Query 026524
Match_columns 237
No_of_seqs 233 out of 1346
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 7E-61 1.5E-65 430.8 14.8 166 71-236 8-181 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 5.1E-60 1.1E-64 394.4 17.7 172 65-236 33-205 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 8.1E-53 1.8E-57 333.0 13.0 164 70-233 9-177 (177)
4 cd01926 cyclophilin_ABH_like c 100.0 1.9E-49 4.2E-54 329.0 19.9 159 72-231 1-164 (164)
5 PLN03149 peptidyl-prolyl isome 100.0 8.6E-49 1.9E-53 331.4 19.6 163 71-233 18-186 (186)
6 PTZ00221 cyclophilin; Provisio 100.0 2.7E-48 5.9E-53 339.9 20.6 163 69-235 50-221 (249)
7 KOG0111 Cyclophilin-type pepti 100.0 9.4E-50 2E-54 338.3 10.2 164 70-234 135-298 (298)
8 PTZ00060 cyclophilin; Provisio 100.0 5.3E-48 1.2E-52 325.8 20.4 162 71-234 15-183 (183)
9 KOG0881 Cyclophilin type pepti 100.0 3.9E-48 8.4E-53 303.2 9.2 153 72-233 10-163 (164)
10 COG0652 PpiB Peptidyl-prolyl c 100.0 5.9E-46 1.3E-50 305.2 16.4 147 81-233 4-157 (158)
11 cd01923 cyclophilin_RING cyclo 100.0 4.7E-45 1E-49 301.4 19.4 149 83-235 6-155 (159)
12 cd01927 cyclophilin_WD40 cyclo 100.0 4.2E-45 9.1E-50 298.5 17.7 143 83-229 4-147 (148)
13 cd01928 Cyclophilin_PPIL3_like 100.0 5.6E-45 1.2E-49 299.3 17.9 145 83-231 7-152 (153)
14 cd01921 cyclophilin_RRM cyclop 100.0 2.5E-44 5.4E-49 299.0 18.6 149 83-235 4-161 (166)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 2.7E-44 5.8E-49 293.1 17.1 142 83-229 4-146 (146)
16 KOG0883 Cyclophilin type, U bo 100.0 7.4E-45 1.6E-49 328.4 12.7 159 68-233 272-431 (518)
17 KOG0882 Cyclophilin-related pe 100.0 1.9E-43 4.1E-48 324.3 11.6 157 72-232 400-557 (558)
18 cd01925 cyclophilin_CeCYP16-li 100.0 5.6E-42 1.2E-46 286.2 19.3 148 83-234 12-161 (171)
19 PRK10903 peptidyl-prolyl cis-t 100.0 1E-41 2.3E-46 289.0 19.0 146 83-234 35-190 (190)
20 KOG0865 Cyclophilin type pepti 100.0 1.6E-42 3.6E-47 286.9 9.9 163 70-233 2-167 (167)
21 PRK10791 peptidyl-prolyl cis-t 100.0 5.2E-41 1.1E-45 278.7 17.7 145 83-233 6-163 (164)
22 KOG0884 Similar to cyclophilin 100.0 2E-41 4.4E-46 264.0 11.3 146 83-232 7-154 (161)
23 cd01920 cyclophilin_EcCYP_like 100.0 1.5E-40 3.3E-45 273.5 16.9 141 83-229 4-154 (155)
24 PF00160 Pro_isomerase: Cyclop 100.0 2.7E-39 5.9E-44 264.2 17.3 150 75-232 1-155 (155)
25 cd00317 cyclophilin cyclophili 100.0 7.9E-39 1.7E-43 259.2 17.4 142 83-229 4-146 (146)
26 cd01924 cyclophilin_TLP40_like 100.0 6.8E-37 1.5E-41 256.7 16.3 129 82-213 3-165 (176)
27 KOG0885 Peptidyl-prolyl cis-tr 100.0 6.5E-37 1.4E-41 275.7 12.8 157 68-233 9-167 (439)
28 KOG0415 Predicted peptidyl pro 100.0 8.2E-36 1.8E-40 267.3 12.6 150 82-235 6-164 (479)
29 KOG0882 Cyclophilin-related pe 97.5 0.00011 2.4E-09 69.3 4.5 144 85-232 111-261 (558)
30 COG4070 Predicted peptidyl-pro 96.2 0.0097 2.1E-07 55.6 6.1 103 86-212 203-305 (512)
31 TIGR03268 methan_mark_3 putati 96.2 0.02 4.4E-07 54.9 8.4 103 87-213 202-304 (503)
32 PRK00969 hypothetical protein; 96.2 0.018 3.9E-07 55.4 7.8 99 87-212 205-306 (508)
33 TIGR03268 methan_mark_3 putati 96.2 0.054 1.2E-06 52.1 10.9 115 86-213 375-496 (503)
34 PRK00969 hypothetical protein; 95.5 0.14 3.1E-06 49.4 10.8 114 86-213 378-498 (508)
35 COG4070 Predicted peptidyl-pro 94.3 0.19 4.1E-06 47.3 7.7 115 87-213 377-499 (512)
36 PF12903 DUF3830: Protein of u 93.3 0.57 1.2E-05 38.4 8.0 107 86-212 8-130 (147)
37 PF04126 Cyclophil_like: Cyclo 31.2 49 0.0011 25.8 2.8 47 161-212 60-113 (120)
38 PF06138 Chordopox_E11: Chordo 25.3 3.6E+02 0.0078 21.6 7.1 43 83-127 10-61 (130)
39 COG0219 CspR Predicted rRNA me 23.7 1E+02 0.0022 25.6 3.4 33 88-126 3-35 (155)
40 PF12396 DUF3659: Protein of u 21.4 1.1E+02 0.0024 21.4 2.8 28 190-219 16-43 (64)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-61 Score=430.82 Aligned_cols=166 Identities=66% Similarity=1.076 Sum_probs=162.3
Q ss_pred cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCc--------ccCCCEEEEEEcCcEEEeCCCCCCCCCC
Q 026524 71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY--------GYKGCSFHRIIKDFMIQGGDFTEGDGTG 142 (237)
Q Consensus 71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~--------~Y~g~~f~Rii~~~~iqgGd~~~~~g~g 142 (237)
+++|||||+|++++.||||||||.|+||+||+||+.||+|++|. +|+|+.||||+++|||||||++.++|+|
T Consensus 8 ~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtG 87 (372)
T KOG0546|consen 8 NPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTG 87 (372)
T ss_pred CceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCC
Confidence 78999999999999999999999999999999999999999974 6999999999999999999999999999
Q ss_pred cccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCC
Q 026524 143 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPK 222 (237)
Q Consensus 143 g~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~ 222 (237)
|+||||..|+||+|.++|+++++|||||.||||||||||||+.++|||||+|+|||+||.|++||+.|+.+.++..++|.
T Consensus 88 GeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~ 167 (372)
T KOG0546|consen 88 GESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPL 167 (372)
T ss_pred cccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeeEEeeCC
Q 026524 223 VPCRIINSGELPLD 236 (237)
Q Consensus 223 ~~v~I~~cG~l~~~ 236 (237)
.+|+|.+||+|...
