BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026528
(237 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578727|ref|XP_002530222.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
gi|223530269|gb|EEF32169.1| exosome complex exonuclease rrp42, putative [Ricinus communis]
Length = 287
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/237 (84%), Positives = 217/237 (91%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELGRP+A QPDKGKVAIFVDCSP AEPTFE RGGEELSAELS+ALQHC
Sbjct: 51 IGATEVIASVKAELGRPNAFQPDKGKVAIFVDCSPVAEPTFEARGGEELSAELSAALQHC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGIDLSSLVV EGK+CWDLYIDGLV+S DGNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGAGAGIDLSSLVVAEGKICWDLYIDGLVVSFDGNLLDALGAAIKAALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
VHVAA DEQPEVDISDEEFLQFDTSGVPVI TLTKVG+HYIVDAT EEES MSSAVS
Sbjct: 171 VHVAAGGLGDEQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESYMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
+SINR+GHICG+ KRGG G+DPSVI D+ISVA +S QL++KLDSEIAAA+A EDES
Sbjct: 231 VSINRKGHICGLTKRGGAGIDPSVISDIISVAQHISEQLINKLDSEIAAAEAGEDES 287
>gi|224131852|ref|XP_002321194.1| predicted protein [Populus trichocarpa]
gi|222861967|gb|EEE99509.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/236 (83%), Positives = 217/236 (91%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELGRP+A+QPDKGKVAIFVDCSP AEP FEGRGGEELSAELS ALQ C
Sbjct: 51 IGATEVIASVKAELGRPNALQPDKGKVAIFVDCSPVAEPMFEGRGGEELSAELSVALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGIDLSSL+V EGK+CWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGAGAGIDLSSLIVAEGKICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPR 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V VAA A+ DEQPEVDISDEEF+QFDTSGVPVI TLTKVG+HYIVDAT EEESQMSSAVS
Sbjct: 171 VQVAAGASGDEQPEVDISDEEFMQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
+SI+R+G ICG+ KRG GLDPSVI DMISVA +S QL++KLDSEI+AA+ADEDE
Sbjct: 231 VSISRKGQICGLSKRGSAGLDPSVISDMISVARHISEQLINKLDSEISAAEADEDE 286
>gi|449477436|ref|XP_004155022.1| PREDICTED: exosome complex component RRP42-like [Cucumis sativus]
Length = 286
Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/236 (82%), Positives = 217/236 (91%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T+VIA+VKAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+ C
Sbjct: 51 MGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSG+GAGIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGSGAGIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
VHVAAEA +EQPEVD+SDEEFLQFDTSGVP I TLTKVGKHYIVDATLEEESQMSSAVS
Sbjct: 171 VHVAAEALDNEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATLEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
ISI+R GHICG+ KRGGVG+DPS+ILDMISV VS +L++KLDSEI AA+ADE+E
Sbjct: 231 ISIDRHGHICGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVAAEADEEE 286
>gi|356498705|ref|XP_003518190.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
Length = 286
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/235 (82%), Positives = 218/235 (92%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG+TDVIASVKAELG+PS +QPDKGKV+I++DCS TAEP FEGRGG+EL+AELS+ALQHC
Sbjct: 51 MGATDVIASVKAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSNALQHC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSG GAGIDLSSL+VVEGK+CWDLYIDGLV+SSDGNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGEGAGIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPR 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V VAA ++DE PEVD+SDEEFLQFDTS VPVI TLTKVG+HYIVDAT EEESQMSS VS
Sbjct: 171 VEVAAGTSNDEHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSGVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADED 235
IS+NRQGHICG+ KRGGVGLDPS+ILDMISVA VS QL++KLDSEIA+A+ADE+
Sbjct: 231 ISVNRQGHICGITKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEIASAEADEE 285
>gi|297829330|ref|XP_002882547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328387|gb|EFH58806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/237 (81%), Positives = 215/237 (90%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAE+GRPS++QPDKGKVA+F+DCSPTAEPTF GRGGEELS+EL+ ALQ C
Sbjct: 51 IGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGI+LSSL++ EGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL+NT IP
Sbjct: 111 LLGGKSGAGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V+AE A DEQPE+DISDEE+LQFDTS VPVI TLTKVG HYIVDAT EEESQMSSAVS
Sbjct: 171 VNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
IS+NR GHICG+ KRGG GLDPSVILDMISVA V+ LM KLDSEI+AA+A +DES
Sbjct: 231 ISVNRAGHICGLTKRGGSGLDPSVILDMISVAKHVTENLMSKLDSEISAAEAADDES 287
>gi|18398046|ref|NP_566318.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|30680427|ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|11762184|gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana]
gi|26453010|dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis thaliana]
gi|56744222|gb|AAW28551.1| At3g07750 [Arabidopsis thaliana]
gi|332641077|gb|AEE74598.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|332641078|gb|AEE74599.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 286
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/237 (81%), Positives = 214/237 (90%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAE+GRPS++QPDKGKVA+F+DCSPTAEPTF GRGGEELS+EL+ ALQ C
Sbjct: 50 IGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGI+LSSL++ EGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL+NT IP
Sbjct: 110 LLGGKSGAGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPK 169
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V+AE A DEQPE+DISDEE+LQFDTS VPVI TLTKVG HYIVDAT EEESQMSSAVS
Sbjct: 170 VNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVS 229
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
IS+NR GHICG+ KR G GLDPSVILDMISVA V+ LM KLDSEI+AA+A EDES
Sbjct: 230 ISVNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACEDES 286
>gi|356559534|ref|XP_003548054.1| PREDICTED: exosome complex component RRP42-like [Glycine max]
Length = 286
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/224 (83%), Positives = 208/224 (92%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG+TDVIASVKAELG+PS +QPDKGKV+I+VDCS TAEP FEGRGG+EL+AELS+ALQ C
Sbjct: 51 MGATDVIASVKAELGKPSLLQPDKGKVSIYVDCSSTAEPAFEGRGGDELAAELSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGIDLSSL+VVEGK+CWDLYIDGLV+SSDGNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGAGAGIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPR 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V VAA ++DE PEVD+SDEEFLQFDTS VPVI TLTKVG+HYIVDAT EEESQMSSAVS
Sbjct: 171 VQVAAGTSNDEHPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
IS+NRQGHICG+ KRGGVGLDPS+ILDMISVA VS QL++KLD
Sbjct: 231 ISVNRQGHICGITKRGGVGLDPSIILDMISVAKHVSEQLINKLD 274
>gi|357518287|ref|XP_003629432.1| Exosome complex exonuclease RRP42 [Medicago truncatula]
gi|355523454|gb|AET03908.1| Exosome complex exonuclease RRP42 [Medicago truncatula]
Length = 286
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/237 (80%), Positives = 215/237 (90%), Gaps = 1/237 (0%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+PS MQPDKGKV+I++DCS TAEP FEGRG + LSA+LS+ALQ C
Sbjct: 51 IGATEVIASVKAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGA ID SSLVVVEGK+CWDLYIDGLV+SSDGNLLD LGAAIK ALSNTGIP
Sbjct: 111 LLGAKSGAGAAIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V +AA A+SDEQPEVD+SDE+F+QFDTSG+PVI TLTKVGKHYIVDAT EEESQMSSAVS
Sbjct: 171 VQIAAGASSDEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
ISINRQGHICG+ KRGG GLDPSVILDM+SVA VS QL++KLDSEIA+A+A EDES
Sbjct: 231 ISINRQGHICGVTKRGGAGLDPSVILDMVSVAKHVSEQLINKLDSEIASAEA-EDES 286
>gi|6648187|gb|AAF21185.1|AC013483_9 putative 3' exoribonuclease [Arabidopsis thaliana]
Length = 293
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/244 (79%), Positives = 214/244 (87%), Gaps = 7/244 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAE+GRPS++QPDKGKVA+F+DCSPTAEPTF GRGGEELS+EL+ ALQ C
Sbjct: 50 IGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRC 109
Query: 61 LLGGKSGA-------GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
LLGGKSGA GAGI+LSSL++ EGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL
Sbjct: 110 LLGGKSGAAIHVLVPGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 169
Query: 114 SNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
+NT IP V+V+AE A DEQPE+DISDEE+LQFDTS VPVI TLTKVG HYIVDAT EEES
Sbjct: 170 TNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEES 229
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
QMSSAVSIS+NR GHICG+ KR G GLDPSVILDMISVA V+ LM KLDSEI+AA+A
Sbjct: 230 QMSSAVSISVNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEAC 289
Query: 234 EDES 237
EDES
Sbjct: 290 EDES 293
>gi|388522149|gb|AFK49136.1| unknown [Lotus japonicus]
Length = 286
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/235 (80%), Positives = 216/235 (91%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG+T+VIASVKAELG+PS +QPDKGKV+I++DCS TAEP FEGRGG++LSAELS ALQ
Sbjct: 51 MGATEVIASVKAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRS 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGAGIDLSSL+VVEGK+CWDLYIDGLV+SSDGNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGAKSGAGAGIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPR 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V VAA A+ DE+PEV+ISD+EFLQFDTSGVPVI TLTKVG+H IVDAT EEESQMSSAVS
Sbjct: 171 VQVAAGASGDEKPEVEISDDEFLQFDTSGVPVIVTLTKVGRHSIVDATSEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADED 235
IS+NRQGHICG+ KRG VGLDPS++LDMISVA VS QL++KLDSEIA+A+A++D
Sbjct: 231 ISVNRQGHICGITKRGSVGLDPSIVLDMISVAKHVSEQLINKLDSEIASAEAEDD 285
>gi|6466958|gb|AAF13093.1|AC009176_20 hypothetical protein [Arabidopsis thaliana]
Length = 297
Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/248 (77%), Positives = 214/248 (86%), Gaps = 11/248 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAE+GRPS++QPDKGKVA+F+DCSPTAEPTF GRGGEELS+EL+ ALQ C
Sbjct: 50 IGGTDVIASVKAEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRC 109
Query: 61 LLGGKSGAG-----------AGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAI 109
LLGGKSGAG AGI+LSSL++ EGKVCWDLYIDGLVISSDGNLLDALGAAI
