Query 026523
Match_columns 237
No_of_seqs 122 out of 1080
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 15:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026523.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026523hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 27.1 32 0.0023 20.6 3.6 23 39-61 1-23 (64)
2 d1iwga7 f.35.1.1 (A:7-37,A:331 13.7 2.2E+02 0.016 20.3 8.9 21 42-62 37-57 (199)
3 d1mwpa_ d.170.2.1 (A:) N-termi 9.5 73 0.0053 21.0 2.0 36 13-48 14-51 (96)
4 d1f9fa_ d.58.8.1 (A:) Papillom 9.5 49 0.0035 21.2 1.0 17 30-46 50-66 (81)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.0 3.7E+02 0.027 20.1 8.0 32 77-108 26-57 (248)
6 d1a7ge_ d.58.8.1 (E:) Papillom 8.5 58 0.0043 20.8 1.1 16 31-46 52-67 (82)
7 d2q79a1 d.58.8.1 (A:284-362) P 7.7 66 0.0048 20.4 1.1 16 31-46 50-65 (79)
8 d1r8ha_ d.58.8.1 (A:) Papillom 7.3 68 0.005 20.7 1.0 16 31-46 54-69 (87)
9 d2bopa_ d.58.8.1 (A:) Papillom 6.7 76 0.0055 20.4 1.0 16 31-46 53-68 (85)
10 d2nn4a1 a.272.1.1 (A:1-62) Hyp 5.0 1.4E+02 0.011 17.8 1.5 12 194-205 3-14 (62)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=27.08 E-value=32 Score=20.61 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026523 39 RWGFIRKVYGILTAQIVLTTLVS 61 (237)
Q Consensus 39 r~~fl~kvY~~l~~~l~it~~~~ 61 (237)
|++...|+...++.=++.-...+
T Consensus 1 r~N~~mk~lT~it~iflP~t~i~ 23 (64)
T d2iuba2 1 KTNEVMKVLTIIATIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777776655544333
No 2
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.69 E-value=2.2e+02 Score=20.34 Aligned_cols=21 Identities=33% Similarity=0.325 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026523 42 FIRKVYGILTAQIVLTTLVSS 62 (237)
Q Consensus 42 fl~kvY~~l~~~l~it~~~~~ 62 (237)
-++++...+..++++..+..+
T Consensus 37 si~~~~~~l~ia~~lv~~vl~ 57 (199)
T d1iwga7 37 SIHEVVKTLVEAIILVFLVMY 57 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666555443
No 3
>d1mwpa_ d.170.2.1 (A:) N-terminal domain of the amyloid precursor protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.48 E-value=73 Score=21.04 Aligned_cols=36 Identities=11% Similarity=0.187 Sum_probs=22.3
Q ss_pred CCCccCccCCCCCCCCCcc--ccccHHHHHHHHHHHHH
Q 026523 13 GKFEVDLEGGDGERLYPGL--SYGENQLRWGFIRKVYG 48 (237)
Q Consensus 13 ~~~~~~~e~~~~~~~~~~~--~~~~~~~r~~fl~kvY~ 48 (237)
.+.++|.|+|+|+.-=++- -+.++..-.++-||+|.
