RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 026522
(237 letters)
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Length = 259
Score = 360 bits (927), Expect = e-128
Identities = 114/211 (54%), Positives = 146/211 (69%), Gaps = 2/211 (0%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
M RKF VGGNWK NG +++ +I+ L G + EVVV P ++L LV++ +
Sbjct: 1 MARKFVVGGNWKMNGDKKQINEIIGFLKSGPLNQD--TEVVVGVPAIYLELVRTCVPASI 58
Query: 61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
VAAQNC+ GAFTGEIS M+ ++ WVILGHSERR I E +E + +KV +AL
Sbjct: 59 GVAAQNCYKVPKGAFTGEISPAMIKDVGADWVILGHSERRQIFGESDELIAEKVCHALES 118
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
GLKVIAC+GETLE+REAG T +VV QTKAIA +V+ WSN+V+AYEPVWAIGTGK ATP
Sbjct: 119 GLKVIACIGETLEEREAGKTEEVVFRQTKAIAAKVNDWSNVVIAYEPVWAIGTGKTATPQ 178
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
QAQ+VH LR+W+ N ++ + RI YGG
Sbjct: 179 QAQDVHKALRQWICENIDAKVGNSIRIQYGG 209
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; 1.70A {Caenorhabditis elegans}
SCOP: c.1.1.1
Length = 275
Score = 360 bits (927), Expect = e-127
Identities = 116/211 (54%), Positives = 142/211 (67%), Gaps = 2/211 (0%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
+ RKFFVGGNWK NG V IV+ LN SS V+VVV+PP +L KS L+ G
Sbjct: 21 LTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSS--VDVVVAPPAPYLAYAKSKLKAGV 78
Query: 61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
VAAQNC+ GAFTGEIS M+ +L + WVILGHSERR + E + + +K +AL
Sbjct: 79 LVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEA 138
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
G+KV+ C+GE LE+REAG T DV Q +AI D+ SW NIV+AYEPVWAIGTGK A+
Sbjct: 139 GIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGE 198
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
QAQEVH +R +L SP +A ATRIIYGG
Sbjct: 199 QAQEVHEWIRAFLKEKVSPAVADATRIIYGG 229
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate,
META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A
{Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A
1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A
3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A
3pvf_A 3py2_A 2vfd_A 2vfe_A*
Length = 248
Score = 359 bits (924), Expect = e-127
Identities = 91/211 (43%), Positives = 126/211 (59%), Gaps = 1/211 (0%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
M RK+FV NWKCNGT E +K + + N S + +VVV P V + L+ F
Sbjct: 1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKL-DVVVFPVSVHYDHTRKLLQSKF 59
Query: 61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
QN G++TGE+SAE+ +L I +VI+GH ERR +E +E V +K+ +L
Sbjct: 60 STGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKN 119
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
LK + C GE+LEQRE T++V+ Q KA D + ++ N++L YEP+WAIGTGK ATP
Sbjct: 120 NLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPE 179
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
QAQ VH E+RK + + A RI+YGG
Sbjct: 180 QAQLVHKEIRKIVKDTCGEKQANQIRILYGG 210
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis,
glycolysis; 2.40A {Rhipicephalus microplus}
Length = 249
Score = 356 bits (916), Expect = e-126
Identities = 105/209 (50%), Positives = 137/209 (65%), Gaps = 2/209 (0%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
R+F VGGNWK +G+ ++ I + L + + VEV+V+ P +L +S L P +
Sbjct: 4 RRFCVGGNWKMHGSKNSIRDICNTLKGASLDPN--VEVIVACPAPYLDYCRSLLPPSVAL 61
Query: 63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
AAQNC+ + GAFTGEIS M+ + WVILGHSERR + E + +G+K+ +AL GL
Sbjct: 62 AAQNCYKVEQGAFTGEISPGMIKDCGGQWVILGHSERRHVFKEDDVLIGEKIKHALESGL 121
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
VIAC+GE LE REAG T +V Q K IA V WS +V+AYEPVWAIGTGK ATP QA
Sbjct: 122 NVIACIGELLEDREAGRTEEVCFRQIKHIASNVKDWSKVVIAYEPVWAIGTGKTATPDQA 181
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
QEVH ++R WL N S ++A+ RI YGG
Sbjct: 182 QEVHSKVRNWLSTNVSADVASKVRIQYGG 210
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the
ligand-free state, conformational heterogeneity,
TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1
PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1*
8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A*
1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Length = 248