Sbjct: 110 LLGGKSGAGLQSSIHVLVPGAGINLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAI 169
Query: 110 KAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATL 169
KAAL+NT IP V+V+AE A DEQPE+DISDEE+LQFDTS VPVI TLTKVG HYIVDAT
Sbjct: 170 KAALTNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATA 229
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
EEESQMSSAVSIS+NR GHICG+ KR G GLDPSVILDMISVA V+ LM KLDSEI+A
Sbjct: 230 EEESQMSSAVSISVNRTGHICGLTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISA 289
Query: 230 ADADEDES 237
A+A EDES
Sbjct: 290 AEACEDES 297
>gi|388511583|gb|AFK43853.1| unknown [Medicago truncatula]
Length = 286
Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/237 (80%), Positives = 215/237 (90%), Gaps = 1/237 (0%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+PS MQPDKGKV+I++DCS TAEP FEGRG + LSA+LS+ALQ C
Sbjct: 51 IGATEVIASVKAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGA ID SSLVVVEGK+CWDLYIDGLV+SSDGNLLD LGAAIK ALSNTGIP
Sbjct: 111 LLGAKSGAGAAIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V +AA A+SDEQPEVD+SDE+F+QFDTSG+PVI TLTKVG+HYIVDAT EEESQMSSAVS
Sbjct: 171 VQIAAGASSDEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGEHYIVDATPEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
ISINRQGHICG+ KRGG GLDPSVILDM+SVA VS QL++KLDSEIA+A+A EDES
Sbjct: 231 ISINRQGHICGVTKRGGAGLDPSVILDMVSVAKHVSEQLINKLDSEIASAEA-EDES 286
>gi|217073740|gb|ACJ85230.1| unknown [Medicago truncatula]
Length = 286
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/237 (80%), Positives = 215/237 (90%), Gaps = 1/237 (0%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+PS MQPDKGKV+I++DCS TAEP FEGRG + LSA+LS+ALQ C
Sbjct: 51 IGATEVIASVKAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGA ID SSLVVVEGK+CWDLYIDGLV+SSDGNLLD LGAAIK ALS+TGIP
Sbjct: 111 LLGAKSGAGAAIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSSTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V +AA A+SDEQPEVD+SDE+F+QFDTSG+PVI TLTKVGKHYIVDAT EEESQMSSAVS
Sbjct: 171 VQIAAGASSDEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
ISINRQGHICG+ KRGG GLDPSVILDM+SVA VS QL++KLDSEIA+A+A EDES
Sbjct: 231 ISINRQGHICGVTKRGGAGLDPSVILDMVSVAKHVSEQLINKLDSEIASAEA-EDES 286
>gi|388514143|gb|AFK45133.1| unknown [Medicago truncatula]
Length = 286
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/237 (80%), Positives = 213/237 (89%), Gaps = 1/237 (0%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+PS MQPDKGKV+I++DCS TAEP FEGRG + LSA+LS+ALQ C
Sbjct: 51 IGATEVIASVKAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGA ID SSLVVVEGK+CWDLYIDGLV+SSDGNLLD LGAAIK ALSNTGIP
Sbjct: 111 LLGAKSGAGAAIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V +AA A+SDEQPEVD+SDE+F+QFDTSG+PVI TLTKVGKHYIVDAT EEESQMSS VS
Sbjct: 171 VQIAAGASSDEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSSTVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
ISINRQGHICG+ KRGG GLDPSVILDM+SVA VS QL++KLDSEIA A+A EDES
Sbjct: 231 ISINRQGHICGVTKRGGAGLDPSVILDMVSVAKHVSEQLINKLDSEIAFAEA-EDES 286
>gi|217073628|gb|ACJ85174.1| unknown [Medicago truncatula]
Length = 286
Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/237 (79%), Positives = 212/237 (89%), Gaps = 1/237 (0%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+PS MQPDKGKV+I++DCS TAEP FEGRG + LSA+LS+ALQ C
Sbjct: 51 IGATEVIASVKAELGKPSLMQPDKGKVSIYIDCSSTAEPAFEGRGADWLSADLSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLG KSGAGA ID SSLVVVEGK+CWDLYIDGLV+SSDGNLLD LGAAIK ALSNTGIP
Sbjct: 111 LLGAKSGAGAAIDRSSLVVVEGKICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V +AA A+SDEQPEVD+SDE+F+QFDTSG+PVI TLTKVGKHYIVDAT EEESQMS VS
Sbjct: 171 VQIAAGASSDEQPEVDVSDEDFMQFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSFTVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
ISINRQGHICG+ KRGG GLDPSVILDM+SVA VS QL++KLDSEIA A+A EDES
Sbjct: 231 ISINRQGHICGVTKRGGAGLDPSVILDMVSVAKHVSEQLINKLDSEIAFAEA-EDES 286
>gi|225430430|ref|XP_002285435.1| PREDICTED: exosome complex component RRP42 [Vitis vinifera]
gi|296082105|emb|CBI21110.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/237 (83%), Positives = 214/237 (90%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAELG+PS QPDKGKV I+VDCSPTA P FEGRGGEELS ELS ALQHC
Sbjct: 51 LGGTDVIASVKAELGKPSPSQPDKGKVNIYVDCSPTAAPMFEGRGGEELSTELSGALQHC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLV+SSDGNLLDALGAAIKAAL+NTGIP
Sbjct: 111 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V VA A+ D PEVDISD+E+LQFDTSGVPVI TLTKVG+HYIVDATLEEESQMSSAVS
Sbjct: 171 VEVAVGASGDGLPEVDISDDEYLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
+S++ QG ICG+IKRGG GLDPSVILDMISVA VS QLM+KLDSEI+AA+A E+ES
Sbjct: 231 VSVSGQGRICGLIKRGGAGLDPSVILDMISVAKHVSEQLMNKLDSEISAAEAFEEES 287
>gi|195620544|gb|ACG32102.1| exosome complex exonuclease RRP42 [Zea mays]
gi|413935080|gb|AFW69631.1| exosome complex exonuclease RRP42 isoform 1 [Zea mays]
gi|413935081|gb|AFW69632.1| exosome complex exonuclease RRP42 isoform 2 [Zea mays]
gi|413935082|gb|AFW69633.1| exosome complex exonuclease RRP42 isoform 3 [Zea mays]
gi|413935083|gb|AFW69634.1| exosome complex exonuclease RRP42 isoform 4 [Zea mays]
Length = 287
Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/225 (80%), Positives = 200/225 (88%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD+IASVKAELG+PS + PDKGKVAIFVDCSPTAEP FEGRG EELSAELS +LQ C
Sbjct: 51 LGATDIIASVKAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLDAL AIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V+ AASDE+PEVD+SDEEFLQFDTSGVPVI TLTKVG+HYIVDAT EEESQMSSAVS
Sbjct: 171 VNVSVSAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+S+NR G ICG+ KRGG GLDPSVI DMISVA VS+Q + LDS
Sbjct: 231 VSVNRHGQICGLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDS 275
>gi|363543527|ref|NP_001241774.1| exosome complex exonuclease RRP42 [Zea mays]
gi|195636336|gb|ACG37636.1| exosome complex exonuclease RRP42 [Zea mays]
Length = 287
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/225 (79%), Positives = 200/225 (88%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T++IASVKAELG+PS + PDKGKVAIFVDCSPTAEP FEGRG EELSAELS +LQ C
Sbjct: 51 LGATEIIASVKAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLDAL AIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V+ AASDE+PEVD+SDEEFLQFDTSGVPVI TLTKVG+HYIVDAT EEESQMSSAVS
Sbjct: 171 VNVSVSAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+S+NR G ICG+ KRGG GLDPSVI DMISVA VS+Q + LDS
Sbjct: 231 VSVNRHGQICGLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDS 275
>gi|194707850|gb|ACF88009.1| unknown [Zea mays]
gi|223975603|gb|ACN31989.1| unknown [Zea mays]
gi|413935071|gb|AFW69622.1| exosome complex exonuclease RRP42 isoform 1 [Zea mays]
gi|413935072|gb|AFW69623.1| exosome complex exonuclease RRP42 isoform 2 [Zea mays]
gi|413935073|gb|AFW69624.1| exosome complex exonuclease RRP42 isoform 3 [Zea mays]
Length = 287
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/225 (79%), Positives = 200/225 (88%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T++IASVKAELG+PS + PDKGKVAIFVDCSPTAEP FEGRG EELSAELS +LQ C
Sbjct: 51 LGATEIIASVKAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLDAL AIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAVAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V+ AASDE+PEVD+SDEEFLQFDTSGVPVI TLTKVG+HYIVDAT EEESQMSSAVS
Sbjct: 171 VNVSVSAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+S+NR G ICG+ KRGG GLDPSVI DMISVA VS+Q + LDS
Sbjct: 231 VSVNRHGQICGLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDS 275
>gi|242097164|ref|XP_002439072.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
gi|241917295|gb|EER90439.1| hypothetical protein SORBIDRAFT_10g031070 [Sorghum bicolor]
Length = 286
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/225 (79%), Positives = 200/225 (88%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T++IASVKAELG+PS + PDKGKV+IFVDCSPTAEP FEGRG EELSAELS +LQ C
Sbjct: 51 LGATEIIASVKAELGKPSILHPDKGKVSIFVDCSPTAEPMFEGRGSEELSAELSVSLQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+VVEGKVCWDLYIDGLV+SSDGNLLDAL AAIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V+ AASDE+PEVD+SDEEFLQFDTS VPVI TLTKVG+HYIVDAT EEESQMSSAVS
Sbjct: 171 VNVSVNAASDEEPEVDVSDEEFLQFDTSSVPVIITLTKVGRHYIVDATSEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+S+NR G ICG+ KRGG GLDPSVI DMISVA VS+Q + LDS
Sbjct: 231 VSVNRNGQICGLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDS 275
>gi|357122793|ref|XP_003563099.1| PREDICTED: exosome complex component RRP42-like [Brachypodium
distachyon]
Length = 286
Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 179/236 (75%), Positives = 206/236 (87%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+P+ + PDKGKV+I+VDCSPTA P FEGRG E+LSAELS ALQ C
Sbjct: 51 LGATEVIASVKAELGKPTVLHPDKGKVSIYVDCSPTAAPIFEGRGSEDLSAELSVALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+V+EGK CWDLYIDGLV+SSDGNLLDAL AAIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVLEGKACWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V+ A +D +PEVD+SDEEFLQFDTS VPVI TLTKVGKHYIVDAT EEESQMSSAVS
Sbjct: 171 VNVSLNAETDGEPEVDVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
+S+NR+G ICG+ KRGG GLDP+VI DMISVA VS++ + LDSEIAAA+A DE
Sbjct: 231 VSVNRRGQICGLTKRGGAGLDPTVIFDMISVAKHVSQRFISLLDSEIAAAEAVMDE 286
>gi|242083100|ref|XP_002441975.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
gi|241942668|gb|EES15813.1| hypothetical protein SORBIDRAFT_08g006250 [Sorghum bicolor]
Length = 287
Score = 366 bits (939), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 177/225 (78%), Positives = 201/225 (89%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T++IASVKAELG+PS + PDKGKV+IFVDCSPTAEP FEGRG EELSAELS+ALQ C
Sbjct: 52 LGVTEIIASVKAELGKPSILHPDKGKVSIFVDCSPTAEPMFEGRGSEELSAELSAALQRC 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSG+GA IDLSSL+VVEGKVCWDLYIDGLV+SSDGNLLDAL AAIK ALS+TGIP
Sbjct: 112 LLGGKSGSGAAIDLSSLIVVEGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPK 171
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V+ AAS+E+PEV++SDEEFLQFDTSGVPVI TLTKVG+HYIVDAT EEESQ SSAVS
Sbjct: 172 VNVSVSAASEEEPEVNVSDEEFLQFDTSGVPVIITLTKVGRHYIVDATSEEESQTSSAVS 231
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+S+NR G ICG+ KRGG GLDPSVILDM+SVA VS+Q + LDS
Sbjct: 232 VSVNRHGQICGLSKRGGAGLDPSVILDMLSVAKHVSQQFISLLDS 276
