BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026524
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/139 (70%), Positives = 110/139 (79%)
Query: 74 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
V+ DVD GKP GR+V+ L DVVPKTAENFRALCTGEKG+GYKG +FHR+I FM Q
Sbjct: 7 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 66
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +
Sbjct: 67 DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 126
Query: 194 HVVFGHVIDGMDVVRKLES 212
HVVFGHVI+GMDVV+K+ES
Sbjct: 127 HVVFGHVIEGMDVVKKIES 145
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/139 (70%), Positives = 110/139 (79%)
Query: 74 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
V+ DVD GKP GR+V+ L DVVPKTAENFRALCTGEKG+GYKG +FHR+I FM Q
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 65
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +
Sbjct: 66 DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 125
Query: 194 HVVFGHVIDGMDVVRKLES 212
HVVFGHVI+GMDVV+K+ES
Sbjct: 126 HVVFGHVIEGMDVVKKIES 144
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/139 (70%), Positives = 110/139 (79%)
Query: 74 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
V+ DVD GKP GR+V+ L DVVPKTAENFRALCTGEKG+GYKG +FHR+I FM Q
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 65
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +
Sbjct: 66 DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 125
Query: 194 HVVFGHVIDGMDVVRKLES 212
HVVFGHVI+GMDVV+K+ES
Sbjct: 126 HVVFGHVIEGMDVVKKIES 144
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 207 bits (528), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/139 (70%), Positives = 110/139 (79%)
Query: 74 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
V+ DVD GKP GR+V+ L DVVPKTAENFRALCTGEKG+GYKG +FHR+I FM Q
Sbjct: 5 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 64
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +
Sbjct: 65 DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 124
Query: 194 HVVFGHVIDGMDVVRKLES 212
HVVFGHVI+GMDVV+K+ES
Sbjct: 125 HVVFGHVIEGMDVVKKIES 143
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/166 (62%), Positives = 115/166 (69%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
VT KVFFDV IG K GRIV+GLFG VVPKT ENF AL TGEKGYGYKG FHR+IKDFM
Sbjct: 14 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFM 73
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
IQ +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI K W
Sbjct: 74 IQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 133
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 235
LD +HVVFG VIDGM VV +E T D P C IINSG++ +
Sbjct: 134 LDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDV 179
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/166 (60%), Positives = 116/166 (69%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
VT KVFFDV IG K GRIV+GLFG+VVPKT ENF AL TGEKGYGYKG FHR+IKDFM
Sbjct: 6 VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFM 65
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
IQ +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI K W
Sbjct: 66 IQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 125
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 235
LD +HVVFG V+DGM VV +E T D P C I+NSG++ +
Sbjct: 126 LDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV 171
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 113/168 (67%)
Query: 69 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
KVT +V+FD++IGGKP GRIV+GLFG VPKTA NF L KG GY G FHR+I DF
Sbjct: 4 KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
MIQ SIYG F DE+F LKH G G LSMANAG +TNGSQFFI TVKTP
Sbjct: 64 MIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTP 123
Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
WLD RHVVFG +++GMDVVRK+E E D PK I SG + +D
Sbjct: 124 WLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVD 171
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 196 bits (499), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/169 (59%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRI 124
+KVFFD+ IGGK +GRIVM L+ DVVPKTA NFRALCTGE G G +KG FHRI
Sbjct: 4 SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRI 63
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
I +FMIQ SIYG F DE+F KH GPGVLSMANAGPNTNGSQFF+CT
Sbjct: 64 IPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCT 123
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
VKT WLD +HVVFG V++G+DVV+ +ES S++ P C I + G+L
Sbjct: 124 VKTEWLDGKHVVFGRVVEGLDVVKAVES-NGSQSGKPVKDCMIADCGQL 171
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 118/168 (70%)
Query: 69 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
KVT KV+FD+ IG + GR+V+GLFG VPKT +NF AL TGEKG+GYK FHR+IKDF