Score = 355 bits (913), Expect = e-126
Identities = 118/209 (56%), Positives = 147/209 (70%), Gaps = 2/209 (0%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
RKFFVGGNWK NG + + ++++ LN +VP+ EVV +PP ++ + L P V
Sbjct: 4 RKFFVGGNWKMNGRKKNLGELITTLNAAKVPAD--TEVVCAPPTAYIDFARQKLDPKIAV 61
Query: 63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
AAQNC+ GAFTGEIS M+ + WV+LGHSERR + E +E +G KVA+ALS+GL
Sbjct: 62 AAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGL 121
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
VIAC+GE L++REAG T VV QTK IAD V WS +VLAYEPVWAIGTGK ATP QA
Sbjct: 122 GVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQA 181
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGG 211
QEVH +LR WL +N S +A +TRIIYGG
Sbjct: 182 QEVHEKLRGWLKSNVSDAVAQSTRIIYGG 210
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures,
university of washingto niaid, I structural genomics;
1.55A {Cryptosporidium parvum iowa II}
Length = 271
Score = 353 bits (907), Expect = e-124
Identities = 92/215 (42%), Positives = 133/215 (61%), Gaps = 7/215 (3%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR--- 57
M RK+FVGGN+KCNGT E +K ++ + + + EV V P + + LVK
Sbjct: 22 MSRKYFVGGNFKCNGTKESLKTLIDSFKQVESSN---SEVYVFPTSLHISLVKEFFGNDH 78
Query: 58 -PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAY 116
F + +QN GAFTGE+S EML ++++ ++GHSERR +E ++ V +KV
Sbjct: 79 PGVFKIGSQNISCTGNGAFTGEVSCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKK 138
Query: 117 ALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKV 176
L GLK++ C+GE+L +RE G T DV+ Q VS SN+V+AYEP+WAIGTG V
Sbjct: 139 GLENGLKIVLCIGESLSERETGKTNDVIQKQLTEALKDVSDLSNLVIAYEPIWAIGTGVV 198
Query: 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
ATP QAQE H +R+++ +P++++ RIIYGG
Sbjct: 199 ATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGG 233
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia
intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Length = 257
Score = 350 bits (901), Expect = e-124
Identities = 96/215 (44%), Positives = 137/215 (63%), Gaps = 7/215 (3%)
Query: 2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSL-RPGF 60
R+ F+GGN+KCNG+ + +K V+ + ++P S V+VV++P V L ++
Sbjct: 3 ARRPFIGGNFKCNGSLDFIKSHVAAIAAHKIPDS--VDVVIAPSAVHLSTAIAANTSKQL 60
Query: 61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
+AAQN +++ GA+TGE S EML ++ + VI+GHSERR I+ E +E K AL +
Sbjct: 61 RIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEK 120
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS----SWSNIVLAYEPVWAIGTGKV 176
G+ VI CVGETL++R+A TM+V AQ +A+ + W +V+AYEPVW+IGTG V
Sbjct: 121 GMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVV 180
Query: 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
ATP QA+EVH LRKW + + E A RIIYGG
Sbjct: 181 ATPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGG 215
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas
vaginalis} PDB: 3qsr_A
Length = 255
Score = 347 bits (894), Expect = e-122
Identities = 100/212 (47%), Positives = 138/212 (65%), Gaps = 5/212 (2%)
Query: 3 RKFFVGGNWKCN-GTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFH 61
R FFVGGNWK N T +E +K+V +LN +V + VEVVV+ PFVFL ++ LR +
Sbjct: 5 RTFFVGGNWKANPKTVQEAEKLVEMLNGAKVEGN--VEVVVAAPFVFLPTLQQKLRKDWK 62
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
V+A+N + K GAFTGE++ M+ + I W ILGHSERR IL E +EF+ K +AL G
Sbjct: 63 VSAENVFTKPNGAFTGEVTVPMIKSFGIEWTILGHSERRDILKEDDEFLAAKAKFALENG 122
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATP 179
+K+I C GE L +REAG + V+AQ + + + + W ++V+AYEP+WAIGTGKVA+
Sbjct: 123 MKIIYCCGEHLSEREAGKASEFVSAQIEKMIPAIPAGKWDDVVIAYEPIWAIGTGKVAST 182
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
AQE+ +R L A +IA RI+YGG
Sbjct: 183 QDAQEMCKVIRDILAAKVGADIANKVRILYGG 214
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition
state analogue, glycolysis, pentose shunt,
gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A
{Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A
2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A
1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Length = 251
Score = 347 bits (893), Expect = e-122
Identities = 110/214 (51%), Positives = 143/214 (66%), Gaps = 6/214 (2%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PG 59