>gi|115488270|ref|NP_001066622.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|108862543|gb|ABA97522.2| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113649129|dbj|BAF29641.1| Os12g0403800 [Oryza sativa Japonica Group]
gi|215693833|dbj|BAG89032.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641114|gb|EEE69246.1| hypothetical protein OsJ_28497 [Oryza sativa Japonica Group]
Length = 284
Score = 365 bits (938), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 179/234 (76%), Positives = 201/234 (85%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIA+VKAELG+PS + PDKGKV+IFVDCSPTA P FEGRG EE SAEL ALQ C
Sbjct: 51 LGATEVIATVKAELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLDAL AAIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V+ A +DE+PEV++SDEEFLQFDTS VPVI TLTKVGKHYIVDAT EEESQMSSAVS
Sbjct: 171 VNVSLSATTDEEPEVNVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
+S+NR G I G+ KRGG GLDPSVI DMISVA VSRQ + LDSE AA+A E
Sbjct: 231 VSVNRHGQIRGLTKRGGAGLDPSVIFDMISVAKHVSRQFISVLDSETLAAEAAE 284
>gi|357145083|ref|XP_003573518.1| PREDICTED: exosome complex component RRP42-like [Brachypodium
distachyon]
Length = 286
Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 174/236 (73%), Positives = 205/236 (86%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+VIASVKAELG+P+ + PDKGKV+I+VDCSPTA P FEGRG E+LSAELS ALQ C
Sbjct: 51 LGATEVIASVKAELGKPTVLHPDKGKVSIYVDCSPTAAPIFEGRGSEDLSAELSVALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSGAGA IDLSSL+V+EGK CWDLY+DGLV+SSDGNL+DAL AAIK ALS+TGIP
Sbjct: 111 LLGGKSGAGAAIDLSSLIVLEGKACWDLYVDGLVVSSDGNLVDALAAAIKVALSDTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V+ A +D +PEVD+SDEEFLQFDTS VPVI TLTKVGKHYIVDAT EEESQMSSA+S
Sbjct: 171 VNVSLNAETDGEPEVDVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSALS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
+S+NR+G ICG+ KRGG GLDP++I DMISVA VS++ + LDSEIAAA+ DE
Sbjct: 231 VSVNRRGQICGLTKRGGTGLDPTIIFDMISVAKHVSQRFISLLDSEIAAAEVVADE 286
>gi|356553448|ref|XP_003545068.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP42-like [Glycine max]
Length = 273
Score = 322 bits (825), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 161/217 (74%), Positives = 185/217 (85%), Gaps = 9/217 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG+TDVIAS KA LG+PS +QPDK KV+I++DCS TAEP FEGRGG+EL+AELS+ALQ C
Sbjct: 51 MGATDVIASAKAVLGKPSLLQPDKXKVSIYIDCSSTAEPAFEGRGGDELAAELSNALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDAL--GAAIKAALSNTGI 118
LLGGKSGAGA I LSSL+VVEGK+CWDLYIDGL+++SDGNLLDAL + IKAALSNTGI
Sbjct: 111 LLGGKSGAGARIGLSSLIVVEGKICWDLYIDGLLVNSDGNLLDALIEXSTIKAALSNTGI 170
Query: 119 PSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV------GKHYIVDATLEEE 172
P V VAA ++DEQPEVD+S+EEFLQFDTSGVPVI TL KV G+HYIVDAT EEE
Sbjct: 171 PRVQVAAGTSNDEQPEVDVSNEEFLQFDTSGVPVIVTLAKVTCMLGLGRHYIVDATSEEE 230
Query: 173 SQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMI 209
SQ+SSAV S+NRQGHICG+ KRGGVGLDPS IL +
Sbjct: 231 SQISSAVX-SVNRQGHICGITKRGGVGLDPSTILQLF 266
>gi|147770895|emb|CAN74168.1| hypothetical protein VITISV_005208 [Vitis vinifera]
Length = 305
Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/229 (73%), Positives = 180/229 (78%), Gaps = 32/229 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVIASVKAELG+PS QPDKGK GRGGEELS ELS ALQHC
Sbjct: 51 LGGTDVIASVKAELGKPSPSQPDKGK----------------GRGGEELSTELSGALQHC 94
Query: 61 LLGGKSGA-----------GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAI 109
LLGGKSGA GAGIDLSSLVVVEGKVCWDLYIDGLV+SSDGNLLDALGAAI
Sbjct: 95 LLGGKSGAVGDMEVLTNVLGAGIDLSSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAI 154
Query: 110 KAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK-----VGKHYI 164
KAAL+NTGIP V VA A+ D PEVDISD+E+LQFDTSGVPVI TLTK VG+HYI
Sbjct: 155 KAALTNTGIPKVEVAVGASGDGLPEVDISDDEYLQFDTSGVPVIVTLTKVAQYHVGRHYI 214
Query: 165 VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
VDATLEEESQMSSAVS+S++ QG ICG+IKRGG GLDPSVILDMISVA
Sbjct: 215 VDATLEEESQMSSAVSVSVSGQGRICGLIKRGGAGLDPSVILDMISVAK 263
>gi|168041870|ref|XP_001773413.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675289|gb|EDQ61786.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 287
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/237 (59%), Positives = 175/237 (73%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ SVKAELG P +P G + I V+CSPTA P FEGRGGEELS EL+ L+
Sbjct: 51 VGGTDVMVSVKAELGNPPKGRPSHGGMQIKVECSPTANPEFEGRGGEELSLELTRGLERS 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LGG +G+GA IDLS+L +V+GK CW L IDGLV+SSDGNLLDAL A+KAAL NTG+P
Sbjct: 111 FLGGPNGSGAAIDLSTLRIVDGKTCWVLCIDGLVLSSDGNLLDALSIAVKAALRNTGLPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V V A A DE PE+++ DEE Q D S PVI TLTKVGK Y VDAT EEES M SAVS
Sbjct: 171 VEVVAGGAEDEDPEIEVDDEESSQLDVSNAPVIITLTKVGKSYFVDATAEEESHMRSAVS 230
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
+++NR+G +CG+ KRGG GL+PS I+DMISVA ++ + LD +IAAA++ + +S
Sbjct: 231 VAVNRKGVVCGVTKRGGEGLEPSTIIDMISVAQQIALTYIPALDLQIAAAESVDPDS 287
>gi|413935075|gb|AFW69626.1| hypothetical protein ZEAMMB73_456689, partial [Zea mays]
gi|413935078|gb|AFW69629.1| hypothetical protein ZEAMMB73_937743, partial [Zea mays]
Length = 209
Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 140/182 (76%), Positives = 154/182 (84%), Gaps = 1/182 (0%)
Query: 44 RGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
R L A L S LQ CLLGGKSGAGA IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLD
Sbjct: 17 RRRHRLRAPLLS-LQRCLLGGKSGAGAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLD 75
Query: 104 ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY 163
AL AIK ALS+TGIP V+V+ AASDE+PEVD+SDEEFLQFDTSGVPVI TLTKVG+HY
Sbjct: 76 ALAVAIKVALSDTGIPKVNVSVSAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHY 135
Query: 164 IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
IVDAT EEESQMSSAVS+S+NR G ICG+ KRGG GLDPSVI DMISVA VS+Q + L
Sbjct: 136 IVDATSEEESQMSSAVSVSVNRHGQICGLTKRGGAGLDPSVIFDMISVAKHVSQQFISLL 195
Query: 224 DS 225
DS
Sbjct: 196 DS 197
>gi|302786484|ref|XP_002975013.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
gi|300157172|gb|EFJ23798.1| hypothetical protein SELMODRAFT_102800 [Selaginella moellendorffii]
Length = 288
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/233 (58%), Positives = 177/233 (75%), Gaps = 4/233 (1%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVI SVKAELG P + +P+ G + + V+CS TA P FEGRGGE+L+ ELS ALQ C
Sbjct: 51 LGGTDVIVSVKAELGSPRSGRPNYGSIEVMVECSATAGPEFEGRGGEDLNMELSRALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+GG SGAGA IDLS+L +V K CW+L++D LV++SDGNLLDAL +I AALSNTGIPS
Sbjct: 111 FVGGPSGAGAAIDLSTLGIVASKFCWELFVDCLVVNSDGNLLDAL--SIGAALSNTGIPS 168
Query: 121 VHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V AS++ ++++ D +EF + D S VP+I TLTK+G+HYIVDAT EEE MSSA
Sbjct: 169 VKVTGNTASEDDADLEVGDNPDEFARLDASKVPLIITLTKIGRHYIVDATPEEEMGMSSA 228
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
VS+++N +G I G+ KRG GLDPSV+ DMISVA ++R L+ +D+EIAAA+
Sbjct: 229 VSVAVNSKGLILGLTKRGDGGLDPSVVTDMISVAKHIARDLIVLVDTEIAAAE 281
>gi|302791331|ref|XP_002977432.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
gi|300154802|gb|EFJ21436.1| hypothetical protein SELMODRAFT_106958 [Selaginella moellendorffii]
Length = 288
Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 135/233 (57%), Positives = 177/233 (75%), Gaps = 4/233 (1%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD+I SVKAELG P + +P+ G + + V+CS TA P FEGRGGE+L+ ELS ALQ C
Sbjct: 51 LGGTDLIVSVKAELGSPRSCRPNYGSIEVMVECSATAGPEFEGRGGEDLNMELSRALQRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+GG SGAGA IDLS+L +V K CW+L++D LV++SDGNLLDAL +I AALSNTGIPS
Sbjct: 111 FVGGPSGAGAAIDLSTLGIVASKFCWELFVDCLVVNSDGNLLDAL--SIGAALSNTGIPS 168
Query: 121 VHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V AS++ ++++ D +EF + D S VP+I TLTK+G+HYIVDAT EEE MSSA
Sbjct: 169 VKVTGNTASEDDADLEVGDNPDEFARLDASKVPLIITLTKIGRHYIVDATPEEEMGMSSA 228
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
VS+++N +G I G+ KRG GLDPSV+ DMISVA ++R L+ +D+EIAAA+
Sbjct: 229 VSVAVNSKGLILGLTKRGDGGLDPSVVTDMISVAKHIARDLIVLVDTEIAAAE 281
>gi|223972967|gb|ACN30671.1| unknown [Zea mays]
Length = 193
Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 127/181 (70%), Positives = 144/181 (79%), Gaps = 8/181 (4%)
Query: 53 LSSALQH--------CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA 104
++ LQH + GK A IDLSSL+VV+GKVCWDLYIDGLV+SSDGNLLDA
Sbjct: 1 MTDQLQHQHRFYHPTSIFAGKQRAQQTIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDA 60
Query: 105 LGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI 164
L AIK ALS+TGIP V+V+ AASDE+PEVD+SDEEFLQFDTSGVPVI TLTKVG+HYI
Sbjct: 61 LAVAIKVALSDTGIPKVNVSVSAASDEEPEVDVSDEEFLQFDTSGVPVIITLTKVGRHYI 120
Query: 165 VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
VDAT EEESQMSSAVS+S+NR G ICG+ KRGG GLDP VI DMISVA VS+Q + LD
Sbjct: 121 VDATSEEESQMSSAVSVSVNRHGQICGLTKRGGAGLDPGVIFDMISVAKHVSQQFISLLD 180
Query: 225 S 225
S
Sbjct: 181 S 181
>gi|449467882|ref|XP_004151651.1| PREDICTED: exosome complex exonuclease RRP42-like, partial [Cucumis
sativus]
Length = 195
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/145 (84%), Positives = 135/145 (93%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T+VIA+VKAELGRP+ MQPDKGKV+I VDCSPTAEP FEGRGGEELS ELS AL+ C
Sbjct: 51 MGGTEVIATVKAELGRPNPMQPDKGKVSISVDCSPTAEPAFEGRGGEELSTELSIALERC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LLGGKSG+GAGIDLSSL+VVEGK+CWDLYI+GLV+SS+GNLLDALGAAIKAALSNTGIP
Sbjct: 111 LLGGKSGSGAGIDLSSLIVVEGKLCWDLYIEGLVVSSEGNLLDALGAAIKAALSNTGIPK 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQF 145
VHVAAEA +EQPEVD+SDEEFLQF
Sbjct: 171 VHVAAEALDNEQPEVDVSDEEFLQF 195
>gi|218186707|gb|EEC69134.1| hypothetical protein OsI_38058 [Oryza sativa Indica Group]
Length = 334
Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 131/209 (62%), Positives = 149/209 (71%), Gaps = 15/209 (7%)
Query: 24 KGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGK 83
KGK + + P E L L S++ HC D S+V V G+
Sbjct: 139 KGKFPFLLIVAQLQHPCLRV---EVLKNFLLSSVLHCK-----------DAYSVVKV-GQ 183
Query: 84 VCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFL 143
VCWDLYIDGLV+SSDGNLLDAL AIK ALS+TGIP V+V+ A +DE+PEVD+SDEEFL
