIGPG-AACTSRGVLGIGVPMATAIADVAAARRDYLDETGG----RYVHVIADG-GIGTSGDIAKAI 275 (368)
T ss_pred HHH--cCCCEEEECCCCC-cCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcC----CCCeEEEeC-CCCCHHHHHHHH
Confidence 221 0123456788772 122221 1 1122233333444455544332 358999888 77 667777766
Q ss_pred Hccc
Q 026522 224 LLSF 227 (237)
Q Consensus 224 ~~~~ 227 (237)
.+|.
T Consensus 276 alGA 279 (368)
T PRK08649 276 ACGA 279 (368)
T ss_pred HcCC
Confidence 6664
No 180
>PRK06256 biotin synthase; Validated
Probab=32.21 E-value=3.9e+02 Score=24.24 Aligned_cols=100 Identities=19% Similarity=0.127 Sum_probs=53.6
Q ss_pred HHHHHhCCCCeEEecc--ccc-cccc--ccCHHHHHHHHHHHHHCCCeEEEE----eCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGH--SER-RLIL--NELNEFVGDKVAYALSQGLKVIAC----VGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 81 a~mLkd~G~~~viIGH--SER-R~~f--~Etd~~V~~Kv~~al~~gl~pIvC----iGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
...|+++|++.+.+|- |++ +..+ +.+-+..-+-++.+.++|+.+... .||+.+++.. ....
T Consensus 155 l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~----------~~~~ 224 (336)
T PRK06256 155 AERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVE----------HAFF 224 (336)
T ss_pred HHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHH----------HHHH
Confidence 4567799999987752 221 1111 234455666778889999864211 4788776541 1112
Q ss_pred HhccCCCCCeEE-EEcccccccC----CCCCCHHHHHHHHHHHHHHH
Q 026522 152 ADRVSSWSNIVL-AYEPVWAIGT----GKVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 152 l~~i~~~~~iiI-AYEPvWAIGt----G~~as~e~i~~~~~~IR~~l 193 (237)
+..+. .+.+.+ -+=|. =|| -.+++++++.++++..|-.+
T Consensus 225 l~~l~-~~~v~i~~l~P~--pGT~l~~~~~~~~~e~l~~ia~~Rl~~ 268 (336)
T PRK06256 225 LKELD-ADSIPINFLNPI--PGTPLENHPELTPLECLKTIAIFRLIN 268 (336)
T ss_pred HHhCC-CCEEeecccccC--CCCCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 22221 111111 12221 133 23468888888888888654
No 181
>PTZ00413 lipoate synthase; Provisional
Probab=32.14 E-value=3.8e+02 Score=25.90 Aligned_cols=24 Identities=4% Similarity=-0.114 Sum_probs=10.9
Q ss_pred eEEEecc-cCCCHHHHHHHHHHHhc
Q 026522 6 FVGGNWK-CNGTPEEVKKIVSVLNE 29 (237)
Q Consensus 6 ~i~~NWK-mn~~~~~~~~~~~~l~~ 29 (237)
.|+..+. -...-..+..|++.+..
T Consensus 197 ~VVTSv~RDDL~D~ga~~~a~~I~~ 221 (398)
T PTZ00413 197 IVMTMVDRDDLPDGGASHVARCVEL 221 (398)
T ss_pred EEEEEEcCCCCChhhHHHHHHHHHH
Confidence 3444443 22333445555555544
No 182
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=32.14 E-value=83 Score=27.98 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=13.9
Q ss_pred CcccEEEcCCCCC-hhhHHHHHHc
Q 026522 203 AATRIIYGGISIN-VSHVLVHLLL 225 (237)
Q Consensus 203 ~~i~ILYGG~SV~-~~Na~~~~~~ 225 (237)
.++|++||| ++. ++.++++..-
T Consensus 181 ~~~~LivGG-GIrs~e~A~~~~~a 203 (230)
T PF01884_consen 181 SDIPLIVGG-GIRSPEQAREMAEA 203 (230)
T ss_dssp SSSEEEEES-S--SHHHHHHHHCT
T ss_pred CCccEEEeC-CcCCHHHHHHHHHC
Confidence 358999999 985 4556665443
No 183
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.85 E-value=1.5e+02 Score=25.88 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=62.2
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHH--------HhcCCcHHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQ--------REAGSTMDVVAAQTKAIA 152 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~--------r~~g~~~~vl~~Ql~~~l 152 (237)
++.+-++||+.|++|=+=- + |..+-+++.. +.|=++++.+.-- .. .+.+.+..-+.+++...
T Consensus 91 v~~~l~~Ga~kvvigt~a~-----~-~~~~l~~~~~--~fg~~ivvslD~~-~g~v~~~gw~~~~~~~~~~~~~~~~~~- 160 (234)
T PRK13587 91 IMDYFAAGINYCIVGTKGI-----Q-DTDWLKEMAH--TFPGRIYLSVDAY-GEDIKVNGWEEDTELNLFSFVRQLSDI- 160 (234)
T ss_pred HHHHHHCCCCEEEECchHh-----c-CHHHHHHHHH--HcCCCEEEEEEee-CCEEEecCCcccCCCCHHHHHHHHHHc-
Confidence 5667789999999986532 1 2223333332 3344577777521 11 01122222233333221
Q ss_pred hccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCCh-hhHHHHHHcc
Q 026522 153 DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINV-SHVLVHLLLS 226 (237)
Q Consensus 153 ~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~-~Na~~~~~~~ 226 (237)
.... |-|-.+-.-||..-++.+.+.++. +. .++|++++| ++.. +-+.+++.+|
T Consensus 161 ----g~~~--ii~tdi~~dGt~~G~~~~li~~l~----~~----------~~ipvi~~G-Gi~s~edi~~l~~~G 214 (234)
T PRK13587 161 ----PLGG--IIYTDIAKDGKMSGPNFELTGQLV----KA----------TTIPVIASG-GIRHQQDIQRLASLN 214 (234)
T ss_pred ----CCCE--EEEecccCcCCCCccCHHHHHHHH----Hh----------CCCCEEEeC-CCCCHHHHHHHHHcC
Confidence 1122 446677777887777666554432 21 137999999 8864 6777777654
No 184
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=31.55 E-value=82 Score=28.43 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=35.4
Q ss_pred CeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522 160 NIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 160 ~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~ 230 (237)
..+|..-|. .|+++.+..+.+|+. ..++|+.-=| +++++|+.++..-|.-++
T Consensus 204 aD~I~ld~~---------~p~~l~~~~~~~~~~---------~~~i~i~AsG-GI~~~ni~~~~~~Gvd~I 255 (272)
T cd01573 204 ADILQLDKF---------SPEELAELVPKLRSL---------APPVLLAAAG-GINIENAAAYAAAGADIL 255 (272)
T ss_pred CCEEEECCC---------CHHHHHHHHHHHhcc---------CCCceEEEEC-CCCHHHHHHHHHcCCcEE
Confidence 346777664 566666666555531 1357899888 999999999887765443
No 185
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=31.33 E-value=3.4e+02 Score=23.29 Aligned_cols=154 Identities=22% Similarity=0.212 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCceEEEcCcc------ccHHHHHHhcC---CCcEEeeeccccccCcCcccccCHHHHHh
Q 026522 16 TPEEVKKIVSVLNEGQVPSSDVVEVVVSPPF------VFLGLVKSSLR---PGFHVAAQNCWVKKGGAFTGEISAEMLVN 86 (237)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~------~~L~~~~~~~~---~~i~igAQnv~~~~~GA~TGeiSa~mLkd 86 (237)
+.++..++++.+.+.-. ..+++....|+ .....+.+.+. .+..+.+= .. +|+--.+++++
T Consensus 17 s~e~~~~i~~~L~~~GV---~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l----~~----~~~~~i~~a~~ 85 (265)
T cd03174 17 STEDKLEIAEALDEAGV---DSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQAL----VR----NREKGIERALE 85 (265)
T ss_pred CHHHHHHHHHHHHHcCC---CEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEE----cc----CchhhHHHHHh
Confidence 77888999988876422 34666555444 44444444333 12333321 11 23667899999
Q ss_pred CCCCeEEeccc--c----c---ccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCC
Q 026522 87 LEIPWVILGHS--E----R---RLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS 157 (237)
Q Consensus 87 ~G~~~viIGHS--E----R---R~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~ 157 (237)
.|++.+-+--+ + . |. -.+.-+.+.+-++.+.+.|+.+.+++-....- ..+.+.+.+.++.+.+
T Consensus 86 ~g~~~i~i~~~~s~~~~~~~~~~~-~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~---~~~~~~l~~~~~~~~~---- 157 (265)
T cd03174 86 AGVDEVRIFDSASETHSRKNLNKS-REEDLENAEEAIEAAKEAGLEVEGSLEDAFGC---KTDPEYVLEVAKALEE---- 157 (265)
T ss_pred CCcCEEEEEEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC---CCCHHHHHHHHHHHHH----
Confidence 99888876542 2 1 11 11233556677799999999999988432100 1344555555554443
Q ss_pred CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHH
Q 026522 158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 158 ~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l 193 (237)
.....|-+-+. +| .++|+++.+.++.+|+..
T Consensus 158 ~g~~~i~l~Dt----~G-~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 158 AGADEISLKDT----VG-LATPEEVAELVKALREAL 188 (265)
T ss_pred cCCCEEEechh----cC-CcCHHHHHHHHHHHHHhC
Confidence 12223333332 33 489999999999998764
No 186
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=31.23 E-value=41 Score=24.39 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=25.2
Q ss_pred cccCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 026522 103 LNELNEFVGDKVAYALSQGLKVIACVGETL 132 (237)
Q Consensus 103 f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~ 132 (237)
+..++..+.+|++.|...|..-++.||+..
T Consensus 34 ~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e 63 (94)
T PF03129_consen 34 LDDSDKSLGKQIKYADKLGIPFIIIIGEKE 63 (94)
T ss_dssp EESSSSTHHHHHHHHHHTTESEEEEEEHHH
T ss_pred EECCCCchhHHHHHHhhcCCeEEEEECchh
Confidence 334555699999999999999999999864
No 187
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=31.05 E-value=2.8e+02 Score=24.29 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=7.8
Q ss_pred HHHHHHHHHHCCCeEE
Q 026522 110 VGDKVAYALSQGLKVI 125 (237)
Q Consensus 110 V~~Kv~~al~~gl~pI 125 (237)
+.+-++.|.+.|-..|
T Consensus 96 ~~~~i~~a~~lG~~~v 111 (279)
T TIGR00542 96 MEKAIQLARDLGIRTI 111 (279)
T ss_pred HHHHHHHHHHhCCCEE
Confidence 3444455555555443
No 188
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=30.90 E-value=37 Score=31.18 Aligned_cols=28 Identities=36% Similarity=0.684 Sum_probs=22.7
Q ss_pred EEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522 163 LAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 163 IAYEPvWAIGtG~~as~e~i~~~~~~IR~ 191 (237)
=||||.|---. +-..|+++.++|.-+|.
T Consensus 264 GaYePrWfmK~-~HInPeEav~Ihkdv~a 291 (343)
T KOG3798|consen 264 GAYEPRWFMKS-QHINPEEAVEIHKDVRA 291 (343)
T ss_pred cccCchhhccc-ccCCHHHHHHHHHHHhh
Confidence 49999997644 33689999999999885
No 189
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=30.75 E-value=2.7e+02 Score=25.29 Aligned_cols=104 Identities=22% Similarity=0.207 Sum_probs=66.8
Q ss_pred EecccCCCHHHHHHHHHHHhcC--------------CCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCc
Q 026522 9 GNWKCNGTPEEVKKIVSVLNEG--------------QVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGG 73 (237)
Q Consensus 9 ~NWKmn~~~~~~~~~~~~l~~~--------------~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~G 73 (237)
-||..=.+.+++-+.+..+.+. ..+.+..+-+=+.||.-.+....+..- ..--| ...|
T Consensus 109 d~~~~V~d~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Ii-------a~~G 181 (257)
T COG2099 109 DNWIEVADIEEAAEAAKQLGRRVFLTTGRQNLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARII-------AMRG 181 (257)
T ss_pred CceEEecCHHHHHHHHhccCCcEEEecCccchHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEE-------EecC
Confidence 6888888888888877755210 001111233445565555544433221 11112 3579
Q ss_pred CcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEE
Q 026522 74 AFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA 126 (237)
Q Consensus 74 A~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIv 126 (237)
+||=|--..||.+.+|++++-=-| |++- --..|+.+|.+.|+.+|+
T Consensus 182 Pfs~~~n~all~q~~id~vItK~S------G~~G-g~~~Ki~aA~eLgi~VI~ 227 (257)
T COG2099 182 PFSEEDNKALLEQYRIDVVVTKNS------GGAG-GTYEKIEAARELGIPVIM 227 (257)
T ss_pred CcChHHHHHHHHHhCCCEEEEccC------Cccc-CcHHHHHHHHHcCCcEEE
Confidence 999999999999999999997555 2221 245699999999998876
No 190
>PRK08445 hypothetical protein; Provisional
Probab=30.63 E-value=4.5e+02 Score=24.47 Aligned_cols=134 Identities=15% Similarity=0.065 Sum_probs=77.2
Q ss_pred cCHHHHHhCCCCe-----EEeccccccccc---ccCHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHH
Q 026522 79 ISAEMLVNLEIPW-----VILGHSERRLIL---NELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAA 146 (237)
Q Consensus 79 iSa~mLkd~G~~~-----viIGHSERR~~f---~Etd~~V~~Kv~~al~~gl~p----IvCiGEt~e~r~~g~~~~vl~~ 146 (237)
=-...||++|++. ..+++.|-|+.+ .-|.+.--+-++.|.+.||.. |+=.||+.++|.. ...
T Consensus 145 e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~------~l~ 218 (348)
T PRK08445 145 EVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIE------HWE 218 (348)
T ss_pred HHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHH------HHH
Confidence 3578899999984 346666666655 445555557779999999975 5556798887741 112
Q ss_pred HHHHHHhccCCCCCeE-EEEcccccccCC--------CCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChh
Q 026522 147 QTKAIADRVSSWSNIV-LAYEPVWAIGTG--------KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVS 217 (237)
Q Consensus 147 Ql~~~l~~i~~~~~ii-IAYEPvWAIGtG--------~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~ 217 (237)
.|+.+-..-.....++ ..|-|. ||. ..+++++.-++++.-|=.+- +++=+-++ .++.+
T Consensus 219 ~lreLq~~~~g~~~fi~~~~~p~---~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~---------~~~~i~a~-~~~~g 285 (348)
T PRK08445 219 RIRDLQDETGGFRAFILWSFQPD---NTPLKEEIPEIKKQSSNRYLRLLAVSRLFLD---------NFKNIQSS-WVTQG 285 (348)
T ss_pred HHHHHHHHhCCeeEEeccccCCC---CCcccccCCCCCCCCHHHHHHHHHHHHHhCC---------CCCCccCC-CcccC
Confidence 2222221111122222 244442 332 23788988888888886541 23444556 55443
Q ss_pred hHHHHHHcccccch
Q 026522 218 HVLVHLLLSFGCFY 231 (237)
Q Consensus 218 Na~~~~~~~~~~~~ 231 (237)
---.-+.+-+||-|
T Consensus 286 ~~~~~~~L~~Gand 299 (348)
T PRK08445 286 SYIGQLALLFGAND 299 (348)
T ss_pred HHHHHHHHhcCCcc
Confidence 33234566777754
No 191
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=30.54 E-value=88 Score=28.81 Aligned_cols=50 Identities=18% Similarity=0.065 Sum_probs=33.9
Q ss_pred HHHHHhCCCCeEEe-----cccccccccccC-HHHHHHHHHHHHHCCCeEEEEeCC
Q 026522 81 AEMLVNLEIPWVIL-----GHSERRLILNEL-NEFVGDKVAYALSQGLKVIACVGE 130 (237)
Q Consensus 81 a~mLkd~G~~~viI-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiGE 130 (237)
-.++|.+|++-|.+ -|.+++-.|.-+ +..+.+=++.|.++||-+|+..|-
T Consensus 30 l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 30 LQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp HHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccc
Confidence 35678888887765 577777666644 456777889999999999998874
No 192
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=30.22 E-value=1.8e+02 Score=27.35 Aligned_cols=59 Identities=19% Similarity=0.045 Sum_probs=37.8
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccccc
Q 026522 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGC 229 (237)
Q Consensus 159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~ 229 (237)
.-.+|.+=|++.-.|-...+|-- ...++.+.. . ..+|++-=| +++++|+.+++..|+..
T Consensus 260 GaDYI~lGPvf~T~tKp~~~~~G----le~l~~~~~-~------~~iPv~AiG-GI~~~ni~~l~~~Ga~g 318 (347)
T PRK02615 260 GADYIGVGPVFPTPTKPGKAPAG----LEYLKYAAK-E------APIPWFAIG-GIDKSNIPEVLQAGAKR 318 (347)
T ss_pred CCCEEEECCCcCCCCCCCCCCCC----HHHHHHHHH-h------CCCCEEEEC-CCCHHHHHHHHHcCCcE
Confidence 34688899999876643222211 233443322 1 137888888 89999999988877654
No 193
>PRK10799 metal-binding protein; Provisional
Probab=30.21 E-value=33 Score=30.32 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
...++.||+..|-|---- .+ +..|.+.|+. ++.+|=...|+- ..+.+.+.|++.