T Consensus 168 ~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 168 ADVVISDCGELVKK 181 (372)
T ss_pred cceEeccccccccc
Confidence 99999999999754
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-60 Score=394.41 Aligned_cols=172 Identities=70% Similarity=1.189 Sum_probs=168.3
Q ss_pred hccccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhc-cCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCc
Q 026524 65 ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCT-GEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG 143 (237)
Q Consensus 65 ~~~~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~-g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg 143 (237)
+.+++++++|||||+++++..|||+|+||++.+|+||+||.+||+ ++++++|.|++||||+|||||||||++.++|+|+
T Consensus 33 ~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg 112 (217)
T KOG0880|consen 33 EPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGG 112 (217)
T ss_pred CCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCC
Confidence 467889999999999999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred ccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCC
Q 026524 144 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKV 223 (237)
Q Consensus 144 ~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~ 223 (237)
.++||+.|+|||+.++|+++|.|||||.|||+||||||||+..++|||++|+|||||++|||+|.+|+.++||++++|.+
T Consensus 113 ~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e 192 (217)
T KOG0880|consen 113 KSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLE 192 (217)
T ss_pred eEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeeEEeeCC
Q 026524 224 PCRIINSGELPLD 236 (237)
Q Consensus 224 ~v~I~~cG~l~~~ 236 (237)
+|+|.+||+|+.+
T Consensus 193 ~v~I~~~g~l~~~ 205 (217)
T KOG0880|consen 193 DVVIANCGELPVE 205 (217)
T ss_pred cEEEeecCccccc
Confidence 9999999999764
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-53 Score=333.03 Aligned_cols=164 Identities=61% Similarity=1.068 Sum_probs=159.0
Q ss_pred ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCC-----CcccCCCEEEEEEcCcEEEeCCCCCCCCCCcc
Q 026524 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK-----GYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGI 144 (237)
Q Consensus 70 ~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~-----g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~ 144 (237)
.++.|||||++++.++|||.||||.|.+|+|++||++.|+|+. ..+|+++.|||++++|||||||+..++|+|-.
T Consensus 9 ~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~ 88 (177)
T KOG0879|consen 9 NNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVA 88 (177)
T ss_pred CCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEE
Confidence 3889999999999999999999999999999999999999963 24799999999999999999999999999999
Q ss_pred cccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCC
Q 026524 145 SIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVP 224 (237)
Q Consensus 145 s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~ 224 (237)
++|+.+|+||++.++|..+|+|||||+|+++||.|||||..++.|||++|+|||+|++|+.++++||.+|+.+|++|+-+
T Consensus 89 sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~ 168 (177)
T KOG0879|consen 89 SIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLP 168 (177)
T ss_pred EEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeEEe
Q 026524 225 CRIINSGEL 233 (237)
Q Consensus 225 v~I~~cG~l 233 (237)
|.|..||++
T Consensus 169 v~i~qCGem 177 (177)
T KOG0879|consen 169 VVIVQCGEM 177 (177)
T ss_pred EEEeecccC
Confidence 999999974
No 4
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.9e-49 Score=328.97 Aligned_cols=159 Identities=73% Similarity=1.257 Sum_probs=151.4
Q ss_pred ceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCC-----cccCCCEEEEEEcCcEEEeCCCCCCCCCCcccc
Q 026524 72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG-----YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISI 146 (237)
Q Consensus 72 ~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g-----~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~ 146 (237)
++|||||++++++.|+|+||||.+.||++|+||++||+++++ +.|+++.||||+|+|+||+||+..+++.++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~ 80 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSI 80 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcc
Confidence 579999999999999999999999999999999999987666 239999999999999999999887888889999
Q ss_pred cCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 026524 147 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR 226 (237)
Q Consensus 147 ~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~ 226 (237)
++..+++|...+.|.++|+|+||+.++++++|||||+|.++++||++|+|||||++|||||++|++++++ +++|.++|+
T Consensus 81 ~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~ 159 (164)
T cd01926 81 YGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVV 159 (164)
T ss_pred cCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeE
Confidence 9999999988899999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEeeE
Q 026524 227 IINSG 231 (237)
Q Consensus 227 I~~cG 231 (237)
|.+||
T Consensus 160 I~~cG 164 (164)
T cd01926 160 IADCG 164 (164)
T ss_pred EEECC
Confidence 99998
No 5
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=8.6e-49 Score=331.35 Aligned_cols=163 Identities=67% Similarity=1.188 Sum_probs=153.8
Q ss_pred cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCC---C--cccCCCEEEEEEcCcEEEeCCCCCCCCCCccc
Q 026524 71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK---G--YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 145 (237)
Q Consensus 71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~---g--~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s 145 (237)
++++||||++++++.|||+||||.+.||+||+||++||+|+. + .+|+++.||||+|+|+|||||+..+++.++.+
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~ 97 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVS 97 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCccc
Confidence 568999999999999999999999999999999999998643 2 24999999999999999999988788999999
Q ss_pred ccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCCC
Q 026524 146 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVP 224 (237)
Q Consensus 146 ~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~Vi-eG~dvl~~I~~~~t~~~~~P~~~ 224 (237)
+|+..|++|.+.+.|.++|+|+|++.++++++|||||++.++|+||++|+|||+|+ +|||||++|++++++++++|.++
T Consensus 98 ~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~ 177 (186)
T PLN03149 98 IYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLA 177 (186)
T ss_pred ccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCC
Confidence 99999999988889999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred eEEEeeEEe
Q 026524 225 CRIINSGEL 233 (237)
Q Consensus 225 v~I~~cG~l 233 (237)
|+|.+||++
T Consensus 178 i~I~~cG~~ 186 (186)
T PLN03149 178 CVISECGEM 186 (186)
T ss_pred eEEEeCEeC
Confidence 999999985
No 6
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.7e-48 Score=339.94 Aligned_cols=163 Identities=36% Similarity=0.592 Sum_probs=150.9
Q ss_pred cccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCc--------ccCCCEEEEEEcC-cEEEeCCCCCCC
Q 026524 69 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY--------GYKGCSFHRIIKD-FMIQGGDFTEGD 139 (237)
Q Consensus 69 ~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~--------~Y~g~~f~Rii~~-~~iqgGd~~~~~ 139 (237)
..+++||||+++++++.|+|+||||.+.||+||+||++||+|+++. +|+|+.||||+++ ++||+||+..
T Consensus 50 ~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~-- 127 (249)
T PTZ00221 50 QNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS-- 127 (249)
T ss_pred CCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC--
Confidence 3478999999999999999999999999999999999999876542 3999999999985 8999999863
Q ss_pred CCCcccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCC
Q 026524 140 GTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTD 219 (237)
Q Consensus 140 g~gg~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~ 219 (237)
++.+++|..|++|++.++|+++|+|+|++.|+++|||||||||.++|+||++|+|||+|++|||||++|++++++.++
T Consensus 128 --~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~g 205 (249)
T PTZ00221 128 --FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVG 205 (249)
T ss_pred --CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCC
Confidence 234677899999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCCCeEEEeeEEeeC
Q 026524 220 YPKVPCRIINSGELPL 235 (237)
Q Consensus 220 ~P~~~v~I~~cG~l~~ 235 (237)
+|.++|+|.+||+|..
T Consensus 206 rP~~~V~I~~Cgvl~~ 221 (249)
T PTZ00221 206 RPLLPVTVSFCGALTG 221 (249)
T ss_pred CCCCCeEEEECeEecC
Confidence 9999999999999964
No 7
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-50 Score=338.28 Aligned_cols=164 Identities=62% Similarity=1.079 Sum_probs=160.0
Q ss_pred ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCC
Q 026524 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGS 149 (237)
Q Consensus 70 ~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~ 149 (237)
-++.||+||.|+....|||+++|..+..|+|++||..||+|++||+|+|+.||||+|.||+||||++.++|+||.+|||.