Sbjct: 184 VCWDLYIDGLVVSSDGNLLDALAGAIKVALSDTGIPKVNVSLSATTDEEPEVDVSDEEFL 243
Query: 144 QFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPS 203
QFDTS VPVI TLTKVGKHYIVDAT EEESQMSSAVS+S+NR G ICG+ KRGG GLDPS
Sbjct: 244 QFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQICGLTKRGGAGLDPS 303
Query: 204 VILDMISVANFVSRQLMDKLDSEIAAADA 232
VI DMISVA VSRQ + LDSEI AA+A
Sbjct: 304 VIFDMISVAKHVSRQFISVLDSEILAAEA 332
>gi|449441009|ref|XP_004138276.1| PREDICTED: exosome complex component RRP42-like [Cucumis sativus]
Length = 184
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/127 (81%), Positives = 115/127 (90%)
Query: 110 KAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATL 169
KAALSNTGIP VHVAAEA +EQPEVD+SDEEFLQFDTSGVP I TLTKVGKHYIVDATL
Sbjct: 58 KAALSNTGIPKVHVAAEALDNEQPEVDVSDEEFLQFDTSGVPAIVTLTKVGKHYIVDATL 117
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
EEESQMSSAVSISI+R GHICG+ KRGGVG+DPS+ILDMISV VS +L++KLDSEI A
Sbjct: 118 EEESQMSSAVSISIDRHGHICGLTKRGGVGVDPSIILDMISVGKHVSEELLNKLDSEIVA 177
Query: 230 ADADEDE 236
A+ADE+E
Sbjct: 178 AEADEEE 184
>gi|221114702|ref|XP_002157039.1| PREDICTED: exosome complex component RRP42-like [Hydra
magnipapillata]
Length = 279
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 144/226 (63%), Gaps = 12/226 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ T+V+ VKAE+ P +P+ GKV FVDCS A P FEGRGG+EL+ ELS+ALQ+
Sbjct: 53 LAGTNVLIGVKAEISEPLPSKPNLGKVEFFVDCSANASPIFEGRGGDELAFELSAALQNT 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
SGA IDL L ++ GK CW LYID LV+ GNL DAL A+KAAL NT IP+
Sbjct: 113 F----SGA---IDLEKLCIIPGKACWILYIDALVLECGGNLFDALSIAVKAALHNTRIPT 165
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ + E A + +++SD+ + D S +PV+ TL KVG+ YIVDAT EEE +
Sbjct: 166 LSIIGEGA---EKSIEVSDDPYNSTPIDVSNIPVLVTLNKVGERYIVDATAEEEICSDAQ 222
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
+ +SIN++G++C + K G G++P ++ +M+ V + R L ++L+
Sbjct: 223 LLVSINQKGNVCSVQKHGSGGINPDLLFEMLKVGRKIGRILNEQLN 268
>gi|317574781|ref|NP_001188120.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
gi|308322915|gb|ADO28595.1| exosome complex exonuclease rrp42 [Ictalurus punctatus]
Length = 291
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 136/223 (60%), Gaps = 13/223 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ +KAE+GRP M PD+G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGQTDILVGIKAEIGRPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNNLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP+
Sbjct: 113 FNNRHS-----LDLRSLCIRPGENCWVLYVDVLLLQCDGNLFDAMSIAIKAALFNTRIPN 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
VH+ + DE+ E+++SD+ + ++ + VP I TL K+G ++VDATL+E+S
Sbjct: 168 VHI----SEDEEGGKEIELSDDPYDCMRLNVENVPCIVTLCKIGHRHVVDATLQEKSCSV 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+++ IS+ +G + + K GG LDP I +M V + L
Sbjct: 224 ASLLISVTHKGTVTCVRKLGGGSLDPDSIFEMTETGKRVGKML 266
>gi|308322117|gb|ADO28196.1| exosome complex exonuclease rrp42 [Ictalurus furcatus]
Length = 291
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 135/223 (60%), Gaps = 13/223 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ +KAE+GRP M PD+G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGQTDILVGIKAEIGRPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNNLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNRHS-----LDLRSLCISPGESCWVLYVDVLLLQCDGNLFDAMSIAIKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
VH+ + DE+ E+++SD+ + ++ + VP I TL K+G ++VDATL+E+S
Sbjct: 168 VHI----SEDEEGGKEIELSDDPYDCMRLNVENVPCIVTLCKIGHRHVVDATLQEKSCSV 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+++ IS+ +G + + K GG LDP I +M V + L
Sbjct: 224 ASLLISVTHKGTVTCVRKLGGGSLDPDSIFEMTETGKRVGKML 266
>gi|62955139|ref|NP_001017585.1| exosome complex exonuclease RRP42 [Danio rerio]
gi|62531183|gb|AAH92997.1| Zgc:110717 [Danio rerio]
Length = 291
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 138/234 (58%), Gaps = 17/234 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ +KAE+G+P M PD+G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGHTDVLVGIKAEIGKPRPMVPDEGYLEFFVDCSANATPEFEGRGGEELGVELSNTLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNRHS-----LDLRSLCICPGENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
VH+ + DE+ E+++SD+ F ++ + VP I TL K+G ++VDATL+E++
Sbjct: 168 VHI----SEDEEGGKEIELSDDPFDCMRLNVENVPCIVTLCKIGHRHVVDATLQEKACSV 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQ----LMDKLDSE 226
+++ I++ G + + K GG LDP I +M V + LMD L E
Sbjct: 224 ASLLIAVTHTGMVTCVRKMGGGSLDPESIFEMTEAGKRVGKSLHAPLMDLLQKE 277
>gi|307111365|gb|EFN59599.1| hypothetical protein CHLNCDRAFT_132993 [Chlorella variabilis]
Length = 292
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 146/236 (61%), Gaps = 2/236 (0%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDVI VKAE+G P +PD G++ V+CSP A P F GRGG+EL+ ELS AL+
Sbjct: 53 LGETDVIVGVKAEIGSPDLDRPDCGRLNFAVECSPVASPAFRGRGGDELAGELSRALERS 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G SG G G+DLS L +V GK CW LY+D L+++ GNL DA+ A KAAL++ IP
Sbjct: 113 MYPGPSGRGGGVDLSLLSIVSGKTCWVLYVDALLLNIGGNLHDAVSVAAKAALADAKIPK 172
Query: 121 VHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V ++P+ ++ D+ E ++ D G+P+ T++++G H +VD T EEE S+A
Sbjct: 173 VEVQPGEDPTDEPDYEVDDDPSEAMRLDVGGMPICVTVSQIGGHCVVDLTAEEELCSSAA 232
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
+ ++++ G++CG KR G++ S L+M+ A + +L L+ + A A +
Sbjct: 233 LQVAVDATGNVCGTTKRRRGGIEASQALEMVEAAQRAAAKLHAALNEALGAQQAQQ 288
>gi|213983243|ref|NP_001135527.1| uncharacterized protein LOC100216070 [Xenopus (Silurana)
tropicalis]
gi|156229972|gb|AAI52124.1| Zgc:110717 protein [Danio rerio]
gi|195539973|gb|AAI67984.1| Unknown (protein for MGC:180975) [Xenopus (Silurana) tropicalis]
Length = 291
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 138/234 (58%), Gaps = 17/234 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ +KAE+G+P M P++G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGHTDVLVGIKAEIGKPRPMVPNEGYLEFFVDCSANATPEFEGRGGEELGVELSNTLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNRHS-----LDLRSLCICPGENCWVLYVDVLLLQCDGNLFDAISIAIKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
VH+ + DE+ E+++SD+ F ++ + VP I TL K+G ++VDATL+E++
Sbjct: 168 VHI----SEDEEGGKEIELSDDPFDCMRLNVENVPCIVTLCKIGHRHVVDATLQEKACSV 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQ----LMDKLDSE 226
+++ I++ G + + K GG LDP I +M V + LMD L E
Sbjct: 224 ASLLIAVTHTGMVTCVRKMGGGSLDPESIFEMTEAGKRVGKSLHAPLMDLLQKE 277
>gi|213512498|ref|NP_001134892.1| Exosome complex exonuclease RRP42 [Salmo salar]
gi|209736940|gb|ACI69339.1| Exosome complex exonuclease RRP42 [Salmo salar]
Length = 291
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 135/223 (60%), Gaps = 13/223 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G+P M P +G + FVDCS A P FEGRGG+EL ELS+ L
Sbjct: 53 LGHTDVLVGVKAEMGKPRPMVPGEGYLEFFVDCSANATPEFEGRGGDELGMELSNTLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNRYS-----VDLKSLCISPGEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
VH+ + DE+ E+++SD+ + ++ + VP I TL KVG ++VDATL+E++
Sbjct: 168 VHI----SEDEEGGKEIELSDDPYDCMRLNVENVPCIVTLCKVGHRHVVDATLQEKACSV 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+++ IS+ R+G + + K GG LDP I +M V + L
Sbjct: 224 ASLIISVTRKGTVTCVRKVGGGSLDPESIFEMTETGKRVGKAL 266
>gi|348529951|ref|XP_003452475.1| PREDICTED: exosome complex component RRP42-like [Oreochromis
niloticus]
Length = 291
Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 134/223 (60%), Gaps = 13/223 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VKAE+G+P P +G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGHTAVLVGVKAEIGKPRPTVPTEGYLEFFVDCSANATPEFEGRGGEELGTELSNTLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S IDL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNKRS-----IDLKSLCICAGEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
VH+ +SD++ E+++SD+ + ++ + VP I TL KVG ++VDATL+E++
Sbjct: 168 VHI----SSDDEGGKEIELSDDPYDCMRLNVENVPCIVTLCKVGHRHVVDATLQEKACSV 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+++ IS+ +G I M K GG LDP I +M V + L
Sbjct: 224 ASLIISVTHKGTITCMRKVGGGSLDPESIFEMTEAGKRVGKAL 266
>gi|384250624|gb|EIE24103.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 139/211 (65%), Gaps = 6/211 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T+V+ VK E+G P PD G + + V+CSP A P+++G+ GE+L EL+ +L+
Sbjct: 49 LGNTEVLVGVKVEIGVPLEETPDCGGLQVTVECSPCAGPSYQGKSGEDLGVELTKSLERY 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L G+SG G +DL +L +V G+ CW L ID L++++DG++LDAL A KAAL +T IP
Sbjct: 109 LKPGRSGKGGCVDLRALSIVSGRRCWILCIDALILAADGSVLDALSVAAKAALQDTRIPL 168
Query: 121 VHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITT----LTKVGKHYIVDATLEEESQ 174
V V A DE+PE+++ D+ Q DTS VPVI T + + G+ YI+DA+ +EE+
Sbjct: 169 VEVGATENPDEEPELELDDDPAHATQVDTSSVPVIVTVYIVMFQAGRAYILDASSQEETC 228
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVI 205
+ SAV +++N G +CG+ K G ++P+V+
Sbjct: 229 IDSAVQVAVNGGGKLCGLFKVGPSAVNPAVL 259
>gi|225716114|gb|ACO13903.1| Exosome complex exonuclease RRP42 [Esox lucius]
Length = 291
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 131/221 (59%), Gaps = 9/221 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G+P M P +G + FVDCS A P FEGRGG+EL ELS+ L
Sbjct: 53 LGHTDVLVGVKAEIGKPRPMVPHEGYLEFFVDCSANATPEFEGRGGDELGVELSNTLYKV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S IDL SL + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNRSS-----IDLKSLCISPGEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
VH++ + E+++SD+ + ++ + VP I TL KVG ++VDATL+E++ ++
Sbjct: 168 VHLSENEEGGK--EIELSDDPYDCMRLNVENVPCIVTLCKVGYRHVVDATLQEKACSVAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+ IS+ +G I + K GG LDP I + V + L
Sbjct: 226 LIISVTHKGTITCVRKVGGGSLDPESIFETTETGKRVGKAL 266
>gi|303284571|ref|XP_003061576.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456906|gb|EEH54206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 318
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 139/233 (59%), Gaps = 11/233 (4%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLL 62
STDVI +VKA++G PSA P G++ V+ S ++ + GRGGE + ELS AL+ LL
Sbjct: 56 STDVIVTVKADIGAPSAEHPGDGRLRCAVELSSASDTAYGGRGGEARATELSRALERSLL 115
Query: 63 GGKSGA---------GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