+ NWKCNGT ++K+V V NE + V+ VV+P FV + LV++ LR P
Sbjct: 3 AKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHD--VQCVVAPTFVHIPLVQAKLRNPK 60
Query: 60 FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
+ ++AQN K G AFTGE+S +L ++ + WVILGHSERR E +E V KV+ A
Sbjct: 61 YVISAQNAIAKSG-AFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACK 119
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVA 177
QG VIAC+GETL+QREA T VV +QT AIA +++ +W+ +VLAYEPVWAIGTGKVA
Sbjct: 120 QGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVA 179
Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
TP QAQEVH LRKW+ N ++AA RI+YGG
Sbjct: 180 TPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGG 213
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome,
TIM-barrel, gluconeogenesis, lipid synthesis, atomic
resolution; 1.15A {Trypanosoma brucei brucei} PDB:
2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A
1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A
2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Length = 250
Score = 342 bits (879), Expect = e-120
Identities = 96/212 (45%), Positives = 132/212 (62%), Gaps = 6/212 (2%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFH 61
+ NWKCNG+ + + +++ + N + V+ VV+ FV L + K L P F
Sbjct: 4 PQPIAAANWKCNGSQQSLSELIDLFNSTSINHD--VQCVVASTFVHLAMTKERLSHPKFV 61
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
+AAQN K G AFTGE+S +L + + W++LGHSERR E NE V DKVA A++ G
Sbjct: 62 IAAQNAIAKSG-AFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASG 120
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATP 179
VIAC+GETL++RE+G T VV Q AIA ++ W+ +V+AYE VWAIGTGKVATP
Sbjct: 121 FMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATP 180
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
QAQE H +R W+ + ++A RI+YGG
Sbjct: 181 QQAQEAHALIRSWVSSKIGADVAGELRILYGG 212
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability;
1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Length = 261
Score = 340 bits (874), Expect = e-119
Identities = 115/220 (52%), Positives = 145/220 (65%), Gaps = 10/220 (4%)
Query: 1 MG-RKFFVGGNWKCNGTPEEVKKIVSVLNEG-QVPSSDVVEVVVSPPFVFLGLVKSSLR- 57
MG KF VGGNWKCNGT ++ + + + VEV+V PF+++ V+ L
Sbjct: 1 MGAGKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAG 60
Query: 58 ----PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDK 113
V+A+N W K G A+TGE+ MLV+ ++P+VILGHSERR I +E NE V +K
Sbjct: 61 EANGANILVSAENAWTKSG-AYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEK 119
Query: 114 VAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAI 171
V A+ GLKVIAC+GET QR A T +VVAAQ KAI + +S +W NI+LAYEPVWAI
Sbjct: 120 VKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAI 179
Query: 172 GTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
GTGK ATP QAQEVH +RKW+ N S E+A ATRI YGG
Sbjct: 180 GTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGG 219
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A
{Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Length = 255
Score = 327 bits (840), Expect = e-114
Identities = 85/212 (40%), Positives = 115/212 (54%), Gaps = 5/212 (2%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFH 61
R V GNWK NG+ V ++VS L + + V ++PP +++ + K
Sbjct: 2 RHPLVMGNWKLNGSRHMVHELVSNLRKE-LAGVAGCAVAIAPPEMYIDMAKREAEGSHIM 60
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
+ AQN + GAFTGE SA ML ++ ++I+GHSERR E +E + K A QG
Sbjct: 61 LGAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQG 120
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATP 179
L + C+GET + EAG T +V A Q A+ ++ V+AYEPVWAIGTGK ATP
Sbjct: 121 LTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATP 180
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
AQAQ VH +R +A IA I YGG
Sbjct: 181 AQAQAVHKFIRDH-IAKVDANIAEQVIIQYGG 211
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A
{Thermotoga maritima} SCOP: c.1.1.1
Length = 255
Score = 321 bits (826), Expect = e-112
Identities = 98/214 (45%), Positives = 124/214 (57%), Gaps = 4/214 (1%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-G 59
+ RK + GNWK + T E KK VS+L + E+VV PPF L V L
Sbjct: 1 ITRKLILAGNWKMHKTISEAKKFVSLLVNE-LHDVKEFEIVVCPPFTALSEVGEILSGRN 59
