Query 026523
Match_columns 237
No_of_seqs 122 out of 1080
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10447 HflBKC-binding inner 100.0 1.1E-40 2.5E-45 283.7 24.8 191 34-237 12-218 (219)
2 KOG2322 N-methyl-D-aspartate r 100.0 3E-41 6.4E-46 284.7 17.5 186 32-220 37-237 (237)
3 cd06181 BI-1-like BAX inhibito 100.0 1.8E-37 3.9E-42 263.8 25.8 192 39-235 2-212 (212)
4 COG0670 Integral membrane prot 100.0 3.7E-35 8.1E-40 252.3 25.2 195 34-233 15-227 (233)
5 PF01027 Bax1-I: Inhibitor of 100.0 1.5E-31 3.2E-36 225.3 23.3 186 40-232 1-205 (205)
6 KOG1629 Bax-mediated apoptosis 100.0 9.7E-29 2.1E-33 202.8 18.8 190 33-236 18-224 (235)
7 KOG1630 Growth hormone-induced 99.9 3.4E-22 7.4E-27 169.9 13.5 196 36-236 108-333 (336)
8 PF12811 BaxI_1: Bax inhibitor 99.1 3.2E-07 6.9E-12 80.7 25.4 188 38-236 54-272 (274)
9 COG4760 Predicted membrane pro 98.3 0.00026 5.7E-09 59.6 19.0 117 118-235 143-273 (276)
10 KOG3488 Dolichol phosphate-man 75.1 22 0.00047 25.1 6.7 53 183-235 13-77 (81)
11 PRK10245 adrA diguanylate cycl 64.3 1.2E+02 0.0025 27.8 16.9 24 42-65 32-55 (366)
12 KOG3103 Rab GTPase interacting 57.3 54 0.0012 28.6 7.2 61 118-182 143-203 (249)
13 PF03209 PUCC: PUCC protein; 35.5 3.9E+02 0.0084 25.2 14.0 33 33-65 117-149 (403)
14 PF03491 5HT_transporter: Sero 33.4 26 0.00057 21.9 1.2 13 2-14 23-35 (42)
15 PF11674 DUF3270: Protein of u 33.2 1.7E+02 0.0037 21.6 5.7 8 83-90 72-79 (90)
16 KOG2533 Permease of the major 32.0 4.7E+02 0.01 25.2 13.7 26 36-61 32-57 (495)
17 PF11026 DUF2721: Protein of u 28.9 2.4E+02 0.0052 21.9 6.3 27 144-170 89-115 (130)
18 COG3201 PnuC Nicotinamide mono 28.7 3.8E+02 0.0083 23.1 12.2 62 80-141 26-92 (222)
19 PF10856 DUF2678: Protein of u 23.9 49 0.0011 25.6 1.5 40 16-60 8-47 (118)
20 PF12273 RCR: Chitin synthesis 23.9 46 0.001 25.8 1.4 10 79-88 2-11 (130)
21 PF06123 CreD: Inner membrane 22.8 6.7E+02 0.014 23.8 13.2 10 99-108 321-330 (430)
22 PF09925 DUF2157: Predicted me 21.9 3.9E+02 0.0084 20.8 11.9 32 41-72 30-61 (145)
23 PF13964 Kelch_6: Kelch motif 21.3 41 0.0009 21.0 0.6 24 3-27 19-43 (50)
No 1
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=283.74 Aligned_cols=191 Identities=21% Similarity=0.352 Sum_probs=164.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHccchhHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 026523 34 GENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDLLRGNSGLLLFLSILPFILLWPLHVYHQKHPVNLIVLGLFT 113 (237)
Q Consensus 34 ~~~~~r~~fl~kvY~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~l~~~~~~~p~~~~~l~~ft 113 (237)
++...+++|+||||++++.+++.+++++++....+. +.+..+..++++++.++...+ +|++|.|+.++..||
T Consensus 12 ~~~~~~~~~Lr~vY~lLa~tl~~aa~ga~v~~~~~~-------~~~~~~~~~~~~~gl~~~~~~-~~~~~~~~~llf~fT 83 (219)
T PRK10447 12 TSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLML-------PSPGLILTLVGMYGLMFLTYK-TANKPTGILSAFAFT 83 (219)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 334457889999999999999999999998874321 112223444566666665444 578999999999999
Q ss_pred HHhH----------------HHHHHHHHHHHHHHHHHHHhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHhhhcCchh
Q 026523 114 VSLS----------------RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGST 177 (237)
Q Consensus 114 ~~~~----------------~iV~~A~~~Ta~if~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~~ 177 (237)
.++| ++|.+|++.|+++|+++|++++ +||||++++|++|+++++++++++++++|++ ++.
