Your job contains 1 sequence.
>026528
MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC
LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS
VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS
ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026528
(237 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077522 - symbol:AT3G07750 "AT3G07750" species... 936 4.8e-94 1
ZFIN|ZDB-GENE-050417-47 - symbol:exosc7 "exosome componen... 443 8.4e-42 1
UNIPROTKB|Q15024 - symbol:EXOSC7 "Exosome complex compone... 395 1.0e-36 1
MGI|MGI:1913696 - symbol:Exosc7 "exosome component 7" spe... 393 1.7e-36 1
RGD|1309758 - symbol:Exosc7 "exosome component 7" species... 393 1.7e-36 1
DICTYBASE|DDB_G0280251 - symbol:DDB_G0280251 "putative ex... 281 7.1e-34 2
FB|FBgn0034065 - symbol:Rrp42 "Rrp42" species:7227 "Droso... 312 6.4e-28 1
UNIPROTKB|Q2KHU3 - symbol:EXOSC8 "Exosome complex compone... 247 4.9e-21 1
TAIR|locus:2089215 - symbol:RRP45a "AT3G12990" species:37... 246 6.3e-21 1
UNIPROTKB|Q96B26 - symbol:EXOSC8 "Exosome complex compone... 242 1.7e-20 1
TAIR|locus:2103316 - symbol:CER7 "AT3G60500" species:3702... 246 2.0e-20 1
UNIPROTKB|E2R7U8 - symbol:EXOSC8 "Uncharacterized protein... 231 2.5e-19 1
MGI|MGI:1916889 - symbol:Exosc8 "exosome component 8" spe... 230 3.1e-19 1
RGD|1306169 - symbol:Exosc8 "exosome component 8" species... 228 5.1e-19 1
POMBASE|SPCC757.08 - symbol:SPCC757.08 "exosome subunit R... 217 7.5e-18 1
TAIR|locus:2202705 - symbol:AT1G60080 "AT1G60080" species... 211 3.2e-17 1
UNIPROTKB|E1BUV1 - symbol:LOC100858560 "Uncharacterized p... 202 2.9e-16 1
RGD|1307888 - symbol:Exosc9 "exosome component 9" species... 195 8.3e-15 1
MGI|MGI:1355319 - symbol:Exosc9 "exosome component 9" spe... 195 8.3e-15 1
UNIPROTKB|F1S1T6 - symbol:EXOSC9 "Uncharacterized protein... 194 1.1e-14 1
UNIPROTKB|F1MB54 - symbol:EXOSC9 "Exosome complex compone... 193 1.4e-14 1
UNIPROTKB|Q3SWZ4 - symbol:EXOSC9 "Exosome complex compone... 193 1.4e-14 1
UNIPROTKB|Q06265 - symbol:EXOSC9 "Exosome complex compone... 192 1.8e-14 1
UNIPROTKB|F1NJI1 - symbol:EXOSC9 "Uncharacterized protein... 180 2.7e-13 1
GENEDB_PFALCIPARUM|MAL13P1.204 - symbol:MAL13P1.204 "exor... 172 5.8e-13 1
UNIPROTKB|Q8IDT4 - symbol:MAL13P1.204 "Exoribonuclease PH... 172 5.8e-13 1
GENEDB_PFALCIPARUM|PF13_0340 - symbol:PF13_0340 "exosome ... 178 7.1e-13 1
UNIPROTKB|Q8ID62 - symbol:PF13_0340 "Exosome complex exon... 178 7.1e-13 1
WB|WBGene00009289 - symbol:exos-7 species:6239 "Caenorhab... 172 1.0e-12 1
ASPGD|ASPL0000004691 - symbol:AN6111 species:162425 "Emer... 171 1.1e-12 1
WB|WBGene00018154 - symbol:exos-9 species:6239 "Caenorhab... 171 3.4e-12 1
FB|FBgn0030789 - symbol:Rrp45 "Rrp45" species:7227 "Droso... 165 1.4e-11 1
POMBASE|SPBC17D1.03c - symbol:SPBC17D1.03c "exosome subun... 157 2.9e-10 1
SGD|S000002688 - symbol:RRP45 "Exosome non-catalytic core... 150 5.4e-09 1
UNIPROTKB|Q8MPG3 - symbol:EAP2 "Exosome-associated protei... 147 1.3e-08 1
POMBASE|SPBC16G5.10 - symbol:SPBC16G5.10 "exosome subunit... 131 1.6e-06 1
UNIPROTKB|F1RSQ6 - symbol:EXOSC8 "Uncharacterized protein... 94 0.00023 1
SGD|S000002269 - symbol:RRP42 "Exosome non-catalytic core... 111 0.00031 1
UNIPROTKB|G5EI70 - symbol:MGCH7_ch7g406 "Exosome complex ... 108 0.00043 2
>TAIR|locus:2077522 [details] [associations]
symbol:AT3G07750 "AT3G07750" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0000478 "endonucleolytic cleavage involved in
rRNA processing" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
EMBL:CP002686 InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725
eggNOG:COG2123 KO:K12589 OMA:GRSCEDY HSSP:P50597 EMBL:AF325018
EMBL:BT020424 EMBL:AK119005 IPI:IPI00539704 RefSeq:NP_566318.1
RefSeq:NP_850537.1 UniGene:At.18345 ProteinModelPortal:Q9FPI0
SMR:Q9FPI0 IntAct:Q9FPI0 STRING:Q9FPI0 PaxDb:Q9FPI0 PRIDE:Q9FPI0
EnsemblPlants:AT3G07750.1 EnsemblPlants:AT3G07750.2 GeneID:819966
KEGG:ath:AT3G07750 TAIR:At3g07750 InParanoid:Q9FPI0
PhylomeDB:Q9FPI0 ProtClustDB:CLSN2688156 Genevestigator:Q9FPI0
Uniprot:Q9FPI0
Length = 286
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 182/223 (81%), Positives = 201/223 (90%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAE+GRPS++QPDKGKVA+F+DCSPTAEPTF GRGGEELS+EL+ ALQ C
Sbjct: 50 IGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGI+LSSL++ EGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL+NT IP
Sbjct: 110 LLGGKSGAGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPK 169
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V+AE A DEQPE+DISDEE+LQFDTS VPVI TLTKVG HYIVDAT EEESQMSSAVS
Sbjct: 170 VNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVS 229
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
IS+NR GHICG+ KR G GLDPSVILDMISVA V+ LM KL
Sbjct: 230 ISVNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKL 272
>ZFIN|ZDB-GENE-050417-47 [details] [associations]
symbol:exosc7 "exosome component 7" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-050417-47 InterPro:IPR020568 SUPFAM:SSF54211
Pfam:PF03725 KO:K12589 CTD:23016 HOVERGEN:HBG051521 EMBL:BC092997
IPI:IPI00507426 RefSeq:NP_001017585.1 UniGene:Dr.84480
ProteinModelPortal:Q561W8 SMR:Q561W8 STRING:Q561W8 GeneID:550247
KEGG:dre:550247 InParanoid:Q561W8 NextBio:20879510
ArrayExpress:Q561W8 Uniprot:Q561W8
Length = 291
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 92/221 (41%), Positives = 133/221 (60%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ +KAE+G+P M PD+G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGHTDVLVGIKAEIGKPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNTLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNRHS-----LDLRSLCICPGENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
VH++ + + E+++SD+ F ++ + VP I TL K+G ++VDATL+E++ ++
Sbjct: 168 VHISEDEEGGK--EIELSDDPFDCMRLNVENVPCIVTLCKIGHRHVVDATLQEKACSVAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+ I++ G + + K GG LDP I +M V + L
Sbjct: 226 LLIAVTHTGMVTCVRKMGGGSLDPESIFEMTEAGKRVGKSL 266
>UNIPROTKB|Q15024 [details] [associations]
symbol:EXOSC7 "Exosome complex component RRP42"
species:9606 "Homo sapiens" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000178 "exosome
(RNase complex)" evidence=IDA;TAS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006401 "RNA catabolic process" evidence=NAS] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
GO:GO:0000175 EMBL:AC104165 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
Pfam:PF03725 eggNOG:COG2123 KO:K12589 OMA:GRSCEDY EMBL:BC012831
EMBL:D29958 IPI:IPI00014198 RefSeq:NP_055819.2 UniGene:Hs.719958
ProteinModelPortal:Q15024 SMR:Q15024 IntAct:Q15024
MINT:MINT-1457458 STRING:Q15024 PhosphoSite:Q15024 DMDM:21362903
SWISS-2DPAGE:Q15024 PaxDb:Q15024 PeptideAtlas:Q15024 PRIDE:Q15024
DNASU:23016 Ensembl:ENST00000265564 GeneID:23016 KEGG:hsa:23016
