Query 026523
Match_columns 237
No_of_seqs 122 out of 1080
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 15:36:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pfi_A Major coat protein of P 16.2 1E+02 0.0034 18.6 2.3 26 144-169 15-40 (46)
2 1q90_R Cytochrome B6-F complex 12.1 2.8E+02 0.0097 17.0 3.8 12 37-48 9-20 (49)
3 2q79_A Regulatory protein E2; 10.5 92 0.0032 22.1 1.1 16 31-46 51-66 (93)
4 4iao_C Regulatory protein SIR4 10.4 97 0.0033 23.9 1.3 17 7-23 56-72 (159)
5 1f9f_A Regulatory protein E2; 10.1 94 0.0032 21.5 1.0 16 31-46 53-68 (83)
6 2v50_A Multidrug resistance pr 10.1 1.2E+03 0.041 23.0 10.6 26 40-65 334-359 (1052)
7 4dx5_A Acriflavine resistance 9.6 1.2E+03 0.042 22.9 12.0 25 41-65 335-359 (1057)
8 1a7g_E E2 DBD, regulatory prot 9.5 1.1E+02 0.0037 21.1 1.1 16 31-46 52-67 (82)
9 1r8h_A Regulatory protein E2; 9.0 1.1E+02 0.0038 21.3 1.0 16 31-46 54-69 (87)
10 1q90_L Cytochrome B6F complex 8.3 3.3E+02 0.011 15.3 3.1 17 119-135 10-26 (32)
No 1
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=16.23 E-value=1e+02 Score=18.58 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=21.0
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHHH
Q 026523 144 KGKDFSFLGPILFTSLIILILTSFMQ 169 (237)
Q Consensus 144 tk~d~~~~g~~L~~~l~~liv~~l~~ 169 (237)
-|.|.+..++++.-.+.++.+++++.
T Consensus 15 G~~Dm~si~~~IVGaLvil~VAGLiy 40 (46)
T 1pfi_A 15 GQGDMKAIGGYIVGALVILAVAGLIY 40 (46)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999888888888888753
No 2
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=12.07 E-value=2.8e+02 Score=17.03 Aligned_cols=12 Identities=0% Similarity=0.080 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHH
Q 026523 37 QLRWGFIRKVYG 48 (237)
Q Consensus 37 ~~r~~fl~kvY~ 48 (237)
-.|++|+.++-.
T Consensus 9 m~RRqfln~l~~ 20 (49)
T 1q90_R 9 MNKRNIMNLILA 20 (49)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 457788876543
No 3
>2q79_A Regulatory protein E2; beta barrel, DNA binding protein; 1.80A {Human papillomavirus type 16} SCOP: d.58.8.1 PDB: 1by9_A 1r8p_A 1zzf_A 3mi7_X
Probab=10.48 E-value=92 Score=22.06 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.9
Q ss_pred cccccHHHHHHHHHHH
Q 026523 31 LSYGENQLRWGFIRKV 46 (237)
Q Consensus 31 ~~~~~~~~r~~fl~kv 46 (237)
+.|.+++.|++|+..|
T Consensus 51 v~F~s~~QR~~FL~tV 66 (93)
T 2q79_A 51 LTYDSEWQRDQFLSQV 66 (93)
T ss_dssp EECSSHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHhcC
Confidence 6699999999999865
No 4
>4iao_C Regulatory protein SIR4; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=10.45 E-value=97 Score=23.88 Aligned_cols=17 Identities=6% Similarity=-0.333 Sum_probs=0.0
Q ss_pred CCCCCCCCCccCccCCC
Q 026523 7 VRSKDDGKFEVDLEGGD 23 (237)
Q Consensus 7 ~~~~~~~~~~~~~e~~~ 23 (237)
+++|++.+|..|||+-.