T Consensus 84 ~~~G~~lg~i~~~y~~~~~~~iV~~A~~~Ta~iF~~ls~~a~---~tk~Dfs~lg~~L~~~l~~li~~~l~~~F~~-s~~ 159 (219)
T PRK10447 84 GFLGYILGPILNTYLSAGMGDVIALALGGTALVFFCCSAYVL---TTRKDMSFLGGMLMAGIVVVLIGMVANIFLQ-LPA 159 (219)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc-cHH
Confidence 8887 4689999999999999999997 8999999999999999999999999999997 678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026523 178 STAVYGGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLDILNLFISILRVLRSSDG 237 (237)
Q Consensus 178 ~~~i~~~~g~llf~~~l~yDTq~i~~~~~~~dyI~~Al~LYlDiinlFl~iL~il~~~~~ 237 (237)
.+.+++++|+++||+|++||||+|+++ ++|||+.||++||+|++|+|+++|||++++||
T Consensus 160 ~~~~~s~~g~llfsgyilyDTq~Ii~~-g~~dyi~aAl~LYlDiinlFl~lL~il~~~~~ 218 (219)
T PRK10447 160 LHLAISAVFILISSGAILFETSNIIHG-GETNYIRATVSLYVSLYNIFVSLLSILGFASR 218 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 899999999999999999999999976 68999999999999999999999999997653
No 2
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=100.00 E-value=3e-41 Score=284.67 Aligned_cols=186 Identities=42% Similarity=0.787 Sum_probs=175.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHccchhHHHHHHHHHHHHHHHHhh---hcccchhHHHH
Q 026523 32 SYGENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDLLRGNSGLLLFLSILPFILLWPLHV---YHQKHPVNLIV 108 (237)
Q Consensus 32 ~~~~~~~r~~fl~kvY~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~l~~---~~~~~p~~~~~ 108 (237)
++.|+++|+.|+||||++++.|+++|..++......++.++|+.+|+|++|.+.+..++..+.+.| .|||+|.|+++
T Consensus 37 ~~~~~~iR~~FiRKVYsIl~~QLl~T~~~~~~~~~~~~~~~~v~~~~~~~~~~~~vf~vt~l~l~c~~~~r~k~P~N~il 116 (237)
T KOG2322|consen 37 AFCDQSIRWGFIRKVYSILSIQLLITLAVVAIFTVHEPVQDFVRRNPALYWALIVVFIVTYLSLACCEGLRRKSPVNLIL 116 (237)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHheeEEEEccHHHHHHHhCcHHHHHHHHHHHHHHHHHHccCcccccCcHHHhH
Confidence 689999999999999999999999999999999999999999999999999999999988888887 47899999999
Q ss_pred HHHHHHHhH------------HHHHHHHHHHHHHHHHHHHhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHhhhcCch
Q 026523 109 LGLFTVSLS------------RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGS 176 (237)
Q Consensus 109 l~~ft~~~~------------~iV~~A~~~Ta~if~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~ 176 (237)
+..||++++ .+|++|+++|+++++++++|++ ++|+||+..++.++..++++++++++..+++.++
T Consensus 117 L~iFT~a~s~~~g~~~a~~~~~~VL~Al~IT~~V~~slt~~t~---qtK~DFt~~~~~l~~~l~vl~~~g~I~~~f~~~~ 193 (237)
T KOG2322|consen 117 LGIFTLAEAFMTGLVTAFYDAKVVLLALIITTVVVLSLTLFTL---QTKYDFTSLGGFLFALLIVLLLFGLIFLFFPYGP 193 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhheeeEEEEEE---eeccchhhhhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999988 8999999999999999999988 8899999999999999999999996666565578
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHH
Q 026523 177 TSTAVYGGISALVFCGYIVYDTDNLIKRFTYDDYILASVTLYLD 220 (237)
Q Consensus 177 ~~~~i~~~~g~llf~~~l~yDTq~i~~~~~~~dyI~~Al~LYlD 220 (237)
+.+.+++++|+++|++|++||||+++++.+|||||.||+++|+|
T Consensus 194 ~~~~vya~lgAllf~~yl~~Dtqllm~~~SPEEYI~aA~~lYlD 237 (237)
T KOG2322|consen 194 ILVMVYAALGALLFCGYLVYDTQLLMGRISPEEYIFAALNLYLD 237 (237)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHhccCCHHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999998
No 3
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=100.00 E-value=1.8e-37 Score=263.81 Aligned_cols=192 Identities=40% Similarity=0.684 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHccchhHHHHHHHHHHHHHHHHhh---hcccchhHHHHHHHHHHH
Q 026523 39 RWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDLLRGNSGLLLFLSILPFILLWPLHV---YHQKHPVNLIVLGLFTVS 115 (237)
Q Consensus 39 r~~fl~kvY~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~l~~---~~~~~p~~~~~l~~ft~~ 115 (237)
|++|+||||+++++|+++|+++++.....++.++ ...++|..|++.+++++..+.+.+ .+||+|.|++++.+||++
T Consensus 2 ~~~fl~kVY~~l~~~l~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~ll~~ft~~ 80 (212)
T cd06181 2 RRGFLRKVYGLLALQLLVTALVAYLGMFSPPLRN-VLSNTPLGWLLLLAFLGLVILLFCCRIKRRSSPANLILLFLFTAL 80 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999888766 455667667766666655554444 467899999999999999