Sbjct: 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDF 69
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
MIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT
Sbjct: 70 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 129
Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
WLD +HVVFG V++GM+VVRK+E+ +T D P I + G++ ++
Sbjct: 130 WLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVE 177
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 196 bits (497), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 118/168 (70%)
Query: 69 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
KVT KV+FD+ IG + GR+V+GLFG VPKT +NF AL TGEKG+GYK FHR+IKDF
Sbjct: 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDF 69
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
MIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT
Sbjct: 70 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 129
Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
WLD +HVVFG V++GM+VVRK+E+ +T D P I + G++ ++
Sbjct: 130 WLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVE 177
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 117/168 (69%)
Query: 69 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
KVT KV+FD+ IG + GR++ GLFG VPKT +NF AL TGEKG+GYK FHR+IKDF
Sbjct: 13 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDF 72
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
MIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT
Sbjct: 73 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 132
Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
WLD +HVVFG V++GM+VVRK+ES +T D P I + G++ ++
Sbjct: 133 WLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 180
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/168 (56%), Positives = 117/168 (69%)
Query: 69 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 128
KVT KV+FD+ IG + GR++ GLFG VPKT +NF AL TGEKG+GYK FHR+IKDF
Sbjct: 3 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDF 62
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
MIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT
Sbjct: 63 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 122
Query: 189 WLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 236
WLD +HVVFG V++GM+VVRK+ES +T D P I + G++ ++
Sbjct: 123 WLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVE 170
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 193 bits (490), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Query: 59 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 118
S +++ Q V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG
Sbjct: 10 SGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKG 69
Query: 119 CSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 178
FHRII FM Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGS
Sbjct: 70 SCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGS 129
Query: 179 QFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
QFFICT KT WLD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 130 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 183
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/167 (57%), Positives = 115/167 (68%), Gaps = 1/167 (0%)
Query: 67 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126
Q + +VFFD+ IG AGRIVM L D+VP+TAENFRALCTGE+G+GY C FHR+I
Sbjct: 6 QKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIP 65
Query: 127 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
FM Q SIYG F+DE+F L+H G GVLSMAN+GPNTNGSQFFICT K
Sbjct: 66 QFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTK 125
Query: 187 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
WLD +HVVFG V+DG +VV+K+ESV S++ K P I GEL
Sbjct: 126 CDWLDGKHVVFGRVVDGQNVVKKMESV-GSKSGKVKEPVIISRCGEL 171
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/167 (56%), Positives = 113/167 (67%), Gaps = 1/167 (0%)
Query: 67 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126
+ +VT KV+FDV I +P GRI +GLFG P T ENFR LCTGE G+GYK FHR+I+
Sbjct: 7 EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQ 66
Query: 127 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
+FMIQ SIYG F DE+ +KH G LSMANAGPNTNGSQFFI T
Sbjct: 67 NFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAP 125
Query: 187 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
TPWLD RHVVFG V+DGMDVV ++E +T+ D P P +I+ SGEL
Sbjct: 126 TPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 191 bits (485), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/169 (59%), Positives = 113/169 (66%), Gaps = 9/169 (5%)
Query: 73 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 124
+VFFDVDIGG+ GRIV+ LF D+VPKTAENFRALCTGEKG G +KGC FHRI
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
IK FMIQ SIYG FEDE+F KH G+LSMANAG NTNGSQFFI T