T Consensus 180 ~~a~~~gaD~~ITGd~k~------h~------~~~A~~~gl~-li~~GH~~sE~~---~~~~la~~L~~~ 233 (247)
T PRK10799 180 DSAARFGVDAFITGEVSE------QT------IHSAREQGLH-FYAAGHHATERG---GIRALSEWLNEN 233 (247)
T ss_pred HHHHHcCCCEEEECCcch------HH------HHHHHHCCCe-EEEcCchHHHHH---HHHHHHHHHHHh
Confidence 334556888877774321 11 3567777877 666776544432 233444555443
No 194
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=30.07 E-value=4.8e+02 Score=24.63 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=65.7
Q ss_pred HHHHHhCCCCeEEec----cccccccc--ccCHHHHHHHHHHHHHCCCeEE---EEeCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILG----HSERRLIL--NELNEFVGDKVAYALSQGLKVI---ACVGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 81 a~mLkd~G~~~viIG----HSERR~~f--~Etd~~V~~Kv~~al~~gl~pI---vCiGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
.+.|++.|++.+-+| +.+-++.+ +.+-+.+.+.++.+.++|+..| +=.|=+ |+|.+-+.+-++.+
T Consensus 118 l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlP------gqt~e~~~~tl~~~ 191 (400)
T PRK07379 118 LQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLP------HQTLEDWQASLEAA 191 (400)
T ss_pred HHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC------CCCHHHHHHHHHHH
Confidence 567788999999998 33333322 2467778888899999998743 223422 34555555555555
Q ss_pred HhccCCCCCe---EEEEccc------ccccCCCCCCHHHHHHHHHHHHHHHHhc
Q 026522 152 ADRVSSWSNI---VLAYEPV------WAIGTGKVATPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 152 l~~i~~~~~i---iIAYEPv------WAIGtG~~as~e~i~~~~~~IR~~l~~~ 196 (237)
++ +. .+.+ .+..||- ...|.-..++.++..++...+++.|.+.
T Consensus 192 ~~-l~-p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~ 243 (400)
T PRK07379 192 IA-LN-PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQA 243 (400)
T ss_pred Hc-CC-CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 43 11 1111 1234441 2234444578888889999999999764
No 195
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.05 E-value=74 Score=27.42 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=18.6
Q ss_pred cccEEEcCCCCC-hhhHHHHHHcc
Q 026522 204 ATRIIYGGISIN-VSHVLVHLLLS 226 (237)
Q Consensus 204 ~i~ILYGG~SV~-~~Na~~~~~~~ 226 (237)
++||+++| +|+ ++++.+++..|
T Consensus 193 ~iPvia~G-GI~~~~di~~~~~~G 215 (241)
T PRK13585 193 DIPVIASG-GVTTLDDLRALKEAG 215 (241)
T ss_pred CCCEEEeC-CCCCHHHHHHHHHcC
Confidence 38999999 999 89999976653
No 196
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=29.51 E-value=1.7e+02 Score=28.05 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=37.8
Q ss_pred HHHHHhCCCCeEEecc---ccc-cccc--ccCHHHHHHHHHHHHHCCCeEEEEe-----CCcHHHH
Q 026522 81 AEMLVNLEIPWVILGH---SER-RLIL--NELNEFVGDKVAYALSQGLKVIACV-----GETLEQR 135 (237)
Q Consensus 81 a~mLkd~G~~~viIGH---SER-R~~f--~Etd~~V~~Kv~~al~~gl~pIvCi-----GEt~e~r 135 (237)
.+.|+++||+.+.+|- |++ .+.+ +-+-+.+.+-++.+.++|+.+...+ |||.++-
T Consensus 290 l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~ 355 (472)
T TIGR03471 290 LKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETI 355 (472)
T ss_pred HHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHH
Confidence 3557889999999996 222 2222 2355677788899999999987664 5776643
No 197
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=29.45 E-value=4.2e+02 Score=23.84 Aligned_cols=158 Identities=17% Similarity=0.147 Sum_probs=89.1
Q ss_pred ccCCCHHHHHHHHHHH-hcCCCCCCCCceEEEcC-cc---ccHHHHHHhcC-----CCcEEeeeccccccCcCcccccCH
Q 026522 12 KCNGTPEEVKKIVSVL-NEGQVPSSDVVEVVVSP-PF---VFLGLVKSSLR-----PGFHVAAQNCWVKKGGAFTGEISA 81 (237)
Q Consensus 12 Kmn~~~~~~~~~~~~l-~~~~~~~~~~~~v~i~P-p~---~~L~~~~~~~~-----~~i~igAQnv~~~~~GA~TGeiSa 81 (237)
+...+.++-.++++.| .+.-. +.+|+..++ +. -.++.+.+... .++.+.+ +.+ .+-..
T Consensus 13 ~~~~s~e~K~~i~~~L~~~~Gv---~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a----~~~-----~~~~~ 80 (280)
T cd07945 13 GVSFSPSEKLNIAKILLQELKV---DRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLG----FVD-----GDKSV 80 (280)
T ss_pred CCccCHHHHHHHHHHHHHHhCC---CEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEE----ecC-----cHHHH
Confidence 4456777778888876 44211 356766542 22 33444443211 0122221 111 13357
Q ss_pred HHHHhCCCCeEEec------ccccc--cccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 026522 82 EMLVNLEIPWVILG------HSERR--LILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD 153 (237)
Q Consensus 82 ~mLkd~G~~~viIG------HSERR--~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~ 153 (237)
+..+++|++.+-+. |.++. +...|.-+.+.+=++.|.+.|+.+.+++-..-... -...+.+.+-++.+.+
T Consensus 81 ~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~--r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 81 DWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM--RDSPDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC--cCCHHHHHHHHHHHHH
Confidence 88899999988877 77664 33445555566667899999999988885310000 1235566666655543
Q ss_pred ccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHH
Q 026522 154 RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKW 192 (237)
Q Consensus 154 ~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~ 192 (237)
. ....+.|+= |--.++|+++.+..+.+|+.
T Consensus 159 ~--G~~~i~l~D-------T~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 159 L--PIKRIMLPD-------TLGILSPFETYTYISDMVKR 188 (280)
T ss_pred c--CCCEEEecC-------CCCCCCHHHHHHHHHHHHhh
Confidence 1 122333321 33347899999999888864
No 198
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=29.43 E-value=5.1e+02 Score=24.79 Aligned_cols=106 Identities=15% Similarity=0.220 Sum_probs=62.0
Q ss_pred HHHHHhCCCCeEEec----cccccccc--ccCHHHHHHHHHHHHHCCCeEE-EE--eCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILG----HSERRLIL--NELNEFVGDKVAYALSQGLKVI-AC--VGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 81 a~mLkd~G~~~viIG----HSERR~~f--~Etd~~V~~Kv~~al~~gl~pI-vC--iGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
...|+++|++.+-|| +.+-.+.+ .-+-+.+.+-++.+.++|+..+ ++ .|=+ |+|.+.+.+-++.+
T Consensus 154 l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP------gqt~e~~~~tl~~~ 227 (455)
T TIGR00538 154 IDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLP------KQTKESFAKTLEKV 227 (455)
T ss_pred HHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCC------CCCHHHHHHHHHHH
Confidence 367788899999998 22221111 1244567777889999998522 22 2422 34555555555544
Q ss_pred HhccCCCCCeE-EE--Eccccc------ccCCCCCCHHHHHHHHHHHHHHHHh
Q 026522 152 ADRVSSWSNIV-LA--YEPVWA------IGTGKVATPAQAQEVHFELRKWLLA 195 (237)
Q Consensus 152 l~~i~~~~~ii-IA--YEPvWA------IGtG~~as~e~i~~~~~~IR~~l~~ 195 (237)
.+ +. .+.+. .. .+| |. ++....+++++..++.+.+++.+.+
T Consensus 228 ~~-l~-~~~is~y~L~~~p-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~ 277 (455)
T TIGR00538 228 AE-LN-PDRLAVFNYAHVP-WVKPAQRKIPEAALPSAEEKLDILQETIAFLTE 277 (455)
T ss_pred Hh-cC-CCEEEEecCcccc-chhHHHhcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 43 11 12221 12 245 32 3444457889999999999998865
No 199
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=29.16 E-value=2.9e+02 Score=23.85 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=56.0
Q ss_pred cccCHHHHHhCCCCeEEe--ccc-----cccc-ccccCH----HHHHHHHHHHHHCCCeEEEEe-CCcHHHHhcCCcHHH
Q 026522 77 GEISAEMLVNLEIPWVIL--GHS-----ERRL-ILNELN----EFVGDKVAYALSQGLKVIACV-GETLEQREAGSTMDV 143 (237)
Q Consensus 77 GeiSa~mLkd~G~~~viI--GHS-----ERR~-~f~Etd----~~V~~Kv~~al~~gl~pIvCi-GEt~e~r~~g~~~~v 143 (237)
=+--.++|++.|.+.+.. +++ +|+. ...+.+ +.+.+=++.|.+.|-..|.|. |-...........+.
T Consensus 42 ~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~ 121 (258)
T PRK09997 42 IEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHAT 121 (258)
T ss_pred HHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHH
Confidence 344566788999998763 332 1211 111222 335666788889999988764 321110001122344
Q ss_pred HHHHHHHHHhccCCCCCeEEEEccc-c-cccCCCCCCHHHHHHHHH
Q 026522 144 VAAQTKAIADRVSSWSNIVLAYEPV-W-AIGTGKVATPAQAQEVHF 187 (237)
Q Consensus 144 l~~Ql~~~l~~i~~~~~iiIAYEPv-W-AIGtG~~as~e~i~~~~~ 187 (237)
+.+.|+.+.+... ...+.|+|||. + ...+...-++++..++.+
T Consensus 122 ~~~~l~~l~~~a~-~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ll~ 166 (258)
T PRK09997 122 LVENLRYAANMLM-KEDILLLIEPINHFDIPGFHLTGTRQALKLID 166 (258)
T ss_pred HHHHHHHHHHHHH-HcCCEEEEEeCCCcCCCCCccCCHHHHHHHHH
Confidence 5555555433221 24688999984 2 111122245666554443
No 200
>PRK12412 pyridoxal kinase; Reviewed
Probab=29.13 E-value=1e+02 Score=27.23 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522 140 TMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 140 ~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~ 191 (237)
..+.+.+|++.+++++ |+=+|=+|-..+++.++.+.+.+++
T Consensus 56 ~~~~i~~q~~~l~~d~-----------~~~~ikiG~l~~~~~v~~i~~~~~~ 96 (268)
T PRK12412 56 PASTLKPQLETTIEGV-----------GVDALKTGMLGSVEIIEMVAETIEK 96 (268)
T ss_pred CHHHHHHHHHHHHhCC-----------CCCEEEECCCCCHHHHHHHHHHHHh
Confidence 4567788888777643 4445556666677777666666654
No 201
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.74 E-value=84 Score=29.05 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcHHH---HhcCCcHHHHHHHHHHHHhccCCCCCeE
Q 026522 110 VGDKVAYALSQGLKVIACVGETLEQ---REAGSTMDVVAAQTKAIADRVSSWSNIV 162 (237)
Q Consensus 110 V~~Kv~~al~~gl~pIvCiGEt~e~---r~~g~~~~vl~~Ql~~~l~~i~~~~~ii 162 (237)
..+=.+.|.++||.||| |+.-. -+..+.+++|.+.|..-|+.++...++.
T Consensus 160 laryA~~~q~~GLVPIV---EPEVli~~~~k~~~e~~l~~~i~~~l~~l~~~~~vm 212 (296)
T PRK05377 160 QFEVAKQILAAGLVPII---EPEVDINSPDKAEAEAILKAEILKQLDALPEDQQVM 212 (296)
T ss_pred HHHHHHHHHHcCCCceE---CCeECCCCcCHHHHHHHHHHHHHHHHhhCCCCCeEE
Confidence 55556778899999998 65311 1222455677777777777665444443
No 202
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.70 E-value=94 Score=22.22 Aligned_cols=42 Identities=24% Similarity=0.143 Sum_probs=29.6
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL 132 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~ 132 (237)
+..|++.|.+..+ -.+ +..+.+|++.|.+.|..-++.||+..
T Consensus 24 a~~Lr~~g~~v~~-d~~---------~~~l~k~i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 24 YAELQAAGVDVLL-DDR---------NERPGVKFADADLIGIPYRIVVGKKS 65 (94)
T ss_pred HHHHHHCCCEEEE-ECC---------CCCcccchhHHHhcCCCEEEEECCch
Confidence 4556666655443 221 22478899999999999999999863
No 203
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=28.66 E-value=69 Score=31.96 Aligned_cols=73 Identities=23% Similarity=0.354 Sum_probs=41.1
Q ss_pred cCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHH
Q 026522 73 GAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA 152 (237)
Q Consensus 73 GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l 152 (237)
--|-|||- ..|+-...-..++--+|=-. -.|- .| +++|++.||+||++|.-. +|...+..+|+ .|.-.++
T Consensus 79 ADFGGEVE-Rvl~MVDgvlLlVDA~EGpM--PQTr-FV---lkKAl~~gL~PIVVvNKi--Drp~Arp~~Vv-d~vfDLf 148 (603)
T COG1217 79 ADFGGEVE-RVLSMVDGVLLLVDASEGPM--PQTR-FV---LKKALALGLKPIVVINKI--DRPDARPDEVV-DEVFDLF 148 (603)
T ss_pred CCccchhh-hhhhhcceEEEEEEcccCCC--Cchh-hh---HHHHHHcCCCcEEEEeCC--CCCCCCHHHHH-HHHHHHH
Confidence 34677774 23333333444555555422 1222 23 478999999999999875 44444555554 4544454
Q ss_pred hcc
Q 026522 153 DRV 155 (237)
Q Consensus 153 ~~i 155 (237)
..+
T Consensus 149 ~~L 151 (603)
T COG1217 149 VEL 151 (603)
T ss_pred HHh
Confidence 444
No 204
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=28.55 E-value=3.2e+02 Score=23.55 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=48.6
Q ss_pred CCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCe-----EE
Q 026522 89 IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI-----VL 163 (237)
Q Consensus 89 ~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~i-----iI 163 (237)
.+.+|+.+.-+ ...+ ..+-++.+.+.|...++|-|-+... +...+..+.....+ -.
T Consensus 10 lDGTLl~~~~~--i~~~----~~~al~~~~~~g~~v~iaTGR~~~~-------------~~~~~~~l~~~~~~I~~NGa~ 70 (264)
T COG0561 10 LDGTLLDSNKT--ISPE----TKEALARLREKGVKVVLATGRPLPD-------------VLSILEELGLDGPLITFNGAL 70 (264)
T ss_pred CCCCccCCCCc--cCHH----HHHHHHHHHHCCCEEEEECCCChHH-------------HHHHHHHcCCCccEEEeCCeE
Confidence 35566665544 3333 3334478889999999999988532 22333322211111 13
Q ss_pred EEcccccccCCCCCCHHHHHHHHHHHHHH
Q 026522 164 AYEPVWAIGTGKVATPAQAQEVHFELRKW 192 (237)
Q Consensus 164 AYEPvWAIGtG~~as~e~i~~~~~~IR~~ 192 (237)
.|.| +=+=...+.+.+.++++..+.++.
T Consensus 71 i~~~-~~~i~~~~l~~~~~~~i~~~~~~~ 98 (264)
T COG0561 71 IYNG-GELLFQKPLSREDVEELLELLEDF 98 (264)
T ss_pred EecC-CcEEeeecCCHHHHHHHHHHHHhc
Confidence 3445 333345567899999888888653
No 205
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=28.46 E-value=3.4e+02 Score=24.61 Aligned_cols=82 Identities=11% Similarity=0.096 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhc--CCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHH
Q 026522 106 LNEFVGDKVAYALSQGLKVIACVGETLEQREA--GSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183 (237)
Q Consensus 106 td~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~--g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~ 183 (237)
+...+.+.++.+.+.|+++++-||--...... ....+...+.+...+... .++-+-|-+|..-.- .-++++..
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~-g~DGiDiD~E~~~~~----~~~~~~~~ 132 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEY-GFDGLDIDLESGSNP----LNATPVIT 132 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHh-CCCeEEEecccCCcc----CCcHHHHH
Confidence 45667788889999999999999853211100 011233344444444321 256677899985321 12356777
Q ss_pred HHHHHHHHH
Q 026522 184 EVHFELRKW 192 (237)
Q Consensus 184 ~~~~~IR~~ 192 (237)
....++|+.
T Consensus 133 ~~~~~lk~l 141 (312)
T cd02871 133 NLISALKQL 141 (312)
T ss_pred HHHHHHHHH
Confidence 777777764
No 206
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=28.45 E-value=51 Score=31.98 Aligned_cols=25 Identities=32% Similarity=0.177 Sum_probs=22.0
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHH
Q 026522 169 WAIGTGKVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 169 WAIGtG~~as~e~i~~~~~~IR~~l 193 (237)
-|||||.-++++++..+++.+++..