Q ss_pred hH------------HHHHHHHHHHHHHHHHHHHhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHhhhcCchhhHHHHH
Q 026523 116 LS------------RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGSTSTAVYG 183 (237)
Q Consensus 116 ~~------------~iV~~A~~~Ta~if~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~~~~~i~~ 183 (237)
+| ..+.+|+..|+++|++++++++ ++|||++++|+++++++.++++.+++++|++ ++..+.+++
T Consensus 81 ~g~~l~~~~~~~~~~~i~~A~~~T~~if~~l~l~a~---~tk~d~~~~g~~l~~~~~~l~~~~l~~~f~~-~~~~~~~~~ 156 (212)
T cd06181 81 MGVTLGPILSVYTAASVLQAFGITAAVFGGLSLYAL---TTKRDFSFLGGFLFMGLIVLIVASLVNIFLQ-SPALQLAIS 156 (212)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hccccHHhHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHH
Confidence 88 6789999999999999999988 7899999999999999999999999999987 677889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026523 184 GISALVFCGYIVYDTDNLIKRF----TYDDYILASVTLYLDILNLFISILRVLRSS 235 (237)
Q Consensus 184 ~~g~llf~~~l~yDTq~i~~~~----~~~dyI~~Al~LYlDiinlFl~iL~il~~~ 235 (237)
++|+++|++|++||||+++++. ++|||+.||++||+|++|+|+++||+++++
T Consensus 157 ~~g~~lf~~~l~~Dtq~i~~~~~~~~~~~d~i~~al~LylDiinlF~~iL~il~~~ 212 (212)
T cd06181 157 ALGVLLFSGYILYDTQLIIGGYRLYLSPDDYILAALSLYLDIINLFLSLLRILGSR 212 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999764 489999999999999999999999999875
No 4
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=252.33 Aligned_cols=195 Identities=28% Similarity=0.399 Sum_probs=170.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHccchhHHHHHHHHHHHHHHHHhhhc-ccchhHHHHHHHH
Q 026523 34 GENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDLLRGNSGLLLFLSILPFILLWPLHVYH-QKHPVNLIVLGLF 112 (237)
Q Consensus 34 ~~~~~r~~fl~kvY~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~l~~~~-~~~p~~~~~l~~f 112 (237)
+++..+++|++|||.++++++++|+++++...+.++..+.. .++++.++.+++.+..++.+..+. ++.|.+...+..|
T Consensus 15 ~~~~~~~~f~~~vY~~~~~~L~~t~~~a~~~~~~~~~~~~~-~~~~~~~vl~~a~l~~~~~~~~~~~~s~~~~~~~~~~~ 93 (233)
T COG0670 15 KSDLGLNTFLRKVYLLLALGLLVTAVGAALAAYLLFNLGLL-SLSPPGFVLIIAGLAGVFFLSRKINKSSPTALILFFVY 93 (233)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 33567789999999999999999999998876655443321 455667778888888877776643 5788899999988
Q ss_pred HHHhH----------------HHHHHHHHHHHHHHHHHHHhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHhhhcCch
Q 026523 113 TVSLS----------------RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGS 176 (237)
Q Consensus 113 t~~~~----------------~iV~~A~~~Ta~if~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~ 176 (237)
+..+| .+|.+|+..|+++|+++++|++ ++|||++.+++.++++++++++++++|+|.+ ++
T Consensus 94 t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~g~---~tk~Dls~l~~~l~~aligLiiasvvn~Fl~-s~ 169 (233)
T COG0670 94 TALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGY---TTKRDLSSLGSFLFMALIGLIIASLVNIFLG-SS 169 (233)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc-Cc
Confidence 88887 4599999999999999999999 8999999999999999999999999999998 56
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026523 177 TSTAVYGGISALVFCGYIVYDTDNLIKR-FTYDDYILASVTLYLDILNLFISILRVLR 233 (237)
Q Consensus 177 ~~~~i~~~~g~llf~~~l~yDTq~i~~~-~~~~dyI~~Al~LYlDiinlFl~iL~il~ 233 (237)
..+.++|++|+++|+++++||||+|+|+ .++++++.+|++||+|++|+|+++||+++
T Consensus 170 ~l~~~IS~lgvlifsgli~yDtq~I~~~~~~~~~~i~~AlsLYldfiNlF~~LL~i~g 227 (233)
T COG0670 170 ALHLAISVLGVLIFSGLIAYDTQNIKRMEGGERLAIMGALSLYLDFINLFLSLLRILG 227 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999984 57899999999999999999999999998
No 5
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=100.00 E-value=1.5e-31 Score=225.32 Aligned_cols=186 Identities=40% Similarity=0.624 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHccchhHHHHHHHHHHHHHHHHh---hhcccchhH--HHHHHHHHH
Q 026523 40 WGFIRKVYGILTAQIVLTTLVSSITVLYNPINDLLRGNSGLLLFLSILPFILLWPLH---VYHQKHPVN--LIVLGLFTV 114 (237)
Q Consensus 40 ~~fl~kvY~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~l~---~~~~~~p~~--~~~l~~ft~ 114 (237)