T Consensus 135 ~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygk 214 (298)
T KOG0111|consen 135 ENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGK 214 (298)
T ss_pred hChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524 150 SFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 229 (237)
Q Consensus 150 ~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~ 229 (237)
.|.||+|.++|..+|+|+|||+|+|+|||||||++..+.|||++|+|||.|++||+||+++++..+. .++|.+.|+|.+
T Consensus 215 kfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsk-sgkp~qkv~i~~ 293 (298)
T KOG0111|consen 215 KFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSK-SGKPQQKVKIVE 293 (298)
T ss_pred cccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCC-CCCcceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999665 899999999999
Q ss_pred eEEee
Q 026524 230 SGELP 234 (237)
Q Consensus 230 cG~l~ 234 (237)
||+++
T Consensus 294 cge~~ 298 (298)
T KOG0111|consen 294 CGEIE 298 (298)
T ss_pred ccccC
Confidence 99874
No 8
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=5.3e-48 Score=325.78 Aligned_cols=162 Identities=64% Similarity=1.077 Sum_probs=152.8
Q ss_pred cceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccC-------CCcccCCCEEEEEEcCcEEEeCCCCCCCCCCc
Q 026524 71 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-------KGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG 143 (237)
Q Consensus 71 ~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~-------~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg 143 (237)
+++||||+++++++.|+|+||||.+.||++|+||++||+|+ .++ |+|+.||||+|+++||+||+..+++.++
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g 93 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGG 93 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence 67899999999999999999999999999999999999753 446 9999999999999999999987788899
Q ss_pred ccccCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCC
Q 026524 144 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKV 223 (237)
Q Consensus 144 ~s~~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~ 223 (237)
.++++..+++|...++|..+|+|+|++.++++++|||||++.++++||++|+|||+|++|||||++|++.++. +++|.+
T Consensus 94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~P~~ 172 (183)
T PTZ00060 94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKK 172 (183)
T ss_pred CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCCCcC
Confidence 9999999999988899998999999999999999999999999999999999999999999999999999885 789999
Q ss_pred CeEEEeeEEee
Q 026524 224 PCRIINSGELP 234 (237)
Q Consensus 224 ~v~I~~cG~l~ 234 (237)
+|+|.+||+|.
T Consensus 173 ~v~I~~cg~~~ 183 (183)
T PTZ00060 173 PVVVTDCGELQ 183 (183)
T ss_pred CeEEEEeEEcC
Confidence 99999999984
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-48 Score=303.21 Aligned_cols=153 Identities=52% Similarity=0.912 Sum_probs=145.1
Q ss_pred ceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCC
Q 026524 72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSF 151 (237)
Q Consensus 72 ~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~ 151 (237)
+.|+++ |++|.|++|||-+.||+||+||.+|+ .+|| |+|..||||+++||||||||+ ++|.||.++||..|
T Consensus 10 ~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~kF 80 (164)
T KOG0881|consen 10 PNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDKF 80 (164)
T ss_pred CeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhheeecCCCC-CCCCCccccccchh
Confidence 466665 68899999999999999999999999 5999 999999999999999999998 89999999999999
Q ss_pred CCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEee
Q 026524 152 EDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 230 (237)
Q Consensus 152 ~de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~c 230 (237)
+||-. .++|...|.|+|||.|||+|||||||||.+.+|||++|++||||..||+|++++..+.|+.++||..+++|.+.
T Consensus 81 ~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika 160 (164)
T KOG0881|consen 81 EDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKA 160 (164)
T ss_pred hhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEee
Confidence 99976 89999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred EEe
Q 026524 231 GEL 233 (237)
Q Consensus 231 G~l 233 (237)
-..
T Consensus 161 ~~~ 163 (164)
T KOG0881|consen 161 YPS 163 (164)
T ss_pred ecC
Confidence 543
No 10
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-46 Score=305.15 Aligned_cols=147 Identities=48% Similarity=0.826 Sum_probs=134.3
Q ss_pred CCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccC
Q 026524 81 GGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKH 160 (237)
Q Consensus 81 ~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h 160 (237)
..|+.|+|+||||++.||+||+||++|| +.++ |+|+.||||+++|||||||++.+.+.++++ ++|++|++...|
T Consensus 4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~~~~~ 77 (158)
T COG0652 4 LETNKGDITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENFALNG 77 (158)
T ss_pred eeccCCCEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCceeecCCCCCCCCCCCCC---CCCccccccccc
Confidence 4578999999999999999999999999 4888 999999999999999999999777888874 889999988777
Q ss_pred CC--CeEEEEeeCC-CCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEEeeEEe
Q 026524 161 VG--PGVLSMANAG-PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIINSGEL 233 (237)
Q Consensus 161 ~~--~G~lsma~~g-~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~----~~~P~~~v~I~~cG~l 233 (237)
.+ +|+|||||.+ ||+|+|||||++.++||||++|+|||+|++|||+|++|++.++.. .+.|..+++|.+..++
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeee
Confidence 77 9999999999 999999999999999999999999999999999999999988775 3567788888887765
No 11
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=4.7e-45 Score=301.44 Aligned_cols=149 Identities=49% Similarity=0.804 Sum_probs=140.9
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524 83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV 161 (237)
Q Consensus 83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~ 161 (237)
|+.|+|+||||.+.||++|+||++||+ .|+ |+|+.||||+|+++||+||+. +++.++.++++..+++|.. .++|+
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~~h~ 81 (159)
T cd01923 6 TNKGDLNLELHCDKAPKACENFIKLCK--KGY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNLSHD 81 (159)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHh--cCc-cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCcCcC
Confidence 589999999999999999999999994 788 999999999999999999986 6788899999999999864 67898
Q ss_pred CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEeeC
Q 026524 162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 235 (237)
Q Consensus 162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~l~~ 235 (237)
++|+|+|++.++++++|||||++.++|+||++|+|||||++|||+|++|++++++++++|+++|+|.+|+++.+
T Consensus 82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~d 155 (159)
T cd01923 82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVD 155 (159)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864
No 12
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=4.2e-45 Score=298.46 Aligned_cols=143 Identities=59% Similarity=0.952 Sum_probs=135.7
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524 83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV 161 (237)
Q Consensus 83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~ 161 (237)
|+.|+|+||||.+.||++|+||++||+ .++ |+++.||||+|+|++|+||+. +++.++.++|+..|++|.. .++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~h~ 79 (148)
T cd01927 4 TTKGDIHIRLFPEEAPKTVENFTTHAR--NGY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSLKHD 79 (148)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHhh--cCC-cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccccccccCcC
Confidence 689999999999999999999999995 778 999999999999999999986 6788888999999999976 78898
Q ss_pred CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524 162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 229 (237)
Q Consensus 162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~ 229 (237)
++|+|+||+.++++++|||||++.++|+||++|+|||||++|||||++|++++++++++|.++|+|.+
T Consensus 80 ~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 80 RPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred CCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999985
No 13
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=5.6e-45 Score=299.27 Aligned_cols=145 Identities=52% Similarity=0.843 Sum_probs=137.2
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524 83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV 161 (237)
Q Consensus 83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~ 161 (237)
|+.|+|+||||++.||++|+||++||+ .++ |+|+.|||++|+|++||||+. +++.++.++++..|++|.. .++|+
T Consensus 7 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~~~ 82 (153)
T cd01928 7 TNLGDIKIELFCDDCPKACENFLALCA--SGY-YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETLKHD 82 (153)
T ss_pred EccccEEEEEcCCCCcHHHHHHHHHHh--cCc-cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCCCcC
Confidence 689999999999999999999999995 678 999999999999999999986 6788888999999999976 57888
Q ss_pred CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeE
Q 026524 162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSG 231 (237)
Q Consensus 162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG 231 (237)
.+|+|+||+.++++++|||||++.++|+||++|+|||+|++|||||++|++++++++++|..+|+|.+|.
T Consensus 83 ~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 83 SRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred CCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
No 14
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2.5e-44 Score=298.97 Aligned_cols=149 Identities=42% Similarity=0.673 Sum_probs=136.1
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccC-------CCCCCCc
Q 026524 83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG-------SSFEDES 155 (237)
Q Consensus 83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g-------~~~~de~ 155 (237)
|+.|+|+||||.+.||+||+||++||+ .++ |+|+.||||+++|+|||||+. +++.++.++++ ..+++|.