Sbjct: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 136
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
V TP LD +HVVFG VI GM V + LE+VE + + P C I GEL
Sbjct: 137 VPTPHLDGKHVVFGQVIKGMGVAKILENVEV-KGEKPAKLCVIAECGEL 184
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 190 bits (482), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 189 bits (481), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 189 bits (481), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 189 bits (481), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 121 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 163
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 189 bits (481), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 90/164 (54%), Positives = 117/164 (71%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
VT KV+FD+ IG +P GR+V+GLFG+ VPKT ENF+ L +GE G+GYKG FHR+I++FM
Sbjct: 4 VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFM 63
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
IQ SIYG+ F+DE+ +KH G +SMANAGPN+NGSQFF+ T TPW
Sbjct: 64 IQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPW 122
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD RHVVFG V++GMDVV+K+E+ +T D PK +I + G L
Sbjct: 123 LDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 189 bits (481), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 10 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 69
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 70 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 129
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 130 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 172
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 120
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 121 LDGKHVVFGAVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 163
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 112/167 (67%), Gaps = 1/167 (0%)
Query: 67 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126
+ +VT KV+FDV I +P GRI +GLFG P T ENFR LCTGE G+GYK FHR+I+
Sbjct: 7 EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQ 66
Query: 127 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
+FMIQ SIYG F DE+ +KH G LSMANAGPNTNGSQFFI T
Sbjct: 67 NFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAP 125
Query: 187 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
TPWLD HVVFG V+DGMDVV ++E +T+ D P P +I+ SGEL
Sbjct: 126 TPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/164 (56%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FH+II FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/164 (56%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+L+MANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +GM++V +E SR I + G+L
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/162 (56%), Positives = 113/162 (69%), Gaps = 1/162 (0%)
Query: 72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQ 131
++V+FDV+ G+P GR+V L+ D+VPKTAENFRALCTGEKG+GY G FHR+I DFM+Q
Sbjct: 2 SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQ 61
Query: 132 XXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 191
SIYG F DE+F H PG+LSMANAGPNTNGSQFFI TV PWLD
Sbjct: 62 GGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLD 121
Query: 192 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
+HVVFG V+DG D+V+K+ES+ S + K + SGEL
Sbjct: 122 GKHVVFGEVVDGYDIVKKVESL-GSPSGATKARIVVAKSGEL 162
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD HVVFG V +GM++V +E SR I + G+L
Sbjct: 122 LDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 121
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD HVVFG V +GM++V +E SR I + G+L
Sbjct: 122 LDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 164
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 6 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 65
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 66 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 125
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD HVVFG V +GM++V +E SR I + G+L
Sbjct: 126 LDGXHVVFGKVKEGMNIVEAMERF-GSRNGKTSKKITIADCGQL 168
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/164 (56%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT KT W
Sbjct: 61 CQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +GM++V ++ SR I + G+L
Sbjct: 121 LDGKHVVFGKVKEGMNIVEAMKRF-GSRNGKTSKKITIADCGQL 163
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/169 (54%), Positives = 116/169 (68%), Gaps = 1/169 (0%)
Query: 64 VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHR 123
+ +A+ +V+ D+ IG KPAGRI M L DVVP TAENFR LCT EKG+G+KG SFHR
Sbjct: 4 IAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 63
Query: 124 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 183
II FM Q SIYG F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+