|+|+||||++++.|+.+|+++++.....| .+...++|..|.+.+++++..+... .++||+|.+ +..+..||+
T Consensus 1 ~~fl~kvy~~l~~~l~it~~~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~ 77 (205)
T PF01027_consen 1 RQFLRKVYGLLALQLAITALGAFLVLASP---LFLSQHFPLSWVSLIVSLVLLIFLYILFNRRRRFPSNVALILLFIFTL 77 (205)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 37999999999999999988887776655 3444556777777776666553322 234455665 888888988
Q ss_pred HhH------------HHHHHHHHHHHHHHHHHHHhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHhhhcCchhhHHHH
Q 026523 115 SLS------------RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGSTSTAVY 182 (237)
Q Consensus 115 ~~~------------~iV~~A~~~Ta~if~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~~~~~i~ 182 (237)
.+| +++.+|+..|+++|++++++++ ++|+|++++++++++++.++++++++++|++ ++..+.++
T Consensus 78 ~~g~~~~~i~~~~~~~~v~~a~~~T~~if~~l~~~a~---~~~~d~~~~~~~l~~~l~~l~i~~l~~~f~~-~~~~~~~i 153 (205)
T PF01027_consen 78 LEGLLLGPISSFYDPSIVLQAFLLTAAIFIALTLYAF---FTKRDFTRWGGILFIGLIGLIIFGLVSIFLP-SSPLYLLI 153 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhcccchHHHHHHHHHHHHHHHHHHhc-chHHHHHH
Confidence 887 8889999999999999999988 7899999999999999999999999999887 56677788
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-cCCchhH-HHHHHHHHHHHHHHHHHHHHHH
Q 026523 183 GGISALVFCGYIVYDTDNLIK-RFTYDDY-ILASVTLYLDILNLFISILRVL 232 (237)
Q Consensus 183 ~~~g~llf~~~l~yDTq~i~~-~~~~~dy-I~~Al~LYlDiinlFl~iL~il 232 (237)
+++|+++|+++++||||+++| +.++||| +.+|++||+|++|+|+++||+|
T Consensus 154 s~~~~~lf~~~l~~Dt~~i~~~~~~~~~~~i~~Al~Ly~d~i~lF~~iL~ll 205 (205)
T PF01027_consen 154 SYIGILLFSLYLVYDTQRIIRRYFSPDDYAIIAALSLYLDIINLFLRILRLL 205 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999987 3467887 9999999999999999999986
No 6
>KOG1629 consensus Bax-mediated apoptosis inhibitor TEGT/BI-1 [Defense mechanisms]
Probab=99.96 E-value=9.7e-29 Score=202.79 Aligned_cols=190 Identities=23% Similarity=0.332 Sum_probs=163.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHccchhHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Q 026523 33 YGENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDLLRGNSGLLLFLSILPFILLWPLHVYHQKHPVNLIVLGLF 112 (237)
Q Consensus 33 ~~~~~~r~~fl~kvY~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~l~~~~~~~p~~~~~l~~f 112 (237)
.-+|.+| +|++|||..++..+.+++.++++.+... ..-.++.+++++.++++.|...++..++.++.+|
T Consensus 18 ~~sP~vq-~HLkkvY~tl~~~~~asA~GAylhM~~n----------igG~lsalg~l~~miwl~~~py~hk~rl~lL~~f 86 (235)
T KOG1629|consen 18 HISPAVQ-NHLKKVYLTLALALFASAAGAYLHMVWN----------IGGLLSALGSLGLMIWLMFTPYEHKTRLGLLFLF 86 (235)
T ss_pred cCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHhhhh----------ccchHHHHHHHHHHHHHhCCCCccchhHHHHHHH
Confidence 3556666 7999999999999999999998876532 1124466777888888888777777789999999
Q ss_pred HHHhH---------------HHHHHHHHHHHHHHHHHHHhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHhhhcCchh
Q 026523 113 TVSLS---------------RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGST 177 (237)
Q Consensus 113 t~~~~---------------~iV~~A~~~Ta~if~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~~ 177 (237)
+++.| +++.+|+.+|+++|.|+|+.+..| ++|++.++|+.|..++..+...++.+.|++ |.+
T Consensus 87 a~l~GasvGP~i~~~ididpsIliTAf~GTav~F~cfSasAmlA--rrreYLylGg~L~s~~s~l~wl~l~n~~fg-S~~ 163 (235)
T KOG1629|consen 87 AFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSASAMLA--RRREYLYLGGLLSSGLSLLLWLSLANSFFG-SIW 163 (235)
T ss_pred HHHcCCcccchhhheeccChHHHHHHHHhhHHHHHHHHHHHHHH--hhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-HHH
Confidence 99987 888999999999999999999987 456799999999999999999999999997 555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 026523 178 STAVYGGISALVFCGYIVYDTDNLIKRF--TYDDYILASVTLYLDILNLFISILRVLRSSD 236 (237)
Q Consensus 178 ~~~i~~~~g~llf~~~l~yDTq~i~~~~--~~~dyI~~Al~LYlDiinlFl~iL~il~~~~ 236 (237)
....-.++|+++|++|+++|||.|+||. ++.||+.||+.+|.|++.+|.+||.|+..++
T Consensus 164 v~~~qLY~Gllvfvg~ivvdTQ~IiEKah~GdmDyv~Hsl~lf~dfvsvF~riLiIl~~~~ 224 (235)
T KOG1629|consen 164 VFKFQLYVGLLVFVGFIVVDTQEIIEKAHHGDMDYVQHSLDLFTDFVSVFRRILIILAMNE 224 (235)