T Consensus 56 ~~~~~~a~~~~DPe~er 72 (159)
T 4iao_C 56 EKDQIQAGKWFDPVLDW 72 (159)
T ss_dssp -----------------
T ss_pred ccchhhcccccCHHHHH
Confidence 46677777777887764
No 5
>1f9f_A Regulatory protein E2; dimeric beta barrel, activator, DNA-binding, trans-acting factor, transcription; 1.90A {Human papillomavirus type 18} SCOP: d.58.8.1 PDB: 1jj4_A
Probab=10.12 E-value=94 Score=21.45 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.9
Q ss_pred cccccHHHHHHHHHHH
Q 026523 31 LSYGENQLRWGFIRKV 46 (237)
Q Consensus 31 ~~~~~~~~r~~fl~kv 46 (237)
+.|.+++.|++|+..|
T Consensus 53 v~F~s~~QR~~FL~~V 68 (83)
T 1f9f_A 53 VTYHSETQRTKFLNTV 68 (83)
T ss_dssp EECSSHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHhcC
Confidence 6699999999999865
No 6
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=10.08 E-value=1.2e+03 Score=23.01 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026523 40 WGFIRKVYGILTAQIVLTTLVSSITV 65 (237)
Q Consensus 40 ~~fl~kvY~~l~~~l~it~~~~~~~~ 65 (237)
++-.+.+...+..++++..+..++..
T Consensus 334 ~~~~~~~~~~~~~~~~lv~lvl~~~~ 359 (1052)
T 2v50_A 334 SASIHEVVKTLGEAILLVFLVMYLFL 359 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444433
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=9.60 E-value=1.2e+03 Score=22.86 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026523 41 GFIRKVYGILTAQIVLTTLVSSITV 65 (237)
Q Consensus 41 ~fl~kvY~~l~~~l~it~~~~~~~~ 65 (237)
+-++.+...+..++++..+..++.+
T Consensus 335 ~~~~~~~~~~~~~~~lv~~vl~~~~ 359 (1057)
T 4dx5_A 335 ISIHEVVKTLVEAIILVFLVMYLFL 359 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555565556666555555544443
No 8
>1a7g_E E2 DBD, regulatory protein E2; transcription regulation, cervical cance; 2.40A {Human papillomavirus type 31} SCOP: d.58.8.1 PDB: 1dhm_A
Probab=9.47 E-value=1.1e+02 Score=21.12 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.9
Q ss_pred cccccHHHHHHHHHHH
Q 026523 31 LSYGENQLRWGFIRKV 46 (237)
Q Consensus 31 ~~~~~~~~r~~fl~kv 46 (237)
+.|.+++.|+.|+..|
T Consensus 52 v~F~s~~QR~~FL~~V 67 (82)
T 1a7g_E 52 LTYISTSQRDDFLNTV 67 (82)
T ss_dssp EECSCHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHhcC
Confidence 6699999999999865
No 9
>1r8h_A Regulatory protein E2; anti-parallel beta-barrel, DNA-binding domain, transcription, replication; 1.90A {Human papillomavirus type 6A} SCOP: d.58.8.1 PDB: 2ayb_A 2aye_A 2ayg_A
Probab=9.01 E-value=1.1e+02 Score=21.32 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.9
Q ss_pred cccccHHHHHHHHHHH
Q 026523 31 LSYGENQLRWGFIRKV 46 (237)
Q Consensus 31 ~~~~~~~~r~~fl~kv 46 (237)
+.|.+++.|+.|+..|
T Consensus 54 v~F~s~~QR~~FL~~V 69 (87)
T 1r8h_A 54 VTYHSEEQRQQFLNVV 69 (87)
T ss_dssp EECSSHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHhcC
Confidence 6699999999999865
No 10
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=8.29 E-value=3.3e+02 Score=15.26 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026523 119 IVLEALILTSAVVCSLT 135 (237)
Q Consensus 119 iV~~A~~~Ta~if~~ls 135 (237)
.+..|+..|.+.|++++
T Consensus 10 fL~~al~~t~~lfiGL~ 26 (32)
T 1q90_L 10 LLIGALVFTLGIYLGLL 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34556666777776664
Done!