T Consensus 231 TAiGTGiNa~~~Y~~~vv~~l~evt 255 (471)
T COG1027 231 TAIGTGINAPKGYIELVVKKLAEVT 255 (471)
T ss_pred eeeccCcCCChhHHHHHHHHHHHHh
Confidence 4899999999999999998888754
No 207
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=28.36 E-value=19 Score=29.10 Aligned_cols=10 Identities=50% Similarity=1.052 Sum_probs=7.2
Q ss_pred EEecc-ccccc
Q 026522 92 VILGH-SERRL 101 (237)
Q Consensus 92 viIGH-SERR~ 101 (237)
+|||| ||+|+
T Consensus 45 IlVGHHSE~R~ 55 (126)
T PF12083_consen 45 ILVGHHSEKRH 55 (126)
T ss_pred eeccccchHHH
Confidence 67775 88874
No 208
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=27.64 E-value=2.7e+02 Score=25.52 Aligned_cols=61 Identities=15% Similarity=0.060 Sum_probs=40.4
Q ss_pred CceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEeccccccc
Q 026522 37 VVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRL 101 (237)
Q Consensus 37 ~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~ 101 (237)
+.|.+..|....+..+..... -+..+-+ |+. .|.-|+.+|.+.|+++|++.|+.|++=-|.
T Consensus 179 GAD~ifi~~~~~~~~i~~~~~~~~~Pl~~-n~~---~~~~~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 179 GADMIFPEAMTELEMYRRFADAVKVPILA-NIT---EFGATPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred CCCEEEecCCCCHHHHHHHHHhcCCCEEE-Eec---cCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 567777676666766654432 1222322 332 234588899999999999999999875544
No 209
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=27.63 E-value=1.9e+02 Score=25.03 Aligned_cols=14 Identities=7% Similarity=0.392 Sum_probs=11.1
Q ss_pred HHHHhCCCCeEEec
Q 026522 82 EMLVNLEIPWVILG 95 (237)
Q Consensus 82 ~mLkd~G~~~viIG 95 (237)
+..+.+||+++.+.
T Consensus 97 ~~a~~lGa~~i~~~ 110 (275)
T PRK09856 97 DMAKEMNAGYTLIS 110 (275)
T ss_pred HHHHHhCCCEEEEc
Confidence 46688999998774
No 210
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=27.51 E-value=12 Score=30.77 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCCcHHHHhc---C--CcHHHHHHH---------HHHHHhccCCCCCeEEEEccccccc
Q 026522 107 NEFVGDKVAYALSQGLKVIACVGETLEQREA---G--STMDVVAAQ---------TKAIADRVSSWSNIVLAYEPVWAIG 172 (237)
Q Consensus 107 d~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~---g--~~~~vl~~Q---------l~~~l~~i~~~~~iiIAYEPvWAIG 172 (237)
.+.|++++...+...+..|--... +.. + ...+....+ |+....++++.+.++|.| |+|
T Consensus 13 T~~vA~~Ia~~~gadi~eI~~~~~----Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~I~lG~-PvW--- 84 (156)
T PF12682_consen 13 TKKVAEKIAEKTGADIFEIEPVKP----YPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDTIFLGT-PVW--- 84 (156)
T ss_dssp HHHHHHHHHHCCT-EEEE-BBSTT----SSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SEEEEEE-EEE---
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC----CCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCEEEEec-hHH---
Confidence 345888888888777666643321 111 0 001111111 222233444577899999 999
Q ss_pred CCCCCCH
Q 026522 173 TGKVATP 179 (237)
Q Consensus 173 tG~~as~ 179 (237)
.|.+|.|
T Consensus 85 ~~~~~~p 91 (156)
T PF12682_consen 85 WGTPPPP 91 (156)
T ss_dssp TTEE-CH
T ss_pred cCCCCHH
Confidence 4666554
No 211
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=27.31 E-value=4.5e+02 Score=24.74 Aligned_cols=101 Identities=19% Similarity=0.054 Sum_probs=61.8
Q ss_pred HHHHHhCCCCeEEec------ccccc--cccccCHHHHHHHHHHHHHCCCeEEEEe----CCcHHHHhcCCcHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILG------HSERR--LILNELNEFVGDKVAYALSQGLKVIACV----GETLEQREAGSTMDVVAAQT 148 (237)
Q Consensus 81 a~mLkd~G~~~viIG------HSERR--~~f~Etd~~V~~Kv~~al~~gl~pIvCi----GEt~e~r~~g~~~~vl~~Ql 148 (237)
.+...+.|++.|-+. |+++. +-..|.-+.+.+=++.|.++|+.+.+++ |-..+.| -..+.+.+.+
T Consensus 127 ie~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r---~~~~~l~~~~ 203 (347)
T PLN02746 127 FEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP---VPPSKVAYVA 203 (347)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC---CCHHHHHHHH
Confidence 456778899998777 55543 2334555556678899999999986444 3221111 2456666666
Q ss_pred HHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHH
Q 026522 149 KAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 149 ~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l 193 (237)
+.+.+. ..+.+.|+= |--.++|.++.+.++.+|+.+
T Consensus 204 ~~~~~~--Gad~I~l~D-------T~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 204 KELYDM--GCYEISLGD-------TIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHHHHc--CCCEEEecC-------CcCCcCHHHHHHHHHHHHHhC
Confidence 655542 122333321 223378999999999998753
No 212
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=27.25 E-value=5e+02 Score=23.97 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=43.1
Q ss_pred EEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHH
Q 026522 40 VVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119 (237)
Q Consensus 40 v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~ 119 (237)
|.=+...-.+..+.+... ++|-+= ...| | ...+..|.++|++|+ --|||-+-..|....+ +.-.
T Consensus 50 v~R~~~p~~I~~I~~~V~--iPVig~----~kig-h--~~Ea~~L~~~GvDiI--DeTe~lrPade~~~~~----K~~f- 113 (287)
T TIGR00343 50 VARMSDPKMIKEIMDAVS--IPVMAK----VRIG-H--FVEAQILEALGVDYI--DESEVLTPADWTFHID----KKKF- 113 (287)
T ss_pred eeecCCHHHHHHHHHhCC--CCEEEE----eecc-H--HHHHHHHHHcCCCEE--EccCCCCcHHHHHHHH----HHHc-
Confidence 344455566666666553 222111 0011 1 678899999999999 6888877643322222 2222
Q ss_pred CCCeEEEEeCCcHHH
Q 026522 120 QGLKVIACVGETLEQ 134 (237)
Q Consensus 120 ~gl~pIvCiGEt~e~ 134 (237)
=.|++|==.|++|
T Consensus 114 --~vpfmad~~~l~E 126 (287)
T TIGR00343 114 --KVPFVCGARDLGE 126 (287)
T ss_pred --CCCEEccCCCHHH
Confidence 3677775555554
No 213
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=27.17 E-value=4.3e+02 Score=23.16 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=35.8
Q ss_pred HHHHHHCCCeEEEEe---CCcHHHHhcCCcHHHHHHHHHHHHhccCCC-CCeEEEEcccccccCCCCCCHHHHHHHHHHH
Q 026522 114 VAYALSQGLKVIACV---GETLEQREAGSTMDVVAAQTKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPAQAQEVHFEL 189 (237)
Q Consensus 114 v~~al~~gl~pIvCi---GEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~-~~iiIAYEPvWAIGtG~~as~e~i~~~~~~I 189 (237)
++.|++.|+.-|-.. -|..-++..|.+.+...+.+...++...+. -.+.+..| . ....+++++.++.+.+
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~--~----~~~~~~~~~~~~~~~~ 148 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE--D----ASRADPDFLIEFAEVA 148 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec--c----CCCCCHHHHHHHHHHH
Confidence 356677776644332 233334566777776666666665543221 12333322 1 1124566666555555
Q ss_pred HH
Q 026522 190 RK 191 (237)
Q Consensus 190 R~ 191 (237)
.+
T Consensus 149 ~~ 150 (259)
T cd07939 149 QE 150 (259)
T ss_pred HH
Confidence 43
No 214
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=27.15 E-value=2.6e+02 Score=24.09 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=38.6
Q ss_pred CCeEEEEcccccccCCCCC-CHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522 159 SNIVLAYEPVWAIGTGKVA-TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 159 ~~iiIAYEPvWAIGtG~~a-s~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~ 230 (237)
.-.+|.+-|+|.--|-... ++-- ...++++... ..++||+-=| +++++|+.+++..|+...
T Consensus 122 gaDYi~lgpvf~T~tK~~~~~~~G----~~~l~~~~~~------~~~~PV~AiG-GI~~~ni~~l~~~Ga~Gi 183 (211)
T PRK03512 122 RPSYIALGHVFPTQTKQMPSAPQG----LAQLARHVER------LADYPTVAIG-GISLERAPAVLATGVGSI 183 (211)
T ss_pred CCCEEEECCccCCCCCCCCCCCCC----HHHHHHHHHh------cCCCCEEEEC-CCCHHHHHHHHHcCCCEE
Confidence 3468999999987554311 1111 1222333221 1247999888 899999999998887654
No 215
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=27.11 E-value=80 Score=27.78 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=12.2
Q ss_pred ccEEEcCCCCC-hhhHHHHHHc
Q 026522 205 TRIIYGGISIN-VSHVLVHLLL 225 (237)
Q Consensus 205 i~ILYGG~SV~-~~Na~~~~~~ 225 (237)
+||++|| +|. ++.+.+++..
T Consensus 75 ~pv~~~G-Gi~s~~d~~~~~~~ 95 (254)
T TIGR00735 75 IPLTVGG-GIKSIEDVDKLLRA 95 (254)
T ss_pred CCEEEEC-CCCCHHHHHHHHHc
Confidence 5666666 666 5556665554
No 216
>PRK10850 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr; Provisional
Probab=27.11 E-value=65 Score=23.92 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=26.9
Q ss_pred CcccEEEcCCCCChhhHHHHHHcccccchhhh
Q 026522 203 AATRIIYGGISINVSHVLVHLLLSFGCFYNVQ 234 (237)
Q Consensus 203 ~~i~ILYGG~SV~~~Na~~~~~~~~~~~~~~~ 234 (237)
.++.+.+||..++..++-.++.+|..|-+.+.
T Consensus 31 s~v~l~~~~~~~~akSil~lm~Lg~~~G~~v~ 62 (85)
T PRK10850 31 SEITVTSNGKSASAKSLFKLQTLGLTQGTVVT 62 (85)
T ss_pred CEEEEEECCeEEchHhHHHHHhcCCCCCCEEE
Confidence 45888999988999999999999999877653
No 217
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=26.80 E-value=2.2e+02 Score=26.06 Aligned_cols=61 Identities=11% Similarity=0.015 Sum_probs=39.2
Q ss_pred CceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEeccccccc
Q 026522 37 VVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRL 101 (237)
Q Consensus 37 ~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGHSERR~ 101 (237)
+.|.+..|....+..+....+ -+..+- +.... |.-|+..|++.|+++|++.|+.|.+==|.
T Consensus 174 GAD~vfi~g~~~~e~i~~~~~~i~~Pl~---~n~~~-~~~~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 174 GADMIFPEALTSLEEFRQFAKAVKVPLL---ANMTE-FGKTPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred CCCEEEeCCCCCHHHHHHHHHhcCCCEE---EEecc-CCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 567777776666666654332 122221 12222 33488899999999999999999775444
No 218
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=26.77 E-value=35 Score=24.85 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=27.9
Q ss_pred cCcccEEEcCCCCChhhHHHHHHcccccchhhh
Q 026522 202 AAATRIIYGGISINVSHVLVHLLLSFGCFYNVQ 234 (237)
Q Consensus 202 a~~i~ILYGG~SV~~~Na~~~~~~~~~~~~~~~ 234 (237)
..++.|.|||.+|+..++-+++.++..|.+.++
T Consensus 30 ~~~i~i~~~~~~vdakSil~l~~L~~~~G~~i~ 62 (84)
T PF00381_consen 30 DSDITIRKGGKTVDAKSILGLMSLGAKKGDEIE 62 (84)
T ss_dssp SSEEEEEETTEEEETTSHHHHHHHTBSTTEEEE
T ss_pred CCEEEEEeCceeEecCCHHHHhhhhcCCCCEEE
Confidence 346899999999999999999999988876554
No 219
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=26.64 E-value=50 Score=26.10 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=27.0
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcH
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL 132 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~ 132 (237)
..++++.++++++.||+-++...... | ..+++-|...
T Consensus 95 ~~~~~~~~~d~vi~GHtH~~~~~~~~--------------~-~~~inpGs~~ 131 (155)
T cd00841 95 LYLAKEGGADVVLYGHTHIPVIEKIG--------------G-VLLLNPGSLS 131 (155)
T ss_pred hhhhhhcCCCEEEECcccCCccEEEC--------------C-EEEEeCCCcc
Confidence 56788999999999999887654322 1 5677778753
No 220
>PRK09936 hypothetical protein; Provisional
Probab=26.61 E-value=1.5e+02 Score=27.47 Aligned_cols=136 Identities=13% Similarity=0.040 Sum_probs=79.3
Q ss_pred ccccCHHHHHhCCCCeEEecccccc-cccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHH----h--cCCc-HHHHHHH
Q 026522 76 TGEISAEMLVNLEIPWVILGHSERR-LILNELNEFVGDKVAYALSQGLKVIACVGETLEQR----E--AGST-MDVVAAQ 147 (237)
Q Consensus 76 TGeiSa~mLkd~G~~~viIGHSERR-~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r----~--~g~~-~~vl~~Q 147 (237)
+=+-..+.+++.||+.+||=-+-== .-|++.+-.+++-+..|.+.||..+| |=..+++ . .|.+ ...+..|
T Consensus 39 qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~v--GL~~Dp~y~q~~~~d~~~~~~yl~~~ 116 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVV--GLYADPEFFMHQKQDGAALESYLNRQ 116 (296)
T ss_pred HHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEE--cccCChHHHHHHhcCchhHHHHHHHH
Confidence 3344567789999998887432100 06899999999999999999999997 7544321 1 2222 3467777
Q ss_pred HHHHHhcc---C-C----CCCeEEEEcccccccCCCC-CCHHHHHHHHHHHHHHHHhcCCccccC--cccEEEcCCCCCh
Q 026522 148 TKAIADRV---S-S----WSNIVLAYEPVWAIGTGKV-ATPAQAQEVHFELRKWLLANTSPEIAA--ATRIIYGGISINV 216 (237)
Q Consensus 148 l~~~l~~i---~-~----~~~iiIAYEPvWAIGtG~~-as~e~i~~~~~~IR~~l~~~~~~~~a~--~i~ILYGG~SV~~ 216 (237)
+...+..- . . .+--+|-||+- ... .+++.-+.....++..+..... .+. .|..-.-| -.+|
T Consensus 117 l~~~~~qa~~~~~~~~~~v~GWYiP~ElD-----d~~W~~~~rR~~L~~~L~~~~~~l~~--~~kPv~ISay~~g-~~sP 188 (296)
T PRK09936 117 LGASLQQARLWSAAWGVPVDGWYLPAELD-----DLNWRDEARRQPLLTWLNAAQRLIDV--SAKPVHISAFFAG-NMSP 188 (296)
T ss_pred HHHHHHHHHHHHhccCCCCCeEEeeeccc-----hhcccCHHHHHHHHHHHHHHHHhCCC--CCCCeEEEeeccc-CCCh
Confidence 76655422 1 1 24467777762 111 3455444455566655544321 011 24444446 5677
Q ss_pred hhHHH
Q 026522 217 SHVLV 221 (237)
Q Consensus 217 ~Na~~ 221 (237)
++...
T Consensus 189 ~~l~~ 193 (296)
T PRK09936 189 DGYRQ 193 (296)
T ss_pred HHHHH
Confidence 77754
No 221
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.57 E-value=3.1e+02 Score=23.77 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=7.5
Q ss_pred HHHHHHHHCCCeEEEE
Q 026522 112 DKVAYALSQGLKVIAC 127 (237)
Q Consensus 112 ~Kv~~al~~gl~pIvC 127 (237)
+=++.|.+.|...|..
T Consensus 98 ~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 98 KAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 3334455555554443
No 222
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=26.04 E-value=4.8e+02 Score=23.31 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=22.3
Q ss_pred cccEEEcCCCC-ChhhHHHHHHcccccchhhhh
Q 026522 204 ATRIIYGGISI-NVSHVLVHLLLSFGCFYNVQY 235 (237)
Q Consensus 204 ~i~ILYGG~SV-~~~Na~~~~~~~~~~~~~~~~ 235 (237)
++||+.-| +| +++.+.+++. .|| +.||.
T Consensus 234 ~ipvi~~G-GI~~~~da~~~l~--aGA-d~V~i 262 (301)
T PRK07259 234 DIPIIGMG-GISSAEDAIEFIM--AGA-SAVQV 262 (301)
T ss_pred CCCEEEEC-CCCCHHHHHHHHH--cCC-CceeE
Confidence 48999999 98 7999999886 454 66664
No 223
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=25.93 E-value=86 Score=29.48 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=34.7
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHH----HHHHCCCeEEEEeCCcHH
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVA----YALSQGLKVIACVGETLE 133 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~----~al~~gl~pIvCiGEt~e 133 (237)
..+|+|+|++++=+|-+.| -||.+-+.+-++ .|.++ -+.|+|=|=...