UCSC:uc003coh.1 CTD:23016 GeneCards:GC03P045016 H-InvDB:HIX0003236
HGNC:HGNC:28112 HPA:HPA036182 MIM:606488 neXtProt:NX_Q15024
PharmGKB:PA134880567 HOGENOM:HOG000229504 HOVERGEN:HBG051521
InParanoid:Q15024 OrthoDB:EOG47SSF7 PhylomeDB:Q15024 ChiTaRS:EXOSC7
EvolutionaryTrace:Q15024 GenomeRNAi:23016 NextBio:43952
ArrayExpress:Q15024 Bgee:Q15024 Genevestigator:Q15024
GermOnline:ENSG00000075914 Uniprot:Q15024
Length = 291
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 82/221 (37%), Positives = 131/221 (59%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+ +S+ +G + M K G LDP I +M+ V + L
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVL 266
>MGI|MGI:1913696 [details] [associations]
symbol:Exosc7 "exosome component 7" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:1913696 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 EMBL:CH466587 Pfam:PF03725
eggNOG:COG2123 KO:K12589 OMA:GRSCEDY CTD:23016 HOGENOM:HOG000229504
HOVERGEN:HBG051521 OrthoDB:EOG47SSF7 EMBL:AK004437 EMBL:AK011294
EMBL:AC134248 EMBL:BC094932 EMBL:BC132363 EMBL:BC145675
IPI:IPI00132723 IPI:IPI00387489 RefSeq:NP_001074657.1
UniGene:Mm.41562 ProteinModelPortal:Q9D0M0 STRING:Q9D0M0
PhosphoSite:Q9D0M0 PaxDb:Q9D0M0 PRIDE:Q9D0M0
Ensembl:ENSMUST00000026891 GeneID:66446 KEGG:mmu:66446
GeneTree:ENSGT00530000063093 InParanoid:Q9D0M0 NextBio:321717
CleanEx:MM_EXOSC7 Genevestigator:Q9D0M0
GermOnline:ENSMUSG00000025785 Uniprot:Q9D0M0
Length = 291
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 83/221 (37%), Positives = 131/221 (59%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLED--EEGAKDIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+ +S+ +G + M K G LDP I +M+ + V + L
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRVGKVL 266
>RGD|1309758 [details] [associations]
symbol:Exosc7 "exosome component 7" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1309758
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 eggNOG:COG2123
KO:K12589 CTD:23016 HOGENOM:HOG000229504 HOVERGEN:HBG051521
OrthoDB:EOG47SSF7 EMBL:BC089995 IPI:IPI00210099
RefSeq:NP_001094195.1 UniGene:Rn.45886 ProteinModelPortal:Q5EB65
IntAct:Q5EB65 STRING:Q5EB65 GeneID:316098 KEGG:rno:316098
InParanoid:Q5EB65 NextBio:670427 Genevestigator:Q5EB65
Uniprot:Q5EB65
Length = 257
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 83/221 (37%), Positives = 130/221 (58%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P +G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 19 LGHTDILVGVKAEMGTPKLERPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 77
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 78 IFNNKSS----VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 133
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 134 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLAS 191
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+ +S+ +G + M K G LDP I +M+ + V + L
Sbjct: 192 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRVGKVL 232
>DICTYBASE|DDB_G0280251 [details] [associations]
symbol:DDB_G0280251 "putative exosome complex
exonuclease" species:44689 "Dictyostelium discoideum" [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR001247 dictyBase:DDB_G0280251 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005737 GO:GO:0005730 GenomeReviews:CM000152_GR
GO:GO:0003723 EMBL:AAFI02000035 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725 SUPFAM:SSF55666
RefSeq:XP_641331.1 HSSP:Q9UXC0 ProteinModelPortal:Q54VM4
STRING:Q54VM4 EnsemblProtists:DDB0206469 GeneID:8622465
KEGG:ddi:DDB_G0280251 eggNOG:COG2123 KO:K12589 OMA:GRSCEDY
ProtClustDB:CLSZ2729068 Uniprot:Q54VM4
Length = 324
Score = 281 (104.0 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 59/148 (39%), Positives = 92/148 (62%)
Query: 79 VVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEV--D 136
+V GK W LY+D +V+ SDGNL DAL A ++AL NT IP V +A E E+ +
Sbjct: 171 IVSGKYYWTLYVDAIVLDSDGNLFDALSIACRSALQNTRIPRV----KAIQGEYEEITFE 226
Query: 137 ISD--EEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIK 194
+SD E+ L VP+ TLTK+G +++D TL+EE M++ +++ +N +IC I+
Sbjct: 227 VSDDPEDTLSLSIDNVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICS-IQ 285
Query: 195 RGGV-GLDPSVILDMISVANFVSRQLMD 221
+GG+ GLDP+ I MI+ A V ++++
Sbjct: 286 KGGIDGLDPTTINQMINTAKVVGVKILN 313
Score = 103 (41.3 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 1 MGSTDVIASVKAELGR------PSAMQPDKGKVAIF-VDCSPTAEPTFEGRGGEELSAEL 53
+ T+V+ VKAE+ + Q D K +F V+C P+A P FEG+G E L+ EL
Sbjct: 51 LSQTEVLVGVKAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIEL 110
Query: 54 SSALQ 58
S L+
Sbjct: 111 SKQLE 115
>FB|FBgn0034065 [details] [associations]
symbol:Rrp42 "Rrp42" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652
"nuclear lamina" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
EMBL:AE013599 GO:GO:0005737 GO:GO:0022008 GO:GO:0016787
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0005652 GO:GO:0000176
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123 KO:K12589
GeneTree:ENSGT00530000063093 EMBL:BT024331 RefSeq:NP_725517.2
UniGene:Dm.16025 SMR:Q29QQ9 IntAct:Q29QQ9 STRING:Q29QQ9
EnsemblMetazoa:FBtr0087206 GeneID:36766 KEGG:dme:Dmel_CG8395
UCSC:CG8395-RA CTD:36766 FlyBase:FBgn0034065 InParanoid:Q29QQ9
OMA:DRNNKTP OrthoDB:EOG444J25 GenomeRNAi:36766 NextBio:800273
Uniprot:Q29QQ9
Length = 296
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 77/228 (33%), Positives = 122/228 (53%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQNA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 113 Y-----ESPLAFNYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEE--SQMS 176
V A ++ ISD + + VP++ T+ K+G + +VD + EEE S +S
Sbjct: 167 -RVTATMLDAGITDLIISDNPYDCTRIGIETVPLLVTVCKIGDYVLVDPSAEEEVCSTVS 225
Query: 177 SAVSISI-NRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
VS+S+ N Q + G GG + + + + + + L D+L
Sbjct: 226 MVVSVSMRNGQAFLSGTHLTGGGAMHRDTMRNCLELGLAIGEHL-DRL 272
>UNIPROTKB|Q2KHU3 [details] [associations]
symbol:EXOSC8 "Exosome complex component RRP43"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093
EMBL:BC112881 IPI:IPI00692861 RefSeq:NP_001073074.1
UniGene:Bt.55156 ProteinModelPortal:Q2KHU3 SMR:Q2KHU3 STRING:Q2KHU3
Ensembl:ENSBTAT00000015733 GeneID:532080 KEGG:bta:532080 CTD:11340
HOVERGEN:HBG051522 InParanoid:Q2KHU3 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ NextBio:20875602 Uniprot:Q2KHU3
Length = 276
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 75/228 (32%), Positives = 113/228 (49%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE G P PDKG V VD SP F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEE--AQVASQFIA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ I L + GK+ W LY D + ++ DGN+LDA A+ AAL N +P
Sbjct: 111 DVIENSQI----IQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY-IVDATLEEESQMSSA 178