Query: 60 FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
+ AQN + + GAFTGEIS ML + + +VI+GHSERR I E +EF+ KV L
Sbjct: 60 IKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLE 119
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVA 177
+G+ I CVGETLE+RE G T VV Q + + +V+AYEPVWAIGTG+VA
Sbjct: 120 KGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVA 179
Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
TP QAQEVH +RK L E A + RI+YGG
Sbjct: 180 TPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGG 213
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome,
gluconeogenesis, lipid synthesis, monomeric mutant,
glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Length = 244
Score = 319 bits (821), Expect = e-112
Identities = 97/214 (45%), Positives = 126/214 (58%), Gaps = 13/214 (6%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PG 59
+ NWKCNG+ + ++ LN V+ VV+P F+ + + K+ L P
Sbjct: 3 SKPQPIAAANWKCNGSESLLVPLIETLNAATFDHD--VQCVVAPTFLHIPMTKARLTNPK 60
Query: 60 FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
F +AAQN + L + I WV+LGHSERRL E NE V +KVA A +
Sbjct: 61 FQIAAQNAG--------NADALASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACA 112
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVA 177
G VI CVGET E+REAG T VV Q A+A ++S +WS +V+AYEPVWAIGTGKVA
Sbjct: 113 AGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVA 172
Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
TP QAQEVH LR+W+ + +IAA RI+YGG
Sbjct: 173 TPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGG 206
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone
phosphate, michaelis complex; HET: FTR 13P; 1.20A
{Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A*
1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Length = 247
Score = 319 bits (819), Expect = e-111
Identities = 98/211 (46%), Positives = 141/211 (66%), Gaps = 3/211 (1%)
Query: 2 GRKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGF 60
R FFVGGN+K NG+ + +K+IV LN +P + VEVV+ PP +L S ++ P
Sbjct: 1 ARTFFVGGNFKLNGSKQSIKEIVERLNTASIPEN--VEVVICPPATYLDYSVSLVKKPQV 58
Query: 61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
V AQN ++K GAFTGE S + + ++ +VILGHSERR +E ++F+ DK +AL Q
Sbjct: 59 TVGAQNAYLKASGAFTGENSVDQIKDVGAKYVILGHSERRSYFHEDDKFIADKTKFALGQ 118
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
G+ VI C+GETLE+++AG T+DVV Q A+ + V ++N+V+AYEPV AIGTG ATP
Sbjct: 119 GVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVXAIGTGLAATPE 178
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
AQ++H +RK+L + + A+ RI+YGG
Sbjct: 179 DAQDIHASIRKFLASKLGDKAASELRILYGG 209
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A
{Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Length = 256
Score = 299 bits (769), Expect = e-103
Identities = 83/214 (38%), Positives = 116/214 (54%), Gaps = 7/214 (3%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP---G 59
R V GNWK NG+ E V +++ LN + V+V V+PP +F+ L + +L
Sbjct: 2 RHPVVMGNWKLNGSKEMVVDLLNGLNAE-LEGVTGVDVAVAPPALFVDLAERTLTEAGSA 60
Query: 60 FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALS 119
+ AQN + GAFTG++S ML +I+GHSERR E +EFV K A+
Sbjct: 61 IILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKE 120
Query: 120 QGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVA 177
GL + C+GE+ Q EAG TM V A Q A+ + + ++AYEP+WAIGTGK A
Sbjct: 121 NGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAA 180
Query: 178 TPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
T AQ +H ++R +A S +A I YGG
Sbjct: 181 TAEDAQRIHAQIRAH-IAEKSEAVAKNVVIQYGG 213
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis,
pentose; HET: CIT; 1.90A {Staphylococcus aureus}
Length = 254
Score = 296 bits (760), Expect = e-102
Identities = 83/215 (38%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPG--- 59
R + GNWK N T +E K V+ L +P S VE V+ P + L + ++++ G
Sbjct: 3 RTPIIAGNWKMNKTVQEAKDFVNALPT--LPDSKEVESVICAPAIQLDALTTAVKEGKAQ 60
Query: 60 -FHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYAL 118
+ AQN + + GAFTGE S L +L + +V++GHSERR + +E +E + K
Sbjct: 61 GLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIF 120
Query: 119 SQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKV 176
G+ I CVGET E+RE+G DVV Q K +S ++V+AYEP+WAIGTGK
