RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 026522
(237 letters)
>gnl|CDD|178175 PLN02561, PLN02561, triosephosphate isomerase.
Length = 253
Score = 430 bits (1108), Expect = e-155
Identities = 184/211 (87%), Positives = 192/211 (90%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
M RKFFVGGNWKCNGT EEVKKIV+ LNE +VPS DVVEVVVSPPFVFL LVKS LRP F
Sbjct: 1 MARKFFVGGNWKCNGTVEEVKKIVTTLNEAEVPSEDVVEVVVSPPFVFLPLVKSLLRPDF 60
Query: 61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
VAAQNCWVKKGGAFTGEISAEMLVNL IPWVILGHSERR +L E NEFVGDKVAYALSQ
Sbjct: 61 QVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQ 120
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
GLKVIACVGETLEQRE+GSTMDVVAAQTKAIAD+VS W+N+VLAYEPVWAIGTGKVATPA
Sbjct: 121 GLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWANVVLAYEPVWAIGTGKVATPA 180
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
QAQEVH ELRKWL N SPE+AA TRIIYGG
Sbjct: 181 QAQEVHDELRKWLHKNVSPEVAATTRIIYGG 211
>gnl|CDD|240365 PTZ00333, PTZ00333, triosephosphate isomerase; Provisional.
Length = 255
Score = 312 bits (802), Expect = e-108
Identities = 123/218 (56%), Positives = 154/218 (70%), Gaps = 5/218 (2%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PG 59
M RK FVGGNWKCNGT +K+++ N+ + ++V +VVV+PP + + LV+ L+
Sbjct: 2 MKRKPFVGGNWKCNGTKASIKELIDSFNKLKFDPNNV-DVVVAPPSLHIPLVQEKLKNKN 60
Query: 60 FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
F +++QN + GAFTGEISAEML +L I W ILGHSERR E NE V KV AL
Sbjct: 61 FKISSQNVSLTGSGAFTGEISAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALE 120
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVA 177
GLKVI C+GETLE+REAG T DV++ Q +AI +VS +W NIV+AYEPVWAIGTGKVA
Sbjct: 121 NGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAWDNIVIAYEPVWAIGTGKVA 180
Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
TP QAQEVH +RKWL ++A ATRIIYGG S+N
Sbjct: 181 TPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGG-SVN 217
>gnl|CDD|238190 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually homodimeric, but in some organisms
tetrameric, is ubiqitous and conserved in function
across eukaryotes, bacteria and archaea.
Length = 242
Score = 289 bits (741), Expect = 2e-99
Identities = 110/212 (51%), Positives = 131/212 (61%), Gaps = 4/212 (1%)
Query: 5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVA 63
V GNWK NGT E ++ LN S V EVVV+PPF +L V +L V
Sbjct: 1 PLVAGNWKMNGTLAEALELAKALNAVLKDESGV-EVVVAPPFTYLAAVAEALEGSKIKVG 59
Query: 64 AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
AQN + GAFTGEISAEML + +VI+GHSERR E +E V KV AL GL
Sbjct: 60 AQNVSPEDSGAFTGEISAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLT 119
Query: 124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
I CVGETLE+REAG T +VVAAQ A+ V + +V+AYEPVWAIGTGK A+P QAQ
Sbjct: 120 PILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVVIAYEPVWAIGTGKTASPEQAQ 179
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
EVH +RK LA E+A RI+YGG S+N
Sbjct: 180 EVHAFIRKL-LAELYGEVAEKVRILYGG-SVN 209
>gnl|CDD|234589 PRK00042, tpiA, triosephosphate isomerase; Provisional.
Length = 250
Score = 268 bits (689), Expect = 2e-91
Identities = 111/216 (51%), Positives = 137/216 (63%), Gaps = 6/216 (2%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
RK + GNWK N T E K +V L +P +D VEV V+PPF L VK +L+
Sbjct: 1 RKPIIAGNWKMNKTLAEAKALVEELKA-ALPDADGVEVAVAPPFTALASVKEALKGSNIK 59
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
+ AQN + GAFTGEISAEML +L + +VI+GHSERR E +E V KV AL G
Sbjct: 60 LGAQNVHPEDSGAFTGEISAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAG 119
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATP 179
L I CVGETLE+REAG T +VVA Q +A +S ++N+V+AYEPVWAIGTGK ATP
Sbjct: 120 LTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFANLVIAYEPVWAIGTGKTATP 179
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
QAQEVH +R LA E+A RI+YGG S+
Sbjct: 180 EQAQEVHAFIRAV-LAELYGEVAEKVRILYGG-SVK 213
>gnl|CDD|215732 pfam00121, TIM, Triosephosphate isomerase.