T ss_pred HHHHHHHHHHHHhheeEEeeHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5556678999999999999999999863 7899999999999999999999999987643
No 7
>KOG1630 consensus Growth hormone-induced protein and related proteins [Signal transduction mechanisms]
Probab=99.88 E-value=3.4e-22 Score=169.94 Aligned_cols=196 Identities=21% Similarity=0.308 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHccchhHHHHHHHHHHHHHHHHhhhcc----------cchhH
Q 026523 36 NQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDLLRGNSGLLLFLSILPFILLWPLHVYHQ----------KHPVN 105 (237)
Q Consensus 36 ~~~r~~fl~kvY~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~l~~~~~----------~~p~~ 105 (237)
|+-.++.++.+|.+++.++.+|+..+.....++.+.+++.+..|+..+ +++..++..-...| ||-.+
T Consensus 108 PqyVrdRI~sTYay~~gS~~lTA~savA~~rs~~lm~l~~rgg~va~~---~tla~mi~sG~larsi~Yq~g~gaKhLAW 184 (336)
T KOG1630|consen 108 PQYVRDRIHSTYAYLAGSCGLTAASAVAISRSPALMNLMMRGGWVAIG---VTLAAMIGSGMLARSIEYQPGPGAKHLAW 184 (336)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHhccHHHHHHHhcCchHHHH---HHHHHHHhcchhhhcccCCCCccHHHHHH
Confidence 344457999999999999999999888888888888888887765444 44443333211111 22233
Q ss_pred HHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHhhhcCch--
Q 026523 106 LIVLGLFTVSL-------SRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGS-- 176 (237)
Q Consensus 106 ~~~l~~ft~~~-------~~iV~~A~~~Ta~if~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~-- 176 (237)
...-.+.+... |++...|...|++|++++|..+..|... .|..++++|-+|+-++++.++.++|.+.+.
T Consensus 185 ~lHc~vlGAV~APlc~lgGPiLtrAa~YTaGIVGgLStvA~cAPSe--KFL~MggPLaiGlGvVFvssl~sm~LPPtta~ 262 (336)
T KOG1630|consen 185 LLHCGVLGAVVAPLCFLGGPILTRAAWYTAGIVGGLSTVAACAPSE--KFLNMGGPLAIGLGVVFVSSLGSMFLPPTTAL 262 (336)
T ss_pred HHHHHHHHHHHhhHHhcccHHHHHHHHHHccccchhhhhhhcCcHH--HHhhcCCCceeeeeeEehhhhhhhhcCCchhh
Confidence 33333333322 2999999999999999999998766544 599999999999999999999999987432
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHhhhc---C------CchhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 026523 177 --TSTAVYGGISALVFCGYIVYDTDNLIKR---F------TYDDYILASVTLYLDILNLFISILRVLRSSD 236 (237)
Q Consensus 177 --~~~~i~~~~g~llf~~~l~yDTq~i~~~---~------~~~dyI~~Al~LYlDiinlFl~iL~il~~~~ 236 (237)
.+..+..+.|+++|++|++||||++.++ + ..-|+|.+++++|+|+.|+|+||..|+++.+
T Consensus 263 GA~LaSmslYGGLiLFS~FLLYDTQr~vk~ae~ypq~s~~~~~dPin~~msiymdvlnifiriv~il~ggq 333 (336)
T KOG1630|consen 263 GAGLASMSLYGGLILFSGFLLYDTQRVVKSAEKYPQYSEFPNYDPINACMSIYMDVLNIFIRIVMILGGGQ 333 (336)
T ss_pred hhhhHHHHHhccHHHHHHHHHHhHHHHHHHHHhCcchhccCCCCchHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 2345556789999999999999999863 2 1268999999999999999999999999754
No 8
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=99.05 E-value=3.2e-07 Score=80.73 Aligned_cols=188 Identities=17% Similarity=0.154 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHccchhHHHHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHHh
Q 026523 38 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDLLRGNSGLLLFLSILPFILLWPLHVYHQK-HPVNLIVLGLFTVSL 116 (237)
Q Consensus 38 ~r~~fl~kvY~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~l~~~~~~-~p~~~~~l~~ft~~~ 116 (237)
.....+.|+-..+++ +.+++...+......+ +. ...+.+++.++.+++.+...++++. +|.- -..|++.|
T Consensus 54 T~~~vv~KT~~ll~l-l~~~a~~~~~~~~~~~--~~---~~~~~~~g~i~glvl~lv~~F~~~~~sp~l---~~~YA~~E 124 (274)
T PF12811_consen 54 TVDGVVNKTGILLGL-LVVTAAVSWFLIPSNP--GL---AMPLAIVGAIGGLVLALVISFKRKVWSPAL---APIYAVLE 124 (274)
T ss_pred ccccHHHHHHHHHHH-HHHHHHHHHHHHhcch--HH---HHHHHHHHHHHHHHHHHHHHhCCccCChHH---HHHHHHHH
Confidence 334567777555543 3334444433221100 00 1122344555556655555555544 5542 22344443
Q ss_pred H-------------------HHHHHHHHHHHHHHHHHHHhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHhhh-----
Q 026523 117 S-------------------RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFF----- 172 (237)
Q Consensus 117 ~-------------------~iV~~A~~~Ta~if~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~liv~~l~~~f~----- 172 (237)
| +++.+|.+.|.++|++|.+. +.. ..-|--.+..++...+...+.+..++++..