Sbjct: 64 IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 123
Query: 184 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 232
KT WLD +HVVFG V +G+DV+R++E+ + S+ PK I + GE
Sbjct: 124 CDKTDWLDGKHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 171
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 186 bits (473), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 116/176 (65%), Gaps = 15/176 (8%)
Query: 73 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRII 125
KVFFD+ I K AGRIVM L+ D VPKTAENFRALCTGEKG G YK FHR+I
Sbjct: 9 KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 126 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLK---HVGPGVLSMANAGPNTNGSQFFI 182
+FMIQ SIYG++F DESF K H G G LSMANAGPNTNGSQFFI
Sbjct: 69 PNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFI 128
Query: 183 CTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS--GELPLD 236
CT TPWLD +HVVFG VIDG+DVV+K+E + +S K RI+ S GE+ D
Sbjct: 129 CTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSG---KTRSRIVVSDCGEVAAD 181
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 112/160 (70%), Gaps = 1/160 (0%)
Query: 73 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQX 132
+V+ D+ IG KPAGRI M L DVVP TAENFR LCT EKG+G+KG SFHRII FM Q
Sbjct: 5 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 64
Query: 133 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDN 192
SIYG F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+ KT WLD
Sbjct: 65 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 124
Query: 193 RHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 232
+HVVFG V +G+DV+R++E+ + S+ PK I + GE
Sbjct: 125 KHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 163
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/160 (58%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Query: 72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQ 131
+ VFFD+ G P G I LF DVVPKTA NFRALCTGEKG+GY G FHR+I DFM+Q
Sbjct: 2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQ 61
Query: 132 XXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLD 191
SIYG+ F DE+F LKH PG+LSMANAGPNTNGSQFFI TV T WLD
Sbjct: 62 GGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLD 121
Query: 192 NRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 231
+HVVFG VIDGM+VV+ +E+ E S + P+ I G
Sbjct: 122 GKHVVFGEVIDGMNVVKAIEA-EGSGSGKPRSRIEIAKCG 160
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 181 bits (458), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/164 (55%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 129
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII F
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFX 60
Query: 130 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPW 189
Q SIYG FEDE+F+LKH GPG+LS ANAGPNTNGSQFFICT KT W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEW 120
Query: 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
LD +HVVFG V +G ++V E SR I + G+L
Sbjct: 121 LDGKHVVFGKVKEGXNIVEAXERF-GSRNGKTSKKITIADCGQL 163
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Query: 64 VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHR 123
+ +A+ +V+ D+ IG KPAGRI L DVVP TAENFR LCT EKG+G+KG SFHR
Sbjct: 5 IAKKARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHR 64
Query: 124 IIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFIC 183
II F Q SIYG F+DE+F+LKH GPG+LS AN+GPNTNGSQFF+
Sbjct: 65 IIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLT 124
Query: 184 TVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 232
KT WLD +HVVFG V +G+DV+R++E+ + S+ PK I + GE
Sbjct: 125 CDKTDWLDGKHVVFGEVTEGLDVLRQIEA-QGSKDGKPKQKVIIADCGE 172
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 110/169 (65%), Gaps = 5/169 (2%)
Query: 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-----KGYGYKGCSFHRI 124
V VFFDV IGG+ GR+ + LF DVVPKTAENFR CTGE GYKG +FHR+
Sbjct: 9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRV 68
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
IKDFMIQ SIY F DE+F L+H PG+LSMAN+GP+TNG QFFI
Sbjct: 69 IKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITC 128
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
K WLD +HVVFG +IDG+ V+RK+E+V T + PK+P I GE+
Sbjct: 129 SKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 173 bits (438), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 106/169 (62%), Gaps = 8/169 (4%)
Query: 73 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 124
+ FFD+ I +PAGR+V LF DV PKT ENFR LCTGEKG G YK C FHR+
Sbjct: 28 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
+KDFM+Q SIYG FEDESF +KH +LSMAN G +TNGSQFFI T
Sbjct: 88 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITT 147
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