T Consensus 4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~--~~~-Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~e~ 79 (166)
T cd01921 4 TTLGDLVIDLFTDECPLACLNFLKLCK--LKY-YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFEPEI 79 (166)
T ss_pred eccCCEEEEEcCCCCCHHHHHHHHHHh--cCC-cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccCccc
Confidence 689999999999999999999999995 778 999999999999999999986 66777777664 3466665
Q ss_pred c-cccCCCCeEEEEeeCCCCCCCceeEEEecC-CCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEe
Q 026524 156 F-VLKHVGPGVLSMANAGPNTNGSQFFICTVK-TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGEL 233 (237)
Q Consensus 156 ~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~-~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~l 233 (237)
. .++|+.+|+|+||+.++++++|||||++.+ +++||++|+|||+|++|||||++|++++++++++|.++|+|.+|+++
T Consensus 80 ~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~ 159 (166)
T cd01921 80 LPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHIL 159 (166)
T ss_pred CCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEE
Confidence 4 678989999999999999999999999985 89999999999999999999999999999999999999999999998
Q ss_pred eC
Q 026524 234 PL 235 (237)
Q Consensus 234 ~~ 235 (237)
.+
T Consensus 160 ~~ 161 (166)
T cd01921 160 DD 161 (166)
T ss_pred CC
Confidence 64
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=2.7e-44 Score=293.12 Aligned_cols=142 Identities=56% Similarity=0.959 Sum_probs=133.6
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCc-ccccCC
Q 026524 83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLKHV 161 (237)
Q Consensus 83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~-~~~~h~ 161 (237)
|+.|+|+||||.+.||++|+||++||+ .++ |+++.|||++|+|++||||+. +++.++.++++..|++|. ..++|.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~~h~ 79 (146)
T cd01922 4 TTMGEITLELYWNHAPKTCKNFYELAK--RGY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPELKHT 79 (146)
T ss_pred eccccEEEEEcCCCCcHHHHHHHHHHh--cCC-cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCcCCC
Confidence 689999999999999999999999995 778 999999999999999999986 677888889999999985 478898
Q ss_pred CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524 162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 229 (237)
Q Consensus 162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~ 229 (237)
++|+|+|++.++++++|||||++.++|+||++|+|||+|++|||||++|++++++ +++|.++|+|.+
T Consensus 80 ~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 80 GAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 9999999999999999999999999999999999999999999999999999998 899999999963
No 16
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-45 Score=328.42 Aligned_cols=159 Identities=47% Similarity=0.787 Sum_probs=151.6
Q ss_pred ccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCccccc
Q 026524 68 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY 147 (237)
Q Consensus 68 ~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~ 147 (237)
..+..+-|..+.. +.|.|.|||++|.+|++|+||+.|| ++|| |+|+.|||.|.|||||||||+ |+|.||+|||
T Consensus 272 ~rvKkkgyvrl~T---n~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt~FHRsIrnFmiQGGDPT-GTG~GGeSiW 344 (518)
T KOG0883|consen 272 TRVKKKGYVRLVT---NHGPLNLELHCDYAPRACENFITLC--KNGY-YNNTIFHRSIRNFMIQGGDPT-GTGRGGESIW 344 (518)
T ss_pred ccccccceEEEec---cCCceeeEeecCcchHHHHHHHHHH--hccc-ccchHHHHHHHHHeeeCCCCC-CCCCCCcccc
Confidence 4557788888765 7899999999999999999999999 6999 999999999999999999998 8999999999
Q ss_pred CCCCCCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 026524 148 GSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR 226 (237)
Q Consensus 148 g~~~~de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~ 226 (237)
|.+|.||.. .+.|..||+|||||+|||+|||||||+..++.+||++|++||+||.|+|+|.+|++++++++++|..+|+
T Consensus 345 gKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~ 424 (518)
T KOG0883|consen 345 GKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIK 424 (518)
T ss_pred CCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceE
Confidence 999999986 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeEEe
Q 026524 227 IINSGEL 233 (237)
Q Consensus 227 I~~cG~l 233 (237)
|.+.-|.
T Consensus 425 i~~~~VF 431 (518)
T KOG0883|consen 425 IEDAIVF 431 (518)
T ss_pred EeeeEEe
Confidence 9998775
No 17
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-43 Score=324.33 Aligned_cols=157 Identities=53% Similarity=0.831 Sum_probs=147.3
Q ss_pred ceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCC
Q 026524 72 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSF 151 (237)
Q Consensus 72 ~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~ 151 (237)
+++.=+-+|--|+.|+|.|.||++.||+||+||...| ..|| |+|..||||+++||||+|||. |+|+||++|||..|
T Consensus 400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~df 475 (558)
T KOG0882|consen 400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDF 475 (558)
T ss_pred ceecccceEEEecccceEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhheeecCCCC-CCCCCCcccccccc
Confidence 3444455566789999999999999999999999999 5999 999999999999999999998 89999999999999
Q ss_pred CCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEee
Q 026524 152 EDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINS 230 (237)
Q Consensus 152 ~de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~c 230 (237)
+||.. .+.|+++-+|||||.|||+||||||||+.++||||++|+|||||+.||||+++|+++.|++++||.++|.|.+-
T Consensus 476 edefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iini 555 (558)
T KOG0882|consen 476 EDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINI 555 (558)
T ss_pred hhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEE
Confidence 99987 79999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred EE
Q 026524 231 GE 232 (237)
Q Consensus 231 G~ 232 (237)
-+
T Consensus 556 sv 557 (558)
T KOG0882|consen 556 SV 557 (558)
T ss_pred ec
Confidence 43
No 18
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=5.6e-42 Score=286.20 Aligned_cols=148 Identities=44% Similarity=0.733 Sum_probs=138.7
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524 83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV 161 (237)
Q Consensus 83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~ 161 (237)
|+.|+|+||||.+.+|+||+||++||+ +++ |+|+.|||++|+|+|||||+. +++.++.++|+..|++|.. .+.|+
T Consensus 12 Ts~G~i~ieL~~~~~P~t~~nF~~L~~--~~~-Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~~~~~~~~ 87 (171)
T cd01925 12 TTAGDIDIELWSKEAPKACRNFIQLCL--EGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEFHSRLRFN 87 (171)
T ss_pred EccccEEEEEeCCCChHHHHHHHHHHh--cCC-CCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCcccccCcCCC
Confidence 588999999999999999999999995 778 999999999999999999986 6788889999999999876 57788
Q ss_pred CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCCCeEEEeeEEee
Q 026524 162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRIINSGELP 234 (237)
Q Consensus 162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~Vi-eG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~l~ 234 (237)
++|+|+||+.++++++|||||++.++++||++|+|||+|+ +++++|++|++++++++++|.++|+|.+|+++.
T Consensus 88 ~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~ 161 (171)
T cd01925 88 RRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLE 161 (171)
T ss_pred CCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEc
Confidence 9999999999999999999999999999999999999999 468899999999999999999999999999975
No 19
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1e-41 Score=289.01 Aligned_cols=146 Identities=34% Similarity=0.559 Sum_probs=129.0
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCC
Q 026524 83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 162 (237)
Q Consensus 83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~ 162 (237)
|+.|+|+||||++.||+||+||++|| +++| |+|+.|||++|+|+|||||+....+. ..++.++.+|.....|+.