V + E A EV++ + L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETAL---AEVNLKKKSCLNIRTH--PVATSFAVFDDTLLIVDPTEEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA---NFVSRQLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A + ++LMD++
Sbjct: 222 LTVVMDEEGRLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEV 269
>TAIR|locus:2089215 [details] [associations]
symbol:RRP45a "AT3G12990" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0010025 "wax biosynthetic process" evidence=IGI]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GO:GO:0010025 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 KO:K03678 EMBL:AB026645 EMBL:BT003077 EMBL:AK227231
IPI:IPI00533330 RefSeq:NP_001030684.1 RefSeq:NP_001189874.1
RefSeq:NP_566441.1 UniGene:At.11988 ProteinModelPortal:Q9LDM2
SMR:Q9LDM2 STRING:Q9LDM2 PRIDE:Q9LDM2 DNASU:820485
EnsemblPlants:AT3G12990.1 EnsemblPlants:AT3G12990.2
EnsemblPlants:AT3G12990.3 GeneID:820485 KEGG:ath:AT3G12990
TAIR:At3g12990 InParanoid:Q9LDM2 OMA:HEFRDIS PhylomeDB:Q9LDM2
ProtClustDB:CLSN2688326 Genevestigator:Q9LDM2 Uniprot:Q9LDM2
Length = 307
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 69/219 (31%), Positives = 110/219 (50%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V A+L +P +P +G +IF + SP A+P+FE G GE + EL +
Sbjct: 55 LGQTHVMAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 114 ALRESRA-----VDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRP 168
Query: 120 SVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQ 174
V + + D PE + E L +P+ T G ++D T EE+
Sbjct: 169 DCTVGGDNSQDVIIHPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAV 224
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
M +++++N G IC + K G G++ SVIL + +A+
Sbjct: 225 MCGRMTVTVNANGDICAIQKPGEEGVNQSVILHCLRLAS 263
>UNIPROTKB|Q96B26 [details] [associations]
symbol:EXOSC8 "Exosome complex component RRP43"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0000178 "exosome (RNase
complex)" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0004532 "exoribonuclease activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
GO:GO:0005634 GO:GO:0010467 GO:GO:0005730 EMBL:CH471075
GO:GO:0017091 GO:GO:0000178 EMBL:AL138706 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123 HOGENOM:HOG000229504
CTD:11340 HOVERGEN:HBG051522 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ EMBL:BC020773 EMBL:AF025438 IPI:IPI00552920
RefSeq:NP_852480.1 UniGene:Hs.294041 ProteinModelPortal:Q96B26
SMR:Q96B26 IntAct:Q96B26 STRING:Q96B26 PhosphoSite:Q96B26
DMDM:21759409 SWISS-2DPAGE:Q96B26 PaxDb:Q96B26 PeptideAtlas:Q96B26
PRIDE:Q96B26 DNASU:11340 Ensembl:ENST00000389704 GeneID:11340
KEGG:hsa:11340 UCSC:uc001uwa.3 GeneCards:GC13P037572
HGNC:HGNC:17035 MIM:606019 neXtProt:NX_Q96B26 PharmGKB:PA134922251
InParanoid:Q96B26 EvolutionaryTrace:Q96B26 GenomeRNAi:11340
NextBio:43089 ArrayExpress:Q96B26 Bgee:Q96B26 CleanEx:HS_EXOSC8
Genevestigator:Q96B26 GermOnline:ENSG00000120699 Uniprot:Q96B26
Length = 276
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 76/228 (33%), Positives = 112/228 (49%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQFIA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 DVIENSQI----IQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY-IVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETAL---AEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA---NFVSRQLMDKL 223
++I ++ +G +C + K GG GL + + D +S A + ++LMD++
Sbjct: 222 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEV 269
>TAIR|locus:2103316 [details] [associations]
symbol:CER7 "AT3G60500" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0010025 "wax biosynthetic
process" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL138646
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 Pfam:PF03725
SUPFAM:SSF55666 HOGENOM:HOG000229504 KO:K03678 EMBL:BT004196
EMBL:BT005701 EMBL:DQ869270 IPI:IPI00517590 PIR:T47861
RefSeq:NP_001190143.1 RefSeq:NP_191609.1 RefSeq:NP_974466.1
UniGene:At.34436 ProteinModelPortal:Q9M209 SMR:Q9M209 IntAct:Q9M209
STRING:Q9M209 PRIDE:Q9M209 EnsemblPlants:AT3G60500.1
EnsemblPlants:AT3G60500.2 EnsemblPlants:AT3G60500.3 GeneID:825221
KEGG:ath:AT3G60500 TAIR:At3g60500 InParanoid:Q9M209 OMA:KEAACLD
PhylomeDB:Q9M209 ProtClustDB:CLSN2685053 Genevestigator:Q9M209
Uniprot:Q9M209
Length = 438
Score = 246 (91.7 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 69/216 (31%), Positives = 110/216 (50%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P++G ++IF + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 114 GLRESRA-----VDTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRP 168
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV--DATLEEESQMSS 177
V E + + + E L +P+ T K IV D T EE+ M
Sbjct: 169 DCTVGGENGQEVIIH-PLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCG 227
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
+++++N G IC + K G G++ SVIL + +A+
Sbjct: 228 RMTVTVNANGDICAIQKPGEEGVNQSVILHCLRLAS 263
>UNIPROTKB|E2R7U8 [details] [associations]
symbol:EXOSC8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005634 GO:GO:0005737 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 CTD:11340 KO:K12586 EMBL:AAEX03014203
RefSeq:XP_534492.2 Ensembl:ENSCAFT00000009898 GeneID:477300
KEGG:cfa:477300 NextBio:20852818 Uniprot:E2R7U8
Length = 276
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 72/228 (31%), Positives = 110/228 (48%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQFIA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 DVIENSQI----IQKEDLCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY-IVDATLEEESQMSSA 178
V + E EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETGL---AEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA---NFVSRQLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A + ++LMD++
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEV 269
>MGI|MGI:1916889 [details] [associations]
symbol:Exosc8 "exosome component 8" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1916889 Pfam:PF01138
GO:GO:0005737 GO:GO:0005730 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG2123 GeneTree:ENSGT00530000063093
CTD:11340 HOVERGEN:HBG051522 KO:K12586 OMA:QAASQFI
OrthoDB:EOG47M1ZJ EMBL:AK009584 IPI:IPI00109639 RefSeq:NP_081424.3
UniGene:Mm.29253 ProteinModelPortal:Q9D753 SMR:Q9D753 STRING:Q9D753
PhosphoSite:Q9D753 PaxDb:Q9D753 PRIDE:Q9D753
Ensembl:ENSMUST00000029316 GeneID:69639 KEGG:mmu:69639
InParanoid:Q9D753 NextBio:329962 Bgee:Q9D753 CleanEx:MM_EXOSC8
Genevestigator:Q9D753 GermOnline:ENSMUSG00000027752 Uniprot:Q9D753
Length = 276
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 70/214 (32%), Positives = 102/214 (47%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQFIA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 DVVDNSQV----IKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY-IVDATLEEESQMSSA 178