Sbjct: 121 KHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKS 180
Query: 177 ATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
+T A E+ +R+ + +S E++ ATRI YGG
Sbjct: 181 STSEDANEMCAFVRQTIADLSSKEVSEATRIQYGG 215
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt,
gluconeogenesis, lipid synthesis, fatty acid
biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Length = 233
Score = 291 bits (747), Expect = e-100
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 17/208 (8%)
Query: 6 FVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQ 65
N+K + + L + + V V P F L F + Q
Sbjct: 3 IAMANFKSAMPIFKSHAYLKELEKT-LKPQHFDRVFVFPDFFGLLPNSFL---HFTLGVQ 58
Query: 66 NCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVI 125
N + + GAFTGEI+++ L L+I +++GHSERR +L E F+ +K + S+ K++
Sbjct: 59 NAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRTLLKESPSFLKEKFDFFKSKNFKIV 118
Query: 126 ACVGETLEQREAGS--TMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQ 183
C+GE L RE G + ++ Q + I ++ N+V+AYEP+WAIGT K A+
Sbjct: 119 YCIGEELTTREKGFKAVKEFLSEQLENID---LNYPNLVVAYEPIWAIGTKKSASLEDIY 175
Query: 184 EVHFELRKWLLANTSPEIAAATRIIYGG 211
H L++ + T ++YGG
Sbjct: 176 LTHGFLKQI--------LNQKTPLLYGG 195
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW,
gluconeogenesis, glycolysis, pentose shunt; 1.60A
{Bartonella henselae}
Length = 275
Score = 284 bits (730), Expect = 1e-97
Identities = 73/210 (34%), Positives = 107/210 (50%), Gaps = 2/210 (0%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFH 61
+ F+ GNWK NGT E + ++ ++ + E ++ P L L
Sbjct: 26 IRPFIAGNWKMNGTGESLGELRAIAAGISSDLGRLFEALICVPATLLSRAFDILGGENIL 85
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
+ QNC G +TG+ISA ML VI+GHSERR + E + V KV A G
Sbjct: 86 LGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVRAKVQAAWRAG 145
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQ 181
L + CVGETLE+R++ +DV+ Q + ++ NI++AYEPVWA+GTG AT A
Sbjct: 146 LVALICVGETLEERKSNKVLDVLTRQLEGSLPDGATAENIIIAYEPVWAVGTGNTATSAD 205
Query: 182 AQEVHFELRKWLLANTSPEIAAATRIIYGG 211
EVH + + + + A R++YGG
Sbjct: 206 VAEVHAFIHHK-MHSRFGDEGAKIRLLYGG 234
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic
triose-phosphate, glycolysis; 2.40A {Geobacillus
stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Length = 252
Score = 281 bits (722), Expect = 1e-96
Identities = 90/212 (42%), Positives = 118/212 (55%), Gaps = 4/212 (1%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
RK + GNWK NGT E + V + VP +D V VV PF+FL + +
Sbjct: 1 RKPIIAGNWKMNGTLAEAVQFVEDVKG-HVPPADEVISVVCAPFLFLDRLVQAADGTDLK 59
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
+ AQ GA+TGE+S ML +L + +VILGHSERR + E +E V KV A ++G
Sbjct: 60 IGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRG 119
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATP 179
L I C GE+LE+REAG T VVA+Q + ++ V+AYEP+WAIGTGK +TP
Sbjct: 120 LIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTP 179
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
A V +R + PE A A RI YGG
Sbjct: 180 EDANSVCGHIRSVVSRLFGPEAAEAIRIQYGG 211
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium
tuberculosis} PDB: 3tao_A* 3gvg_A
Length = 267
Score = 278 bits (713), Expect = 5e-95
Identities = 84/217 (38%), Positives = 116/217 (53%), Gaps = 6/217 (2%)
Query: 1 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEG-QVPSSDVVEVVVSPPFVFLGLVKSSL--- 56
M RK + GNWK N E +V + D V+V V PPF L V++ +
Sbjct: 1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGD 60
Query: 57 RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAY 116
+ AQ+ GA+TG++S L L +V++GHSERR NE + V K A
Sbjct: 61 KLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAAT 120
Query: 117 ALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTG 174
AL GL I C+GE L+ REAG+ + Q + + + ++V+AYEPVWAIGTG
Sbjct: 121 ALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTG 180
Query: 175 KVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
+VA+ A AQEV +RK L + SP IA R++YGG
Sbjct: 181 RVASAADAQEVCAAIRKELASLASPRIADTVRVLYGG 217
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom
initiative, RSGI, structural genomics; 1.60A {Thermus
thermophilus}
Length = 250
Score = 276 bits (709), Expect = 1e-94