TP LD HVVFG VI G +VVR++E+ +T P RI++ GEL
Sbjct: 148 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 106/169 (62%), Gaps = 8/169 (4%)
Query: 73 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 124
+ FFD+ I +PAGR+V LF DV PKT ENFR LCTGEKG G YK C FHR+
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
+KDFM+Q SIYG FEDESF +KH +LSMAN G +TNGSQFFI T
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
TP LD HVVFG VI G +VVR++E+ +T P RI++ GEL
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/159 (56%), Positives = 101/159 (63%), Gaps = 7/159 (4%)
Query: 74 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIK 126
V+FD+ IG PAGRI M LF D VP TAENFRALCTGEKG G Y G FHRII
Sbjct: 22 VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 127 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
FMIQ SIYGS F DE+FV H P +LSMANAGPNTNGSQFFI TV
Sbjct: 82 QFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVP 141
Query: 187 TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPC 225
PWLD +HVVFG V++GM+VV+ +E + K C
Sbjct: 142 CPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVC 180
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/138 (57%), Positives = 97/138 (70%)
Query: 74 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
VFF++ I KP GRIV L+ + VPKTA+NFR L TG+ G+GYK FHR+I FM+Q
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 64
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
SIYG F DE+F +KH PG+LSMANAG NTNGSQFFI TV T WLD +
Sbjct: 65 DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGK 124
Query: 194 HVVFGHVIDGMDVVRKLE 211
HVVFG VI+G+D+VRK+E
Sbjct: 125 HVVFGEVIEGLDIVRKVE 142
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/138 (57%), Positives = 97/138 (70%)
Query: 74 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
VFF++ I KP GRIV L+ + VPKTA+NFR L TG+ G+GYK FHR+I FM+Q
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 65
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
SIYG F DE+F +KH PG+LSMANAG NTNGSQFFI TV T WLD +
Sbjct: 66 DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGK 125
Query: 194 HVVFGHVIDGMDVVRKLE 211
HVVFG VI+G+D+VRK+E
Sbjct: 126 HVVFGEVIEGLDIVRKVE 143
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 107/168 (63%), Gaps = 7/168 (4%)
Query: 72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHRII 125
+KVFFD+ I AGRI+ LF D+ P+T ENFRALCTGEK YK FHRII
Sbjct: 4 SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63
Query: 126 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 185
FM Q SIYG SF DE+F +KH PG+LSMANAGPNTN SQFFI V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 186 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
PWLD +HVVFG VI+GM+VVR++E E +++ Y K I + GEL
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEK-EGAKSGYVKRSVVITDCGEL 170
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 105/169 (62%), Gaps = 8/169 (4%)
Query: 73 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 124
+ FFD+ I +PAGR+V LF DV PKT ENFR LCTGEKG G YK FHR+
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 125 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 184
+KDFM+Q SIYG FEDESF +KH +LSMAN G +TNGSQFFI T
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 185 VKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
TP LD HVVFG VI G +VVR++E+ +T P RI++ GEL
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 166 bits (421), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 105/168 (62%), Gaps = 7/168 (4%)
Query: 72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHRII 125
+KVFFD+ I AGRI+ LF D+ P+T ENFRALCTGEK YK FHRII
Sbjct: 4 SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63
Query: 126 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 185
FM Q SIYG SF DE+F +KH PG+LSMANAGPNTN SQF I V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 186 KTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
PWLD +HVVFG VI+GM+VVR++E E +++ Y K I + GE
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEK-EGAKSGYVKRSVVITDCGEW 170
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 96/139 (69%)
Query: 74 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 133
VFFDV G+P GRI M LF ++VP+TAENFRALCTGEKG+G+K FHR+I DF+ Q
Sbjct: 9 VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGG 68
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
SIYG FEDE+F +KH GPG+LSMAN G NTN SQF I K LD +
Sbjct: 69 DITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFK 128
Query: 194 HVVFGHVIDGMDVVRKLES 212
HVVFG V DGMD V+K+ES
Sbjct: 129 HVVFGFVKDGMDTVKKIES 147
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 66 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YK 117
+ K +VF DV I G AGRIVM L+ D+ P+T NF LCTG G G YK
Sbjct: 1 MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYK 60