T Consensus 125 G~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~l-Yk~-g~IrvT~kf~~iv~~a~~gi~~~~Lv~~vl~lf~~ 202 (274)
T PF12811_consen 125 GVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLAL-YKT-GIIRVTPKFRRIVMIATFGIALFYLVNLVLSLFVG 202 (274)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH-HHh-CCeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 68899999999999987763 311 111223356666666666656555555432
Q ss_pred --cCchhhHHHHHHHHHHHHHHHHHHHHHHhhh---cCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 026523 173 --PLGSTSTAVYGGISALVFCGYIVYDTDNLIK---RFTY-DDYILASVTLYLDILNLFISILRVLRSSD 236 (237)
Q Consensus 173 --~~~~~~~~i~~~~g~llf~~~l~yDTq~i~~---~~~~-~dyI~~Al~LYlDiinlFl~iL~il~~~~ 236 (237)
+.+..+-+.++.+++.+=+..++-|...|-+ +.-| +....+|+.|=+.+|.++++|||+|+.-+
T Consensus 203 ~l~~~gplgI~~slv~v~iAa~sLllDFd~Ie~~v~~gaPk~~eW~~AfGL~vTLVWLYlEILRLL~~l~ 272 (274)
T PF12811_consen 203 SLRDGGPLGIGFSLVVVGIAALSLLLDFDFIEQGVRQGAPKKMEWYAAFGLLVTLVWLYLEILRLLSKLQ 272 (274)
T ss_pred hcccCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1123456777777777777778888877643 2334 44688999999999999999999998643
No 9
>COG4760 Predicted membrane protein [Function unknown]
Probab=98.27 E-value=0.00026 Score=59.65 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh--hccCCCchhhhHHHHHHHHHHHHHHHHH-hhhcC-ch------hhHHHH--HHH
Q 026523 118 RIVLEALILTSAVVCSLTGYTFWA--SKKGKDFSFLGPILFTSLIILILTSFMQ-MFFPL-GS------TSTAVY--GGI 185 (237)
Q Consensus 118 ~iV~~A~~~Ta~if~~lsl~a~~a--~~tk~d~~~~g~~L~~~l~~liv~~l~~-~f~~~-~~------~~~~i~--~~~ 185 (237)
..|.+|.+.|.++|.+|-.. +.+ -+...+|+.+--....|..++++..++. +|.+. ++ .+-+++ -++
T Consensus 143 gligqAvLgT~Gvf~gML~v-YktGaIkvTpkF~r~v~a~~~Gvl~L~Lgn~vla~F~Gg~~pllr~gG~~~IiFSLfci 221 (276)
T COG4760 143 GLIGQAVLGTFGVFFGMLVV-YKTGAIKVTPKFTRMVVAATFGVLVLMLGNFVLAMFVGGGIPLLRSGGPFGIIFSLFCI 221 (276)
T ss_pred ceeHHHHHHHHHHHHHHHHH-HhcCceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCceEeeHHHHHH
Confidence 88899999999999998764 311 1111245554333333444444444433 33221 11 122232 356
Q ss_pred HHHHHHHHHHHHH-HHhhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 026523 186 SALVFCGYIVYDT-DNLIKRF-TYDDYILASVTLYLDILNLFISILRVLRSS 235 (237)
Q Consensus 186 g~llf~~~l~yDT-q~i~~~~-~~~dyI~~Al~LYlDiinlFl~iL~il~~~ 235 (237)
|+..|+..+-||. .+++++. .++.....|+.|-+..+.+++.+||+|+.-
T Consensus 222 giAAf~fllDFDaad~~vr~GAP~kmaWgvAlGL~VTLVWLY~EiLRLLSy~ 273 (276)
T COG4760 222 GIAAFSFLLDFDAADQMVRAGAPEKMAWGVALGLTVTLVWLYLEILRLLSYL 273 (276)
T ss_pred HHHHHHHHhhhhHHHHHHHcCChhhhHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 7789999999998 3334443 345578899999999999999999999863
No 10
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=75.08 E-value=22 Score=25.08 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHH-------HHHHhhhcC-CchhH----HHHHHHHHHHHHHHHHHHHHHHhcC
Q 026523 183 GGISALVFCGYIVY-------DTDNLIKRF-TYDDY----ILASVTLYLDILNLFISILRVLRSS 235 (237)
Q Consensus 183 ~~~g~llf~~~l~y-------DTq~i~~~~-~~~dy----I~~Al~LYlDiinlFl~iL~il~~~ 235 (237)
.++...+|.-|++| |.|.+++++ -|+|| ..+|.-.-+.++..|+.++.+=+++
T Consensus 13 v~iSl~iFtYYT~WViilPFvDs~hiihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vMlKskk 77 (81)
T KOG3488|consen 13 VYISLAIFTYYTIWVIILPFVDSMHIIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVMLKSKK 77 (81)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34445555555544 888888874 67887 3455556678999999988775543
No 11
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=64.31 E-value=1.2e+02 Score=27.81 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026523 42 FIRKVYGILTAQIVLTTLVSSITV 65 (237)
Q Consensus 42 fl~kvY~~l~~~l~it~~~~~~~~ 65 (237)
|.||+|.-=.+|+...+..+....