T Consensus 35 T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~~---~~~~~~~~~e~~~~l~~~ 108 (190)
T PRK10903 35 TSAGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQQ---KKPNPPIKNEADNGLRNT 108 (190)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCceEEeCCcCCCCCC---CCCCCcccCcccccCcCC
Confidence 58899999999999999999999999 4888 99999999999999999997643221 224667888865555668
Q ss_pred CeEEEEeeCC-CCCCCceeEEEecCCCCCCC-----CCeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEEeeEE
Q 026524 163 PGVLSMANAG-PNTNGSQFFICTVKTPWLDN-----RHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIINSGE 232 (237)
Q Consensus 163 ~G~lsma~~g-~~s~gSqFfItl~~~~~ld~-----~~~vFG~VieG~dvl~~I~~~~t~~----~~~P~~~v~I~~cG~ 232 (237)
+|+|+||+.+ +++++|||||++.++++||+ +|+|||+|++|||||++|+++++++ +++|.++|+|.+|++
T Consensus 109 ~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v 188 (190)
T PRK10903 109 RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKV 188 (190)
T ss_pred CcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEE
Confidence 9999999965 99999999999999999984 8999999999999999999999976 579999999999998
Q ss_pred ee
Q 026524 233 LP 234 (237)
Q Consensus 233 l~ 234 (237)
++
T Consensus 189 ~~ 190 (190)
T PRK10903 189 LP 190 (190)
T ss_pred eC
Confidence 75
No 20
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-42 Score=286.89 Aligned_cols=163 Identities=65% Similarity=1.135 Sum_probs=156.1
Q ss_pred ccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEE---EEcCcEEEeCCCCCCCCCCcccc
Q 026524 70 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHR---IIKDFMIQGGDFTEGDGTGGISI 146 (237)
Q Consensus 70 ~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~R---ii~~~~iqgGd~~~~~g~gg~s~ 146 (237)
++++||||++++++++|+++++||.|..|+|++||..||+|+++++|+++.||| .+++||+||||++.++++++.++
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi 81 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI 81 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence 478999999999999999999999999999999999999999999999999999 34479999999999999999999
Q ss_pred cCCCCCCCcccccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeE
Q 026524 147 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCR 226 (237)
Q Consensus 147 ~g~~~~de~~~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~ 226 (237)
|++.|+||++.++|..+|+|+|||.||++|||||||++....|||++|+|||+|.+||+++++|+.. ..++++|..+|.
T Consensus 82 y~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~-gs~~gk~~~~i~ 160 (167)
T KOG0865|consen 82 YGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERF-GSRNGKTSKKIT 160 (167)
T ss_pred cccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhcc-CCcCCcccccEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 445999999999
Q ss_pred EEeeEEe
Q 026524 227 IINSGEL 233 (237)
Q Consensus 227 I~~cG~l 233 (237)
|.+||+|
T Consensus 161 i~dcg~l 167 (167)
T KOG0865|consen 161 IADCGQL 167 (167)
T ss_pred EecCCcC
Confidence 9999986
No 21
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=5.2e-41 Score=278.69 Aligned_cols=145 Identities=36% Similarity=0.585 Sum_probs=125.1
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCC
Q 026524 83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 162 (237)
Q Consensus 83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~ 162 (237)
|+.|+|+|+||.+.||+||+||++||+ .+| |+++.||||+|+|+|||||+..+.+.. .++.++++|.....++.
T Consensus 6 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~~---~~~~~~~~e~~~~~~~~ 79 (164)
T PRK10791 6 TNHGDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEANNGLKNT 79 (164)
T ss_pred EccccEEEEEeCCCCcHHHHHHHHHHh--cCC-cCCcEEEEEecCcEEEeCCcCCCCCcC---CCCCCcCCcccccccCC
Confidence 689999999999999999999999995 788 999999999999999999976443322 23566777754333447
Q ss_pred CeEEEEeeCC-CCCCCceeEEEecCCCCCC-------C-CCeEEEEEEcCHHHHHHhhcCCCCC----CCCCCCCeEEEe
Q 026524 163 PGVLSMANAG-PNTNGSQFFICTVKTPWLD-------N-RHVVFGHVIDGMDVVRKLESVETSR----TDYPKVPCRIIN 229 (237)
Q Consensus 163 ~G~lsma~~g-~~s~gSqFfItl~~~~~ld-------~-~~~vFG~VieG~dvl~~I~~~~t~~----~~~P~~~v~I~~ 229 (237)
+|+||||+.+ |++++|||||++.++++|| + +|+|||+|++|||||++|+++++++ +++|..+|+|.+
T Consensus 80 ~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~ 159 (164)
T PRK10791 80 RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIES 159 (164)
T ss_pred CcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEE
Confidence 9999999975 9999999999999988876 2 7999999999999999999999976 379999999999
Q ss_pred eEEe
Q 026524 230 SGEL 233 (237)
Q Consensus 230 cG~l 233 (237)
|.+.
T Consensus 160 ~~i~ 163 (164)
T PRK10791 160 VTVS 163 (164)
T ss_pred EEEe
Confidence 9775
No 22
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-41 Score=264.04 Aligned_cols=146 Identities=49% Similarity=0.768 Sum_probs=138.1
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcc-cccCC
Q 026524 83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKHV 161 (237)
Q Consensus 83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~-~~~h~ 161 (237)
|..|+|.||||.+.+|++|+||+.||. ..| |+++.|||-+|+|++|+||++ ..|.||.++||.+|+||.. .++|+
T Consensus 7 t~~gdikiev~~e~tpktce~~l~~~~--~~~-~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~lkh~ 82 (161)
T KOG0884|consen 7 TDVGDIKIEVFCERTPKTCENFLALCA--SDY-YNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYLKHN 82 (161)
T ss_pred eccCcEEEEEEecCChhHHHHHHHHhh--hhh-ccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHHhhc
Confidence 567999999999999999999999994 667 999999999999999999997 7899999999999999987 68999
Q ss_pred CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCC-CCCCCCeEEEeeEE
Q 026524 162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRT-DYPKVPCRIINSGE 232 (237)
Q Consensus 162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~-~~P~~~v~I~~cG~ 232 (237)
.||+|+|||.||++||||||||.+..|+||-+|++||+||+|+|+|++|+++++++. .||..++.|.+..+
T Consensus 83 ~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti 154 (161)
T KOG0884|consen 83 VRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154 (161)
T ss_pred cceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence 999999999999999999999999999999999999999999999999999999875 89999999988654
No 23
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.5e-40 Score=273.50 Aligned_cols=141 Identities=38% Similarity=0.530 Sum_probs=124.2
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCC
Q 026524 83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 162 (237)
Q Consensus 83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~ 162 (237)
|+.|+|+||||.+.||+||+||++||+ .++ |+++.||||+|+|+|||||+....+. ..++.++++|.....|+.
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~~--~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~ 77 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYVR--KGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNT 77 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHHh--cCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCC
Confidence 689999999999999999999999994 788 99999999999999999998754322 223567777766555678
Q ss_pred CeEEEEeeCC-CCCCCceeEEEecCCCCCCC-----CCeEEEEEEcCHHHHHHhhcCCCCCC----CCCCCCeEEEe
Q 026524 163 PGVLSMANAG-PNTNGSQFFICTVKTPWLDN-----RHVVFGHVIDGMDVVRKLESVETSRT----DYPKVPCRIIN 229 (237)
Q Consensus 163 ~G~lsma~~g-~~s~gSqFfItl~~~~~ld~-----~~~vFG~VieG~dvl~~I~~~~t~~~----~~P~~~v~I~~ 229 (237)
+|+||||+.+ +++++|||||++.++++||+ +|+|||+|++|||||++|++++++.+ ++|..+|+|.+
T Consensus 78 ~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~ 154 (155)
T cd01920 78 RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES 154 (155)
T ss_pred ceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence 9999999975 89999999999999999995 79999999999999999999999874 69999999976
No 24
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=2.7e-39 Score=264.20 Aligned_cols=150 Identities=51% Similarity=0.845 Sum_probs=131.5
Q ss_pred EEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCc-ccccCCCCCC
Q 026524 75 FFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG-ISIYGSSFED 153 (237)
Q Consensus 75 ~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg-~s~~g~~~~d 153 (237)
||||++++ .|+|+||||.+.||++|+||++||+ .++ |+|+.|||++|+++||+|++......+. ....+.++++
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~ 75 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCT--SGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPD 75 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHH--TTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSS
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhc--ccc-cCCceeecccccceeeeeeccCCCCcccccccCcccccc
Confidence 78998866 9999999999999999999999996 667 9999999999999999999875433111 1223446888
Q ss_pred Ccc--cccCCCCeEEEEeeCC--CCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524 154 ESF--VLKHVGPGVLSMANAG--PNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 229 (237)
Q Consensus 154 e~~--~~~h~~~G~lsma~~g--~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~ 229 (237)
|.. .+.| .+|+|+|++.+ +++++|||||+|.++++||++|+|||+|++||+||++|++++++. +|.++|+|.+
T Consensus 76 E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~ 152 (155)
T PF00160_consen 76 EFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISS 152 (155)
T ss_dssp SGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEE
T ss_pred ccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEE
Confidence 874 4556 89999999976 889999999999999999999999999999999999999999886 9999999999
Q ss_pred eEE
Q 026524 230 SGE 232 (237)
Q Consensus 230 cG~ 232 (237)
||+
T Consensus 153 cgv 155 (155)
T PF00160_consen 153 CGV 155 (155)
T ss_dssp EEE
T ss_pred eEC
Confidence 997
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=7.9e-39 Score=259.23 Aligned_cols=142 Identities=56% Similarity=0.888 Sum_probs=128.7
Q ss_pred eeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCccccc-CC
Q 026524 83 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLK-HV 161 (237)
Q Consensus 83 t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~-h~ 161 (237)
|+.|+|+||||.+.||++|+||++||+ .++ |+++.|||++|+++||+||+....+.+ +.++..+++|..... |.