V + E A EV++ + +L T+ PV T+ IVD T EEE +
Sbjct: 167 EVTINEETAL---AEVNLKKKSYLNVRTN--PVATSFAVFDDTLLIVDPTGEEEHLSTGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+++ + G +C + K GG GL + + D +S A
Sbjct: 222 LTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRA 255
>RGD|1306169 [details] [associations]
symbol:Exosc8 "exosome component 8" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1306169
InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:QAASQFI OrthoDB:EOG47M1ZJ
EMBL:CH474003 IPI:IPI00372206 UniGene:Rn.93933
Ensembl:ENSRNOT00000017993 UCSC:RGD:1306169 Uniprot:D4AE98
Length = 276
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 69/214 (32%), Positives = 103/214 (48%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQFIA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 DVIENSQI----IKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY-IVDATLEEESQMSSA 178
V + E A EV++ + +L + PV T+ IVD T EEE +
Sbjct: 167 EVTINEETAL---AEVNLKKKSYLNVRAN--PVATSFAVFDDTLLIVDPTGEEEHLSTGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+++ ++ +G +C + K GG GL + + D +S A
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA 255
>POMBASE|SPCC757.08 [details] [associations]
symbol:SPCC757.08 "exosome subunit Rrp45 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPCC757.08 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K03678 PIR:T41599 RefSeq:NP_587683.1
ProteinModelPortal:O74918 STRING:O74918 EnsemblFungi:SPCC757.08.1
GeneID:2539106 KEGG:spo:SPCC757.08 OMA:LIDASCI OrthoDB:EOG4X0R2H
NextBio:20800278 Uniprot:O74918
Length = 291
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 62/214 (28%), Positives = 106/214 (49%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
G T V+A + E+ +P +P G +I + +P A FE GR ++ +S ++
Sbjct: 52 GHTRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQ-EIVISRLIEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G+ CW + I+ DGNL+DA A+ AAL + P
Sbjct: 111 VR--RSNA---LDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
+ V E + E + + +P+ T + G+ IVDATLEEE + +
Sbjct: 166 LTVVGEEVTVHPVEERVP----VPLSILHMPICVTFSFFNNGELAIVDATLEEEDLCNGS 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
++I++N+ +C + K GG+ +DPS I+ A
Sbjct: 222 MTITLNKNREVCQIYKAGGIIIDPSKIISCAKTA 255
>TAIR|locus:2202705 [details] [associations]
symbol:AT1G60080 "AT1G60080" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AC005966 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K12586 OMA:ECINRAT EMBL:BT004614
EMBL:AK227971 IPI:IPI00541560 PIR:D96625 RefSeq:NP_176216.1
UniGene:At.36723 ProteinModelPortal:Q9ZUI4 SMR:Q9ZUI4 IntAct:Q9ZUI4
STRING:Q9ZUI4 PaxDb:Q9ZUI4 PRIDE:Q9ZUI4 EnsemblPlants:AT1G60080.1
GeneID:842303 KEGG:ath:AT1G60080 TAIR:At1g60080 InParanoid:Q9ZUI4
PhylomeDB:Q9ZUI4 ProtClustDB:CLSN2679723 Genevestigator:Q9ZUI4
Uniprot:Q9ZUI4
Length = 302
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 69/232 (29%), Positives = 107/232 (46%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST ++A+++ E+ PS PD+G +AI P PT E + +S L
Sbjct: 67 IGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDT 126
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L SG IDL L +V GK W Y+D + +DG L DA A AA SN IP
Sbjct: 127 ILS--SGM---IDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPI 181
Query: 121 V------HVAAEAASDEQPEVDISDEEFL-----QFDTSGVPVITTLTKVGKHYIV-DAT 168
V + A +Q I+++E + + +P T + K+YI+ D T
Sbjct: 182 VALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCI-LHKNYILADPT 240
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLD-PSVILDMISVANFVSRQL 219
EEES M + V++ ++ + K GG L S I + +A +++L
Sbjct: 241 TEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKEL 292
>UNIPROTKB|E1BUV1 [details] [associations]
symbol:LOC100858560 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634
GO:GO:0005737 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:QAASQFI EMBL:AADN02005299
IPI:IPI00580554 Ensembl:ENSGALT00000027544 Uniprot:E1BUV1
Length = 277
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 67/227 (29%), Positives = 102/227 (44%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAEL P+ +KG + V+ F G GEE A S +
Sbjct: 53 LGNTTVICGVKAELAAPALDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAA-SQFIAD 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I L + +GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 112 VIENSQV-----IAKEDLCIADGKLAWVLYCDIICLDYDGNILDASTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
SV + E E V++ + L V + IVD T EEE + V
Sbjct: 167 SVTINEETGLSE---VNLKQKNPLVIRKHPVATSFAIFDESTLLIVDPTAEEEDLATGTV 223
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVA---NFVSRQLMDKL 223
++ + +C + K GG L + + D IS A + ++L+DK+
Sbjct: 224 TVVTDEDDRLCSVHKPGGSPLTGAKLQDCISRAITRHKEVKKLIDKV 270
>RGD|1307888 [details] [associations]
symbol:Exosc9 "exosome component 9" species:10116 "Rattus
norvegicus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)"
evidence=ISO;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO] [GO:0030307
"positive regulation of cell growth" evidence=IEA;ISO] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0071028
"nuclear mRNA surveillance" evidence=IEA;ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1307888
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0017091
GO:GO:0000178 GO:GO:0071035 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0006364 GO:GO:0043928 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG2123 HOGENOM:HOG000229504
GeneTree:ENSGT00530000063093 HSSP:O29756 CTD:5393
HOVERGEN:HBG051523 KO:K03678 OrthoDB:EOG43TZVZ OMA:YRNIRIS
EMBL:BC097413 IPI:IPI00206563 RefSeq:NP_001020577.1
UniGene:Rn.13826 STRING:Q4QR75 Ensembl:ENSRNOT00000020662
GeneID:294975 KEGG:rno:294975 UCSC:RGD:1307888 InParanoid:Q4QR75
NextBio:638811 Genevestigator:Q4QR75 Uniprot:Q4QR75
Length = 437
Score = 195 (73.7 bits), Expect = 8.3e-15, P = 8.3e-15
Identities = 58/200 (29%), Positives = 89/200 (44%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V V E + PE D L + V + G + +VD EE M +
Sbjct: 165 VSVQGEEVTLYTPEE--RDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLV 222
Query: 181 ISINRQGHICGMIKRGGVGL 200
I++N+ IC + GG+ L
Sbjct: 223 IAMNKHREICTIQSSGGIML 242
>MGI|MGI:1355319 [details] [associations]
symbol:Exosc9 "exosome component 9" species:10090 "Mus
musculus" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=ISO] [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=ISO] [GO:0030307 "positive regulation of
cell growth" evidence=ISO] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=ISO] [GO:0071028 "nuclear
mRNA surveillance" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 MGI:MGI:1355319 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0017091
GO:GO:0004527 GO:GO:0090305 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093 CTD:5393