T Consensus 93 E~~Lks~GitV~RigG~nR----~ETa~~v~~~~~~~yp~af~n-~kvvvv~GwDy~ 144 (337)
T COG2247 93 ENALKSLGITVKRIGGANR----YETAEKVAKFFREDYPNAFKN-VKVVVVYGWDYA 144 (337)
T ss_pred HHHHHhCCcEEEEecCcch----HHHHHHHHHHHHhhchhhhcC-eEEEEEeccccH
Confidence 4799999999999999888 356655544443 34444 788999886643
No 224
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=25.88 E-value=3.7e+02 Score=22.00 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHC--CCeEEEEeCCcHHHHh---cC--CcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCH
Q 026522 107 NEFVGDKVAYALSQ--GLKVIACVGETLEQRE---AG--STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATP 179 (237)
Q Consensus 107 d~~V~~Kv~~al~~--gl~pIvCiGEt~e~r~---~g--~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~ 179 (237)
.+.....++.+.+. |++++++||-...... .. ...+-+.+++...+..- .++-+-|-+|.+-..+. ...
T Consensus 48 ~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~-~~DGidiD~E~~~~~~~---~~~ 123 (210)
T cd00598 48 EEPLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTY-GFDGVDIDWEYPGAADN---SDR 123 (210)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHc-CCCceEEeeeCCCCcCc---cHH
Confidence 34455666666666 9999999996422111 11 11222344444444321 36678899998643322 123
Q ss_pred HHHHHHHHHHHHHH
Q 026522 180 AQAQEVHFELRKWL 193 (237)
Q Consensus 180 e~i~~~~~~IR~~l 193 (237)
+......+.+|+.+
T Consensus 124 ~~~~~ll~~lr~~l 137 (210)
T cd00598 124 ENFITLLRELRSAL 137 (210)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444444
No 225
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=25.54 E-value=45 Score=29.76 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=17.9
Q ss_pred cccccC---HHHHHhCCCCeEEeccc
Q 026522 75 FTGEIS---AEMLVNLEIPWVILGHS 97 (237)
Q Consensus 75 ~TGeiS---a~mLkd~G~~~viIGHS 97 (237)
.|||+| +.-.++.|+..+-.||.
T Consensus 194 iTGd~~~~~~~~a~e~gi~~i~~gH~ 219 (250)
T COG0327 194 ITGDLSHHTAHDARELGLSVIDAGHY 219 (250)
T ss_pred EECCCcHHHHHHHHHCCCeEEecCch
Confidence 588888 44567788888888886
No 226
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=25.52 E-value=1.2e+02 Score=28.66 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=0.0
Q ss_pred CHHHHHhCCCCeEEecccccccccc-----cCHHHHHHHHHHHHHCCCeE----EEEeCCcHHHH
Q 026522 80 SAEMLVNLEIPWVILGHSERRLILN-----ELNEFVGDKVAYALSQGLKV----IACVGETLEQR 135 (237)
Q Consensus 80 Sa~mLkd~G~~~viIGHSERR~~f~-----Etd~~V~~Kv~~al~~gl~p----IvCiGEt~e~r 135 (237)
.++.|+|.|+++.-.++=-.|.+|. .|-+.--+=++.+.++||.+ |+=.||+.++|
T Consensus 146 q~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDr 210 (335)
T COG0502 146 QAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDR 210 (335)
T ss_pred HHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHH
No 227
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=25.41 E-value=2.8e+02 Score=24.63 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=63.3
Q ss_pred EEEcCccccHHHHHHhcC--CCcEEeeeccccc--cCcCcccccCHHHHHhCCCCeEEeccccc---ccccccCHHHHHH
Q 026522 40 VVVSPPFVFLGLVKSSLR--PGFHVAAQNCWVK--KGGAFTGEISAEMLVNLEIPWVILGHSER---RLILNELNEFVGD 112 (237)
Q Consensus 40 v~i~Pp~~~L~~~~~~~~--~~i~igAQnv~~~--~~GA~TGeiSa~mLkd~G~~~viIGHSER---R~~f~Etd~~V~~ 112 (237)
++|-|++.-..+..+..+ ..+..-- +++|. +.|.-+-.-.+++|+..|+.|+=+++.+. ..+-.+....=|.
T Consensus 4 ~vVTPTy~R~~Q~~~LtRLa~TL~lVp-~l~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~~~~~~~~~~rg~~qRn~ 82 (223)
T cd00218 4 YVVTPTYARPVQKAELTRLAHTLRLVP-PLHWIVVEDSEEKTPLVAELLRRSGLMYTHLNAKTPSDPTWLKPRGVEQRNL 82 (223)
T ss_pred EEECCCCccchhhHHHHHHHHHHhcCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceEEeccCCCCCcccCCcccHHHHHH
Confidence 567777765544444332 2233333 77774 55555667778999999999999999876 3333344444444
Q ss_pred HHHHHHHC---CCeEEEEeCCcHHHHhcCCcHHHHHHHHHH
Q 026522 113 KVAYALSQ---GLKVIACVGETLEQREAGSTMDVVAAQTKA 150 (237)
Q Consensus 113 Kv~~al~~---gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~ 150 (237)
=++-..++ .+.-||=.++.. +..---+.+|++.
T Consensus 83 AL~~ir~~~~~~~~GVVyFADDd-----N~Ysl~lF~emR~ 118 (223)
T cd00218 83 ALRWIREHLSAKLDGVVYFADDD-----NTYDLELFEEMRK 118 (223)
T ss_pred HHHHHHhccccCcceEEEEccCC-----CcccHHHHHHHhc
Confidence 44444455 677777777542 2222246666665
No 228
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=25.25 E-value=1.2e+02 Score=25.98 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=10.0
Q ss_pred CCCeEEEEcccccccC
Q 026522 158 WSNIVLAYEPVWAIGT 173 (237)
Q Consensus 158 ~~~iiIAYEPvWAIGt 173 (237)
.+.+++.| |+|=-|.
T Consensus 68 AD~ivlqf-PlwW~~~ 82 (189)
T COG2249 68 ADVIVLQF-PLWWYSM 82 (189)
T ss_pred cceEEEEc-CchhccC
Confidence 35677788 9985543
No 229
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=25.05 E-value=76 Score=23.87 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=26.4
Q ss_pred CcccEEEc-CCCCChhhHHHHHHcccccchhhh
Q 026522 203 AATRIIYG-GISINVSHVLVHLLLSFGCFYNVQ 234 (237)
Q Consensus 203 ~~i~ILYG-G~SV~~~Na~~~~~~~~~~~~~~~ 234 (237)
.++.+.|+ |..|+.+++-.++.+|..|-+.+.
T Consensus 32 s~v~l~~~~g~~~~akSil~lm~Lg~~~G~~i~ 64 (90)
T PRK10897 32 AEVLLRNDEGTEAEANSVIALLMLDSAKGRQIE 64 (90)
T ss_pred CEEEEEeCCCcEEchHhHHHHHHhCCCCCCEEE
Confidence 46888996 657999999999999999987654
No 230
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=24.99 E-value=1e+02 Score=23.71 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=46.6
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522 112 DKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 112 ~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~ 191 (237)
+|..+++.+.|.|++=||.. |-|..++ +|++..|..= .+=++-| . . -++++..++.+.|-+
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~------Glt~~vi-~ei~~aL~~h-ELIKvkv------~--~---~~~~~~~e~~~~i~~ 68 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSN------GLTEGVL-AEIEQALEHH-ELIKVKI------A--T---EDRETKTLIVEAIVR 68 (97)
T ss_pred HHHHHHhcCCCCCeEEECCC------CCCHHHH-HHHHHHHHHC-CcEEEEe------c--C---CChhHHHHHHHHHHH
Confidence 67788999999999999964 6666554 6677777531 1112222 1 1 256777777766666
Q ss_pred HHHhcCCccccCcccEEEcC
Q 026522 192 WLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 192 ~l~~~~~~~~a~~i~ILYGG 211 (237)
.....+=..+ ..+-|||==
T Consensus 69 ~~~ae~Vq~I-G~~~vlYR~ 87 (97)
T PRK10343 69 ETGACNVQVI-GKTLVLYRP 87 (97)
T ss_pred HHCCEEEeee-CcEEEEEec
Confidence 5432221111 234577755
No 231
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=24.96 E-value=79 Score=28.06 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCcc-ccCcccEEEcCCCCChhhHHHHH
Q 026522 156 SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPE-IAAATRIIYGGISINVSHVLVHL 223 (237)
Q Consensus 156 ~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~-~a~~i~ILYGG~SV~~~Na~~~~ 223 (237)
+....+.|-|-| ...++..+.+..+.+.+........+ .--.+|+.||| -..|+++.-.-
T Consensus 45 P~~~sllv~~d~-------~~~~~~~l~~~L~~~~~~~~~~~~~~~~~IeIPV~Y~~-~~GpDL~~va~ 105 (223)
T COG2049 45 PGYRSLLVIYDP-------PRLDPQELLERLRALWEEIEALEAAGIRLIEIPVVYGG-EYGPDLAEVAR 105 (223)
T ss_pred ccceeEEEEecc-------cccCHHHHHHHHHHHHhchhhhccccCCEEEEeeEeCC-CCCCCHHHHHH
Confidence 346678888866 23455555544443333322221111 11257999999 99999987543
No 232
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.95 E-value=77 Score=29.00 Aligned_cols=36 Identities=11% Similarity=-0.043 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 177 as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~ 225 (237)
.+|+++++++..+++ ...+.-=| ++|++|+.++-..
T Consensus 222 ~s~e~l~~av~~~~~------------~~~leaSG-gI~~~ni~~yA~t 257 (281)
T PRK06543 222 FSLDDLREGVELVDG------------RAIVEASG-NVNLNTVGAIAST 257 (281)
T ss_pred CCHHHHHHHHHHhCC------------CeEEEEEC-CCCHHHHHHHHhc
Confidence 689999998887752 13577778 8999999998753
No 233
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=24.89 E-value=4.3e+02 Score=22.37 Aligned_cols=115 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeC--------CcHHHHhcCCcHHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVG--------ETLEQREAGSTMDVVAAQTKAIA 152 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiG--------Et~e~r~~g~~~~vl~~Ql~~~l 152 (237)
+..|.+.||+.|++|-+=. ++...-+++.... +=..++++. ....+.......+....-.+...
T Consensus 89 ~~~~~~~Ga~~vilg~~~l------~~~~~l~ei~~~~--~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~ 160 (233)
T PRK00748 89 VEALLDAGVSRVIIGTAAV------KNPELVKEACKKF--PGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGV 160 (233)
T ss_pred HHHHHHcCCCEEEECchHH------hCHHHHHHHHHHh--CCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCC
Q ss_pred hccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCCh-hhHHHHHHcc
Q 026522 153 DRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINV-SHVLVHLLLS 226 (237)
Q Consensus 153 ~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~-~Na~~~~~~~ 226 (237)
. -|.+=.+=.-|+..-++.+.+.++.+... +|++++| ++.- +-+.+++..|
T Consensus 161 ~--------~ii~~~~~~~g~~~G~d~~~i~~l~~~~~--------------ipvia~G-Gi~~~~di~~~~~~g 212 (233)
T PRK00748 161 K--------AIIYTDISRDGTLSGPNVEATRELAAAVP--------------IPVIASG-GVSSLDDIKALKGLG 212 (233)
T ss_pred C--------EEEEeeecCcCCcCCCCHHHHHHHHHhCC--------------CCEEEeC-CCCCHHHHHHHHHcC
No 234
>PLN02840 tRNA dimethylallyltransferase
Probab=24.76 E-value=2.4e+02 Score=27.37 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=25.2
Q ss_pred eEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhc-cCCCCCeEEEEcccccccCCCCC
Q 026522 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADR-VSSWSNIVLAYEPVWAIGTGKVA 177 (237)
Q Consensus 123 ~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~-i~~~~~iiIAYEPvWAIGtG~~a 177 (237)
.+|++.|-| -.|+ .-+..+|..-+.. +-..+.+-+ | .-+.|||.++.
T Consensus 22 ~vi~I~Gpt----gsGK--Ttla~~La~~~~~~iis~Ds~qv-Y-r~~~IgTaKpt 69 (421)
T PLN02840 22 KVIVISGPT----GAGK--SRLALELAKRLNGEIISADSVQV-Y-RGLDVGSAKPS 69 (421)
T ss_pred eEEEEECCC----CCCH--HHHHHHHHHHCCCCeEeccccce-e-cceeEEcCCCC
Confidence 367778877 2344 4455666655532 111222222 4 35679999873
No 235
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=24.76 E-value=19 Score=18.18 Aligned_cols=7 Identities=57% Similarity=1.526 Sum_probs=4.9
Q ss_pred ccccccC
Q 026522 167 PVWAIGT 173 (237)
Q Consensus 167 PvWAIGt 173 (237)
|.||+|.
T Consensus 2 ~~WAvGh 8 (14)
T PF02044_consen 2 PQWAVGH 8 (14)
T ss_dssp -TCHHHC
T ss_pred Cccceee
Confidence 7899984
No 236
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=24.39 E-value=1.4e+02 Score=27.61 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=57.5
Q ss_pred ccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc
Q 026522 76 TGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV 155 (237)
Q Consensus 76 TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i 155 (237)
|-+.- ++|++.|.+.+++.|...- .|.++.+.+-++.+.++|+...+ .+---|..+...+.+.+=.+. +..+
T Consensus 209 t~el~-~~L~~~~~~~~~vsh~nh~---~Ei~~~~~~ai~~L~~aGi~v~~---qtvLl~gvnD~~~~l~~L~~~-l~~~ 280 (331)
T TIGR00238 209 TDELC-ELLASFELQLMLVTHINHC---NEITEEFAEAMKKLRTVNVTLLN---QSVLLRGVNDRAQILAKLSIA-LFKV 280 (331)
T ss_pred CHHHH-HHHHhcCCcEEEEccCCCh---HhCCHHHHHHHHHHHHcCCEEEe---ecceECCcCCCHHHHHHHHHH-Hhhc
Confidence 44433 4788999999999988653 36677788888999999986432 111111122333333222222 2211
Q ss_pred CCCCCeE-EEEcccccccCCCCCCHHHHHHHHHHHHHHH
Q 026522 156 SSWSNIV-LAYEPVWAIGTGKVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 156 ~~~~~ii-IAYEPvWAIGtG~~as~e~i~~~~~~IR~~l 193 (237)
. ..+.+ .-.-|+.- +..-..+.++..++.+.+|+.+
T Consensus 281 g-V~pyyl~~~~~~~g-~~~f~~~~~~~~~i~~~l~~~~ 317 (331)
T TIGR00238 281 G-IIPYYLHYLDKVQG-AKHFLVPDAEAAQIVKELARLT 317 (331)
T ss_pred C-eecCeecCcCCCCC-cccccCCHHHHHHHHHHHHhcC
Confidence 1 11222 12334321 1122357888888877777664
No 237
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.35 E-value=2.1e+02 Score=26.07 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 176 VATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 176 ~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
..+|+++.++.+.++ .++|+.-=| ++|++|+.++...|
T Consensus 217 ~~~~e~l~~~v~~~~------------~~i~leAsG-GIt~~ni~~~a~tG 254 (277)
T PRK05742 217 ELSLDDMREAVRLTA------------GRAKLEASG-GINESTLRVIAETG 254 (277)
T ss_pred CCCHHHHHHHHHHhC------------CCCcEEEEC-CCCHHHHHHHHHcC
Confidence 358998887765542 247888888 89999999987654
No 238
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=24.27 E-value=1.1e+02 Score=26.47 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=61.3
Q ss_pred cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCC-eEEEEeCCcHH--------HHhcCCcHHHHH
Q 026522 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL-KVIACVGETLE--------QREAGSTMDVVA 145 (237)
Q Consensus 75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl-~pIvCiGEt~e--------~r~~g~~~~vl~ 145 (237)
..-.=.++.|-+.|++.|++|=.=- ++-+.+.+ +.. +.|= ..++++.=-.. ....+.+...+.
T Consensus 82 Irs~ed~~~ll~~Ga~~Vvigt~~~-----~~~~~l~~-~~~--~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~ 153 (229)
T PF00977_consen 82 IRSIEDAERLLDAGADRVVIGTEAL-----EDPELLEE-LAE--RYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFA 153 (229)
T ss_dssp E-SHHHHHHHHHTT-SEEEESHHHH-----HCCHHHHH-HHH--HHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHH
T ss_pred cCcHHHHHHHHHhCCCEEEeChHHh-----hchhHHHH-HHH--HcCcccEEEEEEeeeceEEEecCccccCCcCHHHHH
Confidence 4434457789999999999996522 22233322 222 2232 33443321100 001123333333
Q ss_pred HHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCC-ChhhHHHHHH
Q 026522 146 AQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISI-NVSHVLVHLL 224 (237)
Q Consensus 146 ~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV-~~~Na~~~~~ 224 (237)
+++.+. ....++ |=-+-.-||+.=++.+- .+.+++.. ++|++|+| +| +++.+.++..