T Consensus 32 ~~~r~~~~r~~g~~~~~~~~~~~~ 55 (366)
T PRK10245 32 FARRVRLPRAVGLAGMFLPIASTL 55 (366)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999887777777666555443
No 12
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.33 E-value=54 Score=28.56 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCCchhhhHHHHHHHHHHHHHHHHHhhhcCchhhHHHH
Q 026523 118 RIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPILFTSLIILILTSFMQMFFPLGSTSTAVY 182 (237)
Q Consensus 118 ~iV~~A~~~Ta~if~~lsl~a~~a~~tk~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~~~~~i~ 182 (237)
.|...+...|..++..+.+.+ ++.-.|....+.+--+++=+.+.+.++++++.......++
T Consensus 143 yIygi~~~gsl~iy~L~nlm~----~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il 203 (249)
T KOG3103|consen 143 YIYGISLLGSLSIYFLLNLMS----NKNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYIL 203 (249)
T ss_pred EEeeeHHHHHHHHHHHHHHHh----hcCcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 444566667777777777654 3445566677777777777888888888876443333333
No 13
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=35.54 E-value=3.9e+02 Score=25.23 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=27.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026523 33 YGENQLRWGFIRKVYGILTAQIVLTTLVSSITV 65 (237)
Q Consensus 33 ~~~~~~r~~fl~kvY~~l~~~l~it~~~~~~~~ 65 (237)
-.+|+.|.+.+.=+|..+..+.+++++......
T Consensus 117 ~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 117 LAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred cCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567888999999999999999999988765443
No 14
>PF03491 5HT_transporter: Serotonin (5-HT) neurotransmitter transporter, N-terminus; InterPro: IPR013086 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters []. The serotonin (5-HT) neurotransmitter transporter is known to be expressed in the brain and also in the periphery: on platelet, placental and pulmonary cell membranes. The brain 5-HT transporter is thought to be the principal site of action of therapeutic anti-depressants (which inhibit this transporter), and it may also mediate the behavioural effects of cocaine and amphetamines []. The human form (630 amino acids) is 92% identical to the rat brain 5-HT transporter, and shares the same predicted topology and conserved sites for post-translational modification. This domain is found at the N-terminal region of some 5-HT neurotransmitters.; GO: 0005335 serotonin:sodium symporter activity, 0006836 neurotransmitter transport, 0005887 integral to plasma membrane
Probab=33.36 E-value=26 Score=21.88 Aligned_cols=13 Identities=38% Similarity=0.593 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCC
Q 026523 2 LGYEGVRSKDDGK 14 (237)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (237)
|||+++|+++-++
T Consensus 23 NGYSaVps~gagd 35 (42)
T PF03491_consen 23 NGYSAVPSPGAGD 35 (42)
T ss_pred cCcccccCCCCCc
Confidence 8999999987766
No 15
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=33.16 E-value=1.7e+02 Score=21.56 Aligned_cols=8 Identities=0% Similarity=0.260 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 026523 83 FLSILPFI 90 (237)
Q Consensus 83 ~~~i~~~~ 90 (237)
.+++.+++
T Consensus 72 ~Ai~~Sl~ 79 (90)
T PF11674_consen 72 LAILISLA 79 (90)
T ss_pred HHHHHHHH
Confidence 34444443
No 16
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=32.04 E-value=4.7e+02 Score=25.18 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026523 36 NQLRWGFIRKVYGILTAQIVLTTLVS 61 (237)
Q Consensus 36 ~~~r~~fl~kvY~~l~~~l~it~~~~ 61 (237)
++.+++..+|+.-.+.-=+.++....
T Consensus 32 ~~~~~~l~~K~dl~i~~~~~~~y~~~ 57 (495)
T KOG2533|consen 32 PKEERKLLRKLDLFILPFLCYLYFHA 57 (495)
T ss_pred chHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788888877766555554443
No 17
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=28.89 E-value=2.4e+02 Score=21.87 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=19.2
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHHHh
Q 026523 144 KGKDFSFLGPILFTSLIILILTSFMQM 170 (237)
Q Consensus 144 tk~d~~~~g~~L~~~l~~liv~~l~~~ 170 (237)
.+.|+..+...+|++....++.+++..