Identities = 82/212 (38%), Positives = 108/212 (50%), Gaps = 5/212 (2%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP-GFH 61
R+ V GNWK + TP E + + L +P E V P F L + K L
Sbjct: 2 RRVLVAGNWKMHKTPSEARVWFAELKRL-LPPLQS-EAAVLPAFPILPVAKEVLAETQVG 59
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
AQ+ K GA+TGE+SA ML +L + I+GHSERR E + V +K L +G
Sbjct: 60 YGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEG 119
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATP 179
+ I CVGE LE RE G + Q + + V +V+AYEPVWAIGTGK ATP
Sbjct: 120 ITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATP 179
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
A+ +H +RK L A+ RI+YGG
Sbjct: 180 EDAEAMHQAIRKALSERYGEAFASRVRILYGG 211
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, TIM
barrel, TPIA; 2.35A {Burkholderia thailandensis}
Length = 272
Score = 275 bits (705), Expect = 1e-93
Identities = 85/212 (40%), Positives = 118/212 (55%), Gaps = 7/212 (3%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLR-PGFH 61
R V GNWK +G + +++ + +G D V + V PF +L ++ L+
Sbjct: 26 RIKRVIGNWKMHGRLSGNQALLTEVAQGAQAVHDNVAIGVCVPFPYLAQAQAQLQGGRVS 85
Query: 62 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQG 121
+Q+ + GA+TGE++A M+ + I+GHSERR E NE V K AL+ G
Sbjct: 86 WGSQDVSAHEQGAYTGEVAAGMVAEFGAAYAIVGHSERRAYHGESNETVAAKARRALAAG 145
Query: 122 LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATP 179
L I CVGETL +REAG+T VV AQ A+ +S + IV+AYEPVWAIGTGK AT
Sbjct: 146 LTPIVCVGETLAEREAGTTEQVVGAQLDAVLAVLSPDEAARIVVAYEPVWAIGTGKSATA 205
Query: 180 AQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
QAQ+VH LR L + + A ++YGG
Sbjct: 206 EQAQQVHAFLRGRL----AAKGAGHVSLLYGG 233
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics
center for infectious disease, S pathogenic fungus,
eukaryote; 2.20A {Coccidioides immitis RS}
Length = 310
Score = 265 bits (679), Expect = 2e-89
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 26/234 (11%)
Query: 3 RKFFVGGNWKCNGTPEE----VKKIVSVLNEGQVP-SSDVVEVVVSPPFVFLGLVKSSLR 57
K + + K TP ++ ++ N+ + + + + P F+ + +++
Sbjct: 35 PKTLLIISLKMYFTPSRTIDYIQGLLEPRNDIIRQENRSRLLLALIPDFLTIYPCSEAIK 94
Query: 58 P---------------GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLI 102
+ AQ+C+ G +TGEIS L ++ + V LGH+ERR I
Sbjct: 95 EFESNLAAPQDADTPPPLLLGAQDCFWDSLGPYTGEISPVCLRDMNVSIVELGHAERRAI 154
Query: 103 LNELNEFVGDKVAYALSQGLKVIACVGET-----LEQREAGSTMDVVAAQTKAIADRVSS 157
E ++ V K A A QGL + C+GE + G + AQ + + + +
Sbjct: 155 FGETDQQVARKAAAAADQGLIPLVCIGEVSTLGPIVSEAIGRAVGECEAQIRPVLEALPR 214
Query: 158 WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGG 211
+ ++ AYEPVWAIG + A V +R + RI+YGG
Sbjct: 215 DAPVIFAYEPVWAIGKPQPARVDHVGAVVSGIRSV-IERIDRHRKGEVRILYGG 267
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
{Thermoproteus tenax} SCOP: c.1.1.1
Length = 226
Score = 227 bits (582), Expect = 8e-76
Identities = 52/213 (24%), Positives = 76/213 (35%), Gaps = 31/213 (14%)
Query: 3 RKFFVGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHV 62
R + N+K G + + + V +VV+P + LGLV S+ V
Sbjct: 2 RLPILIINFKAYGEAAGKRAVELAKAAERAARELGVNIVVAPNHLELGLVSQSV--DIPV 59
Query: 63 AAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGL 122
AQ V+ GGA T +S E + VIL HSE L LN+L VA A S GL
Sbjct: 60 YAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLAR----LVAKAKSLGL 115
Query: 123 KVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQA 182
V+ C + A + +A EP IGTG+ + +
Sbjct: 116 DVVVCAPDPRTSLAAA------------------ALGPHAVAVEPPELIGTGRAVSRYKP 157
Query: 183 QEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
+ + + +I G I
Sbjct: 158 EAIVETVGL------VSRHFPEVSVITGA-GIE 183
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A
{Methanocaldococcus jannaschii}
Length = 219
Score = 211 bits (540), Expect = 1e-69
Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 7 VGGNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGFHVAAQN 66
+ N+K + + +V + + V+P FV L ++ ++ V AQ+
Sbjct: 3 IVINYKTYNESIGNRGLEIAKIAEKVSEESGITIGVAPQFVDLRMIVENV--NIPVYAQH 60
Query: 67 CWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIA 126
G+ TG I AE + + ++ HSE+R++L ++ + + GL+ I
Sbjct: 61 IDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEA----VINKCKNLGLETIV 116
Query: 127 CVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVH 186