HOVERGEN:HBG051523 KO:K03678 OrthoDB:EOG43TZVZ OMA:YRNIRIS
EMBL:AF152841 EMBL:AF152842 EMBL:BC005622 EMBL:BC052156
EMBL:AK011636 IPI:IPI00119442 RefSeq:NP_062266.1 UniGene:Mm.116711
ProteinModelPortal:Q9JHI7 SMR:Q9JHI7 STRING:Q9JHI7
PhosphoSite:Q9JHI7 PaxDb:Q9JHI7 PRIDE:Q9JHI7
Ensembl:ENSMUST00000029269 GeneID:50911 KEGG:mmu:50911
UCSC:uc008ozm.1 InParanoid:Q9JHI7 NextBio:307895 Bgee:Q9JHI7
CleanEx:MM_EXOSC9 Genevestigator:Q9JHI7
GermOnline:ENSMUSG00000027714 Uniprot:Q9JHI7
Length = 438
Score = 195 (73.7 bits), Expect = 8.3e-15, P = 8.3e-15
Identities = 58/200 (29%), Positives = 89/200 (44%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V V E + PE D L + V + G + +VD EE M +
Sbjct: 165 VSVQGEEVTLYTPEE--RDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLV 222
Query: 181 ISINRQGHICGMIKRGGVGL 200
I++N+ IC + GG+ L
Sbjct: 223 IAMNKHREICTIQSSGGIML 242
>UNIPROTKB|F1S1T6 [details] [associations]
symbol:EXOSC9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071028 "nuclear mRNA
surveillance" evidence=IEA] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
GO:GO:0030307 GO:GO:0017091 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0043928 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00530000063093
OMA:YRNIRIS EMBL:CU861488 EMBL:AEMK01190186
Ensembl:ENSSSCT00000009962 Uniprot:F1S1T6
Length = 442
Score = 194 (73.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 59/212 (27%), Positives = 93/212 (43%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V V + + PE D L + V + G + +VD EE M +
Sbjct: 165 VSVQGDEVTLYTPEE--RDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLV 222
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
I++N+ IC + GG+ L +L +A
Sbjct: 223 IAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>UNIPROTKB|F1MB54 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9913 "Bos taurus" [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
GO:GO:0030307 GO:GO:0017091 GO:GO:0000178 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0043928 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00530000063093
IPI:IPI00714906 UniGene:Bt.12557 OMA:YRNIRIS EMBL:DAAA02015230
Ensembl:ENSBTAT00000006502 Uniprot:F1MB54
Length = 440
Score = 193 (73.0 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 57/214 (26%), Positives = 96/214 (44%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V DE + + + + +P+ + + G + +VD + EE M
Sbjct: 165 VSVQG----DEVTLYTLEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>UNIPROTKB|Q3SWZ4 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG2123 HOGENOM:HOG000229504 EMBL:BC104587 IPI:IPI00714906
RefSeq:NP_001030225.1 UniGene:Bt.12557 HSSP:O29756 STRING:Q3SWZ4
PRIDE:Q3SWZ4 GeneID:508005 KEGG:bta:508005 CTD:5393
HOVERGEN:HBG051523 InParanoid:Q3SWZ4 KO:K03678 OrthoDB:EOG43TZVZ
NextBio:20868308 Uniprot:Q3SWZ4
Length = 440
Score = 193 (73.0 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 57/214 (26%), Positives = 96/214 (44%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V DE + + + + +P+ + + G + +VD + EE M
Sbjct: 165 VSVQG----DEVTLYTLEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>UNIPROTKB|Q06265 [details] [associations]
symbol:EXOSC9 "Exosome complex component RRP45"
species:9606 "Homo sapiens" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0006364
"rRNA processing" evidence=NAS] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA;NAS] [GO:0006955 "immune response"
evidence=NAS] [GO:0000178 "exosome (RNase complex)" evidence=IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IMP;TAS] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0030307
"positive regulation of cell growth" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005634 GO:GO:0030307
GO:GO:0006955 GO:GO:0005730 GO:GO:0017091 GO:GO:0071035
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC079341 GO:GO:0006364
GO:GO:0000176 GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
HOGENOM:HOG000229504 CTD:5393 HOVERGEN:HBG051523 KO:K03678
OrthoDB:EOG43TZVZ EMBL:M58460 EMBL:U09215 EMBL:AJ505989
EMBL:AJ517294 IPI:IPI00029697 IPI:IPI00607722 IPI:IPI00654592
IPI:IPI00845426 PIR:G01425 RefSeq:NP_001029366.1 RefSeq:NP_005024.2
UniGene:Hs.91728 ProteinModelPortal:Q06265 SMR:Q06265 IntAct:Q06265
MINT:MINT-1036055 STRING:Q06265 PhosphoSite:Q06265 DMDM:147744559
PaxDb:Q06265 PRIDE:Q06265 Ensembl:ENST00000243498
Ensembl:ENST00000379663 GeneID:5393 KEGG:hsa:5393 UCSC:uc003idz.3
UCSC:uc003iea.3 GeneCards:GC04P122722 HGNC:HGNC:9137 HPA:HPA041838
MIM:606180 neXtProt:NX_Q06265 PharmGKB:PA33463 OMA:YRNIRIS
EvolutionaryTrace:Q06265 GenomeRNAi:5393 NextBio:20906
ArrayExpress:Q06265 Bgee:Q06265 CleanEx:HS_EXOSC9
Genevestigator:Q06265 GermOnline:ENSG00000123737 Uniprot:Q06265
Length = 439
Score = 192 (72.6 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 58/212 (27%), Positives = 93/212 (43%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V V + + PE D L + V + G + +VD EE M +
Sbjct: 165 VSVQGDEVTLYTPEE--RDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLV 222
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
I++N+ IC + GG+ L +L +A
Sbjct: 223 IAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>UNIPROTKB|F1NJI1 [details] [associations]
symbol:EXOSC9 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0071035
"nuclear polyadenylation-dependent rRNA catabolic process"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005634 GO:GO:0005737 GO:GO:0030307 GO:GO:0017091
GO:GO:0000178 GO:GO:0071035 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0043928 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00530000063093 OMA:YRNIRIS EMBL:AADN02008699
EMBL:AADN02009245 EMBL:AADN02009246 IPI:IPI00579597
Ensembl:ENSGALT00000019390 ArrayExpress:F1NJI1 Uniprot:F1NJI1
Length = 387
Score = 180 (68.4 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 55/195 (28%), Positives = 87/195 (44%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
V+ V EL P + +G + ++ SP A P FE EL +++ ++ CL K
Sbjct: 2 VLGQVSCELVPPKPNRATEGILFCNLELSPMAAPGFEPGRQSELLVKVNRLIERCLRNSK 61
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
ID SL VV G+ W + +D +++ DGN++DA A AL + P V V
Sbjct: 62 C-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIVDAASIAGIVALCHFRRPDVSVQG 116
Query: 126 EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINR 185
+ + PE D L + V + G + +VD EE M + I++N+
Sbjct: 117 KEVTVYSPEE--RDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNK 174
Query: 186 QGHICGMIKRGGVGL 200
IC + GG+ L
Sbjct: 175 HREICTIQSSGGIML 189
>GENEDB_PFALCIPARUM|MAL13P1.204 [details] [associations]
symbol:MAL13P1.204 "exoribonuclease PH,
putative" species:5833 "Plasmodium falciparum" [GO:0008033 "tRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0008033 InterPro:IPR020568 SUPFAM:SSF54211
EMBL:AL844509 Pfam:PF03725 SUPFAM:SSF55666 KO:K12589