T Consensus 89 ~~~~~~~~~~~lF~~am~~l~~sl~~f 115 (130)
T PF11026_consen 89 LSIDLSWLVAILFVLAMLLLIASLVLF 115 (130)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888888877777777766643
No 18
>COG3201 PnuC Nicotinamide mononucleotide transporter [Coenzyme metabolism]
Probab=28.72 E-value=3.8e+02 Score=23.11 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhH----HHHHHHHHHHHHHHHH-HHHhhhhh
Q 026523 80 LLLFLSILPFILLWPLHVYHQKHPVNLIVLGLFTVSLS----RIVLEALILTSAVVCS-LTGYTFWA 141 (237)
Q Consensus 80 l~~~~~i~~~~~~~~l~~~~~~~p~~~~~l~~ft~~~~----~iV~~A~~~Ta~if~~-lsl~a~~a 141 (237)
..|+.+++++...+......+++|.|+.+=..+...-. ..-..|-..|-..|.. +++|++++
T Consensus 26 ~swi~lIa~l~G~lcv~f~s~~k~~n~~fGLI~~~lY~yi~~q~~~ya~~ll~L~~~~p~~iyG~f~ 92 (222)
T COG3201 26 LSWIELIATLSGLLCVVFASKGKPINYFFGLINVALYAYIFFQIKLYAEVLLQLFFYAPAQIYGWFA 92 (222)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHheechhHHHHHH
Confidence 34556666665555555566778888776666655544 3344455555555655 88888877
No 19
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=23.92 E-value=49 Score=25.62 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=21.7
Q ss_pred ccCccCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026523 16 EVDLEGGDGERLYPGLSYGENQLRWGFIRKVYGILTAQIVLTTLV 60 (237)
Q Consensus 16 ~~~~e~~~~~~~~~~~~~~~~~~r~~fl~kvY~~l~~~l~it~~~ 60 (237)
.|.-++-+++++|.| ...|.+.+..+++.++.-+...++.
T Consensus 8 ~~g~~g~~~rPLFGE-----~~~r~riinliiG~vT~l~VLvtii 47 (118)
T PF10856_consen 8 TYGTSGKDNRPLFGE-----TSARDRIINLIIGAVTSLFVLVTII 47 (118)
T ss_pred ccCCCCcCCCcccCC-----CCcccEEEEeehHHHHHHHHHHHHh
Confidence 344454555555555 3334446777777776655544443
No 20
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.90 E-value=46 Score=25.78 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=4.1
Q ss_pred hHHHHHHHHH
Q 026523 79 GLLLFLSILP 88 (237)
Q Consensus 79 ~l~~~~~i~~ 88 (237)
|++|+.+++.
T Consensus 2 W~l~~iii~~ 11 (130)
T PF12273_consen 2 WVLFAIIIVA 11 (130)
T ss_pred eeeHHHHHHH
Confidence 4444443333
No 21
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=22.80 E-value=6.7e+02 Score=23.84 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=5.3
Q ss_pred cccchhHHHH
Q 026523 99 HQKHPVNLIV 108 (237)
Q Consensus 99 ~~~~p~~~~~ 108 (237)
.|-||..|.+
T Consensus 321 ~~iHpiQY~L 330 (430)
T PF06123_consen 321 LRIHPIQYLL 330 (430)
T ss_pred CcccHHHHHH
Confidence 3446666543
No 22
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=21.93 E-value=3.9e+02 Score=20.82 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 026523 41 GFIRKVYGILTAQIVLTTLVSSITVLYNPIND 72 (237)
Q Consensus 41 ~fl~kvY~~l~~~l~it~~~~~~~~~~~~~~~ 72 (237)
++..++..+++.-++..++...+..+.+.+.+
T Consensus 30 ~~~~~~l~~lGall~~~gii~fvA~nW~~i~~ 61 (145)
T PF09925_consen 30 SWLARILLYLGALLLGLGIILFVAANWDDIPR 61 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 37888999999988888888888777655433
No 23
>PF13964 Kelch_6: Kelch motif
Probab=21.25 E-value=41 Score=20.95 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=15.2
Q ss_pred CCCC-CCCCCCCCCccCccCCCCCCC
Q 026523 3 GYEG-VRSKDDGKFEVDLEGGDGERL 27 (237)
Q Consensus 3 ~~~~-~~~~~~~~~~~~~e~~~~~~~ 27 (237)
|+.+ .+..++-. -||+|++.|+++
T Consensus 19 G~~~~~~~~~~v~-~yd~~t~~W~~~ 43 (50)
T PF13964_consen 19 GYDNSGKYSNDVE-RYDPETNTWEQL 43 (50)
T ss_pred CCCCCCCccccEE-EEcCCCCcEEEC
Confidence 4444 33344444 789999998653
Done!