T Consensus 154 ~~~~~~-----g~~~ii--~tdi~~dGt~~G~d~~~----~~~l~~~~----------~~~viasG-Gv~~~~Dl~~l~~ 211 (229)
T PF00977_consen 154 KRLEEL-----GAGEII--LTDIDRDGTMQGPDLEL----LKQLAEAV----------NIPVIASG-GVRSLEDLRELKK 211 (229)
T ss_dssp HHHHHT-----T-SEEE--EEETTTTTTSSS--HHH----HHHHHHHH----------SSEEEEES-S--SHHHHHHHHH
T ss_pred HHHHhc-----CCcEEE--EeeccccCCcCCCCHHH----HHHHHHHc----------CCCEEEec-CCCCHHHHHHHHH
Confidence 443322 123443 44566778877655443 34444432 48999999 99 7788888876
Q ss_pred ccc
Q 026522 225 LSF 227 (237)
Q Consensus 225 ~~~ 227 (237)
.|+
T Consensus 212 ~G~ 214 (229)
T PF00977_consen 212 AGI 214 (229)
T ss_dssp TTE
T ss_pred CCC
Confidence 554
No 239
>cd00949 FBP_aldolase_I_bact Fructose-1.6-bisphosphate aldolase found in gram +/- bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). The enzyme is member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=24.19 E-value=84 Score=28.99 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHHHHHCCCeEEEEeCCcHHH---HhcCCcHHHHHHHHHHHHhccCCCCCeEE
Q 026522 114 VAYALSQGLKVIACVGETLEQ---REAGSTMDVVAAQTKAIADRVSSWSNIVL 163 (237)
Q Consensus 114 v~~al~~gl~pIvCiGEt~e~---r~~g~~~~vl~~Ql~~~l~~i~~~~~iiI 163 (237)
.+.|.++||.||| |+.-. -+..+.++.|...|..-|+.++....+.+
T Consensus 161 A~~cq~~GLVPIV---EPEVli~~~~k~~~e~~l~~~i~~~l~~l~~~~~vml 210 (292)
T cd00949 161 AKQILSHGLVPII---EPEVDIHSADKAKCEAILKAEILKHLDKLPEGQQVML 210 (292)
T ss_pred HHHHHHcCCCceE---CceECCCCccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 5678899999998 66321 12224567788887777777655444443
No 240
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=23.72 E-value=1.2e+02 Score=26.01 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=32.5
Q ss_pred HHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 026522 82 EMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET 131 (237)
Q Consensus 82 ~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt 131 (237)
..+.+.|++++++-+-+|.......+-...++++... + .||++.|--
T Consensus 160 ~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~--~-ipvia~GGi 206 (232)
T TIGR03572 160 REAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAV--S-IPVIALGGA 206 (232)
T ss_pred HHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhC--C-CCEEEECCC
Confidence 6678899999999997775444444555555555543 3 689999864
No 241
>PRK04143 hypothetical protein; Provisional
Probab=23.60 E-value=3.2e+02 Score=24.73 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCC--CCHHHHHHHHHHHHHHHHhc
Q 026522 141 MDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKV--ATPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 141 ~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~--as~e~i~~~~~~IR~~l~~~ 196 (237)
.+.|..-.+++|......+-=.||+ | +||||.- +..+-++-+.+.+|+++.+.
T Consensus 182 ~~~L~~cy~s~L~~A~~~~~kSIAf-P--~IsTGi~gfP~~~aA~ia~~tv~~fl~~~ 236 (264)
T PRK04143 182 ADLLASCYRSCLKLAEKAGLKSIAF-C--CISTGVFGFPKEEAAEIAIKTVLSWLKEN 236 (264)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEe-c--cccCCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4455555556665322222224676 6 7888866 44445566778999998764
No 242
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.45 E-value=1.1e+02 Score=27.05 Aligned_cols=13 Identities=0% Similarity=-0.010 Sum_probs=6.4
Q ss_pred HHCCCeEEEEeCC
Q 026522 118 LSQGLKVIACVGE 130 (237)
Q Consensus 118 l~~gl~pIvCiGE 130 (237)
.+.|..-++++.=
T Consensus 40 ~~~g~~~l~i~Dl 52 (258)
T PRK01033 40 NEKEVDELIVLDI 52 (258)
T ss_pred HHcCCCEEEEEEC
Confidence 3455555555543
No 243
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=23.35 E-value=1.9e+02 Score=25.18 Aligned_cols=59 Identities=8% Similarity=-0.036 Sum_probs=37.1
Q ss_pred CCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522 159 SNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 159 ~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~ 230 (237)
...+|++=|++. +.++.++..- ...+|.+. +. .++||+-=| +++++|+.+++.-|.-+.
T Consensus 131 gaDYv~~Gpv~t--~tK~~~~p~g---l~~l~~~~-~~------~~iPvvAIG-GI~~~n~~~~~~~GA~gi 189 (221)
T PRK06512 131 RPDYLFFGKLGA--DNKPEAHPRN---LSLAEWWA-EM------IEIPCIVQA-GSDLASAVEVAETGAEFV 189 (221)
T ss_pred CCCEEEECCCCC--CCCCCCCCCC---hHHHHHHH-Hh------CCCCEEEEe-CCCHHHHHHHHHhCCCEE
Confidence 456899999984 3344322211 22344332 22 248988888 899999999888776543
No 244
>COG4843 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.34 E-value=80 Score=26.31 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=10.1
Q ss_pred CCCeEEEEccccc
Q 026522 158 WSNIVLAYEPVWA 170 (237)
Q Consensus 158 ~~~iiIAYEPvWA 170 (237)
.+.++|||||--.
T Consensus 151 ~kAFIia~EPk~i 163 (179)
T COG4843 151 PKAFIIAYEPKTI 163 (179)
T ss_pred CCcEEEEcCCcce
Confidence 4679999999643
No 245
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=23.30 E-value=1.3e+02 Score=23.08 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=47.2
Q ss_pred HHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522 112 DKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 112 ~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~ 191 (237)
+|..+++.++|.|++=||.. |-|..++ +|++..|..= .+=++-|. . -++++.+++...|-+
T Consensus 6 r~~Lr~~ah~l~p~v~IGK~------Glt~~vi-~ei~~aL~~h-ELIKVkvl--------~---~~~~~~~e~a~~i~~ 66 (95)
T TIGR00253 6 KRHLRGKAHHLKPVVLVGKN------GLTEGVI-KEIEQALEHR-ELIKVKVA--------T---EDREDKTLIAEALVK 66 (95)
T ss_pred HHHHHHHhCCCCCeEEECCC------CCCHHHH-HHHHHHHHhC-CcEEEEec--------C---CChhHHHHHHHHHHH
Confidence 56788999999999999974 6666554 6677666531 12223221 1 125666666666665
Q ss_pred HHHhcCCccccCcccEEEcCCC
Q 026522 192 WLLANTSPEIAAATRIIYGGIS 213 (237)
Q Consensus 192 ~l~~~~~~~~a~~i~ILYGG~S 213 (237)
......=. +-..+-+||=. |
T Consensus 67 ~~~a~~Vq-~iG~~~vlYR~-~ 86 (95)
T TIGR00253 67 ETGACNVQ-VIGKTIVLYRP-T 86 (95)
T ss_pred HHCCEEEE-EEccEEEEEec-C
Confidence 54322101 11235688877 5
No 246
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=23.28 E-value=88 Score=24.28 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=28.1
Q ss_pred CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEE
Q 026522 158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRII 208 (237)
Q Consensus 158 ~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~IL 208 (237)
-.+++|.+ | -||..|+.+..+.||+.+.+.||-....+++++
T Consensus 63 HanfivN~--------g-~Ata~dv~~Li~~v~~~V~~~~Gi~Le~Ev~~i 104 (105)
T PF02873_consen 63 HANFIVNH--------G-GATAADVLALIEEVRERVKEKFGIELEPEVRII 104 (105)
T ss_dssp STTEEEE---------S-S--HHHHHHHHHHHHHHHHHHHS--B-BSSEEE
T ss_pred hCCeEEEC--------C-CCCHHHHHHHHHHHHHHHHHHHCCeeeeccEEe
Confidence 34677764 3 479999999999999999999986655566554
No 247
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=23.28 E-value=1.5e+02 Score=25.59 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=11.9
Q ss_pred ccEEEcCCCCC-hhhHHHHHH
Q 026522 205 TRIIYGGISIN-VSHVLVHLL 224 (237)
Q Consensus 205 i~ILYGG~SV~-~~Na~~~~~ 224 (237)
+||++|| +|. ++.++.++.
T Consensus 72 ~pv~~~G-GI~s~~d~~~~l~ 91 (243)
T cd04731 72 IPLTVGG-GIRSLEDARRLLR 91 (243)
T ss_pred CCEEEeC-CCCCHHHHHHHHH
Confidence 6777777 766 355666554
No 248
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=23.26 E-value=1.4e+02 Score=28.43 Aligned_cols=134 Identities=14% Similarity=0.084 Sum_probs=67.1
Q ss_pred CCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcH--HHHhcCCcH--HHH---HHHHHHHHhccC-CCC
Q 026522 88 EIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETL--EQREAGSTM--DVV---AAQTKAIADRVS-SWS 159 (237)
Q Consensus 88 G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~--e~r~~g~~~--~vl---~~Ql~~~l~~i~-~~~ 159 (237)
|.+-|++-=|. .-|.|+-+..++=++.|-..|+.+=-=+|..- |+...+... +.+ -+|.....+... ...
T Consensus 135 gftSVMiDgS~--lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~Tg 212 (357)
T TIGR01520 135 LFSSHMIDLSE--EPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISP 212 (357)
T ss_pred CCceEEeeCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCC
Confidence 38889998885 45788888888888999999987644344221 111111110 111 123333332110 002
Q ss_pred CeEEEEcccccccC--CCC--CCHHHHHHHHHHHHHHHHhcCCccccCcc-cEEEcCCCCChhhHHHHHHccc
Q 026522 160 NIVLAYEPVWAIGT--GKV--ATPAQAQEVHFELRKWLLANTSPEIAAAT-RIIYGGISINVSHVLVHLLLSF 227 (237)
Q Consensus 160 ~iiIAYEPvWAIGt--G~~--as~e~i~~~~~~IR~~l~~~~~~~~a~~i-~ILYGG~SV~~~Na~~~~~~~~ 227 (237)
-..+|- |||| |.- -.|.---+..+.|++.+++..+-..+..+ =+|=||.++.+++.++....|.
T Consensus 213 vD~LAv----AiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI 281 (357)
T TIGR01520 213 NFSIAA----AFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGV 281 (357)
T ss_pred cceeee----eeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCC
Confidence 233443 6676 332 11222233344444333322220001111 1899997788899999666654
No 249
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.24 E-value=4.4e+02 Score=23.39 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=21.6
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhc
Q 026522 170 AIGTGKVATPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 170 AIGtG~~as~e~i~~~~~~IR~~l~~~ 196 (237)
.+|++....|..+.++.+.+.+++.+.
T Consensus 258 ~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 258 QVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred EEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 456676678999999999999988764
No 250
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.22 E-value=91 Score=28.70 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH-----cccccchh
Q 026522 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL-----LSFGCFYN 232 (237)
Q Consensus 177 as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~-----~~~~~~~~ 232 (237)
.+|+++.+++..+++ ++.+.-=| ++|++|++++-. ||-|+.|.
T Consensus 226 mspe~l~~av~~~~~------------~~~leaSG-GI~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 226 MSLEQIEQAITLIAG------------RSRIECSG-NIDMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred CCHHHHHHHHHHhcC------------ceEEEEEC-CCCHHHHHHHHhcCCCEEEeCcccc
Confidence 689999988887652 35677888 899999999874 56677765
No 251
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=23.22 E-value=3.5e+02 Score=20.98 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=26.6
Q ss_pred HHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522 114 VAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 114 v~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~ 191 (237)
++.+.+.|++.|+|.--..|+-++. +.+. ++..... ..+-..|=||= +...++++++...+.+.+
T Consensus 20 ~~~la~~GfktVInlRpd~E~~~qp-~~~~----~~~~a~~----~Gl~y~~iPv~----~~~~~~~~v~~f~~~l~~ 84 (110)
T PF04273_consen 20 LAQLAAQGFKTVINLRPDGEEPGQP-SSAE----EAAAAEA----LGLQYVHIPVD----GGAITEEDVEAFADALES 84 (110)
T ss_dssp HHHHHHCT--EEEE-S-TTSTTT-T--HHC----HHHHHHH----CT-EEEE--------TTT--HHHHHHHHHHHHT
T ss_pred HHHHHHCCCcEEEECCCCCCCCCCC-CHHH----HHHHHHH----cCCeEEEeecC----CCCCCHHHHHHHHHHHHh
Confidence 3677889999999994322221111 1111 2222221 12344566763 234688888776666553
No 252
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.11 E-value=3e+02 Score=25.02 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHccc
Q 026522 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSF 227 (237)
Q Consensus 177 as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~ 227 (237)
.+|++++++.+.++ ..+++.-=| ++|++|+.++..-|.
T Consensus 217 ~~~e~l~~~~~~~~------------~~i~i~AiG-GIt~~ni~~~a~~Gv 254 (277)
T PRK08072 217 RTPDEIREFVKLVP------------SAIVTEASG-GITLENLPAYGGTGV 254 (277)
T ss_pred CCHHHHHHHHHhcC------------CCceEEEEC-CCCHHHHHHHHHcCC
Confidence 67888776665442 236677778 899999999887654
No 253
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=23.09 E-value=6.1e+02 Score=23.50 Aligned_cols=153 Identities=15% Similarity=0.152 Sum_probs=91.0
Q ss_pred cccCCCHHHHHHHHHHHhcCCCCCCCCceEE---------------EcCccccHHHHHHhcC-CCcEEeeeccccccCcC
Q 026522 11 WKCNGTPEEVKKIVSVLNEGQVPSSDVVEVV---------------VSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGA 74 (237)
Q Consensus 11 WKmn~~~~~~~~~~~~l~~~~~~~~~~~~v~---------------i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA 74 (237)
|+-+.+.++..++++.+.+.-. +.+|+. ..|+.-++..+.+..+ ..+.... .+|-
T Consensus 17 ~~~~f~~~~~~~ia~~Ld~aGV---~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll------~pg~ 87 (333)
T TIGR03217 17 IRHQFTIEQVRAIAAALDEAGV---DAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLL------LPGI 87 (333)
T ss_pred CCCcCCHHHHHHHHHHHHHcCC---CEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEe------ccCc
Confidence 4456788999999998876422 234442 1234444444444433 2222111 1222
Q ss_pred cccccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhc
Q 026522 75 FTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR 154 (237)
Q Consensus 75 ~TGeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~ 154 (237)
.|= -..++..+.|++.+=|.= ...|.| .+.+=++.|.+.|+.+.+++=.+. ..+.+.+.+|++.+.+.
T Consensus 88 ~~~-~dl~~a~~~gvd~iri~~-----~~~e~d-~~~~~i~~ak~~G~~v~~~l~~s~-----~~~~e~l~~~a~~~~~~ 155 (333)
T TIGR03217 88 GTV-HDLKAAYDAGARTVRVAT-----HCTEAD-VSEQHIGMARELGMDTVGFLMMSH-----MTPPEKLAEQAKLMESY 155 (333)
T ss_pred cCH-HHHHHHHHCCCCEEEEEe-----ccchHH-HHHHHHHHHHHcCCeEEEEEEccc-----CCCHHHHHHHHHHHHhc
Confidence 221 136788889999876542 123333 466778999999999888875431 35667888888776541
Q ss_pred cCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHH
Q 026522 155 VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 155 i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l 193 (237)
....+.|+ =|.-.++|+++.+..+.+|+.+
T Consensus 156 --Ga~~i~i~-------DT~G~~~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 156 --GADCVYIV-------DSAGAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred --CCCEEEEc-------cCCCCCCHHHHHHHHHHHHHhC
Confidence 11223332 1444589999999999999865
No 254
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=23.08 E-value=1.1e+02 Score=27.49 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=42.6
Q ss_pred HHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD 153 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~ 153 (237)
-+..|++|.++|.|-----.. +++.-.+=++.+.+.|++++-=||-...+.+.-.+.+.+.+|++..|+
T Consensus 90 l~~~k~lGf~~IEiSdGti~l----~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLe 158 (244)
T PF02679_consen 90 LEECKELGFDAIEISDGTIDL----PEEERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLE 158 (244)
T ss_dssp HHHHHHCT-SEEEE--SSS-------HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCceeC----CHHHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHHHHHH
Confidence 357899999999885432211 112222234889999999999999766555555556677888877775
No 255
>PHA00432 internal virion protein A
Probab=22.85 E-value=44 Score=27.51 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=20.9
Q ss_pred ccccccCCCCC--CHHHHHHHHHHHHHHHHhc
Q 026522 167 PVWAIGTGKVA--TPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 167 PvWAIGtG~~a--s~e~i~~~~~~IR~~l~~~ 196 (237)
|||.+||...- ++..-.+..+.|++++..+
T Consensus 58 ~vW~v~T~~v~~~~~~~~reF~k~~~~~ld~m 89 (137)
T PHA00432 58 QVWFVTSDQVWRLTKKEKREFRKLIMEYRDMM 89 (137)
T ss_pred ceEEEecHHhhhCChhhhHHHHHHHHHHHHHH
Confidence 88999998773 4556666666777766443
No 256
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=22.81 E-value=6.1e+02 Score=23.43 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=59.5
Q ss_pred HHHHHhCCCCeEEecc----ccccccc--ccCHHHHHHHHHHHHHCCCeEEE-E--eCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGH----SERRLIL--NELNEFVGDKVAYALSQGLKVIA-C--VGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 81 a~mLkd~G~~~viIGH----SERR~~f--~Etd~~V~~Kv~~al~~gl~pIv-C--iGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
...|+++|++.+-+|= .+.++.+ +.+-+.+.+-++.+.++|+..+- . +|=+ |+|.+.+.+-++.+
T Consensus 103 l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlP------gqt~~~~~~~l~~~ 176 (377)
T PRK08599 103 LQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALP------GQTIEDFKESLAKA 176 (377)
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCC------CCCHHHHHHHHHHH
Confidence 5678889999998883 3333322 24566788888999999986442 2 2322 23334444444433
Q ss_pred HhccCCCCCeEEEE----ccc--c--cccCCC--CCCHHHHHHHHHHHHHHHHhc
Q 026522 152 ADRVSSWSNIVLAY----EPV--W--AIGTGK--VATPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 152 l~~i~~~~~iiIAY----EPv--W--AIGtG~--~as~e~i~~~~~~IR~~l~~~ 196 (237)
.+ +. ...+ -.| +|- + -.+.|+ .++.+...++++.+++.|.+.