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~~--~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~ 78 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLAR--GGF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHH 78 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHHh--cCC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcC
Confidence 577999999999999999999999995 666 999999999999999999987544332 355778888887655 78
Q ss_pred CCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEe
Q 026524 162 GPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIIN 229 (237)
Q Consensus 162 ~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~ 229 (237)
++|+|+|++.++++++|||||+|.+.++||++|+|||+|++|||+|++|++.+++++++|.++|+|.+
T Consensus 79 ~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 79 RRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999974
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=6.8e-37 Score=256.69 Aligned_cols=129 Identities=37% Similarity=0.593 Sum_probs=110.0
Q ss_pred CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCC--------------------C
Q 026524 82 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDG--------------------T 141 (237)
Q Consensus 82 ~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g--------------------~ 141 (237)
.|+.|+|+||||++.||+||+||++||+ .++ |+++.||||+++|||||||+...+. .
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~--~g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~ 79 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVE--RGF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEG 79 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHH--hCC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccC
Confidence 4789999999999999999999999994 888 9999999999999999999864310 1
Q ss_pred CcccccCCCCC-----CCcccccCCCCeEEEEeeCC--CCCCCceeEEEec-------CCCCCCCCCeEEEEEEcCHHHH
Q 026524 142 GGISIYGSSFE-----DESFVLKHVGPGVLSMANAG--PNTNGSQFFICTV-------KTPWLDNRHVVFGHVIDGMDVV 207 (237)
Q Consensus 142 gg~s~~g~~~~-----de~~~~~h~~~G~lsma~~g--~~s~gSqFfItl~-------~~~~ld~~~~vFG~VieG~dvl 207 (237)
.+.++++..++ +++....|+.+|+||||+.+ +++++|||||++. +.++||++|+|||+|++|||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl 159 (176)
T cd01924 80 QKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDIL 159 (176)
T ss_pred CCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHH
Confidence 12345555442 45556677789999999987 7999999999998 7899999999999999999999
Q ss_pred HHhhcC
Q 026524 208 RKLESV 213 (237)
Q Consensus 208 ~~I~~~ 213 (237)
++|+..
T Consensus 160 ~~I~~g 165 (176)
T cd01924 160 RELKVG 165 (176)
T ss_pred HhhcCC
Confidence 999754
No 27
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-37 Score=275.70 Aligned_cols=157 Identities=41% Similarity=0.704 Sum_probs=145.9
Q ss_pred ccccceEEEEEEECCeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCccccc
Q 026524 68 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIY 147 (237)
Q Consensus 68 ~~~~~~v~~di~~~~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~ 147 (237)
+..+-+|.+. |+.|+|-||||+..||++|.||++||. .|| |+|+.|||++|+|++|||||+ ++|+||.+||
T Consensus 9 P~ttgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOG--egy-y~nt~fhrlvp~f~~Qggdp~-~~gtGgesiy 79 (439)
T KOG0885|consen 9 PPTTGKVILK-----TTKGDIDIELWAKECPKACRNFIQLCL--EGY-YDNTEFHRLVPGFLVQGGDPT-GTGTGGESIY 79 (439)
T ss_pred CCccceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHH--hcc-ccCceeeeeccchhcccCCCC-CCCCCccccc
Confidence 3335566554 688999999999999999999999994 899 999999999999999999997 8999999999
Q ss_pred CCCCCCCcc-cccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEE-cCHHHHHHhhcCCCCCCCCCCCCe
Q 026524 148 GSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPC 225 (237)
Q Consensus 148 g~~~~de~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~Vi-eG~dvl~~I~~~~t~~~~~P~~~v 225 (237)
|.+|.+|.. .+.++++|+|+|||.+.+.|||||||||+++|+|+++|++||+|+ +-+-.+-+|..+.++.+.||..+-
T Consensus 80 g~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~ 159 (439)
T KOG0885|consen 80 GRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPP 159 (439)
T ss_pred cccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCcc
Confidence 999999987 788999999999999999999999999999999999999999999 468888999999999999999999
Q ss_pred EEEeeEEe
Q 026524 226 RIINSGEL 233 (237)
Q Consensus 226 ~I~~cG~l 233 (237)
+|.+|.++
T Consensus 160 kI~s~EV~ 167 (439)
T KOG0885|consen 160 KIKSVEVL 167 (439)
T ss_pred ceeeeEee
Confidence 99999987
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-36 Score=267.28 Aligned_cols=150 Identities=41% Similarity=0.650 Sum_probs=139.2
Q ss_pred CeeceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCC-------CCCC
Q 026524 82 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS-------FEDE 154 (237)
Q Consensus 82 ~t~~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~-------~~de 154 (237)
.|++|+|||+||.+.+|.+|.||++|| +..| |+.|.||-|..+|.+|.|||+ |+|.||.++|+.. |+.|
T Consensus 6 eTtlGDlvIDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 6 ETTLGDLVIDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred EeecccEEeeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhhhh
Confidence 378999999999999999999999999 4778 999999999999999999998 7999999998743 5666
Q ss_pred cc-cccCCCCeEEEEeeCCCCCCCceeEEEecC-CCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 026524 155 SF-VLKHVGPGVLSMANAGPNTNGSQFFICTVK-TPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 232 (237)
Q Consensus 155 ~~-~~~h~~~G~lsma~~g~~s~gSqFfItl~~-~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~ 232 (237)
.. .++|.+.|+|+|++.|.|.+||||||||++ ..+||++|+|||+|.||||+|.+|+..-++++++|.++|+|.+.-+
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTii 161 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTII 161 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEE
Confidence 54 789999999999999999999999999987 5699999999999999999999999999999999999999999999
Q ss_pred eeC
Q 026524 233 LPL 235 (237)
Q Consensus 233 l~~ 235 (237)
|++
T Consensus 162 LdD 164 (479)
T KOG0415|consen 162 LDD 164 (479)
T ss_pred ecC
Confidence 864
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00011 Score=69.32 Aligned_cols=144 Identities=23% Similarity=0.302 Sum_probs=113.0
Q ss_pred ceeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCc----ccccCC-CCCC--Cccc
Q 026524 85 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG----ISIYGS-SFED--ESFV 157 (237)
Q Consensus 85 ~G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg----~s~~g~-~~~d--e~~~ 157 (237)
.--|.|+|+.+-.|.-++-|...| ..++ +++..|-||.+.+++|.||.......+| |+..++ .|++ .++.