Query: 118 GCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 177
G +FHR+IK+FMIQ SIYG F+DE FV+KH P V+SMAN GPNTNG
Sbjct: 61 GSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNG 120
Query: 178 SQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
SQFFI T P L+N HVVFG V+ G +VV K+E ++T+ + P I+N GEL
Sbjct: 121 SQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 97/152 (63%), Gaps = 6/152 (3%)
Query: 59 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 118
SMAK+ + V+FDV + GRIVM L D+VPKTA+NFR LC KG GYKG
Sbjct: 21 SMAKEA------SGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKG 74
Query: 119 CSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 178
+FHRII FM+Q SIYG F DE+F LKH G+LSMAN G +TNGS
Sbjct: 75 STFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGS 134
Query: 179 QFFICTVKTPWLDNRHVVFGHVIDGMDVVRKL 210
QFFI KT WLD +HVVFG V++GMDVV K+
Sbjct: 135 QFFITLGKTQWLDEKHVVFGEVVEGMDVVHKI 166
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 154 bits (388), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 106/168 (63%), Gaps = 8/168 (4%)
Query: 74 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY-----GYKGCSFHRIIKDF 128
VF D+++G G+ LF ++VPKT+ENFR CTGE GYK FHR+IK+F
Sbjct: 62 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 121
Query: 129 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTP 188
MIQ +SIYG F+DE+F +KH G+LSMAN+GPNTNG QFFI T K
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181
Query: 189 WLDNRHVVFGHVIDG--MDVVRKLESVETSRTDY-PKVPCRIINSGEL 233
WLD ++VVFG +ID + +++K+E+V + Y PK+P ++ GEL
Sbjct: 182 WLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 103/166 (62%), Gaps = 8/166 (4%)
Query: 76 FDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRIIKD 127
FD++I +P GRI+ LF D+ PKT +NF LC+GEKG G YKG +FHR++K+
Sbjct: 24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83
Query: 128 FMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKT 187
FMIQ SIYG F+DE+F+LKH +LSMAN G +TNGSQFFI T
Sbjct: 84 FMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPA 143
Query: 188 PWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233
P LD HVVFG VI G +V+ ++E+++T P R+I+ G L
Sbjct: 144 PHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 101/170 (59%), Gaps = 8/170 (4%)
Query: 72 TKVFFDVD-----IGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126
++VFFDV+ GRIV LF VPKTA+NFR LC G GY+ +FHRII
Sbjct: 3 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIP 62
Query: 127 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 186
+FMIQ SIYG F DE+F KH G+LSMANAGPNTNGSQFFI T
Sbjct: 63 NFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAV 122
Query: 187 TPWLDNRHVVFGHVID--GMDVVRKLESV-ETSRTDYPKVPCRIINSGEL 233
T WLD +HVVFG V D VV+++E++ +S + +I+N GEL
Sbjct: 123 TSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G I LF PKT ENF C + Y G +FHRIIK FMIQ S
Sbjct: 31 GDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGE-S 86
Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
I+G FEDE L+H P LSMANAG NTNGSQFFI V TPWLDN+H VFG V GM
Sbjct: 87 IWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGM 146
Query: 205 DVVRKLESVETS-RTDYPKVPCRIIN 229
+VV+++ +V+ + +TD P IIN
Sbjct: 147 EVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G IV+ L+ PKT +NF L +GY Y G FHRIIKDFMIQ S
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-S 76
Query: 146 IYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
IYG FEDE LK G G+L+MANAGP+TNGSQFF+ T WLD +H +FG V G+
Sbjct: 77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 205 DVVRKLESVETSRTDYPKVPCRIINS 230
+V ++ VET+ D P +II +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G IV+ L+ PKT +NF L +GY Y G FHRIIKDFMIQ S
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-S 76
Query: 146 IYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
IYG FEDE LK G G+L+MANAGP+TNGSQFF+ T WLD +H +FG V G+
Sbjct: 77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 205 DVVRKLESVETSRTDYPKVPCRIINS 230
+V ++ VET+ D P +II +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G IV+ L+ PKT +NF L +GY Y G FHRIIKDFMIQ S
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-S 76
Query: 146 IYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
IYG FEDE LK G G+L+MANAGP+TNGSQFF+ T WLD +H +FG V G+
Sbjct: 77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 205 DVVRKLESVETSRTDYPKVPCRIINS 230
+V ++ VET+ D P +II +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKA 162
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G I + LF KT +NF GY Y C FHR+IK FM+Q S
Sbjct: 15 GDIHISLFYKECKKTVQNFSVHSIN--GY-YNNCIFHRVIKHFMVQTGDPSGDGTGGE-S 70
Query: 146 IYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
I+G+ FEDE F L H P ++SMAN GPNTNGSQFFI TV PWLD +H VFG V G
Sbjct: 71 IWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGS 130