G +G+ G +D+S+L + GK CW L +DGLV++ DGN+LDAL A +AAL
Sbjct: 116 GATAGSSASLSAHGEGCALDMSALGIQRGKSCWILQVDGLVLADDGNVLDALSMATRAAL 175
Query: 114 SNTGIPSVHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVGKHYIVDATLEE 171
+ IP V A D+ E+++ D EE + D SGVPVI TLT+VGKH IVDAT +E
Sbjct: 176 FDAKIPKVTAVAGPNPDDPAELELDDDPEECSRLDVSGVPVIVTLTRVGKHSIVDATKDE 235
Query: 172 ESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
ES + + ++ G + + KRGG G+D + + M A +QL+ LD
Sbjct: 236 ESMRDPRLCVGVDATGKVRSVGKRGGGGIDLNAMCAMTRTACECGKQLIAALD 288
>gi|260834769|ref|XP_002612382.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
gi|229297759|gb|EEN68391.1| hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae]
Length = 291
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 140/226 (61%), Gaps = 11/226 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD++ VKAE+G P +P +GK+ FVDCS A P FEGRGGEEL+ E+S+ALQ
Sbjct: 55 LGNTDILVGVKAEMGEPDPGRPKEGKLEFFVDCSANASPEFEGRGGEELAIEVSNALQRI 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL++L ++ CW L++D LV+ GNL DA+ A+KAAL NT IP+
Sbjct: 115 F-----NSKSTLDLTALCIIPEGQCWVLFVDVLVLECGGNLFDAVSLAVKAALFNTRIPT 169
Query: 121 VHVAAEAASDE-QPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSS 177
V V A+ DE Q E+++SD+ + + D VP+I TL+K+G ++VDA+ EEE +
Sbjct: 170 VVVTAD---DEGQQEIELSDDPYDVKRLDVDNVPLIVTLSKIGHRHVVDASWEEELCSLA 226
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+++ + ++G I G+ K G LDP I +MI V L +L
Sbjct: 227 RLTVGVTQKGTIAGLNKEGSGSLDPESIYEMIESGKKVGMVLNSRL 272
>gi|432881537|ref|XP_004073829.1| PREDICTED: exosome complex component RRP42-like [Oryzias latipes]
Length = 291
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 133/223 (59%), Gaps = 13/223 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +KAE+G+P + PD+G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGHTAVLVGIKAEIGKPRPLVPDEGYLEFFVDCSANATPEFEGRGGEELGIELSNTLYRV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S IDL L + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNKNS-----IDLKGLCISAGEHCWVLYVDVLLLQCDGNLYDAISVAIKAALFNTKIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
VH+ +SD++ EV++SD+ F ++ VP I TL KVG ++VDATL+E++
Sbjct: 168 VHM----SSDDEGGKEVELSDDPFDCVRLSVENVPCIVTLCKVGHRHVVDATLQEKACSV 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+++ I++ +G + + K GG LDP I +M V + L
Sbjct: 224 ASLIIAVTHRGTVTCVKKVGGGSLDPESIFEMTEAGKRVGKAL 266
>gi|290998465|ref|XP_002681801.1| predicted protein [Naegleria gruberi]
gi|284095426|gb|EFC49057.1| predicted protein [Naegleria gruberi]
Length = 289
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 131/210 (62%), Gaps = 6/210 (2%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ VK E+G PD+G++ + V+CSP+A FEGRG EE++AEL S L++ L
Sbjct: 55 TDVLVGVKVEIGEVDQDFPDQGRLEVHVECSPSANNEFEGRGAEEINAELISTLRNQLKN 114
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
+D + L +V+GK CW LY+D +V+ S GNL DAL A +AAL NT IP + V
Sbjct: 115 S-----FAVDWTKLCIVKGKQCWILYVDCIVLDSAGNLFDALAIATRAALYNTRIPKIEV 169
Query: 124 AAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISI 183
+ ++ + EV E+ + D S +P+ TL K+G +IVD +LEEE +S+ +++S+
Sbjct: 170 MEISPTETEFEVSDDPHEYSRIDCSNIPISVTLGKIGSKFIVDPSLEEEECISNRMTVSV 229
Query: 184 NRQGHICGMIKRGG-VGLDPSVILDMISVA 212
N++GHIC + K G G++PS + M+ A
Sbjct: 230 NKKGHICSIKKSGKDSGVNPSELTKMLQTA 259
>gi|356461011|ref|NP_001239083.1| exosome component 7 [Gallus gallus]
Length = 291
Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 140/241 (58%), Gaps = 18/241 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G + FVDCS A P FEGRGGEEL E++S L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPDEGYLEFFVDCSANATPEFEGRGGEELGTEIASTLYRI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S G+ +DL SL + G+ CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 F----SSEGS-VDLKSLCINPGEHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V DE+ E+++SD+ + ++ + VP I TL K+G ++VDATL+EE+
Sbjct: 168 VRV----LEDEEGSKEIELSDDPYDCIRLNVEDVPCIVTLNKIGYRHVVDATLQEEACSL 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
+++ I+I +G + M K G LDP I +M+ V + L L + DE+E
Sbjct: 224 ASLLIAITSKGALTCMKKIGKGSLDPESIFEMMETGKKVGKSLHASLQKVL-----DEEE 278
Query: 237 S 237
S
Sbjct: 279 S 279
>gi|291393541|ref|XP_002713440.1| PREDICTED: exosome component 7 [Oryctolagus cuniculus]
Length = 290
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 131/227 (57%), Gaps = 10/227 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G V FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPDEGYVEFFVDCSANATPEFEGRGGDDLGTEIANTLARI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 FNKG------SLDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
VHV + + E+++SD+ + +Q VP I TL K+G ++VDATL+EE+ ++
Sbjct: 167 VHVLEDEEGSK--EIELSDDPYDCIQLSVENVPCIITLCKIGYRHVVDATLQEEACSLAS 224
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 225 LLVSVTNKGVVTCMRKVGKGSLDPESIFEMMETGERVGKALHSSLQS 271
>gi|410911694|ref|XP_003969325.1| PREDICTED: exosome complex component RRP42-like [Takifugu rubripes]
Length = 291
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 131/223 (58%), Gaps = 13/223 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K E+G+P M P++G + FVDCS A P FEGRGGEEL ELS+ L
Sbjct: 53 LGHTVVLVGIKTEIGKPRPMVPNEGYLEFFVDCSANATPEFEGRGGEELGTELSNTLYRV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S IDL L + G+ CW LY+D L++ DGNL DA+ AIKAAL NT IP
Sbjct: 113 FNNKHS-----IDLKRLCISPGEHCWVLYVDVLLLQCDGNLYDAMSIAIKAALFNTKIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V + +SD++ ++++SD+ + ++ + VP I TL KVG +IVDATL+E++
Sbjct: 168 VFI----SSDDEGGKDIELSDDPYDCMRLNVENVPCIVTLCKVGHRHIVDATLQEKACSV 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+++ +S+ +G + K GG LDP I +M V + L
Sbjct: 224 ASLIMSVTHKGTVTCTRKVGGGSLDPESIFEMTEAGKRVGKAL 266
>gi|326922105|ref|XP_003207292.1| PREDICTED: exosome complex exonuclease RRP42-like [Meleagris
gallopavo]
Length = 291
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 139/241 (57%), Gaps = 18/241 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G + FVDCS A P FEGRGGEEL E++S L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPDEGYLEFFVDCSANATPEFEGRGGEELGTEIASTLYRI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S G+ IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 F----SSEGS-IDLKSLCINPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V DE+ E+++SD+ + ++ + VP I TL K+G ++VDATL+EE+
Sbjct: 168 VRV----LEDEEGSKEIELSDDPYDCIRLNVDDVPCIVTLNKIGYRHVVDATLQEEACCL 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
+++ I+I +G + M K G LDP I +M+ V + L L + DE+E
Sbjct: 224 ASLLIAITSKGALTCMKKIGKGSLDPESIFEMMETGKKVGKSLHASLQKVL-----DEEE 278
Query: 237 S 237
S
Sbjct: 279 S 279
>gi|198424385|ref|XP_002127184.1| PREDICTED: similar to Exosome complex exonuclease RRP42 (Ribosomal
RNA-processing protein 42) (Exosome component 7) (p8)
[Ciona intestinalis]
Length = 290
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 138/226 (61%), Gaps = 9/226 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GS++++ VK ELG P P++G + VDCSP A+P+F+GRGGE+LSA +S C
Sbjct: 53 LGSSELLVGVKVELGSPDPKAPNEGLIHFHVDCSPNADPSFQGRGGEDLSANIS-----C 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + IDL++L ++ K CW +++D L++ GNLLDA+ A+KAAL NTG+P+
Sbjct: 108 ILTRIYCNKSSIDLNTLGIIPHKQCWVVHVDVLILECGGNLLDAVSIAVKAALHNTGVPN 167
Query: 121 VHVA--AEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ V E + D +D +F+ +T PV+ T++KVG ++VDA+ EEE +++
Sbjct: 168 IQVTDGDEGTQEISLPDDPNDVKFI--NTVNAPVLVTISKVGSRHVVDASSEEELCCNAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
+ + + ++G GM K GG LDP I +MI + RQL LD
Sbjct: 226 LVMGVTKRGRTTGMRKMGGGSLDPESIPEMIETGKNIGRQLHISLD 271
>gi|380023350|ref|XP_003695486.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP42-like [Apis florea]
Length = 290
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 135/225 (60%), Gaps = 9/225 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD++ +K EL P A +P++GK+ FVDCS TA P FEG+GG++L+ E+S+
Sbjct: 53 IGNTDILVGIKVELDIPHADKPNEGKLEFFVDCSATATPAFEGKGGDDLATEISN----- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L DL +L ++ K CW +Y+D L++ GNL DA+G +KAAL++T IP
Sbjct: 108 ILTAAYQTRNAFDLRTLCILPHKKCWKIYVDVLILQCGGNLFDAVGITVKAALNSTEIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ A +P++++SD+ + +Q DTS P+I TL K+G +YI+D TLEEE +S+
Sbjct: 168 ITAATLDGG--EPDIELSDDPYDCIQLDTSNYPIIVTLCKIGDNYIIDPTLEEEVCSASS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ +S+ G I +IK G + PS M+ + + L + L
Sbjct: 226 IIMSVLPSGKISSVIKLGYGSIQPSTFKKMLQMGENIGLNLNESL 270
>gi|449270963|gb|EMC81600.1| Exosome complex exonuclease RRP42, partial [Columba livia]
Length = 257
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 130/213 (61%), Gaps = 13/213 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G + FVDCS A P FEGRGGEEL E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPDEGYLEFFVDCSANATPEFEGRGGEELGTEIANTLYRV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL SL + + CW +Y+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 F-----SSESSVDLKSLCINPREHCWVIYVDVLLLECGGNLFDAISIAVKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
VH+ DE+ E+++SD+ + ++ + VP I TL+K+G ++VDATL+EE+
Sbjct: 168 VHIL----EDEEGSKEIELSDDPYDCIRLNVDDVPCIVTLSKIGYRHVVDATLQEEACSL 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMI 209
+++ IS+ +G + M K G LDP I +M+
Sbjct: 224 ASLLISVTSKGALTSMKKMGKGSLDPESIFEMM 256
>gi|328866292|gb|EGG14677.1| hypothetical protein DFA_10935 [Dictyostelium fasciculatum]
Length = 282
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ T ++ +KA++ P + P+KG + VDC P+A P +EG+G + ++ EL+ L+
Sbjct: 53 LADTHILVGIKADISAPDPLTPNKGSLTFSVDCCPSASPEYEGKGADYINIELAKQLERV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ S +DL L ++ GK CW+LYID +V+ S GNL DAL ++AAL+NT +P+
Sbjct: 113 MKDSNS-----MDLGGLCIMPGKYCWNLYIDAIVLDSGGNLFDALSIGVRAALANTRLPT 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ + S EV E D GVP+ TLT +G ++VD + EEE M + ++
Sbjct: 168 IRITQGEYSTVDFEVSDDPEAMQSLDIDGVPINVTLTTIGNQFVVDCSGEEEQCMDARMT 227
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
I +N++G+ICG+ K G G+D I MI A V +++ +D+
Sbjct: 228 IGVNKRGNICGIQKGGVAGIDAHTINQMILAAKQVGSEILKTMDN 272
>gi|281202081|gb|EFA76286.1| hypothetical protein PPL_10049 [Polysphondylium pallidum PN500]
Length = 1016
Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats.