RefSeq:XP_001350126.1 ProteinModelPortal:Q8IDT4
EnsemblProtists:MAL13P1.204:mRNA GeneID:813762 KEGG:pfa:MAL13P1.204
EuPathDB:PlasmoDB:PF3D7_1340100 HOGENOM:HOG000283313 OMA:DELEYAR
ProtClustDB:CLSZ2433350 Uniprot:Q8IDT4
Length = 278
Score = 172 (65.6 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 53/227 (23%), Positives = 103/227 (45%)
Query: 5 DVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGG 64
+VI +K L P D+G V + +DC + + + L + C+
Sbjct: 50 NVICGIKLSLITPDVDTYDEGNVNLQIDCPASVAANRIKK--DHLQTMTTIIYNLCI--- 104
Query: 65 KSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVA 124
K+ I+ L ++ GK W + I+ +V+++ G LLD + AI AL +T P V
Sbjct: 105 KNN----INKKILCILPGKFAWSVDINVMVLNAGGGLLDIISIAIYVALKDTFFPIVKPK 160
Query: 125 AEAA--------SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
E S++ +++I + E + F +P+ ++ ++ YI D + EE +
Sbjct: 161 KEIEEENTFHEISNKDYQLEIVENEHVNFPYENIPICISIGEINNKYIYDMSKVEEELVQ 220
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ ++I +G K G+ ++ S IL++ ++ +S L DK+
Sbjct: 221 NIFVVAITSKGKCVAFHKLYGISMEISSILNITENSSKISHTLFDKI 267
>UNIPROTKB|Q8IDT4 [details] [associations]
symbol:MAL13P1.204 "Exoribonuclease PH, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008033 "tRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0008033 InterPro:IPR020568 SUPFAM:SSF54211
EMBL:AL844509 Pfam:PF03725 SUPFAM:SSF55666 KO:K12589
RefSeq:XP_001350126.1 ProteinModelPortal:Q8IDT4
EnsemblProtists:MAL13P1.204:mRNA GeneID:813762 KEGG:pfa:MAL13P1.204
EuPathDB:PlasmoDB:PF3D7_1340100 HOGENOM:HOG000283313 OMA:DELEYAR
ProtClustDB:CLSZ2433350 Uniprot:Q8IDT4
Length = 278
Score = 172 (65.6 bits), Expect = 5.8e-13, P = 5.8e-13
Identities = 53/227 (23%), Positives = 103/227 (45%)
Query: 5 DVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGG 64
+VI +K L P D+G V + +DC + + + L + C+
Sbjct: 50 NVICGIKLSLITPDVDTYDEGNVNLQIDCPASVAANRIKK--DHLQTMTTIIYNLCI--- 104
Query: 65 KSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVA 124
K+ I+ L ++ GK W + I+ +V+++ G LLD + AI AL +T P V
Sbjct: 105 KNN----INKKILCILPGKFAWSVDINVMVLNAGGGLLDIISIAIYVALKDTFFPIVKPK 160
Query: 125 AEAA--------SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
E S++ +++I + E + F +P+ ++ ++ YI D + EE +
Sbjct: 161 KEIEEENTFHEISNKDYQLEIVENEHVNFPYENIPICISIGEINNKYIYDMSKVEEELVQ 220
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ ++I +G K G+ ++ S IL++ ++ +S L DK+
Sbjct: 221 NIFVVAITSKGKCVAFHKLYGISMEISSILNITENSSKISHTLFDKI 267
>GENEDB_PFALCIPARUM|PF13_0340 [details] [associations]
symbol:PF13_0340 "exosome complex exonuclease,
putative" species:5833 "Plasmodium falciparum" [GO:0000178 "exosome
(RNase complex)" evidence=ISS] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AL844509 Pfam:PF03725
SUPFAM:SSF55666 RefSeq:XP_001350356.1 ProteinModelPortal:Q8ID62
EnsemblProtists:PF13_0340:mRNA GeneID:814299 KEGG:pfa:PF13_0340
EuPathDB:PlasmoDB:PF3D7_1364500 HOGENOM:HOG000281747 KO:K01149
OMA:RESIHEN ProtClustDB:CLSZ2433147 Uniprot:Q8ID62
Length = 477
Score = 178 (67.7 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 57/216 (26%), Positives = 101/216 (46%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + +E+ +P + +G + I +D E + E+ + +
Sbjct: 47 IGFTKVICKITSEIVKPHDRKLKEGILKINLDIDNFIEDNENSDNMSDECLEIKNIIDRV 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L I+ SL ++ GK W + I+ +VI +DGNL DA + L +
Sbjct: 107 LKTSNI-----INFESLCIIPGKKVWCICINIMVIENDGNLTDACYLSAYCGLVHFKNHQ 161
Query: 121 VHVA--AEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQMS 176
V V + D++ E++ S L P++TT +H + +D L EE MS
Sbjct: 162 VRVIKNGDIIIDKE-EINYSPLSILNS-----PIVTTFAYYEEHDVCLIDPCLHEEEFMS 215
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
S +SI++N+ G++ ++K GG+ L S I++ I +A
Sbjct: 216 SKISIALNKNGNLISLLKPGGIPLACSHIMESIEIA 251
>UNIPROTKB|Q8ID62 [details] [associations]
symbol:PF13_0340 "Exosome complex exonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000178 "exosome
(RNase complex)" evidence=ISS] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AL844509 Pfam:PF03725
SUPFAM:SSF55666 RefSeq:XP_001350356.1 ProteinModelPortal:Q8ID62
EnsemblProtists:PF13_0340:mRNA GeneID:814299 KEGG:pfa:PF13_0340
EuPathDB:PlasmoDB:PF3D7_1364500 HOGENOM:HOG000281747 KO:K01149
OMA:RESIHEN ProtClustDB:CLSZ2433147 Uniprot:Q8ID62
Length = 477
Score = 178 (67.7 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 57/216 (26%), Positives = 101/216 (46%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + +E+ +P + +G + I +D E + E+ + +
Sbjct: 47 IGFTKVICKITSEIVKPHDRKLKEGILKINLDIDNFIEDNENSDNMSDECLEIKNIIDRV 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L I+ SL ++ GK W + I+ +VI +DGNL DA + L +
Sbjct: 107 LKTSNI-----INFESLCIIPGKKVWCICINIMVIENDGNLTDACYLSAYCGLVHFKNHQ 161
Query: 121 VHVA--AEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQMS 176
V V + D++ E++ S L P++TT +H + +D L EE MS
Sbjct: 162 VRVIKNGDIIIDKE-EINYSPLSILNS-----PIVTTFAYYEEHDVCLIDPCLHEEEFMS 215
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
S +SI++N+ G++ ++K GG+ L S I++ I +A
Sbjct: 216 SKISIALNKNGNLISLLKPGGIPLACSHIMESIEIA 251
>WB|WBGene00009289 [details] [associations]
symbol:exos-7 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR001247
Pfam:PF01138 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 InterPro:IPR020568 SUPFAM:SSF54211
KO:K12589 OMA:GRSCEDY GeneTree:ENSGT00530000063093 EMBL:Z92838
EMBL:Z92832 PIR:T21601 RefSeq:NP_508024.2 ProteinModelPortal:G5EDS8
SMR:G5EDS8 EnsemblMetazoa:F31D4.1.1 EnsemblMetazoa:F31D4.1.2
GeneID:180369 KEGG:cel:CELE_F31D4.1 CTD:180369 WormBase:F31D4.1
NextBio:909072 Uniprot:G5EDS8
Length = 312
Score = 172 (65.6 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 58/194 (29%), Positives = 94/194 (48%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAI-F-VDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+TDV+A +K EL A + K I F VD S A F G+GG+E + ELS+A Q
Sbjct: 55 TTDVLAGIKLELESYDAETEKEPKQPINFNVDFSANASSQFAGKGGDEYAEELSAAFQAA 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L+ + +G W + +D V+ DG++ DA+ AI ALS+ P
Sbjct: 115 Y---SKALDIMPNLAKTQLADG-YRWKINVDISVLQWDGSVSDAISIAIIGALSDLEFPE 170
Query: 121 VHVAAEAASD-----EQPEV--DISDEE----FLQFDTSGVPVITTLTKVGKHYIVDATL 169
VA + ++P+V ++ DE + D P++ T++K+G +VD T
Sbjct: 171 GDVAPDDGGKVRIVLKRPKVAGNVRDENVQVAMWKLDVMRCPLLLTISKIGTANLVDCTP 230
Query: 170 EEESQMSSAVSISI 183
EEE + S + + +
Sbjct: 231 EEECCIRSQLLVGL 244
>ASPGD|ASPL0000004691 [details] [associations]
symbol:AN6111 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 EMBL:BN001301 EMBL:AACD01000104
GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211 Pfam:PF03725
eggNOG:COG2123 HOGENOM:HOG000229504 KO:K03678 OMA:LIDASCI
OrthoDB:EOG4X0R2H RefSeq:XP_663715.1 ProteinModelPortal:Q5B019
STRING:Q5B019 EnsemblFungi:CADANIAT00006901 GeneID:2871127
KEGG:ani:AN6111.2 Uniprot:Q5B019
Length = 295