Query: 205 DVVRKLESVETSRTDYPKVPCRIIN 229
+V +E V T + D P +I+N
Sbjct: 131 KIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 85 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 144
G I + +F + PKT ENF ALC Y GC FHR IK FM+Q
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTGTGRGGN- 64
Query: 145 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDG 203
SI+G FEDE S LKH GV+SMAN GPNTNGSQFFI K P LD ++ VFG VIDG
Sbjct: 65 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDG 124
Query: 204 MDVVRKLESVETSRTDY 220
++ + +LE + + Y
Sbjct: 125 LETLDELEKLPVNEKTY 141
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G I + +F + PKT ENF ALC Y GC FHR IK FM+Q S
Sbjct: 16 GDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTGTGRGGN-S 71
Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
I+G FEDE S LKH GV+SMAN GPNTNGSQFFI K P LD ++ VFG VIDG+
Sbjct: 72 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGL 131
Query: 205 DVVRKLESVETSRTDY 220
+ + +LE + + Y
Sbjct: 132 ETLDELEKLPVNEKTY 147
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 83/144 (57%), Gaps = 6/144 (4%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G + + L D+ PKT ENF LC K + Y G FHR I++F+IQ S
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGE-S 84
Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
+G F+DE L H G G+LSMAN+GPN+N SQFFI +LD +H +FG V+ G
Sbjct: 85 YWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGF 144
Query: 205 DVVRKLESVETS-RTDYPKVPCRI 227
DV+ +E+VE+ +TD PK RI
Sbjct: 145 DVLTAMENVESDPKTDRPKEEIRI 168
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 72/156 (46%), Gaps = 17/156 (10%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYG------------YKGCSFHRIIKDFMIQXX 133
G I + LFG+ PKT NF L G K Y Y G FHR+I+ FMIQ
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 134 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
+ F E L+ P +L+MANAGP TNGSQFFI KTP L+ R
Sbjct: 93 DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 194 HVVFGHVIDG--MDVVRKLESVETSRTDYPKVPCRI 227
H +FG VID VV + T D P P I
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G + L+ PKT NF LC E G+ Y FHR+I +F+IQ S
Sbjct: 48 GDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTGTGKGGK-S 103
Query: 146 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGM 204
IYG FEDE + LKH G G+LSM+N GPNTN SQFFI P LD +H +F V M
Sbjct: 104 IYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNM 163
Query: 205 DVVRKLESVETSRTDYPKVPCRII 228
+ + SV+T+ T+ P +I+
Sbjct: 164 TCIENIASVQTTATNKPIFDLKIL 187
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G + LF PK +NF AL GY YK FH+ IK F+IQ S
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSA--SGY-YKNTIFHKNIKGFIIQGGDPTGTGKGGE-S 81
Query: 146 IYGSSFEDESF-VLKHVGPGVLSMANAG----PNTNGSQFFICTVKTPWLDNRHVVFGHV 200
IYG F+DE + LK+ G+LSMA+ G PNTNGSQFFI P L+ +V+FG +
Sbjct: 82 IYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKL 141
Query: 201 IDGMDVVRKLESVETSRTDYP 221
IDG + + LE+ + ++ P
Sbjct: 142 IDGFETLNTLENCPSDKSHKP 162
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 15/142 (10%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G + + L D+ P+ ++F LC + + FHR I++FMIQ
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 146 IY-----------GSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNR 193
+ G+ FEDE L H G GVLSMAN G ++N S+FFI L+N+
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 194 HVVFGHVIDGMDVVRKLESVET 215
H +FG V+ G+DV+R+ E +ET
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLET 154
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 85 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 144
AG I + L+ PK NF LC + Y Y FHR++ F++Q
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLCL--EAY-YDNTIFHRVVPGFIVQGGDPTGTGSGGE- 88
Query: 145 SIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-D 202
SIYG+ F+DE L+ G+++MANAG + NGSQFF + L+N+H +FG V D
Sbjct: 89 SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGD 148
Query: 203 GMDVVRKLESVETSRTDYPKVPCRI 227
+ + +L V+ + P P +I
Sbjct: 149 TVYNMLRLSEVDIDDDERPHNPHKI 173
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 71/174 (40%), Gaps = 46/174 (26%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G I + LF D P+TA NF K Y G FHR+I FMIQ
Sbjct: 9 GTITLKLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFMIQ-------------- 51
Query: 146 IYGSSFEDESFVLKHVGPGVLSMANAG---------------PNTNGSQFFICTVKTPWL 190
G FE K + + AN G P++ +QFFI +L
Sbjct: 52 --GGGFE-PGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFL 108
Query: 191 DNR--------HVVFGHVIDGMDVVRKLESVET-SRTDYPKVPCR--IINSGEL 233
D+ + VFG V++G DVV +++SV T SR + VP II E+
Sbjct: 109 DHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVIIEKAEI 162