T Consensus 177 ~~-l~-~~~i-~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~ 228 (377)
T PRK08599 177 LA-LD-IPHY-SAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAH 228 (377)
T ss_pred Hc-cC-CCEE-eeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 32 11 1111 122 331 0 012233 356677788889999988763
No 257
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=22.70 E-value=3.4e+02 Score=26.56 Aligned_cols=69 Identities=10% Similarity=0.005 Sum_probs=42.9
Q ss_pred CCCeEEEEcccccccCCC-CCCHHHHHHHHHHHHHHHHh-cCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522 158 WSNIVLAYEPVWAIGTGK-VATPAQAQEVHFELRKWLLA-NTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 158 ~~~iiIAYEPvWAIGtG~-~as~e~i~~~~~~IR~~l~~-~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~ 230 (237)
....+|+.=|+|.--|-. +..|--... .+.+++.+.. .+. ....+|++-=| +++++|+.+++..|..+.
T Consensus 319 ~gaDYI~lGPIFpT~TK~~~~~p~Gl~~-L~~~~~l~~~~~~~--~~~~iPVVAIG-GI~~~Ni~~vl~aGa~GV 389 (437)
T PRK12290 319 IQPSYIALGHIFPTTTKQMPSKPQGLVR-LALYQKLIDTIPYQ--GQTGFPTVAIG-GIDQSNAEQVWQCGVSSL 389 (437)
T ss_pred cCCCEEEECCccCCCCCCCCCCCCCHHH-HHHHHHHhhhcccc--ccCCCCEEEEC-CcCHHHHHHHHHcCCCEE
Confidence 456899999999997754 223322222 2222333211 111 12358998888 899999999998887654
No 258
>PLN02748 tRNA dimethylallyltransferase
Probab=22.64 E-value=37 Score=33.27 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=8.4
Q ss_pred cCcccEEEcC
Q 026522 202 AAATRIIYGG 211 (237)
Q Consensus 202 a~~i~ILYGG 211 (237)
...+|||.||
T Consensus 110 rgk~PIlVGG 119 (468)
T PLN02748 110 RNGLPVIVGG 119 (468)
T ss_pred cCCCeEEEcC
Confidence 3469999999
No 259
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=22.62 E-value=2.4e+02 Score=27.42 Aligned_cols=59 Identities=14% Similarity=-0.018 Sum_probs=38.9
Q ss_pred CCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccc
Q 026522 158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFG 228 (237)
Q Consensus 158 ~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~ 228 (237)
....+|++-|++.-.|-....|-. .+.+|++.. ..++||+-=| +++++|+.+++..|+.
T Consensus 409 ~gadyi~~gpif~t~tk~~~~~~g----~~~~~~~~~-------~~~~Pv~aiG-GI~~~~~~~~~~~G~~ 467 (502)
T PLN02898 409 DGADYIGCGGVFPTNTKANNKTIG----LDGLREVCE-------ASKLPVVAIG-GISASNAASVMESGAP 467 (502)
T ss_pred cCCCEEEECCeecCCCCCCCCCCC----HHHHHHHHH-------cCCCCEEEEC-CCCHHHHHHHHHcCCC
Confidence 345789999999876632122212 234444422 1247888888 8999999999999874
No 260
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=22.57 E-value=77 Score=23.11 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=25.5
Q ss_pred CcccEEEcCCCCChhhHHHHHHcccccchhh
Q 026522 203 AATRIIYGGISINVSHVLVHLLLSFGCFYNV 233 (237)
Q Consensus 203 ~~i~ILYGG~SV~~~Na~~~~~~~~~~~~~~ 233 (237)
.++.|.+||..|+.+++-.++.+|..|-+-+
T Consensus 31 ~~i~l~~~~~~vdaKSil~llsLg~~~g~~v 61 (82)
T PRK13782 31 ADIFIEKDGKKVNAKSIMGLMSLAIGTGSMI 61 (82)
T ss_pred CEEEEEECCeEEecHhHHHHHhcCCCCCCEE
Confidence 3578889997799999999999999886544
No 261
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=22.44 E-value=2.1e+02 Score=22.87 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=35.3
Q ss_pred CCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEE
Q 026522 89 IPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAY 165 (237)
Q Consensus 89 ~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAY 165 (237)
+..||++||++ |.|.-... ++... .-.+|+++|=+. +...+....+++..++.++. +.++|-|
T Consensus 2 vGIVlVSHs~~---lA~gl~~~---~~~i~--~~~~i~~~gg~~-----d~~~gt~~~~i~~ai~~~~~-dGVlVlt 64 (124)
T PRK14484 2 VGIVIVSHSKK---IAEGVKDL---IKQMA--PDVPIIYAGGTE-----DGRIGTSFDQIQEAIEKNES-DGVLIFF 64 (124)
T ss_pred eeEEEEeCcHH---HHHHHHHH---HHHhh--CCCCEEEecCCC-----CCCccchHHHHHHHHHhcCc-CCeEEEE
Confidence 34689999965 33322222 22222 466788888552 12344556667777766655 5666655
No 262
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=22.34 E-value=4.7e+02 Score=22.65 Aligned_cols=76 Identities=9% Similarity=0.189 Sum_probs=40.2
Q ss_pred CceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccc----cCHHHHHhCCCCeEEecccccccccccCHHHHHH
Q 026522 37 VVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGE----ISAEMLVNLEIPWVILGHSERRLILNELNEFVGD 112 (237)
Q Consensus 37 ~~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGe----iSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~ 112 (237)
+.+.++|++.- +..+.+.....+..-+--+.+ .|.-.|+ .++....+.|++++++|=+ -+-.++-....+
T Consensus 148 g~dgvv~~~~~-~~~ir~~~~~~~~~v~pGI~~--~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~---I~~a~dP~~~a~ 221 (230)
T PRK00230 148 GLDGVVCSAQE-AAAIREATGPDFLLVTPGIRP--AGSDAGDQKRVMTPAQAIAAGSDYIVVGRP---ITQAADPAAAYE 221 (230)
T ss_pred CCeEEEeChHH-HHHHHhhcCCceEEEcCCcCC--CCCCcchHHHHhCHHHHHHcCCCEEEECCc---ccCCCCHHHHHH
Confidence 56777776543 344544433333333334442 1222233 1577777899999999932 333344455656
Q ss_pred HHHHHH
Q 026522 113 KVAYAL 118 (237)
Q Consensus 113 Kv~~al 118 (237)
+++..+
T Consensus 222 ~i~~~i 227 (230)
T PRK00230 222 AILAEI 227 (230)
T ss_pred HHHHHh
Confidence 655544
No 263
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=22.34 E-value=1.5e+02 Score=26.21 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcc
Q 026522 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLS 226 (237)
Q Consensus 177 as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~ 226 (237)
.+|+++......++.. . .+....-.++.|+.-| ++|++|++++...|
T Consensus 214 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~i~~Sg-gi~~~~i~~~~~~g 260 (281)
T cd00516 214 GSPEELDPAVLILKAR-A-HLDGKGLPRVKIEASG-GLDEENIRAYAETG 260 (281)
T ss_pred CChHHHHHHHHHHHHH-H-hhhhcCCCceEEEEeC-CCCHHHHHHHHHcC
Confidence 4567777766665532 1 1111123467899999 99999999987653
No 264
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=22.18 E-value=3.9e+02 Score=22.83 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=41.7
Q ss_pred CCcEEeeeccccccCcC---------cccccCHHHHHhCCCCeEEec--ccccccccccCHHHHHHHHHHHHHCCCeEEE
Q 026522 58 PGFHVAAQNCWVKKGGA---------FTGEISAEMLVNLEIPWVILG--HSERRLILNELNEFVGDKVAYALSQGLKVIA 126 (237)
Q Consensus 58 ~~i~igAQnv~~~~~GA---------~TGeiSa~mLkd~G~~~viIG--HSERR~~f~Etd~~V~~Kv~~al~~gl~pIv 126 (237)
..+.++-+-.-..+.|. .+..-.++.|+++|.+.+-+| |. |.-..+-+.+.++...++|+.. +
T Consensus 38 ~D~~~~NlE~~~~~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~~tlaNNH~-----fD~G~~gl~~t~~~l~~~~i~~-~ 111 (239)
T cd07381 38 ADLAIGNLETPLTDKGSPAPSKYPHFRAPPEVADALKAAGFDVVSLANNHT-----LDYGEEGLLDTLDALDEAGIAH-A 111 (239)
T ss_pred CCEEEEEeecCccCCCCcCCCCceEecCCHHHHHHHHHhCCCEEEcccccc-----cccchHHHHHHHHHHHHcCCce-e
Confidence 45555555544333333 123456788999999998775 86 4434445656666666777764 5
Q ss_pred EeCCcH
Q 026522 127 CVGETL 132 (237)
Q Consensus 127 CiGEt~ 132 (237)
+.|.+.
T Consensus 112 g~~~~~ 117 (239)
T cd07381 112 GAGRNL 117 (239)
T ss_pred ECCCCH
Confidence 566654
No 265
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.11 E-value=1.7e+02 Score=26.33 Aligned_cols=105 Identities=24% Similarity=0.205 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCceEEEcCccccHHHHHHhcC-CCcEEeeeccccccCcCcccccCHHHHHhCCCCeEEecc
Q 026522 18 EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGH 96 (237)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~~~~~v~i~Pp~~~L~~~~~~~~-~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~viIGH 96 (237)
+++....+.+.........++.+--.-|.+.+.-+..... ..+-+-|-|++.. |.---+-=.+.|+.+ +||
T Consensus 17 sDvE~iSkalQr~aLG~eYnITisSIiPTT~~eIA~raaeGADlvlIATDaD~~--GReLA~kf~eeLrg~------VGh 88 (290)
T COG4026 17 SDVEVISKALQRLALGSEYNITISSIIPTTNVEIAKRAAEGADLVLIATDADRV--GRELAEKFFEELRGM------VGH 88 (290)
T ss_pred chHHHHHHHHHHhhhcccceeEEEeeccCchHHHHHHhhccCCEEEEeecCcch--hHHHHHHHHHHHHHh------hhh
Confidence 3444444444332223335666666677888877666655 6788999998843 322222233445544 899
Q ss_pred ccccccc-c-----cCHHHHHHHHHHHH-HCCCeEEEEeCC
Q 026522 97 SERRLIL-N-----ELNEFVGDKVAYAL-SQGLKVIACVGE 130 (237)
Q Consensus 97 SERR~~f-~-----Etd~~V~~Kv~~al-~~gl~pIvCiGE 130 (237)
-||-++- | =+-++|.+-+++|+ ++||+.+--|-|
T Consensus 89 iERmK~PiGHDvEhiD~elvrkEl~nAlvRAGLktL~~v~~ 129 (290)
T COG4026 89 IERMKIPIGHDVEHIDVELVRKELKNALVRAGLKTLQRVPE 129 (290)
T ss_pred hheeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9997632 2 25578999999887 899998874443
No 266
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=22.03 E-value=1.6e+02 Score=22.63 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHH
Q 026522 175 KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVH 222 (237)
Q Consensus 175 ~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~ 222 (237)
.+.+...+.++.+.||+. ..+++|+.|| ..-..+..++
T Consensus 48 ~~~~~~~~~~~~~~ik~~---------~p~~~iv~GG-~~~t~~p~~~ 85 (127)
T cd02068 48 MTSAIYEALELAKIAKEV---------LPNVIVVVGG-PHATFFPEEI 85 (127)
T ss_pred ccccHHHHHHHHHHHHHH---------CCCCEEEECC-cchhhCHHHH
Confidence 344455666667777654 3458999999 5544555553
No 267
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=21.96 E-value=72 Score=27.55 Aligned_cols=52 Identities=12% Similarity=0.307 Sum_probs=32.3
Q ss_pred CCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCcccc----CcccEEEcCCCCChhhH
Q 026522 157 SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIA----AATRIIYGGISINVSHV 219 (237)
Q Consensus 157 ~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a----~~i~ILYGG~SV~~~Na 219 (237)
....+.|-|.|.-. +..++.+.|++.+.+....... -.+||.||| ++.|+-.
T Consensus 48 ~~~sllV~fdp~~~----------~~~~l~~~l~~~~~~~~~~~~~~~r~~~iPV~Y~~-~~g~DL~ 103 (202)
T PF02682_consen 48 AYRSLLVHFDPLRI----------DRAALRAALEELLASPQPSEKPPSRLIEIPVCYDG-EFGPDLE 103 (202)
T ss_dssp ESSEEEEEESTTTS----------HHHHHHHHHHHHHCCCCSSCCCCEEEEEEEEEEST-TTHTTHH
T ss_pred cccEEEEEEcCCcC----------CHHHHHHHHHHhhhhccccccCCCceEEEEEEECC-CCCCCHH
Confidence 46778888988421 3345567777776652211111 357999999 8887543
No 268
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=21.95 E-value=1e+02 Score=28.99 Aligned_cols=46 Identities=28% Similarity=0.169 Sum_probs=29.1
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHH
Q 026522 169 WAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVH 222 (237)
Q Consensus 169 WAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~ 222 (237)
-.|+|+--..-.-+.++...+.+.|. +-++||+.|| |=||+-=.+.
T Consensus 171 HlIsTdPki~D~p~~EAak~lEdvLq-------AVdvPiiiGG-SGnpeKDpeV 216 (403)
T COG2069 171 HLISTDPKIKDTPAKEAAKTLEDVLQ-------AVDVPIIIGG-SGNPEKDPEV 216 (403)
T ss_pred EeecCCccccCCCHHHHHHHHHHHHH-------hcCcCEEecC-CCCCccCHHH
Confidence 57888755333333444555555553 4569999999 9999754443
No 269
>TIGR01003 PTS_HPr_family Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein.
Probab=21.86 E-value=79 Score=23.05 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.7
Q ss_pred CcccEEEcCCCCChhhHHHHHHcccccchhhh
Q 026522 203 AATRIIYGGISINVSHVLVHLLLSFGCFYNVQ 234 (237)
Q Consensus 203 ~~i~ILYGG~SV~~~Na~~~~~~~~~~~~~~~ 234 (237)
.++.+.++|..|+.+++-.++.+|..|-+-++
T Consensus 31 s~I~i~~~~~~~dakSil~ll~Lg~~~G~~i~ 62 (82)
T TIGR01003 31 SEITLTKNGKEVNAKSIMGIMMLGAGQGTEVT 62 (82)
T ss_pred CEEEEEECCEEEehHhHHHHHhcCCCCCCEEE
Confidence 45889999867999999999998888866543
No 270
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=21.67 E-value=1.4e+02 Score=28.07 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522 179 PAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 179 ~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~ 225 (237)
|++..+....+|+.+.+.- .+++.|..=| ++|++|+.++-..
T Consensus 240 ~g~l~~~v~~vr~~ld~~g----~~~v~IeaSG-gI~~~ni~~ya~~ 281 (343)
T PRK08662 240 RGNFRKIVREVRWTLDIRG----YEHVKIFVSG-GLDPERIRELRDV 281 (343)
T ss_pred CccHHHHHHHHHHHHHhcC----CCCeEEEEeC-CCCHHHHHHHHHh
Confidence 5888888888888775431 1347899999 9999999998653
No 271
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=21.66 E-value=2.7e+02 Score=23.57 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=34.9
Q ss_pred CHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEe
Q 026522 80 SAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128 (237)
Q Consensus 80 Sa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCi 128 (237)
.++.|+++|+.|..-==|-+| |-+.+-+=++.|.+.|+.+|+-.