T Consensus 14 ~~~h~~~~~G~W~~D~s~~~~C~~~k~~IL~YCqk~YP 51 (96)
T d1mwpa_ 14 LNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYP 51 (96)
T ss_dssp BCEEECTTTCCEEECTTSCCBCCCSHHHHHHHHHHHST
T ss_pred cceeccccCCceeeCCCCCccccCChHHHHHHHHHHCC
Confidence 3447788988874221111 14566666679999984
No 4
>d1f9fa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Human papillomavirus type 18 [TaxId: 333761]}
Probab=9.47 E-value=49 Score=21.21 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.1
Q ss_pred ccccccHHHHHHHHHHH
Q 026523 30 GLSYGENQLRWGFIRKV 46 (237)
Q Consensus 30 ~~~~~~~~~r~~fl~kv 46 (237)
.+.|.|++.|++|+..|
T Consensus 50 lv~F~s~~QR~~FL~~V 66 (81)
T d1f9fa_ 50 TVTYHSETQRTKFLNTV 66 (81)
T ss_dssp EEECSSHHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHhcC
Confidence 36699999999999864
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=8.96 E-value=3.7e+02 Score=20.14 Aligned_cols=32 Identities=3% Similarity=-0.072 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 026523 77 NSGLLLFLSILPFILLWPLHVYHQKHPVNLIV 108 (237)
Q Consensus 77 ~~~l~~~~~i~~~~~~~~l~~~~~~~p~~~~~ 108 (237)
..|.+.+.+++..+...++...+|..|.+|++
T Consensus 26 ~~~~~a~~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 26 GEYLFAITTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp GCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred chHHHHHHHHHHHHheEEEEEccCccceehhh
Confidence 34543433333333444555567778988764
No 6
>d1a7ge_ d.58.8.1 (E:) Papillomavirus-1 E2 protein {Human papillomavirus type 31 [TaxId: 10585]}
Probab=8.48 E-value=58 Score=20.83 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.7
Q ss_pred cccccHHHHHHHHHHH
Q 026523 31 LSYGENQLRWGFIRKV 46 (237)
Q Consensus 31 ~~~~~~~~r~~fl~kv 46 (237)
+.|.+++.|++|+..|
T Consensus 52 v~F~s~~QR~~FL~~V 67 (82)
T d1a7ge_ 52 LTYISTSQRDDFLNTV 67 (82)
T ss_dssp EECSCHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHhcC
Confidence 6699999999999864
No 7
>d2q79a1 d.58.8.1 (A:284-362) Papillomavirus-1 E2 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=7.71 E-value=66 Score=20.39 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.6
Q ss_pred cccccHHHHHHHHHHH
Q 026523 31 LSYGENQLRWGFIRKV 46 (237)
Q Consensus 31 ~~~~~~~~r~~fl~kv 46 (237)
+.|.+++.|.+|+..|
T Consensus 50 v~F~s~~QR~~FL~~V 65 (79)
T d2q79a1 50 LTYDSEWQRDQFLSQV 65 (79)
T ss_dssp EECSSHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHhcC
Confidence 5699999999999864
No 8
>d1r8ha_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Human papillomavirus type 6a [TaxId: 37122]}
Probab=7.33 E-value=68 Score=20.74 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.7
Q ss_pred cccccHHHHHHHHHHH
Q 026523 31 LSYGENQLRWGFIRKV 46 (237)
Q Consensus 31 ~~~~~~~~r~~fl~kv 46 (237)
+.|.+++.|+.|+..|
T Consensus 54 v~F~s~~QR~~FL~~V 69 (87)
T d1r8ha_ 54 VTYHSEEQRQQFLNVV 69 (87)
T ss_dssp EECSSHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHhcC
Confidence 6699999999999864
No 9
>d2bopa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Bovine papillomavirus type 1 [TaxId: 10559]}
Probab=6.70 E-value=76 Score=20.39 Aligned_cols=16 Identities=25% Similarity=0.677 Sum_probs=13.6
Q ss_pred cccccHHHHHHHHHHH
Q 026523 31 LSYGENQLRWGFIRKV 46 (237)
Q Consensus 31 ~~~~~~~~r~~fl~kv 46 (237)
+.|.+++.|..|+..|
T Consensus 53 v~F~s~~QR~~FL~~V 68 (85)
T d2bopa_ 53 ITFGSPSQRQDFLKHV 68 (85)
T ss_dssp EEESSHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHhcC
Confidence 6699999999998864
No 10
>d2nn4a1 a.272.1.1 (A:1-62) Hypothetical protein YqgQ {Bacillus subtilis [TaxId: 1423]}
Probab=4.98 E-value=1.4e+02 Score=17.85 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=9.5
Q ss_pred HHHHHHHhhhcC
Q 026523 194 IVYDTDNLIKRF 205 (237)
Q Consensus 194 l~yDTq~i~~~~ 205 (237)
++||.|+..+++
T Consensus 3 tlYDVqQLLK~f 14 (62)
T d2nn4a1 3 TFYDVQQLLKTF 14 (62)
T ss_dssp SHHHHHHHHHTT
T ss_pred cHHHHHHHHHHC
Confidence 368999998765
Done!