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 19/150 (12%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G IV+ F D P+T +NF C +G+ Y FHR+I FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQKATK 65
Query: 146 IYGSSFEDESFVLKHVGPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR--------HVV 196
++E+ G L+MA P++ +QFFI V +L+ + V
Sbjct: 66 ---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCV 122
Query: 197 FGHVIDGMDVVRKLESVETSRT----DYPK 222
F V+DGMDVV K++ V T R+ D PK
Sbjct: 123 FAEVVDGMDVVDKIKGVATGRSGMHQDVPK 152
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 19/150 (12%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G IV+ F D P+T +NF C +G+ Y FHR+I FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQKATK 65
Query: 146 IYGSSFEDESFVLKHVGPGVLSMANA-GPNTNGSQFFICTVKTPWLDNR--------HVV 196
++E+ G L+MA P++ +QFFI V +L+ + V
Sbjct: 66 ---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCV 122
Query: 197 FGHVIDGMDVVRKLESVETSRT----DYPK 222
F V+DGMD V K++ V T R+ D PK
Sbjct: 123 FAEVVDGMDEVDKIKGVATGRSGMHQDVPK 152
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 20/156 (12%)
Query: 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 145
G + + L+ P NF LC +GY Y FHR++KDF++Q +
Sbjct: 31 GDLDVELWARECPLACRNFVQLCL--EGY-YVNTIFHRVVKDFIVQGGDPTGTGRGGADT 87
Query: 146 IY-GSSFEDESF-VLKHVGPGVLSMANAGPN--------------TNGSQFFICTVKTPW 189
+ G F+ E+ LK G++ +AN G + TNG+QFFI +
Sbjct: 88 TFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADV 147
Query: 190 LDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVP 224
L+N + +FG V + + K +E + D P P
Sbjct: 148 LNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTP 183
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 68/174 (39%), Gaps = 44/174 (25%)
Query: 85 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 144
AG I + L P + +NF G+ Y +FHR+I FMIQ
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVN--SGF-YNNTTFHRVIPGFMIQ------------- 56
Query: 145 SIYGSSFEDESFVLKHVGPGVLSMANAG-PNTNG--------------SQFFICTVKTPW 189
G F E K P + + A+ G NT G SQFFI +
Sbjct: 57 ---GGGFT-EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAF 112
Query: 190 LDNR-----HVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIINSGELP 234
LD+ + VFG V+ GMDV K+ V T + P P I+++ LP
Sbjct: 113 LDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 166
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 68/174 (39%), Gaps = 44/174 (25%)
Query: 85 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 144
AG I + L P + +NF G+ Y +FHR+I FMIQ
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVN--SGF-YNNTTFHRVIPGFMIQ------------- 56
Query: 145 SIYGSSFEDESFVLKHVGPGVLSMANAG-PNTNG--------------SQFFICTVKTPW 189
G F E K P + + A+ G NT G SQFFI +
Sbjct: 57 ---GGGFT-EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAF 112
Query: 190 LDNR-----HVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIINSGELP 234
LD+ + VFG V+ GMDV K+ V T + P P I+++ LP
Sbjct: 113 LDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 43/141 (30%)
Query: 98 PKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFV 157
PKT ENF L +KG+ Y G FHR+I FMIQ G FE
Sbjct: 25 PKTVENF--LNYVKKGH-YDGTIFHRVINGFMIQ----------------GGGFE-PGLK 64
Query: 158 LKHVGPGVLSMANAG---------------PNTNGSQFFICTVKTPWLDNR--------H 194
K + + AN G P++ +QFFI +L++ +
Sbjct: 65 QKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGY 124
Query: 195 VVFGHVIDGMDVVRKLESVET 215
VFG V++G D+V K+++V+T
Sbjct: 125 AVFGKVVEGQDIVDKIKAVKT 145
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 40/176 (22%)
Query: 73 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE------KGYG----------- 115
+V+ D+ + + GR+ + LF D P ENF L G+ G G
Sbjct: 16 RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75
Query: 116 YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSS-----FEDESFVLKHVGPGVLSMAN 170
Y+GC FH ++ + I ++Y F D + H G+LS+
Sbjct: 76 YEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLSLV- 132
Query: 171 AGPNTN--GSQFFICTVKTPW-----------LDNRHVVFGHVIDGMDVVRKLESV 213
P T+ G++++ T LD VV G V G+DV+ K+ S+
Sbjct: 133 --PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSM 186
>pdb|2V5I|A Chain A, Structure Of The Receptor-binding Protein Of Bacteriophage
Det7: A Podoviral Tailspike In A Myovirus
Length = 559
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 159 KHVGPGVLSMANAGPNTNGSQFFICTVKTPWL------DNRHVVFGHVIDGMDVVRKLES 212
K +G G L N GP + +Q F+ + TPW+ D + + ++ K+E
Sbjct: 68 KFIGDGALIFNNMGPGSVINQPFMESKTTPWVIFPWDADGKWITDAALVAATLKQSKIEG 127
Query: 213 VETSRTDYPKVP 224
+ D+ K P
Sbjct: 128 YQPGVNDWVKFP 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,616,664
Number of Sequences: 62578
Number of extensions: 254853
Number of successful extensions: 534
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 79
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)