T Consensus 21 Aa~~L~~fgi~ye~~VvSAHR-----TPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 21 AAEILEEFGVPYEVRVVSAHR-----TPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred HHHHHHHcCCCeEEEEEeccC-----CHHHHHHHHHHHHHCCCeEEEec
Confidence 378999999999776666666 56677777899999999888743
No 272
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.65 E-value=5.9e+02 Score=22.81 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=56.0
Q ss_pred ccCHHHHHhCCCCeEEecccccccccc----cCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHh
Q 026522 78 EISAEMLVNLEIPWVILGHSERRLILN----ELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD 153 (237)
Q Consensus 78 eiSa~mLkd~G~~~viIGHSERR~~f~----Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~ 153 (237)
|....||+|+|.+-+ ++|. ..-+.+..=+++|.++|+. + |+ --|...+-..+=++.+|+
T Consensus 138 etAiaml~dmG~~Si--------KffPM~Gl~~leE~~avA~aca~~g~~----l-EP----TGGIdl~Nf~~I~~i~ld 200 (236)
T TIGR03581 138 ETAIAMLKDMGGSSV--------KFFPMGGLKHLEEYAAVAKACAKHGFY----L-EP----TGGIDLDNFEEIVQIALD 200 (236)
T ss_pred HHHHHHHHHcCCCee--------eEeecCCcccHHHHHHHHHHHHHcCCc----c-CC----CCCccHHhHHHHHHHHHH
Confidence 444579999998765 4442 2345676777999999985 2 65 234555555555555554
Q ss_pred -ccCCCCCeE-EEEcccccccCCCCCCHHHHHHHHHHHH
Q 026522 154 -RVSSWSNIV-LAYEPVWAIGTGKVATPAQAQEVHFELR 190 (237)
Q Consensus 154 -~i~~~~~ii-IAYEPvWAIGtG~~as~e~i~~~~~~IR 190 (237)
+++ +++ =-|--+=-=.||.+ .||++++....++
T Consensus 201 aGv~---kviPHIYssiIDk~tG~T-rpedV~~l~~~~k 235 (236)
T TIGR03581 201 AGVE---KVIPHVYSSIIDKETGNT-RVEDVKQLLAIVK 235 (236)
T ss_pred cCCC---eeccccceeccccccCCC-CHHHHHHHHHHhh
Confidence 222 111 01433323368887 6999998887765
No 273
>PRK14072 6-phosphofructokinase; Provisional
Probab=21.65 E-value=1.4e+02 Score=28.67 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=33.2
Q ss_pred HHhCCCCeEEecccccccc--cccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 026522 84 LVNLEIPWVILGHSERRLI--LNELNEFVGDKVAYALSQGLKVIACVGET 131 (237)
Q Consensus 84 Lkd~G~~~viIGHSERR~~--f~Etd~~V~~Kv~~al~~gl~pIvCiGEt 131 (237)
|...| .+++|-| |... |.++++...+=++...++|+.-+++||=+
T Consensus 67 i~~~g--Gt~Lgss-R~~~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGd 113 (416)
T PRK14072 67 LAHTP--SGALGSC-RYKLKSLEEDRAEYERLLEVFKAHDIGYFFYNGGN 113 (416)
T ss_pred HhcCC--CeEeccC-CCCCcccccChHHHHHHHHHHHHcCCCEEEEECCh
Confidence 44455 4489999 6665 55566667666777789999999999965
No 274
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=21.53 E-value=97 Score=31.25 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=26.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHH
Q 026522 171 IGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLL 224 (237)
Q Consensus 171 IGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~ 224 (237)
=|||++.+-+.++ .+ ....|++-.| +++|+|+.+++.
T Consensus 142 GGtG~~fdw~~~~-------~~---------~~~~p~iLAG-GL~peNV~~ai~ 178 (610)
T PRK13803 142 GGSGKSFDWEKFY-------NY---------NFKFPFFLSG-GLSPTNFDRIIN 178 (610)
T ss_pred CCCCCccChHHhh-------hc---------ccCCcEEEEe-CCCHHHHHHHHh
Confidence 4799998776542 21 1124788889 999999999875
No 275
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=21.53 E-value=96 Score=29.44 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=39.4
Q ss_pred ceEEEcCccccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCCeEE
Q 026522 38 VEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVI 93 (237)
Q Consensus 38 ~~v~i~Pp~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~vi 93 (237)
+.+.=||...-....+..+.-++..||-|+- --|+|.|.|||..|.+.|+==+|
T Consensus 245 v~iAEFPtT~eAA~asr~~Gm~VlMGAPNiv--rGgSHsGNvsA~ela~~glLDiL 298 (377)
T COG3454 245 VAIAEFPTTVEAAKASRELGMQVLMGAPNIV--RGGSHSGNVSARELAQHGLLDIL 298 (377)
T ss_pred eeEEeCccHHHHHHHHHHhCchhhcCCCcee--ccCCcccchhHHHHHhCCceeee
Confidence 4456667665555555554456889999986 46789999999999999875554
No 276
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.35 E-value=96 Score=28.37 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc-----ccccchh
Q 026522 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL-----SFGCFYN 232 (237)
Q Consensus 177 as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~-----~~~~~~~ 232 (237)
.+|+++++++..++. ..++--=| ++|++|++++-.. |-|.++.
T Consensus 223 ~s~e~l~~av~~~~~------------~~~leaSG-GI~~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 223 MTPDTLREAVAIVAG------------RAITEASG-RITPETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred CCHHHHHHHHHHhCC------------CceEEEEC-CCCHHHHHHHHhcCCCEEEeChhhc
Confidence 578998888776642 23578888 8999999997654 4555554
No 277
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=21.18 E-value=4.9e+02 Score=21.84 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=22.9
Q ss_pred HHHHHhCCCCeEEecccccccccccCH-HHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGHSERRLILNELN-EFVGDKVAYA 117 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~Etd-~~V~~Kv~~a 117 (237)
+..+.+.|++++++| |..|+..| ....++++..
T Consensus 178 ~~~~~~aGad~iV~G----r~I~~~~d~~~~~~~l~~~ 211 (215)
T PRK13813 178 AADAIKAGADYVIVG----RSIYNAADPREAAKAINEE 211 (215)
T ss_pred HHHHHHcCCCEEEEC----cccCCCCCHHHHHHHHHHH
Confidence 778889999999999 67776444 3444444443
No 278
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=21.06 E-value=86 Score=22.34 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=16.8
Q ss_pred EEecccCC--CHHHHHHHHHHHhc
Q 026522 8 GGNWKCNG--TPEEVKKIVSVLNE 29 (237)
Q Consensus 8 ~~NWKmn~--~~~~~~~~~~~l~~ 29 (237)
.+=||||. +....++|-+.|.+
T Consensus 31 G~~WKmhHWn~qrkt~~fY~~Lek 54 (63)
T PLN03155 31 GGLWKMHHWNEQRKTRSFYDLLEK 54 (63)
T ss_pred hhHHHHhhhhhHHHHHHHHHHHhc
Confidence 46799995 67778888887764
No 279
>PLN02783 diacylglycerol O-acyltransferase
Probab=21.00 E-value=4.1e+02 Score=24.44 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCC
Q 026522 177 ATPAQAQEVHFELRKWLLANTS 198 (237)
Q Consensus 177 as~e~i~~~~~~IR~~l~~~~~ 198 (237)
++.|++++.|+.+.+.+.+++.
T Consensus 278 ~~~e~v~~~~~~~~~al~~L~~ 299 (315)
T PLN02783 278 PSQEEVAEVLEQFVEALQDLFE 299 (315)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999988888887763
No 280
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=20.87 E-value=5.5e+02 Score=23.11 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=54.8
Q ss_pred HHHHHHCCCeEE---EEeCCcHHHHhcCCcHHHHHHHHHHHHhccCC-CCCeEEEEcccccccCCCCCCHHHHHHHHHHH
Q 026522 114 VAYALSQGLKVI---ACVGETLEQREAGSTMDVVAAQTKAIADRVSS-WSNIVLAYEPVWAIGTGKVATPAQAQEVHFEL 189 (237)
Q Consensus 114 v~~al~~gl~pI---vCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~-~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~I 189 (237)
++.|++.|...| +.+.+.--++..+++.+...+++..+++.... .-.+.+..|= .|.+-..+|+.+.++.+.+
T Consensus 80 ~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d---~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 80 VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED---WSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe---CCCCCcCCHHHHHHHHHHH
Confidence 477777777643 23345556667778888887887777664422 2344454442 3333245788877766665
Q ss_pred HHHHHhcCCccccCcccEEE---cCCCCChhhHHHHH
Q 026522 190 RKWLLANTSPEIAAATRIIY---GGISINVSHVLVHL 223 (237)
Q Consensus 190 R~~l~~~~~~~~a~~i~ILY---GG~SV~~~Na~~~~ 223 (237)
.+. |. + +|-+ -| ..+|.-+.+++
T Consensus 157 ~~~-----G~---~--~i~l~DT~G-~~~P~~v~~l~ 182 (280)
T cd07945 157 SDL-----PI---K--RIMLPDTLG-ILSPFETYTYI 182 (280)
T ss_pred HHc-----CC---C--EEEecCCCC-CCCHHHHHHHH
Confidence 542 21 1 1221 36 67777776654
No 281
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=20.82 E-value=1.9e+02 Score=22.85 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=36.5
Q ss_pred cccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCc
Q 026522 77 GEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGET 131 (237)
Q Consensus 77 GeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt 131 (237)
|..-.++|++.|++.+-. ....++-+.|.+.++.+++.. -.|++.|=+
T Consensus 19 ~~~l~~~l~~~G~~v~~~------~~v~Dd~~~i~~~l~~~~~~~-D~VittGG~ 66 (144)
T PF00994_consen 19 GPFLAALLEELGIEVIRY------GIVPDDPDAIKEALRRALDRA-DLVITTGGT 66 (144)
T ss_dssp HHHHHHHHHHTTEEEEEE------EEEESSHHHHHHHHHHHHHTT-SEEEEESSS
T ss_pred HHHHHHHHHHcCCeeeEE------EEECCCHHHHHHHHHhhhccC-CEEEEcCCc
Confidence 445578899998866643 345678889999999998887 888888855
No 282
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=20.77 E-value=1.6e+02 Score=21.83 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=21.1
Q ss_pred CcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCC-CCHHHHHHH
Q 026522 139 STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKV-ATPAQAQEV 185 (237)
Q Consensus 139 ~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~-as~e~i~~~ 185 (237)
.+.+.|.+=++.+|......+--.||. | +||||.- .+++++.++
T Consensus 73 ~~~~~L~~~~~~~l~~a~~~~~~sIa~-P--~ig~G~~g~~~~~~a~i 117 (118)
T PF01661_consen 73 NSYEALESAYRNALQKAEENGIKSIAF-P--AIGTGIGGFPWDEVAEI 117 (118)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTSEEEE-E--STTSSTTSBTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCccccc-C--cccCCCCCCCHHHHHhh
Confidence 344455555555554332111113343 6 6787765 356665543
No 283
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=20.74 E-value=2.3e+02 Score=22.78 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=30.5
Q ss_pred HHHHHhCCCCeEEe--c-cc-----------ccccccccCHHHHHHHHHHHHHCCCeEEEEe
Q 026522 81 AEMLVNLEIPWVIL--G-HS-----------ERRLILNELNEFVGDKVAYALSQGLKVIACV 128 (237)
Q Consensus 81 a~mLkd~G~~~viI--G-HS-----------ERR~~f~Etd~~V~~Kv~~al~~gl~pIvCi 128 (237)
+++||++|++.+++ | |. +.. .++ ...+..-+++|-+.||.++.=+
T Consensus 6 ~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp-~L~--~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 6 VDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHP-GLK--RDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred HHHHHHhCCCEEEEEcccccEEEEccCCCCcCCC-CCC--cCHHHHHHHHHHHCCCEEEEEE
Confidence 46788888888888 3 21 111 222 3467777899999999998643
No 284
>PRK05927 hypothetical protein; Provisional
Probab=20.73 E-value=7e+02 Score=23.29 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=59.7
Q ss_pred cccCH---HHHHhCCCCeEEec-----cccccccccc-C--HHHHHHHHHHHHHCCCe----EEEEeCCcHHHHhcCCcH
Q 026522 77 GEISA---EMLVNLEIPWVILG-----HSERRLILNE-L--NEFVGDKVAYALSQGLK----VIACVGETLEQREAGSTM 141 (237)
Q Consensus 77 GeiSa---~mLkd~G~~~viIG-----HSERR~~f~E-t--d~~V~~Kv~~al~~gl~----pIvCiGEt~e~r~~g~~~ 141 (237)
|..+. ..||+.|+++..=| +++-|+...- + -+.=-+=++.|.+.|+. -++=+|||.++|-.-
T Consensus 143 G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri~~--- 219 (350)
T PRK05927 143 GISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLH--- 219 (350)
T ss_pred CCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHHHH---
Confidence 44444 45789999765542 2232332221 2 12333445888899886 467789999987411
Q ss_pred HHHHHHHHHHHhccCCCCCeE-EEEcccccccCC-----C-CCCHHHHHHHHHHHHHHH
Q 026522 142 DVVAAQTKAIADRVSSWSNIV-LAYEPVWAIGTG-----K-VATPAQAQEVHFELRKWL 193 (237)
Q Consensus 142 ~vl~~Ql~~~l~~i~~~~~ii-IAYEPvWAIGtG-----~-~as~e~i~~~~~~IR~~l 193 (237)
...|+.+-+.......+| +.|.|- ||. . .+++++.-++++.-|-.+
T Consensus 220 ---l~~Lr~lqd~~~gf~~fIp~~~~~~---~tpl~~~~~~~~s~~e~Lr~iAv~Rl~l 272 (350)
T PRK05927 220 ---LQTLRDAQDENPGFYSFIPWSYKPG---NTALGRRVPHQASPELYYRILAVARIFL 272 (350)
T ss_pred ---HHHHHHhhHhhCCeeeeeecCcCCC---CCccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 112222222222233333 344444 332 1 589999999999988765
No 285
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=20.72 E-value=5.4e+02 Score=22.04 Aligned_cols=156 Identities=18% Similarity=0.201 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCceEEEcCc--cccHHHHHHhcCCCcEEeeeccccccCcCcccccCHHHHHhCCCCeE
Q 026522 15 GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPP--FVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWV 92 (237)
Q Consensus 15 ~~~~~~~~~~~~l~~~~~~~~~~~~v~i~Pp--~~~L~~~~~~~~~~i~igAQnv~~~~~GA~TGeiSa~mLkd~G~~~v 92 (237)
.+.+++.+.++.+.+.-. .-+++-.=.| +-.|..+.+.....+.|||=-+-..+ .+....++|++++
T Consensus 19 ~~~~~~~~~~~a~~~gGi---~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~--------~~~~a~~aGA~fi 87 (206)
T PRK09140 19 ITPDEALAHVGALIEAGF---RAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPE--------QVDRLADAGGRLI 87 (206)
T ss_pred CCHHHHHHHHHHHHHCCC---CEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHH--------HHHHHHHcCCCEE
Confidence 367888888887765311 2244433222 22344444333235778876665444 4788999999999
Q ss_pred EecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEccccccc
Q 026522 93 ILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIG 172 (237)
Q Consensus 93 iIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIG 172 (237)
..+|... +.+ +.+.+.|+..+.=+ .|.+ |+..... ..-.+|..=|
T Consensus 88 vsp~~~~--------~v~----~~~~~~~~~~~~G~-~t~~-------------E~~~A~~----~Gad~vk~Fp----- 132 (206)
T PRK09140 88 VTPNTDP--------EVI----RRAVALGMVVMPGV-ATPT-------------EAFAALR----AGAQALKLFP----- 132 (206)
T ss_pred ECCCCCH--------HHH----HHHHHCCCcEEccc-CCHH-------------HHHHHHH----cCCCEEEECC-----
Confidence 9998743 334 66777888666521 2322 1222222 1112333224
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHcccccc
Q 026522 173 TGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLLSFGCF 230 (237)
Q Consensus 173 tG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~~~~~~ 230 (237)
+ ....++.+.+ +++. +. ..+|++-=| +|+++|+.+++.-|.-|.
T Consensus 133 a-~~~G~~~l~~----l~~~----~~----~~ipvvaiG-GI~~~n~~~~~~aGa~~v 176 (206)
T PRK09140 133 A-SQLGPAGIKA----LRAV----LP----PDVPVFAVG-GVTPENLAPYLAAGAAGF 176 (206)
T ss_pred C-CCCCHHHHHH----HHhh----cC----CCCeEEEEC-CCCHHHHHHHHHCCCeEE
Confidence 1 2345666543 2222 11 147888888 899999999998776553
No 286
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.59 E-value=1.1e+02 Score=28.34 Aligned_cols=36 Identities=14% Similarity=-0.011 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcCCCCChhhHHHHHHc
Q 026522 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISINVSHVLVHLLL 225 (237)
Q Consensus 177 as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG~SV~~~Na~~~~~~ 225 (237)
.+||++++++..++. ++.+--=| ++|++|+.++-..