C + ++ S +A EP IGTG + A + V
Sbjct: 117 CTNNINTSKAV------------------AALSPDCIAVEPPELIGTGIPVSKANPEVVE 158
Query: 187 FELRKWLLANTSPEIAAATRIIYGGISIN 215
+R EI +++ G I+
Sbjct: 159 GTVRAV------KEINKDVKVLCGA-GIS 180
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 205 bits (525), Expect = 3e-67
Identities = 41/215 (19%), Positives = 77/215 (35%), Gaps = 35/215 (16%)
Query: 3 RKFFVGGNWKCNGTP--EEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF 60
++ + N+K + +I + V V +VV+P V L ++ S+
Sbjct: 5 KEPIIAINFKTYIEATGKRALEIAKAAEK--VYKETGVTIVVAPQLVDLRMIAESV--EI 60
Query: 61 HVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQ 120
V AQ+ K G+ TG + E + +L HSE R+IL +L + A
Sbjct: 61 PVFAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEA----AIRRAEEV 116
Query: 121 GLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPA 180
GL + C ++ + +A EP IGTG + A
Sbjct: 117 GLMTMVCSNNPAVSAAV------------------AALNPDYVAVEPPELIGTGIPVSKA 158
Query: 181 QAQEVHFELRKWLLANTSPEIAAATRIIYGGISIN 215
+ + + + ++ +++ G I+
Sbjct: 159 KPEVITNTVEL------VKKVNPEVKVLCGA-GIS 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 1e-06
Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 53/210 (25%)
Query: 17 PEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVF--LGLVKSSL------------RPGFHV 62
+ K+ L E + P+ +V+ + LG K+ + + F +
Sbjct: 134 LQPYLKLRQALLELR-PAKNVL--------IDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 63 AAQNCWVKKGGAFTGEISAEMLVNL----EIPWVILGHSERRLILN------ELNEFVGD 112
W+ + E EML L + W + L EL +
Sbjct: 185 F----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 113 KVAYALSQGLKVIACV--GETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWA 170
K Y L V+ V + + ++ + K + D +S+ + ++ +
Sbjct: 241 KP-YE--NCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHH-- 294
Query: 171 IGTGKVATPAQAQEVHFELRKWLLANTSPE 200
TP + + + L K+L + P+
Sbjct: 295 ---SMTLTPDEVKSL---LLKYL--DCRPQ 316
Score = 31.7 bits (71), Expect = 0.21
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 44/124 (35%)
Query: 16 TPEEVKKIVS-VLN--EGQVPSSDVVEVVVSPPFVFLGLVKSSLRPGF-------HVAAQ 65
TP+EVK ++ L+ +P EV+ + P L ++ S+R G HV
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPR----EVLTTNPRR-LSIIAESIRDGLATWDNWKHV--- 350
Query: 66 NCWVKKGGAFTGEISAEML------------------VN-----LEIPWVILGHSERRLI 102
NC K E S +L + L + W + S+ ++
Sbjct: 351 NCD-KLTTII--ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 103 LNEL 106
+N+L
Sbjct: 408 VNKL 411
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.10
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 55/168 (32%)
Query: 42 VSPPFV----------FLGLVKSSLRP------GFHVAAQNCWVKKGGAFTGEISAEMLV 85
V L++++L G ++ W++ + + L+
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE---WLENPSNTPDK---DYLL 232
Query: 86 NLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTM---D 142
++ I ++G + +L Y ++ K++ L G+T
Sbjct: 233 SIPISCPLIG-------VIQL-------AHYVVT--AKLLGFTPGELRSYLKGATGHSQG 276
Query: 143 VVAAQTKAIADRVSSW----SNIVLAYEPVWAIGTGKVATPAQAQEVH 186
+V A A D SW ++ A ++ IG + E +
Sbjct: 277 LVTAVAIAETD---SWESFFVSVRKAITVLFFIG-------VRCYEAY 314
Score = 30.8 bits (69), Expect = 0.46
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 13 CNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPF 46
G + + +VLN ++ D++E+ S
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A
{Pseudomonas aeruginosa}
Length = 319
Score = 30.8 bits (70), Expect = 0.33
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 15 GTPE-------EVKKIVSVLNEGQVPSSDVVEVVVSPPF 46
GTPE + +I+ + D+VE VSPP+
Sbjct: 256 GTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVE--VSPPY 292
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.8 bits (66), Expect = 0.71
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 32 VPSSDVVEVVVSPPFVFLGL-----VKSSLRPGFHVAAQNCWVKKG---GAFTGEISAEM 83
V SD V P L + V V N + KG G + G+IS +
Sbjct: 51 VFVSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRCVNEVIPKGHIFGPYEGQISTQD 110
Query: 84 LVNLEIPWVILGHSERRLILNELNEFVGDKVAY 116
W+I+ + R ++ +E + + Y
Sbjct: 111 KSAGFFSWLIVDKNNRYKSIDGSDETKANWMRY 143
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis}
Length = 324
Score = 29.5 bits (67), Expect = 0.84