Identities = 86/218 (39%), Positives = 133/218 (61%), Gaps = 11/218 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +T V+ +KA++G P+ +P+ G + V+C P+A P FEG+G E+L+ EL+ L+
Sbjct: 806 LSNTHVLVGIKADIGAPTTDKPNSGVLNYSVECCPSASPEFEGKGAEQLNIELAKQLERM 865
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +DL SLV+V G+ CW+L+ID V+ SDGNL DAL +AAL NT +P+
Sbjct: 866 LENS-------LDLESLVIVPGRYCWNLHIDATVLDSDGNLFDALSIVTRAALFNTRLPT 918
Query: 121 VHVAAEAASDEQPEVDISDEE--FLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ V EQ E ++S++ + VP+ TLTKVG +++D+TLEEE M +
Sbjct: 919 IKVV--QGEHEQIEFEVSEDSDTYQSLSIENVPICVTLTKVGTQFLIDSTLEEELCMEAR 976
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVS 216
++I IN++ +IC + K G GLD + + MI+VA VS
Sbjct: 977 LTIGINKKSNICSIQKGGMNGLDANTVNQMINVAKQVS 1014
>gi|383861879|ref|XP_003706412.1| PREDICTED: exosome complex component RRP42-like [Megachile
rotundata]
Length = 291
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 133/225 (59%), Gaps = 9/225 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TDV+ +K EL P A +P++GK+ FVDCS TA P FEG+GG++L+ E+S+
Sbjct: 53 IGNTDVLVGIKVELDSPHADKPNEGKLEFFVDCSATATPAFEGKGGDDLATEISN----- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L DL +L ++ K CW +++D L++ GNL D +GAA+KAAL +T IP
Sbjct: 108 ILTIAYQTRNAFDLRTLCILPSKKCWKIFVDVLILQCGGNLFDTVGAAVKAALYSTEIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ A +P++ +SD+ + +Q DTS PVI TL K+G +YIVD T EEE +S+
Sbjct: 168 ITAATLDGG--EPDIQLSDDLYDCIQLDTSNYPVIVTLCKIGDNYIVDPTSEEEVCSASS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ +S+ G I +IK G + P+ M+ V QL + L
Sbjct: 226 IVMSVLPNGRISSVIKLGYGSIQPNTFKKMLKTGQNVGLQLNEDL 270
>gi|340708517|ref|XP_003392871.1| PREDICTED: exosome complex component RRP42-like isoform 1 [Bombus
terrestris]
gi|340708519|ref|XP_003392872.1| PREDICTED: exosome complex component RRP42-like isoform 2 [Bombus
terrestris]
Length = 291
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 136/225 (60%), Gaps = 9/225 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD++ +K EL P A + ++GK+ FVDCS TA P FEG+GG++L+ E+S+
Sbjct: 53 IGNTDILVGIKIELDVPHADRSNEGKLEFFVDCSATATPAFEGKGGDDLATEISN----- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L DL +L ++ K CW +Y+D L++ GNL DA+G A+KAAL++T IP
Sbjct: 108 ILTAAYQTPNAFDLRTLCILPHKKCWKIYVDILILQCGGNLFDAVGIAVKAALNSTEIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ A +P++++SD+ + +Q DTS P+I TL K+G +YIVD T EEE +S+
Sbjct: 168 ITTATLDGG--EPDIELSDDAYDCIQLDTSNYPIIVTLCKIGDNYIVDPTSEEEVCSASS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ +S+ G + +IK G + P+ + M+ + + QL + L
Sbjct: 226 IVMSVLPNGKVSSVIKLGYGSIQPNTFIKMLQIGKNIGLQLNESL 270
>gi|432100894|gb|ELK29247.1| Exosome complex component RRP42 [Myotis davidii]
Length = 298
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG+EL E+++ L
Sbjct: 60 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDELGTEIANTLYR- 118
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 119 IFSNKSS----VDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 174
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 175 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 232
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
V +S+ QG + M K G LDP I +M+ + V + L L S
Sbjct: 233 VLVSVTSQGVVTCMRKVGKGSLDPESIFEMMETSKRVGKVLHTSLHS 279
>gi|443685755|gb|ELT89253.1| hypothetical protein CAPTEDRAFT_159382 [Capitella teleta]
Length = 287
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 125/225 (55%), Gaps = 13/225 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
M +TD++ VKAE+ P QP G+V FVDCS A P FEGRGGE+L+ E++S L
Sbjct: 53 MANTDILVGVKAEIVEPETEQPKNGRVEFFVDCSANATPAFEGRGGEDLATEIASLLD-- 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+DL +L ++ GK CW LY+D L++ GNL DA+ A+K+AL T IP
Sbjct: 111 -------LSVHLDLEALCIISGKQCWLLYVDVLILECGGNLFDAVALAVKSALHQTRIPL 163
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V+ + E+++SD+ F + T VP + TL K+G ++VDA LEEE+ +
Sbjct: 164 VTVS--VGERGEAEIELSDDPFDCKRVGTDNVPCLVTLNKIGLAHVVDACLEEEACSLAK 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
V + G I M K G LDP+ I DMI A V L D L
Sbjct: 222 VVFGVTENGSISSMRKIGSGSLDPNTINDMIQSAKRVGLSLNDSL 266
>gi|226372666|gb|ACO51958.1| Exosome complex exonuclease RRP42 [Rana catesbeiana]
Length = 291
Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 131/221 (59%), Gaps = 9/221 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+ P +P +G + FVDCS A P FEGRGGEEL E+++ L
Sbjct: 53 IGHTDVLVGVKAEMSTPKLDRPCEGYLEFFVDCSANATPEFEGRGGEELGTEIANMLYK- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL ++ + CW LYID L++ G+L D + +KAAL NT IP
Sbjct: 112 VFDNKSS----IDLESLCILPREHCWTLYIDVLLLHCGGSLFDTISIGVKAALFNTRIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + ++ E+++SD+ + ++ + VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VSVLEDDGGNK--EIELSDDPYDCMRLNVENVPCIITLCKIGHRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
V ++IN +G + M K G LDP I +MI V++ L
Sbjct: 226 VLVAINIKGTLTCMRKMGKGSLDPECIFEMIETGKRVAKSL 266
>gi|345091073|ref|NP_001230753.1| exosome component 7 [Sus scrofa]
Length = 291
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG+EL E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDELGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNK----GSIDLKSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + +Q + VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIQLNVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +++ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVAVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHTSLQS 272
>gi|345321857|ref|XP_003430500.1| PREDICTED: exosome complex component RRP42-like [Ornithorhynchus
anatinus]
Length = 276
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P +G + FVDCS A P FEGRGG+EL E+++ L
Sbjct: 38 LGHTDILVGVKAEMGTPKLEKPKEGFLEFFVDCSANAAPEFEGRGGDELGTEIANTLYR- 96
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 97 IFNNKSS----IDLESLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 152
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ + VP I TL+K+G ++VDATL+EE+ +
Sbjct: 153 VQVLEDEEGSK--DIELSDDPYDCIRLNVENVPCIVTLSKIGYRHVVDATLQEEACSLAR 210
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP + +MI V + + L S
Sbjct: 211 LLVSVTNKGILTCMRKVGKGSLDPESVFEMIETGKRVGKMVHSSLQS 257
>gi|350413287|ref|XP_003489947.1| PREDICTED: exosome complex component RRP42-like [Bombus impatiens]
Length = 291
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 134/225 (59%), Gaps = 9/225 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD++ +K EL P A +P++GK+ FVDCS TA P FEG+GG++L+ E+S+
Sbjct: 53 IGNTDILVGIKIELDVPHADRPNEGKLEFFVDCSATATPAFEGKGGDDLATEISN----- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L DL +L ++ K CW +Y+D L++ GNL DA+G +KAAL++T IP
Sbjct: 108 ILTAAYQTRNAFDLRTLCILPHKKCWKIYVDILILQCGGNLFDAVGITVKAALNSTEIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ A +P++++SD+ + +Q DTS P+I TL K+G +YIVD T EEE +S+
Sbjct: 168 --ITAATLDGGEPDIELSDDAYDCIQLDTSNYPIIVTLCKIGDNYIVDPTSEEEVCSASS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ +S+ G + +IK G + + + M+ + + QL L
Sbjct: 226 IVMSVLPNGKVSSVIKLGYGSIQSNTFIKMLQMGKNIGLQLNKSL 270
>gi|395540147|ref|XP_003772020.1| PREDICTED: exosome complex component RRP42 [Sarcophilus harrisii]
Length = 281
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 134/227 (59%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 43 LGHTDILVGVKAEMGTPKLERPDEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 101
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K IDL+SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 102 IFNNK----GSIDLTSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTSIPK 157
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ + VP I TL+K+G ++VDATL+EE+ ++
Sbjct: 158 VRVLEDEEGSK--DIELSDDPYDCIRLNVENVPCIITLSKIGYRHVVDATLQEEACSLAS 215
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L +
Sbjct: 216 LLVSVTSKGVLTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQT 262
>gi|355686807|gb|AER98193.1| exosome component 7 [Mustela putorius furo]
Length = 291
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +PD+G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPDEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ DGNL D + A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKSLCISPREHCWILYVDVLLLECDGNLFDTICIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSTGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|390474971|ref|XP_002807638.2| PREDICTED: exosome complex component RRP42 [Callithrix jacchus]
Length = 291
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 135/229 (58%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGMPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ DGNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISAREHCWVLYVDVLLLECDGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V DE+ ++++SD+ + ++ VP I TL K+G ++VDATL+EE+
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYQHVVDATLQEEACSL 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+++ +S+ +G + + K G LDP I +M+ + V + L L S
Sbjct: 224 ASLLVSVTSKGVVTCLRKVGKGSLDPESIFEMMETSKRVGKVLHASLQS 272
>gi|403268453|ref|XP_003926289.1| PREDICTED: exosome complex component RRP42 [Saimiri boliviensis
boliviensis]
Length = 291
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 134/227 (59%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPDFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ DGNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECDGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + + K G LDP I +M+ + V + L L S
Sbjct: 226 LLVSVTSKGVVTCLRKVGKGSLDPESIFEMMETSKRVGKVLHASLQS 272
>gi|440905791|gb|ELR56125.1| Exosome complex exonuclease RRP42, partial [Bos grunniens mutus]
Length = 273
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 35 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 93
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 94 IFNNKSS----IDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISVAVKAALFNTRIPR 149
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + +Q VP I TL K+G ++VDATL+EE+ ++
Sbjct: 150 VRVLEDEEGSK--DIELSDDPYDCIQLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 207
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + + K G LDP I +M+ V + L L S
Sbjct: 208 LLVSVTSKGVVTCIRKVGKGSLDPESIFEMLETGKRVGKVLHASLQS 254
>gi|358418234|ref|XP_003583876.1| PREDICTED: exosome complex component RRP42-like [Bos taurus]
gi|359078399|ref|XP_003587703.1| PREDICTED: exosome complex component RRP42-like [Bos taurus]
Length = 291
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----IDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISVAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + +Q VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIQLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + + K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCIRKVGKGSLDPESIFEMLETGKRVGKVLHASLQS 272
>gi|395843587|ref|XP_003794559.1| PREDICTED: exosome complex component RRP42 [Otolemur garnettii]
Length = 291
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISVAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHSSLQS 272
>gi|307176033|gb|EFN65792.1| Exosome complex exonuclease RRP42 [Camponotus floridanus]
Length = 426
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 134/230 (58%), Gaps = 9/230 (3%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ VK E+ P A +PD+GK+ FVDCS A P FEG+GG++L+ E+S+ L
Sbjct: 191 TDVLVGVKLEIDTPYAEKPDEGKLDFFVDCSANATPAFEGKGGDDLATEISNVLSMAY-- 248
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
DL L ++ K CW +Y+D L++ GNL DA+GAA+KAAL NT IP V +
Sbjct: 249 ---QTPDVFDLRQLCIIPHKKCWKMYVDILILQCGGNLFDAVGAAVKAALYNTEIPKV-I 304
Query: 124 AAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSI 181
AA E P++ +SD+ + ++ D + P I T+ K+G ++++D TLEEES + + +
Sbjct: 305 AATLDGGE-PDIQVSDDPYDCIKLDITTYPSIVTVCKIGDNFVIDPTLEEESCSAVNIIM 363
Query: 182 SINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
S+ G + M+K+G L P+ ++ M+ V + +L + L + D