Length = 242
Score = 258 bits (661), Expect = 2e-87
Identities = 108/213 (50%), Positives = 138/213 (64%), Gaps = 5/213 (2%)
Query: 5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFHVA 63
+ GNWK N T E ++ L + + V EVVV+PPF +L VK +L+ V
Sbjct: 1 PIIIGNWKMNKTLAEALELAKALLAAALKNDGV-EVVVAPPFTYLSPVKQALKGSNIKVG 59
Query: 64 AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
AQN + GAFTGE+SAEML +L + +VI+GHSERR E +E V KV AL GL
Sbjct: 60 AQNVSAEDSGAFTGEVSAEMLKDLGVSYVIIGHSERRQYFGETDEIVAKKVKAALKNGLT 119
Query: 124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVS-SWSNIVLAYEPVWAIGTGKVATPAQA 182
+ CVGETLE+REAG T++V+ Q KAI + W N+++AYEPVWAIGTGKVATP QA
Sbjct: 120 PVLCVGETLEEREAGKTLEVLKRQLKAILAGLDEEWKNLIIAYEPVWAIGTGKVATPEQA 179
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
QEVH +RK+ LA S E+A RI+YGG S+N
Sbjct: 180 QEVHAFIRKY-LAELSKEVAEEVRILYGG-SVN 210
>gnl|CDD|223227 COG0149, TpiA, Triosephosphate isomerase [Carbohydrate transport
and metabolism].
Length = 251
Score = 244 bits (626), Expect = 7e-82
Identities = 104/214 (48%), Positives = 127/214 (59%), Gaps = 4/214 (1%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPG-FH 61
RK V GNWK N T E K +V L V D VEV ++PPF L V + G
Sbjct: 2 RKPLVAGNWKMNKTAAEAKALVEALAAELVAKEDDVEVAIAPPFTDLRRVAELVEIGNIK 61
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
V AQN + GAFTGEISAEML +L +V++GHSERRL E +E + KV A G
Sbjct: 62 VGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAG 121
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQ 181
L I CVGETLE+REAG T++V+ Q A +S +NIV+AYEPVWAIGTGK A+PA
Sbjct: 122 LTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIVIAYEPVWAIGTGKSASPAD 181
Query: 182 AQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
A+EVH +R L E RI+YGG S+
Sbjct: 182 AEEVHAFIRAVLAELFGAE--EKVRILYGG-SVK 212
>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase.
Length = 315
Score = 242 bits (619), Expect = 4e-80
Identities = 134/212 (63%), Positives = 159/212 (75%), Gaps = 3/212 (1%)
Query: 4 KFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVA 63
KFFVGGNWKCNGT + + K++S LN + + V+VVVSPPFV++ VKSSL ++
Sbjct: 65 KFFVGGNWKCNGTKDSIAKLISDLNSATLEAD--VDVVVSPPFVYIDQVKSSLTDRIDIS 122
Query: 64 AQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLK 123
QN WV KGGAFTGEIS E L +L WVILGHSERR ++ E +EF+G K AYALS+GL
Sbjct: 123 GQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLG 182
Query: 124 VIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
VIAC+GE LE+REAG T DV AQ KA AD V SW NIV+AYEPVWAIGTGKVA+P QAQ
Sbjct: 183 VIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQ 242
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
EVH +R WL N S E+A+ TRIIYGG S+N
Sbjct: 243 EVHVAVRGWLKKNVSEEVASKTRIIYGG-SVN 273
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 206 bits (527), Expect = 7e-63
Identities = 103/218 (47%), Positives = 130/218 (59%), Gaps = 10/218 (4%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVV--EVVVSPPFVFLGLVKSSLR-PG 59
RK + GNWK N TP E K+ V+ L EVVV PPF L VK ++
Sbjct: 397 RKPIIAGNWKMNKTPAEAKEFVNEL----KKYVKDAQAEVVVCPPFTALPSVKEAVDGSN 452
Query: 60 FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
+ AQN + ++ GA+TGEIS ML + + +VI+GHSERR E +E V KV AL
Sbjct: 453 IKLGAQNVFYEEKGAYTGEISGPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALK 512
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVA 177
GL I CVGETL++RE+G T DVV Q KA + +S+ +V+AYEPVWAIGTGKVA
Sbjct: 513 AGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQVKKVVIAYEPVWAIGTGKVA 572
Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