Score = 171 (65.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 60/216 (27%), Positives = 97/216 (44%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T ++ + AE+ +P +P G I ++ + P +E GR G+ L +++ L
Sbjct: 51 LGKTSLVVRISAEVAKPHDDRPFDGIFNIAMELTAMGSPAWENGRQGD-LETYVTNVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ S A +D SL +++G CW + D + DGNL+DA + A L + P
Sbjct: 110 VIR--HSNA---LDTESLCILKGVSCWTIRADVHITDYDGNLIDASCIGVMAGLQHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMS 176
V D Q V DE + + P+ T GK I+DAT +EE
Sbjct: 165 DAVV-----KDGQVIVYGLDERVPAPLNITHKPLSVTFHTFDDGKLAILDATRKEEQASE 219
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ V I +N G +C + K G +D V + S+A
Sbjct: 220 ADVVIGMNNAGDVCYLSKFQGSPVDALVFITKTSLA 255
>WB|WBGene00018154 [details] [associations]
symbol:exos-9 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0000003 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:FO081316
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG2123
GeneTree:ENSGT00530000063093 KO:K12586 PIR:T28842
RefSeq:NP_741217.1 ProteinModelPortal:Q20128 SMR:Q20128
STRING:Q20128 PaxDb:Q20128 PRIDE:Q20128 EnsemblMetazoa:F37C12.13a.1
EnsemblMetazoa:F37C12.13a.2 EnsemblMetazoa:F37C12.13a.3
GeneID:176012 KEGG:cel:CELE_F37C12.13 UCSC:F37C12.13a.2 CTD:176012
WormBase:F37C12.13a HOGENOM:HOG000020941 InParanoid:Q20128
OMA:LESLCVA NextBio:890730 ArrayExpress:Q20128 Uniprot:Q20128
Length = 434
Score = 171 (65.3 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 54/199 (27%), Positives = 98/199 (49%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T V+A+V AE+ PS+M+P KG + I VD SP A E R G + EL L+
Sbjct: 50 IGNTKVMAAVSAEIAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSK-GMELIRLLEL 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + ID+ +L + GK W + +D ++ DG+LLD A AL + P
Sbjct: 109 IIRDSRC-----IDVEALCIRAGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRP 163
Query: 120 SVHVAAEAASDEQPEVDISDEEF----LQFDTSGVPVITT--LTKVGKHYIVDATLEEES 173
+V + +P + E+ + + +P+ TT L G+ ++D T +E +
Sbjct: 164 NVTL--------EPHHTLIYSEYEKAPVPLNIYHMPICTTIGLLDKGQIVVIDPTDKETA 215
Query: 174 QMSSAVSISINRQGHICGM 192
+ ++ ++ N++ +C +
Sbjct: 216 CLDGSIVVACNKRREVCAL 234
>FB|FBgn0030789 [details] [associations]
symbol:Rrp45 "Rrp45" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0000176
"nuclear exosome (RNase complex)" evidence=ISS] [GO:0000178
"exosome (RNase complex)" evidence=ISS] InterPro:IPR001247
Pfam:PF01138 EMBL:AE014298 GO:GO:0016787 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG2123
GeneTree:ENSGT00530000063093 KO:K03678 OMA:LESLCVA EMBL:AY089277
RefSeq:NP_573163.1 UniGene:Dm.19725 SMR:Q8T4A9 IntAct:Q8T4A9
STRING:Q8T4A9 EnsemblMetazoa:FBtr0074355 GeneID:32665
KEGG:dme:Dmel_CG9606 UCSC:CG9606-RA CTD:32665 FlyBase:FBgn0030789
InParanoid:Q8T4A9 OrthoDB:EOG495X81 GenomeRNAi:32665 NextBio:779732
Uniprot:Q8T4A9
Length = 412
Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 60/209 (28%), Positives = 94/209 (44%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A V E+G P+ +P++GK+ + V A ++ S +L+S L+
Sbjct: 56 MGDTKVLAQVTCEMGPPALSRPNEGKIHLNVYLGGVAFLDEAHTTHDQRSLKLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S IDL SL V K W + ++ V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRS-----IDLESLCVAVEKHVWCIRVNVNVLNHDGNLYDASTIATLAALMHFRRPD 170
Query: 121 V-HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSS 177
V + E ++ E EF+ PV T + K I+D TL EE+ S
Sbjct: 171 VWYKDGELRIFKKKE-----REFIPLLFHHYPVSVTYCVYKSSVQPILDPTLLEENAADS 225
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVIL 206
+ +S N +C + G + +I+
Sbjct: 226 VIVLSFNSFQELCSLTAGGTAPTNARIIM 254
>POMBASE|SPBC17D1.03c [details] [associations]
symbol:SPBC17D1.03c "exosome subunit Rrp43 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPBC17D1.03c InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0071035 GO:GO:0071038
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 KO:K12586 PIR:T39706 RefSeq:NP_596385.1
ProteinModelPortal:Q10205 STRING:Q10205 EnsemblFungi:SPBC17D1.03c.1
GeneID:2540189 KEGG:spo:SPBC17D1.03c OMA:ECINRAT OrthoDB:EOG4WHCW5
NextBio:20801321 Uniprot:Q10205
Length = 270
Score = 157 (60.3 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 57/212 (26%), Positives = 91/212 (42%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G + +KAE+ P P++G + ++ SP F+ +L+ +S L L
Sbjct: 66 GENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTL 125
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
+S I+L SL + E K W LY D + ++ DG+ D AA+ AAL +P+
Sbjct: 126 Q--QSNL---INLQSLCIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPT- 179
Query: 122 HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSAVS 180
A DE E I + V + V + D T EEE + ++
Sbjct: 180 -----AVWDEDLERVICASTLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLT 234
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
I +N +I +IK GG + P ++ I VA
Sbjct: 235 IMLNSSKNIVKIIKLGGTHIQPLLLKKCIEVA 266
>SGD|S000002688 [details] [associations]
symbol:RRP45 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071038
"nuclear polyadenylation-dependent tRNA catabolic process"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay" evidence=IC]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IGI;IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IC]
[GO:0034427 "nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'" evidence=IC] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR001247
SGD:S000002688 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730
EMBL:BK006938 GO:GO:0003723 GO:GO:0071035 GO:GO:0071038 EMBL:U51030
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176 GO:GO:0000177
GO:GO:0000467 GO:GO:0070651 GO:GO:0071042 GO:GO:0070478
GO:GO:0070481 GO:GO:0071051 Pfam:PF03725 eggNOG:COG2123
HOGENOM:HOG000229504 GeneTree:ENSGT00530000063093 KO:K03678
GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 PDB:2WP8 PDBsum:2WP8
OMA:LIDASCI OrthoDB:EOG4X0R2H EMBL:AY557748 PIR:S70136
RefSeq:NP_010566.1 ProteinModelPortal:Q05636 SMR:Q05636
DIP:DIP-2084N IntAct:Q05636 MINT:MINT-555570 STRING:Q05636
PaxDb:Q05636 PeptideAtlas:Q05636 EnsemblFungi:YDR280W GeneID:851874
KEGG:sce:YDR280W CYGD:YDR280w EvolutionaryTrace:Q05636
NextBio:969829 Genevestigator:Q05636 GermOnline:YDR280W
Uniprot:Q05636
Length = 305
Score = 150 (57.9 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 55/238 (23%), Positives = 105/238 (44%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRG--GEELSAELSSALQ 58
MG+T V + ++ +P +P +G I + SP A FE GE+ S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGED-EVLCSRIIE 109
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L +
Sbjct: 110 KSVR--RSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKK 164
Query: 119 PSVHVAAEA-----ASDEQP--------EVDISDEEFLQFDTSGVPVITTLTKVGKHYIV 165
P + V E ++ +P + ++ F DT T +++ I+