Sbjct: 364 SVMPNGKVTSMVKQGYGSLLPTTLIKMLEVGKDIGLKLNEALKKTLEEED 413
>gi|349602645|gb|AEP98722.1| Exosome complex exonuclease RRP42-like protein, partial [Equus
caballus]
Length = 283
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++AL
Sbjct: 45 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANALYR- 103
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 104 IFNNKSS----VDLKSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 159
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 160 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLRKIGYRHVVDATLQEEACPWAS 217
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L +
Sbjct: 218 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHTSLQN 264
>gi|307206575|gb|EFN84575.1| Exosome complex exonuclease RRP42 [Harpegnathos saltator]
Length = 296
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 9/225 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TDV+ VK E+ P A +P++GK+ FVDCS A P FEG+GGE+L+ E+S+
Sbjct: 58 IGNTDVLVGVKVEIDTPHANKPEEGKLDFFVDCSANATPAFEGKGGEDLATEISN----- 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL DL L ++ K CW +Y+D L++ GNL DA+GAA+KAAL NT IP
Sbjct: 113 LLSLAYRTPYAFDLKELCILPHKKCWKMYVDILILQCGGNLFDAVGAAVKAALYNTEIPR 172
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V A +P+V +SD+ + ++ + + PV+ T+ K+G + +VD T EEES ++
Sbjct: 173 VVTA--MLDGNEPDVKLSDDLYDCIKLNVTNYPVVITVCKIGDNCVVDPTPEEESCSVAS 230
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ +S+ G I ++K G L P ++ M+ V V+ +L L
Sbjct: 231 LIMSVMPNGKITSVVKIGYASLQPVTLIKMLEVGKSVALRLNQAL 275
>gi|113197990|gb|AAI21334.1| hypothetical LOC496941 [Xenopus (Silurana) tropicalis]
Length = 291
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 5/225 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G P +P +G + FVDCS A P FEGRGGEEL AE++ L
Sbjct: 53 IGHTDVLVGVKAEMGTPKLERPGEGYLEFFVDCSANATPEFEGRGGEELGAEIAFMLYK- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S IDL SL + E + CW LY+D L++ GNL D + A+KAAL N IP
Sbjct: 112 IFDNRSS----IDLESLCIQEREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V + + + E+ + ++ + VP I TL+++G ++VDATL+EE+ +++
Sbjct: 168 VRILEDDEGGKDFELSDDPYDCVRLNVVNVPCIVTLSRIGHRHVVDATLQEEACSVASLL 227
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
I++ +G + M K G LDP I +MI V++ L L S
Sbjct: 228 IAVTSKGILTCMRKIGKGSLDPESIFEMIETGKRVAKSLHTSLQS 272
>gi|332020945|gb|EGI61339.1| Exosome complex exonuclease RRP42 [Acromyrmex echinatior]
Length = 292
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 133/222 (59%), Gaps = 9/222 (4%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ VK E+ P A +P++GK+ FVDCS A P FEG+GG++L+ E+S+ L
Sbjct: 57 TDVLVGVKLEIDTPYAERPEEGKLEFFVDCSANATPAFEGKGGDDLATEISNVLSMAY-- 114
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
DL L ++ + CW +Y+D L++ GNL DA+GAA+KAAL NT IP V +
Sbjct: 115 ---QTPDAFDLKQLCIIPHQKCWKIYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVII 171
Query: 124 AAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSI 181
A +P++ ISD+ + ++ D + PV+ T+ K+G ++++D T EEES ++++ +
Sbjct: 172 AILDGG--EPDIQISDDPYDCIKLDVTNYPVVLTVCKIGDNFVIDPTSEEESCSTASILM 229
Query: 182 SINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
S+ G + ++K G L PS ++ M+ V +S +L + L
Sbjct: 230 SVMPNGKVTSVVKLGYGSLLPSTLIKMLQVGKDISFKLNEAL 271
>gi|426249669|ref|XP_004018572.1| PREDICTED: exosome complex component RRP42 [Ovis aries]
Length = 291
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASAAPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----IDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + +Q VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCVQLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + + K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCVRKVGKGSLDPESIFEMLETGKRVGKVLHASLQS 272
>gi|156366152|ref|XP_001627004.1| predicted protein [Nematostella vectensis]
gi|156213900|gb|EDO34904.1| predicted protein [Nematostella vectensis]
Length = 266
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 128/213 (60%), Gaps = 10/213 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ TD++ VKAE+G P+ + P G+V FVDCS A F GR G++L+A+L +L
Sbjct: 53 LSDTDILVGVKAEIGEPNLLTPGCGRVEFFVDCSSNASVEFNGRSGDDLAADLMRSLDR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ IDLSSL ++ G+ CW LY+D LV+ GNL DAL A+KAAL NT IP+
Sbjct: 112 ----TYSNKSAIDLSSLSIIHGQQCWVLYVDTLVLECGGNLYDALSLAVKAALYNTRIPN 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V+++ + E++ISD+ + Q +P+I TL+K+G ++VDA+ EE
Sbjct: 168 VTVSSDGG---EVELEISDDPYDCHQLPPDQMPIIITLSKIGGRHVVDASQSEELCSDCH 224
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISV 211
+ +++N G++CG K G GL+P I +M+ V
Sbjct: 225 LLVAVNSCGNVCGQQKIGCGGLEPDTICEMLEV 257
>gi|332215753|ref|XP_003257009.1| PREDICTED: exosome complex component RRP42 [Nomascus leucogenys]
gi|332215755|ref|XP_003257010.1| PREDICTED: exosome complex component RRP42 [Nomascus leucogenys]
Length = 291
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|473949|dbj|BAA06226.1| KIAA0116 [Homo sapiens]
Length = 290
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 52 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 111 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 167 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 224
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 225 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 271
>gi|297285946|ref|XP_002802903.1| PREDICTED: exosome complex exonuclease RRP42-like [Macaca mulatta]
Length = 556
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTSIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|189083688|ref|NP_055819.2| exosome complex component RRP42 [Homo sapiens]
gi|322510129|sp|Q15024.3|EXOS7_HUMAN RecName: Full=Exosome complex component RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42; AltName: Full=p8
gi|119585135|gb|EAW64731.1| exosome component 7, isoform CRA_a [Homo sapiens]
gi|119585136|gb|EAW64732.1| exosome component 7, isoform CRA_a [Homo sapiens]
gi|119585137|gb|EAW64733.1| exosome component 7, isoform CRA_a [Homo sapiens]
Length = 291
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|15215485|gb|AAH12831.1| Exosome component 7 [Homo sapiens]
gi|168272912|dbj|BAG10295.1| exosome complex exonuclease RRP42 [synthetic construct]
Length = 291
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|322788559|gb|EFZ14187.1| hypothetical protein SINV_07329 [Solenopsis invicta]
Length = 292
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 133/229 (58%), Gaps = 13/229 (5%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ VK E+ P A +P +GK+ FVDCS A P FEG+GG++L+ E+S+ L
Sbjct: 57 TDVLVGVKVEIDTPYAERPHEGKLDFFVDCSANATPAFEGKGGDDLATEISNVLSIAY-- 114
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
DL L ++ K CW +Y+D L++ GNL DA+GAA+KAAL NT IP V
Sbjct: 115 ---QTPNAFDLKQLCIIPYKKCWKMYVDILILQCGGNLFDAVGAAVKAALYNTEIPRVIT 171
Query: 124 AAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSI 181
A +P++ +SD+ + ++ D + P++ T+ K+G ++++D T EEES ++++ I
Sbjct: 172 ATLDGG--EPDIQVSDDPYDCIKLDVTNYPLVVTVCKIGDNFVIDPTSEEESCSTASILI 229
Query: 182 SINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL----MDKLDSE 226
S G + ++K G L PS ++ M+ V +S +L M+KL E
Sbjct: 230 SAMPNGKVTSVVKLGYGSLLPSTLIKMMKVGKDISLKLNEAVMNKLKDE 278
>gi|338714956|ref|XP_001496279.3| PREDICTED: exosome complex component RRP42-like [Equus caballus]
Length = 291
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 133/229 (58%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V DE+ ++++SD+ + ++ VP I TL K+G ++VDATL+EE+
Sbjct: 168 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSL 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+++ +S+ +G + M K G LDP I +M+ V + L L +
Sbjct: 224 ASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHTSLQN 272
>gi|122920911|pdb|2NN6|E Chain E, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 305
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 67 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 125
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 126 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 181
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 182 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 239
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 240 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 286
>gi|402860382|ref|XP_003894609.1| PREDICTED: exosome complex component RRP42 [Papio anubis]
gi|402860384|ref|XP_003894610.1| PREDICTED: exosome complex component RRP42 [Papio anubis]
gi|355559716|gb|EHH16444.1| hypothetical protein EGK_11725 [Macaca mulatta]
gi|355746753|gb|EHH51367.1| hypothetical protein EGM_10727 [Macaca fascicularis]
gi|380786223|gb|AFE64987.1| exosome complex component RRP42 [Macaca mulatta]
gi|384943954|gb|AFI35582.1| exosome complex component RRP42 [Macaca mulatta]
Length = 291
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTSIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|353681756|ref|NP_001238821.1| exosome complex component RRP42 [Pan troglodytes]
gi|410206888|gb|JAA00663.1| exosome component 7 [Pan troglodytes]
gi|410246930|gb|JAA11432.1| exosome component 7 [Pan troglodytes]
gi|410287270|gb|JAA22235.1| exosome component 7 [Pan troglodytes]
gi|410328427|gb|JAA33160.1| exosome component 7 [Pan troglodytes]
Length = 291
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIITLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|189055112|dbj|BAG38096.1| unnamed protein product [Homo sapiens]
Length = 291
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|395733899|ref|XP_002813914.2| PREDICTED: exosome complex component RRP42 [Pongo abelii]
gi|395733901|ref|XP_003776313.1| PREDICTED: exosome complex component RRP42 [Pongo abelii]
Length = 291
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ +P I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENIPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|242022077|ref|XP_002431468.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
gi|212516756|gb|EEB18730.1| Exosome complex exonuclease RRP42, putative [Pediculus humanus
corporis]
Length = 290
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 129/234 (55%), Gaps = 10/234 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VKAE+ +P+ PDKGK+ FVDCS A P FE RGGE+L+ +LSSAL
Sbjct: 53 LANTDILVGVKAEIVKPTIENPDKGKIEFFVDCSANATPAFEKRGGEDLANDLSSALTRA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
A +DL SL ++ CW LY+D L++ GNL DA+G +KAAL NT IP
Sbjct: 113 Y-----SAPESLDLKSLCILPKFQCWKLYVDVLILECGGNLFDAVGLGVKAALRNTFIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V AA D PE+ IS++ + + DTS PV T+ ++G H +VD EEE+
Sbjct: 168 VVAAALDGCD--PELVISEDPYDCWRLDTSKTPVFVTVMRIGDHCVVDPGAEEEAVSGGG 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA 232
+ +S G I ++K G L P + +MI + L D L+ + D+
Sbjct: 226 LLVSYG-SGSITSLLKISGGSLHPITLREMIQLGGSAGECLQDTLERALKEEDS 278
>gi|426340209|ref|XP_004034025.1| PREDICTED: exosome complex component RRP42 [Gorilla gorilla
gorilla]
gi|426340211|ref|XP_004034026.1| PREDICTED: exosome complex component RRP42 [Gorilla gorilla
gorilla]
Length = 291
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|124487127|ref|NP_001074657.1| exosome complex exonuclease RRP42 [Mus musculus]
gi|408360083|sp|Q9D0M0.2|EXOS7_MOUSE RecName: Full=Exosome complex exonuclease RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42
gi|66267444|gb|AAH94932.1| Exosome component 7 [Mus musculus]
gi|124376042|gb|AAI32364.1| Exosome component 7 [Mus musculus]
gi|148677125|gb|EDL09072.1| mCG23310, isoform CRA_b [Mus musculus]
gi|148877509|gb|AAI45676.1| Exosome component 7 [Mus musculus]
Length = 291
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVA--AEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V E A D +++SD+ + ++ VP I TL K+G ++VDATL+EE+
Sbjct: 168 VRVLEDEEGAKD----IELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSL 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+++ +S+ +G + M K G LDP I +M+ + V + L L S