TP QAQEVH +RK + E A RI+YGG S+
Sbjct: 573 TPEQAQEVHAFIRKLVAELYGEEAARKVRILYGG-SVK 609
>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase. Triosephosphate
isomerase (tim/TPIA) is the glycolytic enzyme that
catalyzes the reversible interconversion of
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate. The active site of the enzyme is located
between residues 240-258 of the model
([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the
active site residue. There is a slight deviation from
this sequence within the archeal members of this family
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 205
Score = 178 bits (453), Expect = 2e-56
Identities = 64/207 (30%), Positives = 91/207 (43%), Gaps = 32/207 (15%)
Query: 6 FVGGNWK-CNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAA 64
V GNWK N + V+ + E +V S V V V+PPFV L ++K + V A
Sbjct: 1 LVIGNWKTYNESRGMRALEVAKIAE-EVASEAGVAVAVAPPFVDLPMIKREVE--IPVYA 57
Query: 65 QNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124
Q+ GA TGEISAEML ++ ++ HSERR+ L + + K+A GL
Sbjct: 58 QHVDAVLSGAHTGEISAEMLKDIGAKGTLINHSERRMKLAD----IEKKIARLKELGLTS 113
Query: 125 IACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQE 184
+ C + V A A V+A EP IGTG +PAQ +
Sbjct: 114 VVCT-------------NNVLTTAAAAA-----LEPDVVAVEPPELIGTGIPVSPAQPEV 155
Query: 185 VHFELRKWLLANTSPEIAAATRIIYGG 211
VH +R E+ + R++ G
Sbjct: 156 VHGSVR------AVKEVNESVRVLCGA 176
>gnl|CDD|184749 PRK14566, PRK14566, triosephosphate isomerase; Provisional.
Length = 260
Score = 167 bits (425), Expect = 1e-51
Identities = 87/220 (39%), Positives = 122/220 (55%), Gaps = 15/220 (6%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIV-SVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSL----- 56
R+ V GNWK NG+ +++ + Q +D EVV+ PP ++L V+ L
Sbjct: 4 RRPMVAGNWKMNGSAALAQELFKKFAGKLQ---NDSAEVVLCPPSIYLESVRQLLEANKE 60
Query: 57 ---RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDK 113
+ AQN GA+TGE+S +ML + +VI+GHSERR + E + V +K
Sbjct: 61 ALDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVIIGHSERRRMYGETSNIVAEK 120
Query: 114 VAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVS-SWSNIVLAYEPVWAI 171
A A GL I CVGE+ REA T +V+A + I + ++ N ++AYEP+WA+
Sbjct: 121 FAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAFDNAIIAYEPLWAV 180
Query: 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
GTGK ATP QAQEVH +RK L+ SP I RI+YGG
Sbjct: 181 GTGKSATPEQAQEVHAFIRK-RLSEVSPFIGENIRILYGG 219
>gnl|CDD|237758 PRK14565, PRK14565, triosephosphate isomerase; Provisional.
Length = 237
Score = 143 bits (362), Expect = 2e-42
Identities = 81/241 (33%), Positives = 112/241 (46%), Gaps = 25/241 (10%)
Query: 5 FFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAA 64
F + NWK NG + L+ + +++V+ PPF + P + A
Sbjct: 3 FLIVANWKMNGDFSLFSSFLKELSNKLANNEITLKLVICPPFTAMSSFVE-CNPNIKLGA 61
Query: 65 QNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKV 124
QNC+ G +TGEISA+ML +VILGHSERR +E + + K A+ GL
Sbjct: 62 QNCFYGSSGGYTGEISAKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIP 121
Query: 125 IACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQE 184
I CVGETLE RE G T DV+ Q + + ++AYEPVWAIG + + E
Sbjct: 122 IICVGETLEDRENGMTKDVLLEQCS---NCLPKHGEFIIAYEPVWAIGGSTIPSNDAIAE 178
Query: 185 VHFELRKWLLANTSPEIAAATRIIYGG----------ISIN-VSHVLV-HLLLSFGCFYN 232
FE+ + + S + IIYGG SIN +S VLV L F
Sbjct: 179 A-FEIIR---SYDS-----KSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCK 229
Query: 233 V 233
+
Sbjct: 230 I 230
>gnl|CDD|173031 PRK14567, PRK14567, triosephosphate isomerase; Provisional.