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 15 GTPE-------EVKKIVSVLNEGQVPSSDVVEVVVSPPF 46
GTP + IV L + +DVVE V+P +
Sbjct: 259 GTPVAGGLSSAQALAIVRGLGGVNLIGADVVE--VAPAY 295
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase,
antibioti; 1.75A {Streptomyces clavuligerus} SCOP:
c.42.1.1 PDB: 1gq7_A
Length = 313
Score = 29.4 bits (67), Expect = 0.88
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 15 GTPE-------EVKKIVSVLNEGQVPSSDVVEVVVSPPF 46
GTP EV ++ + + + DV+E VSP +
Sbjct: 248 GTPAPGGLLSREVLALLRCVGDLKPVGFDVME--VSPLY 284
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold,
transferase; 2.10A {Corynebacterium glutamicum}
Length = 360
Score = 29.4 bits (66), Expect = 0.91
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 14/111 (12%)
Query: 112 DKVAYALSQGLKVIACVGETLEQ--REAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVW 169
++A + G V V R A + + RVS + ++ +
Sbjct: 60 AQIAELKAAGASVDQAVYAMSIDDVRNACDLFTGIFESSNGYDGRVSIEVDPRISAD--- 116
Query: 170 AIGTGKVATPAQAQEVHFEL-RKWLL---ANTSPEIAAATRIIYGGISINV 216
+ AT AQA+E+ ++ R ++ T + A T + GIS+NV
Sbjct: 117 -----RDATLAQAKELWAKVDRPNVMIKIPATPGSLPAITDALAEGISVNV 162
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas
aeruginosa} PDB: 3nip_A
Length = 326
Score = 29.5 bits (67), Expect = 0.98
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 9/39 (23%)
Query: 15 GTPE-------EVKKIVSVLNEGQVPSSDVVEVVVSPPF 46
GTPE + +++V L + +DVVE VSPPF
Sbjct: 253 GTPEIGGMTSLQAQQLVRGLRGLDLVGADVVE--VSPPF 289
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente
structural genomics, JCSG, protein structure initiative,
PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Length = 352
Score = 29.0 bits (65), Expect = 1.2
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 177 ATPAQAQEVHFE-LRKWLL---ANTSPEIAAATRIIYGGISINV 216
T +A+ +H RK + T I A ++ GIS+N+
Sbjct: 119 GTVEEARRLHAAIARKNAMIKVPATDAGIDALETLVSDGISVNL 162
>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass,
transferase, tricarboxylic acid cycle; 1.04A
{Escherichia coli} PDB: 3cv1_A 3cv2_A*
Length = 532
Score = 29.0 bits (65), Expect = 1.6
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 9 GNWKCNGTPEEVKKIVSVLNEGQVPSSDVVEVVVSPPFVFLGLVKSSLRP 58
+WK G P ++ + V G V V+ + + VF+ + SL P
Sbjct: 75 ADWKIRGIPADL-EDRRVEITGPVERKMVINALNANVKVFMADFEDSLAP 123
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate
mutase, SH3 domain binding, structural genom TBSGC;
1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Length = 265
Score = 27.5 bits (62), Expect = 3.9
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 19/72 (26%)
Query: 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAG 138
+S + +V L IP G + Y L ++ + G L+ A
Sbjct: 197 MSDDEIVGLNIP-------------------TGIPLRYDLDSAMRPLVRGGTYLDPEAAA 237
Query: 139 STMDVVAAQTKA 150
+ VA Q +
Sbjct: 238 AGAAAVAGQGRG 249
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 27.1 bits (61), Expect = 4.6
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 19/72 (26%)
Query: 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAG 138
IS E ++N+ +P G + L + L+ + +Q
Sbjct: 202 ISDEDIINITLP-------------------TGVPILLELDENLRAVGPHQFLGDQEAIQ 242
Query: 139 STMDVVAAQTKA 150
+ + V Q K
Sbjct: 243 AAIKKVEDQGKV 254
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 27.2 bits (61), Expect = 5.9
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 18/88 (20%)
Query: 16 TPEEVKKIVSVLNEGQVPSSDVVEVVVSP------PF-VFLGLVKSSLRPGFHVAAQNCW 68
P +VK+ ++N V+ P V + + G + QNC
Sbjct: 138 DPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDI-IQNCE 196
Query: 69 V----KKGGAFT------GEISAEMLVN 86
V K G T G I A +
Sbjct: 197 VTGFIKDGEKVTGVKTTRGTIHAGKVAL 224
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 26.7 bits (60), Expect = 7.3
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 19/72 (26%)
Query: 79 ISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAG 138
+S E ++ L +P G + Y L + LK I + ++
Sbjct: 200 LSEEAIMELNLP-------------------TGIPIVYELDKNLKPIKPMQFLGDEETVR 240
Query: 139 STMDVVAAQTKA 150
M+ VAAQ KA
Sbjct: 241 KAMEAVAAQGKA 252
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,728,819
Number of extensions: 223290
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 47
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)