T Consensus 111 ~s~IAVs~~~sg~i~VvD~~~d~~--q~~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~ 187 (558)
T KOG0882|consen 111 ISLIAVSLFKSGKIFVVDGFGDFC--QDGY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFE 187 (558)
T ss_pred eeeEEeecccCCCcEEECCcCCcC--ccce-ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccc
Confidence 338999999999999999999999 5888 9999999999999999998653333233 222220 1222 4556
Q ss_pred ccCCCCeEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcCCCCCCCCCCCCeEEEeeEE
Q 026524 158 LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGE 232 (237)
Q Consensus 158 ~~h~~~G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~~t~~~~~P~~~v~I~~cG~ 232 (237)
++|. .-++.....-....+-+|++.-...+-+..+..|||++.+|-++++.|....++....|+.++.|.+...
T Consensus 188 ~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel 261 (558)
T KOG0882|consen 188 LKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL 261 (558)
T ss_pred cccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence 7774 5566666655555677899988888888899999999999999999999999999999999988877543
No 30
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0097 Score=55.62 Aligned_cols=103 Identities=25% Similarity=0.410 Sum_probs=66.4
Q ss_pred eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCCeE
Q 026524 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV 165 (237)
Q Consensus 86 G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~ 165 (237)
=.+.+||.++ +|++++.|++|. +.|. .=-....|-++ +..+......+.|++.+. .+|.
T Consensus 203 Ty~eve~s~n-sP~saEH~lalm--edG~-----lri~~~tntfi-----------s~~~lq~~~~~~en~d~R--erG~ 261 (512)
T COG4070 203 TYFEVELSRN-SPKSAEHFLALM--EDGT-----LRIDVTTNTFI-----------SDDTLQEEKVPEENFDLR--ERGA 261 (512)
T ss_pred EEEEEEeCCC-CchhHHHHHHHh--hcce-----EEEEEecccee-----------eccccccccCChhhhhhh--hcce
Confidence 4566777766 999999999998 4554 11111122222 112334556777887654 4899
Q ss_pred EEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhc
Q 026524 166 LSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 212 (237)
Q Consensus 166 lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~ 212 (237)
+...|.|.++ -.-||--.+-+ ---.|.|.|||++||++++--++
T Consensus 262 iTvRn~Gvge--GrvYIyRedR~-ss~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 262 ITVRNVGVGE--GRVYIYREDRP-SSLSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred EEEEeeeccc--ceEEEEecCCC-CccccceeeeeecceEEEEeccc
Confidence 9999977443 35688655433 22368999999999999875554
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.24 E-value=0.02 Score=54.90 Aligned_cols=103 Identities=22% Similarity=0.341 Sum_probs=65.3
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCCeEE
Q 026524 87 RIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGVL 166 (237)
Q Consensus 87 ~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~l 166 (237)
.+.+||.++ +|.+++.|+.+. +.|. + .+.+. .+-+| ...+..+...+.|++.. ..+|+|
T Consensus 202 y~evE~~~~-~p~s~EH~la~~--~~G~-~---~Vd~~-tsTfi-----------~d~~L~g~~~p~En~~~--R~rGtV 260 (503)
T TIGR03268 202 YVEVELDPN-APVSVEHFLALM--EDGT-F---RVDYR-TSTFI-----------SDDSLRGLDKPEENIEK--RRRGAV 260 (503)
T ss_pred EEEEEEcCC-CChhHHHHHHHH--hCCe-E---EEeee-ecceE-----------ecccccCccCCccccCc--ccceeE
Confidence 456676655 999999999998 4554 1 11111 01111 11233355566676643 258999
Q ss_pred EEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhcC
Q 026524 167 SMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESV 213 (237)
Q Consensus 167 sma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~~ 213 (237)
.+.+.|.+. -..||--.+-+ ..-.|+|+|+|+.|||+++--+..
T Consensus 261 TVRn~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~G 304 (503)
T TIGR03268 261 TVRNSGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQEG 304 (503)
T ss_pred EEEeeccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeecccCC
Confidence 999987443 35788666544 334699999999999998765443
No 32
>PRK00969 hypothetical protein; Provisional
Probab=96.21 E-value=0.018 Score=55.40 Aligned_cols=99 Identities=24% Similarity=0.421 Sum_probs=65.4
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCc---ccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCC
Q 026524 87 RIVMGLFGDVVPKTAENFRALCTGEKGY---GYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGP 163 (237)
Q Consensus 87 ~ivIeL~~d~aP~t~~NF~~Lc~g~~g~---~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~ 163 (237)
.+.+||.++ +|.+++.|+.+. +.|. .|.-+.| | ...+..|...+.|++.- .++
T Consensus 205 y~eve~~~~-~p~s~EH~la~~--~~G~f~Vd~~tstf--------I-----------~d~~L~g~~~p~En~~~--R~~ 260 (508)
T PRK00969 205 YVEVELDPG-APKSVEHFLALL--EDGTFEVDFETSTF--------I-----------ADDRLQGLKIPEENFEP--RRR 260 (508)
T ss_pred EEEEEEcCC-CCchHHHHHHHH--hCCeEEEeeeecce--------E-----------eeccccCccCCccccCc--ccc
Confidence 456677766 999999999998 4554 1111111 1 11233355566677643 258
Q ss_pred eEEEEeeCCCCCCCceeEEEecCCCCCCCCCeEEEEEEcCHHHHHHhhc
Q 026524 164 GVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 212 (237)
Q Consensus 164 G~lsma~~g~~s~gSqFfItl~~~~~ld~~~~vFG~VieG~dvl~~I~~ 212 (237)
|+|.+.+.|.+. -..||--.+-+ -.-.|+|+|+|+.|||+++--++
T Consensus 261 GtVTVRt~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 261 GTVTVRTAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred ceEEEEeeccCc--eeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence 999999987543 35788766544 23469999999999999875544
No 33
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.19 E-value=0.054 Score=52.09 Aligned_cols=115 Identities=20% Similarity=0.276 Sum_probs=66.7
Q ss_pred eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCCeE
Q 026524 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV 165 (237)
Q Consensus 86 G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~ 165 (237)
--|.|+||.+.||+|+..|+++. |-+-..---..+|=..++..+-=|+.. ++..+.+||..-.....|.
T Consensus 375 ~vi~IeLydd~AP~s~~yFRk~t-GL~~~~VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~~V~ag~ 443 (503)
T TIGR03268 375 KVIEIELYDDNAPRSVWYFRKFT-GLKTKPVGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPEDKVEAGV 443 (503)
T ss_pred hEEEEEEcccCCchHHHHHHHhc-CCcccccceeEEEEEeCCeeEeccCch----------hccccCCCCCCCCccccce
Confidence 35889999999999999999985 211110112345555666444333322 1223445555444556888
Q ss_pred EEEeeCCCCCCCceeEEEec------CCC-CCCCCCeEEEEEEcCHHHHHHhhcC
Q 026524 166 LSMANAGPNTNGSQFFICTV------KTP-WLDNRHVVFGHVIDGMDVVRKLESV 213 (237)
Q Consensus 166 lsma~~g~~s~gSqFfItl~------~~~-~ld~~~~vFG~VieG~dvl~~I~~~ 213 (237)
|+|-|......|- .=|-|. |+. .+++ --++|+|+++++.|+++...
T Consensus 444 IgvTN~a~k~~G~-IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~KeG 496 (503)
T TIGR03268 444 IGVTNQACKHVGM-IGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKEG 496 (503)
T ss_pred EeeechhhhcCce-EEEEccCCcccCCCCCCccC-cceEEEecCChhHhcccccC
Confidence 8888754222110 112222 322 2333 45669999999999888764
No 34
>PRK00969 hypothetical protein; Provisional
Probab=95.54 E-value=0.14 Score=49.38 Aligned_cols=114 Identities=19% Similarity=0.250 Sum_probs=66.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCcEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCCeE
Q 026524 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV 165 (237)
Q Consensus 86 G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G~ 165 (237)
--|.|+||.+.||+|+..|+++. |-+-..---..+|=..++-++--|+.. ++..+.+||..-.....|.