Length = 253
Score = 134 bits (339), Expect = 8e-39
Identities = 78/205 (38%), Positives = 117/205 (57%), Gaps = 4/205 (1%)
Query: 9 GNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQNCW 68
GNWK NG +K++ S +++ Q +S V + V P V++ V S L V QN
Sbjct: 7 GNWKMNGNSTSIKELCSGISQVQYDTSRVA-IAVFPSSVYVKEVISQLPEKVGVGLQNIT 65
Query: 69 VKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACV 128
GA+TGEISA ML ++ ++++GHSERR + E +E V K+ + + + C+
Sbjct: 66 FYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCI 125
Query: 129 GETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
GE+L+ R++G V+A Q I + +S + +V+AYEPVWAIGTG VA+ Q QE H
Sbjct: 126 GESLDDRQSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETH 185
Query: 187 FELRKWLLANTSPEIAAATRIIYGG 211
+R LLA +A +I+YGG
Sbjct: 186 QFIRS-LLAKVDERLAKNIKIVYGG 209
>gnl|CDD|184898 PRK14905, PRK14905, triosephosphate isomerase/PTS system
glucose/sucrose-specific transporter subunit IIB;
Provisional.
Length = 355
Score = 112 bits (280), Expect = 3e-29
Identities = 77/224 (34%), Positives = 112/224 (50%), Gaps = 10/224 (4%)
Query: 1 MGRKFFVGGNWKC-NGTPEEVKKIVSVLNEGQVPSSDV-VEVVVSPPFVFLG----LVKS 54
M +K + G N K G E V + +L + SD +E+ V P ++ L S
Sbjct: 1 MAKKIYFGTNLKMYKGNAETVDYLSELLAFAEKFKSDYDIELFVIPSYIALKDAVEAAAS 60
Query: 55 -SLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDK 113
+ P + AQN K G FTGEIS ML L I V++GHSERR +L E ++ +K
Sbjct: 61 ETGHPKIKIGAQNMNAKDKGQFTGEISPLMLKELGIELVMIGHSERRHVLKETDQEENEK 120
Query: 114 VAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAI 171
V AL G + C+GETLEQ+ + +V+ Q K VS+ ++ +AYEPVWAI
Sbjct: 121 VLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQLPHLFIAYEPVWAI 180
Query: 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
G G + A+ + + K L E + ++YGG S+N
Sbjct: 181 GEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGG-SVN 223
>gnl|CDD|185389 PRK15492, PRK15492, triosephosphate isomerase; Provisional.
Length = 260
Score = 93.5 bits (232), Expect = 5e-23
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 10/202 (4%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNE--GQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
+K + G N K + ++ L+E +P+ +E+ V P F + ++
Sbjct: 2 KKIYFGTNLKMYKGIADATDFLAKLSELADDIPADKDIELFVIPSFTAIQDAIAATLAIP 61
Query: 61 H-----VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVA 115
H + AQN G FTG+IS ML + V++GHSERR E ++ KV
Sbjct: 62 HDHPIIIGAQNMNPNDNGQFTGDISPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVL 121
Query: 116 YALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGT 173
AL + CVGETLEQ+ G + +++ Q K ++ + + +AYEPVWAIG
Sbjct: 122 AALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINPDQLAKLRIAYEPVWAIGE 181
Query: 174 GKV-ATPAQAQEVHFELRKWLL 194
+ A+ A E H +++ L+
Sbjct: 182 AGIPASADYADEKHAVIKQCLI 203
>gnl|CDD|235274 PRK04302, PRK04302, triosephosphate isomerase; Provisional.
Length = 223
Score = 54.1 bits (131), Expect = 6e-09
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 38 VEVVVSPPFVFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHS 97
V + V+P + + V + V AQ+ + G+ TG I E + + ++ HS
Sbjct: 37 VRIAVAPQALDIRRVAEEV--DIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHS 94
Query: 98 ERRLILNELNEFVGDKVAYALSQGLKVIACV 128
ERRL L + + V A GL+ + CV
Sbjct: 95 ERRLTLAD----IEAVVERAKKLGLESVVCV 121
>gnl|CDD|217511 pfam03358, FMN_red, NADPH-dependent FMN reductase.