T Consensus 234 mspe~l~~av~~~~~------------~~~lEaSG-GIt~~ni~~yA~t 269 (294)
T PRK06978 234 FTLDMMREAVRVTAG------------RAVLEVSG-GVNFDTVRAFAET 269 (294)
T ss_pred CCHHHHHHHHHhhcC------------CeEEEEEC-CCCHHHHHHHHhc
Confidence 588998887776542 35688888 8999999998753
No 287
>PLN02389 biotin synthase
Probab=20.52 E-value=7.3e+02 Score=23.47 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=57.7
Q ss_pred CHHHHHhCCCCeEEeccc--c--ccccc-ccCHHHHHHHHHHHHHCCCeE----EEEeCCcHHHHhcCCcHHHHHHHHHH
Q 026522 80 SAEMLVNLEIPWVILGHS--E--RRLIL-NELNEFVGDKVAYALSQGLKV----IACVGETLEQREAGSTMDVVAAQTKA 150 (237)
Q Consensus 80 Sa~mLkd~G~~~viIGHS--E--RR~~f-~Etd~~V~~Kv~~al~~gl~p----IvCiGEt~e~r~~g~~~~vl~~Ql~~ 150 (237)
....||++|++.+-++.- + -|++. ..+-+..-+-++.|.+.|+.+ |+=.||+.++|-. . ...|+.
T Consensus 180 ~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~-----~-l~~Lr~ 253 (379)
T PLN02389 180 QAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVG-----L-LHTLAT 253 (379)
T ss_pred HHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHH-----H-HHHHHh
Confidence 356678889999877764 2 12221 235566667779999999964 3335788877631 1 122222
Q ss_pred HHhccCCCCCeE-EEEcccc--cccCCCCCCHHHHHHHHHHHHHHH
Q 026522 151 IADRVSSWSNIV-LAYEPVW--AIGTGKVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 151 ~l~~i~~~~~ii-IAYEPvW--AIGtG~~as~e~i~~~~~~IR~~l 193 (237)
+-... ..+. -.+-|.- .++.-.++++++.-++++..|-.+
T Consensus 254 L~~~~---~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~l 296 (379)
T PLN02389 254 LPEHP---ESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVM 296 (379)
T ss_pred cccCC---cEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHC
Confidence 10010 1010 0122321 122223478989888998888765
No 288
>PRK10878 hypothetical protein; Provisional
Probab=20.52 E-value=96 Score=22.58 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=19.5
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHH
Q 026522 168 VWAIGTGKVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 168 vWAIGtG~~as~e~i~~~~~~IR~~l 193 (237)
-|..|.+.+++|+. +++++.||+..
T Consensus 40 ~W~~g~~~p~d~~l-~~iV~~Ir~~~ 64 (72)
T PRK10878 40 NWLMNHGKPADAEL-ERMVRLIQTRN 64 (72)
T ss_pred HHHhCCCCCCCHHH-HHHHHHHHHhc
Confidence 38999888877665 78899999853
No 289
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=20.39 E-value=5.9e+02 Score=22.32 Aligned_cols=13 Identities=23% Similarity=0.097 Sum_probs=8.6
Q ss_pred HHHHhCCCCeEEe
Q 026522 82 EMLVNLEIPWVIL 94 (237)
Q Consensus 82 ~mLkd~G~~~viI 94 (237)
+.+++.|++.++.
T Consensus 101 ~~~~~~gv~~Ii~ 113 (238)
T TIGR00161 101 EWMVRNNSRELIS 113 (238)
T ss_pred HHHHHcCCCeEEE
Confidence 4467777776665
No 290
>PRK14126 cell division protein ZapA; Provisional
Probab=20.35 E-value=58 Score=24.29 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=28.5
Q ss_pred CCCCeEEecccccccccccCHHHHHHHHHHHHHCC
Q 026522 87 LEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121 (237)
Q Consensus 87 ~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~g 121 (237)
+|-.|+|.| .|.+.++.+.-..|+.|++...+.+
T Consensus 14 ~G~~Y~i~~-~e~ee~l~~vA~~vd~km~ei~~~~ 47 (85)
T PRK14126 14 YGQQYTIVG-DESTSHIRMVAAIVDDKMRELNEKN 47 (85)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 577899998 6667888888999999999888754
No 291
>PRK07094 biotin synthase; Provisional
Probab=20.33 E-value=6.3e+02 Score=22.65 Aligned_cols=101 Identities=18% Similarity=0.016 Sum_probs=56.1
Q ss_pred HHHHHhCCCCeEEeccc----cccccc--ccCHHHHHHHHHHHHHCCCeE----EEEe-CCcHHHHhcCCcHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGHS----ERRLIL--NELNEFVGDKVAYALSQGLKV----IACV-GETLEQREAGSTMDVVAAQTK 149 (237)
Q Consensus 81 a~mLkd~G~~~viIGHS----ERR~~f--~Etd~~V~~Kv~~al~~gl~p----IvCi-GEt~e~r~~g~~~~vl~~Ql~ 149 (237)
...|+++|++.+.+|.- +-+..+ +-+-+.+-+-++.+.++|+.+ |+-. |||.+++. +-+.
T Consensus 132 l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~---------~~l~ 202 (323)
T PRK07094 132 YKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLA---------DDIL 202 (323)
T ss_pred HHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHH---------HHHH
Confidence 57789999999988762 222222 235566777788999999853 2222 67766543 1111
Q ss_pred HHHhccCCCCCeEEEEcccccccCC----CCCCHHHHHHHHHHHHHHH
Q 026522 150 AIADRVSSWSNIVLAYEPVWAIGTG----KVATPAQAQEVHFELRKWL 193 (237)
Q Consensus 150 ~~l~~i~~~~~iiIAYEPvWAIGtG----~~as~e~i~~~~~~IR~~l 193 (237)
.+..+....--+-.|-|.- ||. .++++++.-++++..|..+
T Consensus 203 -~l~~l~~~~v~~~~~~P~p--gTpl~~~~~~~~~~~~~~~a~~R~~l 247 (323)
T PRK07094 203 -FLKELDLDMIGIGPFIPHP--DTPLKDEKGGSLELTLKVLALLRLLL 247 (323)
T ss_pred -HHHhCCCCeeeeeccccCC--CCCcccCCCCCHHHHHHHHHHHHHhC
Confidence 1222211001112233321 332 1357788888888888765
No 292
>KOG0831 consensus Acyl-CoA:diacylglycerol acyltransferase (DGAT) [Lipid transport and metabolism]
Probab=20.32 E-value=1.8e+02 Score=27.47 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=50.0
Q ss_pred HHHHHHCC--CeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhcc---C-----------------C-CCCe-EEEEcccc
Q 026522 114 VAYALSQG--LKVIACVGETLEQREAGSTMDVVAAQTKAIADRV---S-----------------S-WSNI-VLAYEPVW 169 (237)
Q Consensus 114 v~~al~~g--l~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i---~-----------------~-~~~i-iIAYEPvW 169 (237)
|+.|++.| |.|++|-||+.-........+-..+..+...+.+ . . -.++ ++-=||+-
T Consensus 210 VklAl~tGs~LVP~~sFGE~di~~q~~np~~s~lr~~Q~~~k~~~gf~~~~f~grg~~~~~~gllP~r~pi~~VVG~Pi~ 289 (334)
T KOG0831|consen 210 VKLALQTGASLVPVFSFGENDVYKQVENPKGSRLRKFQEWFKKIFGFTPPIFYGRGFFQYTFGLLPFRRPITTVVGEPIP 289 (334)
T ss_pred HHHHHHhCCCcCceeecccceeeeeecCCCcchhHHHHHHHHHhcCcccceEecccccccccccccccCcceeEecCccC
Confidence 48888766 7799999987422111111222222222222211 0 0 1122 23445543
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhcCCccccCcccEEEcC
Q 026522 170 AIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211 (237)
Q Consensus 170 AIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a~~i~ILYGG 211 (237)
.-= -.-++.|++.+.|+..=+.|+++|.+ -+.-||=
T Consensus 290 v~k-~~~Pt~e~id~~H~~y~~~L~~LF~~-----hK~k~g~ 325 (334)
T KOG0831|consen 290 VPK-TENPTQEQIDKYHGLYIDALRKLFDE-----HKTKYGV 325 (334)
T ss_pred Ccc-CcCCCHHHHHHHHHHHHHHHHHHHHh-----hccccCC
Confidence 322 12378999999999988889888864 3555553
No 293
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=20.30 E-value=1.6e+02 Score=26.01 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=18.2
Q ss_pred HHHHHhCCCCeEEecccccccccc----cCHHHHHHHHHHHHHCCCe
Q 026522 81 AEMLVNLEIPWVILGHSERRLILN----ELNEFVGDKVAYALSQGLK 123 (237)
Q Consensus 81 a~mLkd~G~~~viIGHSERR~~f~----Etd~~V~~Kv~~al~~gl~ 123 (237)
..||+|+|++-+ ++|. ..-+.+..=+++|.++|+.
T Consensus 141 iaml~dmG~~Si--------KffPm~Gl~~leE~~avAkA~a~~g~~ 179 (218)
T PF07071_consen 141 IAMLKDMGGSSI--------KFFPMGGLKHLEELKAVAKACARNGFT 179 (218)
T ss_dssp HHHHHHTT--EE--------EE---TTTTTHHHHHHHHHHHHHCT-E
T ss_pred HHHHHHcCCCee--------eEeecCCcccHHHHHHHHHHHHHcCce
Confidence 579999998765 4442 2234454555666666654
No 294
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=20.26 E-value=4.6e+02 Score=23.32 Aligned_cols=109 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHhCCCCeEEecc---ccc---------ccccccCHHHHHH-------------HHHHHHHCCCe---EEEEeCCcH
Q 026522 81 AEMLVNLEIPWVILGH---SER---------RLILNELNEFVGD-------------KVAYALSQGLK---VIACVGETL 132 (237)
Q Consensus 81 a~mLkd~G~~~viIGH---SER---------R~~f~Etd~~V~~-------------Kv~~al~~gl~---pIvCiGEt~ 132 (237)
+++|.++|++++.+|. |+. ...+..+...... .++.++++|.. ..++.-+.-
T Consensus 26 ~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~ 105 (273)
T cd07941 26 ARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVTIFGKSWDLH 105 (273)
T ss_pred HHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCCCEEEEEEcCCHHH
Q ss_pred HHHhcCCcHHHHHHHHHHHHhccCCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHH
Q 026522 133 EQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRK 191 (237)
Q Consensus 133 e~r~~g~~~~vl~~Ql~~~l~~i~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~ 191 (237)
-+..-|++.+...+.+...++.......-+..+ .++.--+-..+++.+.+..+.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~~~~~d~~~~~~~~~~~~~~~~~~ 162 (273)
T cd07941 106 VTEALGTTLEENLAMIRDSVAYLKSHGREVIFD--AEHFFDGYKANPEYALATLKAAAE 162 (273)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEe--EEeccccCCCCHHHHHHHHHHHHh
No 295
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=20.18 E-value=1.9e+02 Score=21.63 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=40.1
Q ss_pred cccCHHHHHhCCCCeEEecccccccccccCHHHHHHHHHHHHHCCCeEEEEeCCcHHHHhcCCcHHHHHHHHHHHHhccC
Q 026522 77 GEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS 156 (237)
Q Consensus 77 GeiSa~mLkd~G~~~viIGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGEt~e~r~~g~~~~vl~~Ql~~~l~~i~ 156 (237)
|-....++|..|++-+.+..+|.|+ +.+.+.|...++---+.. +.+|++....+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~~~k~-------------~~~~~~Ga~~~~~~~~~~-----------~~~~i~~~~~~-- 56 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRSEEKL-------------ELAKELGADHVIDYSDDD-----------FVEQIRELTGG-- 56 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESSHHHH-------------HHHHHTTESEEEETTTSS-----------HHHHHHHHTTT--
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHH-------------HHHHhhcccccccccccc-----------ccccccccccc--
Confidence 4455678899998888888888653 556777766665443321 44555555432
Q ss_pred CCCCeEEEEccc
Q 026522 157 SWSNIVLAYEPV 168 (237)
Q Consensus 157 ~~~~iiIAYEPv 168 (237)
..+-+++|.+
T Consensus 57 --~~~d~vid~~ 66 (130)
T PF00107_consen 57 --RGVDVVIDCV 66 (130)
T ss_dssp --SSEEEEEESS
T ss_pred --ccceEEEEec
Confidence 3455667764
No 296
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.13 E-value=7.8e+02 Score=23.62 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=65.3
Q ss_pred HHHHHhCCCCeEEeccc----cccccc--ccCHHHHHHHHHHHHHCCCeEEEE---eCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGHS----ERRLIL--NELNEFVGDKVAYALSQGLKVIAC---VGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 81 a~mLkd~G~~~viIGHS----ERR~~f--~Etd~~V~~Kv~~al~~gl~pIvC---iGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
...|++.||+.+-+|=- +-++.+ ..+-+.+.+.++.+.+.|...|.+ .|=+ |+|.+.+.+-|+.+
T Consensus 166 l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlP------gqT~e~~~~~l~~~ 239 (449)
T PRK09058 166 ADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLP------GQTPEIWQQDLAIV 239 (449)
T ss_pred HHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCC------CCCHHHHHHHHHHH
Confidence 45778999999999842 222222 236678888899999999554433 3432 45555666666665
Q ss_pred Hhc-cCCCCCeEEEEccc----ccccCCCC--C-CHHHHHHHHHHHHHHHHhc
Q 026522 152 ADR-VSSWSNIVLAYEPV----WAIGTGKV--A-TPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 152 l~~-i~~~~~iiIAYEPv----WAIGtG~~--a-s~e~i~~~~~~IR~~l~~~ 196 (237)
++- .+...--.+..+|- -.+..|+. + +.++..++.+..++.|.+.
T Consensus 240 ~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~ 292 (449)
T PRK09058 240 RDLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKA 292 (449)
T ss_pred HhcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 541 11111111233441 12333542 3 7788889999999999764
No 297
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=20.10 E-value=7.1e+02 Score=23.14 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=67.4
Q ss_pred HHHHHhCCCCeEEecc----cccccccc--cCHHHHHHHHHHHHHCCCeEEEE---eCCcHHHHhcCCcHHHHHHHHHHH
Q 026522 81 AEMLVNLEIPWVILGH----SERRLILN--ELNEFVGDKVAYALSQGLKVIAC---VGETLEQREAGSTMDVVAAQTKAI 151 (237)
Q Consensus 81 a~mLkd~G~~~viIGH----SERR~~f~--Etd~~V~~Kv~~al~~gl~pIvC---iGEt~e~r~~g~~~~vl~~Ql~~~ 151 (237)
.+.|+++|++.+-+|= .+.++.++ .+.+.+.+.++.+.+.|+..|-+ .|=+ |+|.+.+.+-++.+
T Consensus 106 l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlP------gqt~~~~~~~l~~~ 179 (370)
T PRK06294 106 IRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLP------TQSLSDFIVDLHQA 179 (370)
T ss_pred HHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCC------CCCHHHHHHHHHHH
Confidence 5678899999999983 23332232 35667888889999999975533 4533 45666666667666
Q ss_pred Hhc-cCCCCCeEEEEccc------ccccCCCCCCHHHHHHHHHHHHHHHHhc
Q 026522 152 ADR-VSSWSNIVLAYEPV------WAIGTGKVATPAQAQEVHFELRKWLLAN 196 (237)
Q Consensus 152 l~~-i~~~~~iiIAYEPv------WAIGtG~~as~e~i~~~~~~IR~~l~~~ 196 (237)
++- .++..--.+..||- ...|.-..++.+...++.+.+++.|.+.
T Consensus 180 ~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 231 (370)
T PRK06294 180 ITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQ 231 (370)
T ss_pred HccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHc
Confidence 542 11111122344552 1122223467777788999999988764
No 298
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=20.05 E-value=1.1e+02 Score=26.46 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCCCCeEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHhcCCcccc---CcccEEEcCCCCChhh
Q 026522 156 SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIA---AATRIIYGGISINVSH 218 (237)
Q Consensus 156 ~~~~~iiIAYEPvWAIGtG~~as~e~i~~~~~~IR~~l~~~~~~~~a---~~i~ILYGG~SV~~~N 218 (237)
+....+.|-|.|. . ... +..+.+++.+.+....... -.+|+.||| ++.|+=
T Consensus 40 P~~~sllv~fdp~-~-------~~~---~l~~~l~~~~~~~~~~~~~~r~~~iPV~Y~~-~~g~DL 93 (202)
T TIGR00370 40 PGMNNLTVFYDMY-E-------VYK---HLPQRLSSPWEEVKDYEVNRRIIEIPVCYGG-EFGPDL 93 (202)
T ss_pred cccEEEEEEECch-h-------hHH---HHHHHHHHHHhhccccCCCCeEEEEeeEeCC-CCCCCH
Confidence 3466788889993 1 122 2334455544332221111 148999999 987653
Done!