Sbjct: 165 PDITVHGEQIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEIS---II 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DATL+EE +++++N+ + + K GG+ +D ++ A + ++ D++
Sbjct: 222 DATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 279
>UNIPROTKB|Q8MPG3 [details] [associations]
symbol:EAP2 "Exosome-associated protein 2" species:5691
"Trypanosoma brucei" [GO:0000178 "exosome (RNase complex)"
evidence=IDA] InterPro:IPR001247 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG2123 EMBL:AJ430833
ProteinModelPortal:Q8MPG3 IntAct:Q8MPG3 STRING:Q8MPG3
HOGENOM:HOG000259881 ProtClustDB:CLSZ2439596 Uniprot:Q8MPG3
Length = 294
Score = 147 (56.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 47/201 (23%), Positives = 96/201 (47%)
Query: 9 SVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGA 68
+V G P + QPD+G++ + V A P F+ ++++A L + +S
Sbjct: 69 TVSGVFGPPPSDQPDEGRLTVDV-----AAPFFQSHSTDQVAAALREVARFV----RSTI 119
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
+ +DL+ L ++ G+ CW L ++ +++++DG L A A+ AA+ N +P +
Sbjct: 120 ISCMDLTELNIINGEACWVLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRL----- 174
Query: 129 SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK---HYIVDATLEEESQMSSAVSISINR 185
P D + L+F T V V + K+G +++D EES + +++ ++
Sbjct: 175 ----PNGDEVESRRLRFHTIPVAVTIGVYKLGASGVRFLMDTNAAEESVVDGLLTVVLSD 230
Query: 186 QGHICGMIKRGGVGLDPSVIL 206
+ I ++ G + S++L
Sbjct: 231 ENGIITFVQSGSYSIS-SLLL 250
>POMBASE|SPBC16G5.10 [details] [associations]
symbol:SPBC16G5.10 "exosome subunit Rrp42 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPBC16G5.10 Pfam:PF01138 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG2123 KO:K12589 PIR:T39602 RefSeq:NP_596759.1
ProteinModelPortal:O60124 STRING:O60124 EnsemblFungi:SPBC16G5.10.1
GeneID:2540116 KEGG:spo:SPBC16G5.10 OrthoDB:EOG4Q5CZP
NextBio:20801252 Uniprot:O60124
Length = 299
Score = 131 (51.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 54/200 (27%), Positives = 88/200 (44%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLL 62
S +++ VKAE+G + P+ GK V+ SP+ + + R +E+ + L+SALQ L
Sbjct: 56 SVEIVIGVKAEVGDAT---PEGGKYVASVEISPSV--SIQNRETDEIPSFLTSALQDLL- 109
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG---NLLDALGAAIKAALSNTGIP 119
+D L K W +++D +VI S N+L AL A AL T +P
Sbjct: 110 -----NALAVDY--LKFTPSKA-WIIHVDAVVILSSSPYENILSALSLAAYLALQTTRLP 161
Query: 120 SVHVA-----AEAASDEQP--EVDISDEEFLQFDTSGVP---VITTLTKVGKHYIVDATL 169
+ ++ +P E D+ E G+ VI ++ + + IVD T+
Sbjct: 162 KISTPNVTDITIGSTKYEPSEEYDVDSEWENALPLQGLELMSVIILVSSIDQVIIVDPTI 221
Query: 170 EEESQMSSAVSISINRQGHI 189
EE S +I + G I
Sbjct: 222 EESSVAQVTYAIGVQASGAI 241
>UNIPROTKB|F1RSQ6 [details] [associations]
symbol:EXOSC8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR001247 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GeneTree:ENSGT00530000063093 EMBL:CU024873
Ensembl:ENSSSCT00000010255 Uniprot:F1RSQ6
Length = 113
Score = 94 (38.1 bits), Expect = 0.00023, P = 0.00023
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSS 55
+G+T VI +KAE G P PDKG + VD SP F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFGAPPTDAPDKGYIVPNVDLSPLCSWRFRSGPPGEE--AQVAS 106
>SGD|S000002269 [details] [associations]
symbol:RRP42 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0016075 "rRNA catabolic
process" evidence=IMP] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0043628 "ncRNA 3'-end
processing" evidence=IC] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IC] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IC] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0071051 "polyadenylation-dependent
snoRNA 3'-end processing" evidence=IC] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0003674 "molecular_function" evidence=ND] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay" evidence=IC]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0070651 "nonfunctional rRNA
decay" evidence=IC] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR001247 SGD:S000002269 Pfam:PF01138 GO:GO:0005730
EMBL:BK006938 GO:GO:0003723 GO:GO:0071038 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:X95644 GO:GO:0000176 GO:GO:0000177
GO:GO:0000467 GO:GO:0070651 GO:GO:0071042 GO:GO:0070478
GO:GO:0070481 GO:GO:0071051 eggNOG:COG2123 KO:K12589
OrthoDB:EOG4Q5CZP EMBL:Z74159 PIR:S67653 RefSeq:NP_010172.1
ProteinModelPortal:Q12277 SMR:Q12277 DIP:DIP-1463N IntAct:Q12277
MINT:MINT-410864 STRING:Q12277 PaxDb:Q12277 EnsemblFungi:YDL111C
GeneID:851447 KEGG:sce:YDL111C CYGD:YDL111c HOGENOM:HOG000248003
OMA:SDGSECI NextBio:968699 Genevestigator:Q12277 GermOnline:YDL111C
Uniprot:Q12277
Length = 265
Score = 111 (44.1 bits), Expect = 0.00031, P = 0.00031
Identities = 43/161 (26%), Positives = 82/161 (50%)
Query: 43 GRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLL 102
G+ + L E ++L + +L KSG+G +D S L + + K + +++D LVISS + +
Sbjct: 84 GQRDDALVVETITSLLNKVL--KSGSG--VDSSKLQLTK-KYSFKIFVDVLVISSHSHPV 138
Query: 103 DALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH 162
+ AI +AL++T +P + A + E+ D + ++ D + P++ L VG +
Sbjct: 139 SLISFAIYSALNSTYLPKLISAFDDLEVEELPT-FHDYDMVKLDINP-PLVFILAVVGNN 196
Query: 163 YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPS 203
++D E ++ + IS + G I I+ V L+ S
Sbjct: 197 MLLDPAANESEVANNGLIISWSN-GKITSPIR--SVALNDS 234
>UNIPROTKB|G5EI70 [details] [associations]
symbol:MGCH7_ch7g406 "Exosome complex exonuclease RRP43"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001247 Pfam:PF01138
GO:GO:0004527 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:CM000230
EMBL:CM001237 RefSeq:XP_003721099.1 ProteinModelPortal:G5EI70
EnsemblFungi:MGG_15024T0 GeneID:12984895 KEGG:mgr:MGG_15024
Uniprot:G5EI70
Length = 357
Score = 108 (43.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 44/150 (29%), Positives = 63/150 (42%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDE 140
E K W L+ID L IS DGN D A+ AAL +T +P+ A DE E+ +
Sbjct: 202 ETKAFWTLFIDVLFISFDGNPFDVAWTAVLAALRDTKLPA------AKWDEDREMVLCSR 255
Query: 141 EF--LQFDTSGVPVITTLTKV----------GKHY--IVDATLEEESQMSSAVSISINRQ 186
+ SG PV T V G Y +VD EE VS+ ++ +
Sbjct: 256 QAPAKPLGVSGFPVACTAAVVRRRRDDPDVAGDQYWVLVDPDRSEEELCDEFVSVVVDSE 315
Query: 187 G----HICGMIKRGGVGLDPSVILDMISVA 212
G I ++K GG I ++++A
Sbjct: 316 GGDGTKILSLLKLGGTSAGMEFINRLVTLA 345
Score = 40 (19.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGR 44
G T VI V+AE+ P A P+ A+ D A T GR
Sbjct: 74 GDTTVICGVRAEI-LPVASIPNYR--ALEDDAGTLAAGTERGR 113
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 237 223 0.00098 112 3 11 23 0.44 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 39
No. of states in DFA: 584 (62 KB)
Total size of DFA: 148 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.28u 0.10s 20.38t Elapsed: 00:00:01
Total cpu time: 20.28u 0.10s 20.38t Elapsed: 00:00:01
Start: Fri May 10 17:44:33 2013 End: Fri May 10 17:44:34 2013