Length = 151
Score = 29.9 bits (68), Expect = 0.62
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 144 VAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWL 193
V K D +S L +PV + G + +LR+ L
Sbjct: 84 VPGALKNAIDWLSRDGGKELRGKPVAIVSVG--GGRSGGLRALEQLRQVL 131
>gnl|CDD|214566 smart00216, VWD, von Willebrand factor (vWF) type D domain. Von
Willebrand factor contains several type D domains: D1
and D2 are present within the N-terminal propeptide
whereas the remaining D domains are required for
multimerisation.
Length = 163
Score = 30.1 bits (68), Expect = 0.65
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 6/63 (9%)
Query: 10 NWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVV------VSPPFVFLGLVKSSLRPGFHVA 63
N C G +K + LN ++ D V VS P+ G ++
Sbjct: 54 NVPCGGGATCLKSVKVELNGDEIELKDDNGKVTVNGQQVSLPYKTSDGSIQIRSSGGYLV 113
Query: 64 AQN 66
Sbjct: 114 VIT 116
>gnl|CDD|237766 PRK14609, PRK14609, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 269
Score = 29.6 bits (67), Expect = 1.4
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 166 EPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGI 212
+PV+A G G + +P L + +A P+I +T Y GI
Sbjct: 142 KPVYATGIGDIFSPID-----LSLSGYYIALVKPDIHVSTAEAYAGI 183
>gnl|CDD|226105 COG3576, COG3576, Predicted flavin-nucleotide-binding protein
structurally related to pyridoxine 5'-phosphate oxidase
[General function prediction only].
Length = 173
Score = 28.2 bits (63), Expect = 2.8
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 128 VGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGT 173
GET Q AG M + T+ + D + + + + A+ T
Sbjct: 3 SGETAVQLRAGYKMRTMVKLTQKMKDLLENHYREFIQTSQLAALAT 48
>gnl|CDD|227901 COG5614, COG5614, Bacteriophage head-tail adaptor [General function
prediction only].
Length = 109
Score = 26.3 bits (58), Expect = 6.8
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 131 TLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELR 190
TL+ R T D T+ D + W+ I +GK A A+ +R
Sbjct: 13 TLQNRVL--TRDAAGEMTEEWVDCGTLWAAI----RGR----SGKEFMAAGAEMAQATIR 62
Query: 191 KWLLANTSPEIAAATRIIYGGISINVSHVLV 221
W+ +I AA+R+ +N+ V
Sbjct: 63 IWIRYRR--DITAASRLHVLSRILNIVGVPD 91
>gnl|CDD|233914 TIGR02538, type_IV_pilB, type IV-A pilus assembly ATPase PilB.
This model describes a protein of type IV pilus
biogenesis designated PilB in Pseudomonas aeruginosa but
PilF in Neisseria gonorrhoeae; the more common usage,
reflected here, is PilB. This protein is an ATPase
involved in protein export for pilin assembly and is
closely related to GspE (TIGR02533) of type II
secretion, also called the main terminal branch of the
general secretion pathway. Note that type IV pilus
systems are often divided into type IV-A and IV-B, with
the latter group including bundle-forming pilus,
mannose-sensitive hemagglutinin, etc. Members of this
family are found in type IV-A systems [Cell envelope,
Surface structures, Protein fate, Protein and peptide
secretion and trafficking].
Length = 564
Score = 27.3 bits (61), Expect = 8.4
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 10/61 (16%)
Query: 175 KVATPAQAQEVHFELRK-------WLLAN---TSPEIAAATRIIYGGISINVSHVLVHLL 224
+ T QAQ E + +L+ N ++A +G ++++ L
Sbjct: 10 GLLTETQAQAALEEAQASGQPLVQYLIQNGLLDPKQLAEFLSREFGVPLLDLNAFDPDAL 69
Query: 225 L 225
Sbjct: 70 P 70
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,279,803
Number of extensions: 1172833
Number of successful extensions: 1033
Number of sequences better than 10.0: 1
Number of HSP's gapped: 998
Number of HSP's successfully gapped: 26
Length of query: 237
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 143
Effective length of database: 6,768,326
Effective search space: 967870618
Effective search space used: 967870618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)