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~t-GL~~~~VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~~V~ag~ 446 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVT-GLKTKPVGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPEDKVKAGE 446 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhc-CCcccccceeEEEEEeCCeEEEccChh----------hccccCCCCCCCCccccce
Confidence 35889999999999999999986 211110112345555666555434332 1233455565555667888
Q ss_pred EEEeeCCCCCCCceeEEEec------CCC-CCCCCCeEEEEEEcCHHHHHHhhcC
Q 026524 166 LSMANAGPNTNGSQFFICTV------KTP-WLDNRHVVFGHVIDGMDVVRKLESV 213 (237)
Q Consensus 166 lsma~~g~~s~gSqFfItl~------~~~-~ld~~~~vFG~VieG~dvl~~I~~~ 213 (237)
|++-|......|- .=|-|. |+. .++ .--++|+|+ ++|-|+++...
T Consensus 447 IgvTN~a~k~~G~-iGVR~~d~d~fGPTGE~F~-gTNIIGrVv-~~e~Lk~lKeG 498 (508)
T PRK00969 447 IGVTNMAAKYKGM-IGVRLSDNDEFGPTGEPFE-GTNIIGRVV-NLEKLKKLKEG 498 (508)
T ss_pred EeeechhhhcCce-EEEEccCCcccCCCCCCcc-CceeEEEec-ChHHhcccccC
Confidence 8888754222110 112222 322 233 346779999 89999888764
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.19 Score=47.28 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=58.0
Q ss_pred eEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcCc-EE-EeCCCCCCCCCCcccccCCCCCCCcccccCCCCe
Q 026524 87 RIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF-MI-QGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPG 164 (237)
Q Consensus 87 ~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~~-~i-qgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~G 164 (237)
-|.||||.+.||+++..|+++.. -...---...+|-..++. ++ --|+.. ++.-...||..-....+|
T Consensus 377 iieIELyed~APrSv~yFRr~t~-l~~kpVGkL~Vhfay~d~~~vmfegn~~----------~~K~llPEN~P~d~Ve~g 445 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG-LKTKPVGKLKVHFAYDDTYLVMFEGNAV----------LAKGLLPENTPADTVEAG 445 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc-cccccccceEEEEEeCCceEEEEcCChH----------HhccCCCCCCchhheecc
Confidence 48999999999999999998862 111101123445555551 12 122222 122233333322223344
Q ss_pred EEEEeeCCCCCCCceeEEEec------CCCCCCCCCeEEEEEEcCHHHHHHhhcC
Q 026524 165 VLSMANAGPNTNGSQFFICTV------KTPWLDNRHVVFGHVIDGMDVVRKLESV 213 (237)
Q Consensus 165 ~lsma~~g~~s~gSqFfItl~------~~~~ld~~~~vFG~VieG~dvl~~I~~~ 213 (237)
.++.-|......|. .=+-|. ++..--..--++|+|++|.+-|..|...
T Consensus 446 ~iGvTN~a~r~~Gm-IGVRL~dsdefGPTGE~Fe~TNiIGrIveg~e~l~~ikeG 499 (512)
T COG4070 446 EIGVTNQAARHMGM-IGVRLEDSDEFGPTGEKFEGTNIIGRIVEGPERLIGIKEG 499 (512)
T ss_pred cccccccchhccce-eEEEeccccccCCCCCccccceeehhhccChHHhcccccC
Confidence 44443322110100 011122 2222223457889999999999988764
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=93.31 E-value=0.57 Score=38.40 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=55.8
Q ss_pred eeEEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEcC--cEEEeCCCCCCCCCCcccccCCCCCCCcccccCCCC
Q 026524 86 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKD--FMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGP 163 (237)
Q Consensus 86 G~ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~--~~iqgGd~~~~~g~gg~s~~g~~~~de~~~~~h~~~ 163 (237)
-.++.+|..|.||+||+-|.+.- - |.+..+|-...+ .|+.-+++.. .....||... +..+
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L---P---~~~~~~HarwSG~ei~~~l~~~~~-----------~~~~~EN~T~-~P~p 69 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL---P---LKGKVIHARWSGEEIWIPLPDFDP-----------FEPGRENHTV-TPIP 69 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSSSEEEEEEE--SS-----------S---S-SEES-S--T
T ss_pred eEEEEEEcccCChHHHHHHHHhC---C---CCCcEEEEEEECcEEEEECCCcCc-----------CCCCCCcCcc-cCCC
Confidence 36889999999999999999987 2 777777766554 4555555431 1122344322 3346
Q ss_pred eEEEEe--e-CCCC--CC-CceeEEEecC--------CCCCCCCCeEEEEEEcCHHHHHHhhc
Q 026524 164 GVLSMA--N-AGPN--TN-GSQFFICTVK--------TPWLDNRHVVFGHVIDGMDVVRKLES 212 (237)
Q Consensus 164 G~lsma--~-~g~~--s~-gSqFfItl~~--------~~~ld~~~~vFG~VieG~dvl~~I~~ 212 (237)
|-|.+- . ...+ .. =++.-|...- .-++- -.+|++|++|+|-|.++-+
T Consensus 70 Gdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 70 GDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEACR 130 (147)
T ss_dssp TEEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHHH
T ss_pred CcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHHH
Confidence 777665 1 1111 11 1333333332 22333 3799999999998776643
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=31.23 E-value=49 Score=25.81 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=28.5
Q ss_pred CCCeEEEEeeCCCCCCCceeEEEecCCC-------CCCCCCeEEEEEEcCHHHHHHhhc
Q 026524 161 VGPGVLSMANAGPNTNGSQFFICTVKTP-------WLDNRHVVFGHVIDGMDVVRKLES 212 (237)
Q Consensus 161 ~~~G~lsma~~g~~s~gSqFfItl~~~~-------~ld~~~~vFG~VieG~dvl~~I~~ 212 (237)
...|-|+.-..+.+ |-|-+++.| .+-....++|+|++|.+.++++..
T Consensus 60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 35788887654433 666666664 344568999999999988888754
No 38
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=25.32 E-value=3.6e+02 Score=21.64 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=29.5
Q ss_pred eeceeEEEEecCCC--Chh-------HHHHHHHHhccCCCcccCCCEEEEEEcC
Q 026524 83 KPAGRIVMGLFGDV--VPK-------TAENFRALCTGEKGYGYKGCSFHRIIKD 127 (237)
Q Consensus 83 t~~G~ivIeL~~d~--aP~-------t~~NF~~Lc~g~~g~~Y~g~~f~Rii~~ 127 (237)
+..||+.+..-.+. ||. +++.|++.. ++-..-+.+.|+-++++
T Consensus 10 sd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L--~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 10 SDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVL--KKYIDVEESTFYLVVRD 61 (130)
T ss_pred ccCceeEEEEeCCCcccccccchHHHHHHHHHHHH--HhhEEecccEEEEEEec
Confidence 45677766666443 333 588999988 34334688999999987
No 39
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=23.68 E-value=1e+02 Score=25.56 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=29.0
Q ss_pred EEEEecCCCChhHHHHHHHHhccCCCcccCCCEEEEEEc
Q 026524 88 IVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 126 (237)
Q Consensus 88 ivIeL~~d~aP~t~~NF~~Lc~g~~g~~Y~g~~f~Rii~ 126 (237)
+.|-||.-.-|..+.|.+++|. -.|+..|.|.|
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~ca------~tga~LhlI~P 35 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTCA------ATGAELHLIEP 35 (155)
T ss_pred cEEEEECCCCCCchhHHHHHHH------hcCCeEEEEcc
Confidence 6788999999999999999994 55899999976
No 40
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=21.41 E-value=1.1e+02 Score=21.37 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=20.5
Q ss_pred CCCCCeEEEEEEcCHHHHHHhhcCCCCCCC
Q 026524 190 LDNRHVVFGHVIDGMDVVRKLESVETSRTD 219 (237)
Q Consensus 190 ld~~~~vFG~VieG~dvl~~I~~~~t~~~~ 219 (237)
+|..-.++|+|++| -+++|.-..+++++
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G 43 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDG 43 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCC
Confidence 45667899999999 56667766666544
Done!