Sbjct: 224 ASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 272
>gi|417398454|gb|JAA46260.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp42
[Desmodus rotundus]
Length = 291
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG+EL E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDELGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L V + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFHNKSS----VDLEALCVSPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDSIRLSVDNVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ + V L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETSKRVGTVLHASLQS 272
>gi|410950992|ref|XP_003982186.1| PREDICTED: exosome complex component RRP42 [Felis catus]
Length = 291
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 131/227 (57%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL D + A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKSLCISPREHCWILYVDVLLLECGGNLFDTISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|73985825|ref|XP_533858.2| PREDICTED: exosome complex component RRP42 isoform 1 [Canis lupus
familiaris]
Length = 291
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 130/227 (57%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS IDL SL + + CW LY+D L++ GNL D + A+KAAL NT IP
Sbjct: 112 IFNNKSS----IDLKSLCISPREHCWILYVDVLLLECGGNLFDTICIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + + VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCFRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>gi|148236233|ref|NP_001086766.1| exosome component 7 [Xenopus laevis]
gi|50418038|gb|AAH77415.1| Exosc7-prov protein [Xenopus laevis]
Length = 291
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 126/225 (56%), Gaps = 5/225 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G P +P +G + FVDCS A P FEGRGGEEL E++ L
Sbjct: 53 IGHTDVLVGVKAEMGTPKLERPGEGYLEFFVDCSANAAPEFEGRGGEELGTEIAFMLYK- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S IDL SL + + CW LY+D L++ GNL D + A+KAAL N IP
Sbjct: 112 IFDNRSS----IDLESLCIQAREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V V + + E+ + ++ + VP I TL+++G ++VDATL+EE+ +++
Sbjct: 168 VRVLEDEEGGKDFELSDDPYDCVRLNVVNVPCIVTLSRIGHRHVVDATLQEEACSVASLL 227
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
IS+ +G + M K G LDP I +MI V++ L L S
Sbjct: 228 ISVTSKGILTCMRKIGKGSLDPESIFEMIETGKHVAKSLHTSLQS 272
>gi|334348902|ref|XP_003342119.1| PREDICTED: exosome complex component RRP42-like [Monodelphis
domestica]
Length = 332
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 94 LGHTDILVGVKAEMGTPRLERPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRI 153
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S IDL++L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 154 FNNKGS-----IDLTALCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTSIPK 208
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ + VP I TL+K+G ++VDATL+EE+ ++
Sbjct: 209 VRVLEDEEGTK--DIELSDDPYDCIRLNVENVPCIITLSKIGYRHVVDATLQEEACSLAS 266
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L +
Sbjct: 267 LLVSVTSKGVLTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQT 313
>gi|321475502|gb|EFX86465.1| hypothetical protein DAPPUDRAFT_222073 [Daphnia pulex]
Length = 290
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 131/228 (57%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ ++D++ VK EL P +P +G++ FVDCS A P FEGRGGE+L+ E+ LQ
Sbjct: 53 LANSDILVGVKVELASPLPDKPQEGRLEFFVDCSANATPEFEGRGGEDLANEICRFLQR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+G I+LS L V+ G+ CW LY+D L++ GNL DA+ A+K+AL T IPS
Sbjct: 112 ----SYASGDTINLSELSVLTGQQCWVLYVDILILECGGNLYDAVSLAVKSALYATQIPS 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ VA +QPE+++SD+ + + +T +P + TL K+G HY+VD T EEE SS
Sbjct: 168 IKVAT--MDGDQPELELSDDPYDTKRLNTENIPCVVTLMKIGNHYLVDPTPEEECCSSSG 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMIS----VANFVSRQLMDK 222
+ ++++ I + K G L P ++ M+ V V+ LM K
Sbjct: 226 IVVAVSGNKKITAVRKIGSGSLHPDSLVSMLKTGSEVGAVVNTILMKK 273
>gi|387915924|gb|AFK11571.1| exosome complex component RRP42-like protein [Callorhinchus milii]
Length = 291
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 133/231 (57%), Gaps = 13/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VKAE+G P +P +G + FVDCS A P FEGRGGE+L E+++ L
Sbjct: 53 IGHTGVLVGVKAEMGAPKLERPKEGFLEFFVDCSANATPEFEGRGGEDLGTEIANTLYRV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G S +DL++L + + CW L++D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 FDNGSS-----LDLTALCITPREHCWILFVDVLLLECGGNLFDAISIAVKAALHNTRIPK 167
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V DE+ E+++SD+ + ++ + VP I TL+K+G ++VDAT +EE+
Sbjct: 168 VRV----LEDEEGSKEIELSDDPYDCIRLNVESVPCIITLSKIGYRHVVDATSQEEACCM 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++ +S+ +G I K GG LDP+ I +M+ V L L + +
Sbjct: 224 ASLLVSVTGKGTITCFRKIGGGSLDPASIFEMLETGKRVGNALHVSLQTTL 274
>gi|213688370|ref|NP_001094195.1| exosome component 7 [Rattus norvegicus]
gi|149018124|gb|EDL76765.1| exosome component 7 [Rattus norvegicus]
Length = 291
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P +G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLERPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ + V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRVGKVLHMSLQS 272
>gi|37359778|dbj|BAC97867.1| mKIAA0116 protein [Mus musculus]
Length = 286
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD + VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 48 LGHTDFLVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 107 IFNNKSS----VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 162
Query: 121 VHVA--AEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V E A D +++SD+ + ++ VP I TL K+G ++VDATL+EE+
Sbjct: 163 VRVLEDEEGAKD----IELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSL 218
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+++ +S+ +G + M K G LDP I +M+ + V + L L S
Sbjct: 219 ASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 267
>gi|59809424|gb|AAH89995.1| Exosc7 protein, partial [Rattus norvegicus]
Length = 257
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P +G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 19 LGHTDILVGVKAEMGTPKLERPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 77
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 78 IFNNKSS----VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 133
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 134 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLAS 191
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ + V + L L S
Sbjct: 192 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRVGKVLHMSLQS 238
>gi|344276339|ref|XP_003409966.1| PREDICTED: exosome complex component RRP42-like [Loxodonta
africana]
Length = 457
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 5/225 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L AE+++ L +
Sbjct: 219 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGAEIANTL-YG 277
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 278 IFNNKSS----VDLRSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPK 333
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V V + + E+ + ++ VP I TL K+G ++VDATL+EE+ +++
Sbjct: 334 VRVLEDEEGSKDIELFDDPYDCIRLSVDNVPCIVTLCKIGYRHVVDATLQEEACSLASLL 393
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+S+ G + M K G LDP I +M+ V + L L S
Sbjct: 394 VSVTSMGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 438
>gi|241813566|ref|XP_002416505.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
[Ixodes scapularis]
gi|215510969|gb|EEC20422.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp42, putative
[Ixodes scapularis]
Length = 290
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 135/231 (58%), Gaps = 9/231 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +KA+L P D+G++ FVDC+ A+P FEGRGGE+++AE+SSAL
Sbjct: 53 LANTDILVGIKAQLETPDPGSTDQGRIEFFVDCTANADPEFEGRGGEDIAAEISSALAQA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL VV G+ W LY+D L++ G+L+DA+ A+KAAL + IP
Sbjct: 113 YRSPKC-----LDLRSLAVVPGQQVWVLYVDILILECGGSLVDAVSVAVKAALYDLKIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + D PEV++S + F + T VP TL+KVG+ +I+DAT EE++ +
Sbjct: 168 VSVTVDENGD--PEVEVSGDPFDVEKLSTENVPCFITLSKVGQQFILDATQEEQACAVGS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
+++++ G I + K G L P ++D+I V + L + +E+ A
Sbjct: 226 LALAVTASGKIAALFKAGTGSLHPENVMDVIEVGRDIGASLNAAVVAELEA 276
>gi|82524833|ref|NP_001032342.1| exosome component 7 [Xenopus (Silurana) tropicalis]
gi|89267936|emb|CAJ82816.1| exosome component 7 [Xenopus (Silurana) tropicalis]
Length = 291
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 5/225 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G P + +G + FVDCS A P FEGRGGEEL AE++ L
Sbjct: 53 IGHTDVLVGVKAEMGTPKLERAGEGYLEFFVDCSANATPEFEGRGGEELGAEIAFMLYK- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S IDL SL + E + CW LY+D L++ GNL D + A+KAAL N IP
Sbjct: 112 IFDNRSS----IDLESLCIQEREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V + + + E+ + ++ + VP I TL+++G ++VDATL+EE+ +++
Sbjct: 168 VRILEDDEGGKDFELSDDPYDCVRLNVVNVPCIVTLSRIGHRHVVDATLQEEACSVASLL 227
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
I++ +G + M K G LDP I +MI V++ L L S
Sbjct: 228 IAVTSKGILTCMRKIGKGSLDPESIFEMIETGKRVAKSLHTSLQS 272
>gi|56970613|gb|AAH88546.1| LOC496941 protein, partial [Xenopus (Silurana) tropicalis]
Length = 289
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 5/225 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TDV+ VKAE+G P + +G + FVDCS A P FEGRGGEEL AE++ L
Sbjct: 51 IGHTDVLVGVKAEMGTPKLERAGEGYLEFFVDCSANATPEFEGRGGEELGAEIAFMLYK- 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S IDL SL + E + CW LY+D L++ GNL D + A+KAAL N IP
Sbjct: 110 IFDNRSS----IDLESLCIQEREHCWVLYVDVLLLECGGNLFDTISVAVKAALFNARIPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V + + + E+ + ++ + VP I TL+++G ++VDATL+EE+ +++
Sbjct: 166 VRILEDDEGGKDFELSDDPYDCVRLNVVNVPCIVTLSRIGHRHVVDATLQEEACSVASLL 225
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
I++ +G + M K G LDP I +MI V++ L L S
Sbjct: 226 IAVTSKGILTCMRKIGKGSLDPESIFEMIETGKRVAKSLHTSLQS 270
>gi|348582602|ref|XP_003477065.1| PREDICTED: exosome complex component RRP42-like [Cavia porcellus]
Length = 291
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 129/223 (57%), Gaps = 13/223 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPEEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S +DL SL + + CW LY+D L++ GNL DA+ +KAAL NT IP
Sbjct: 112 IFNNRSS----VDLKSLCISPREHCWVLYVDVLLLECGGNLFDAISVTVKAALFNTRIPK 167
Query: 121 VHVA--AEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V E A D +++SD+ + +Q VP I TL K+G ++VDATL+EE+
Sbjct: 168 VRVLEDEEGAKD----IELSDDPYDCMQLSVENVPCIVTLCKIGCRHVVDATLQEEACSL 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+++ +S+ +G + + K G LDP I +M+ V + L
Sbjct: 224 ASLLVSVTSEGVVTCVRKVGKGSLDPESIFEMMETGKRVGKVL 266
>gi|30962875|gb|AAH52656.1| Exosome component 7 [Mus musculus]
Length = 291
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 133/229 (58%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL +T IP
Sbjct: 112 IFNNKSS----VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFDTRIPR 167
Query: 121 VHVA--AEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V E A D +++SD+ + ++ VP I TL K+G ++VDATL+EE+
Sbjct: 168 VRVLEDEEGAKD----IELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSL 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+++ +S+ +G + M K G LDP I +M+ + V + L L S
Sbjct: 224 ASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 272
>gi|384486761|gb|EIE78941.1| hypothetical protein RO3G_03646 [Rhizopus delemar RA 99-880]
Length = 303
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 138/239 (57%), Gaps = 7/239 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G +DV+ VK E+G QP+KG++ + V+CSP+A FEGRG +E++ L+ A+
Sbjct: 53 LGESDVLVGVKVEIGEVERSQPNKGRLVLNVECSPSASQQFEGRGADEINNSLTMAIDRI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G +SG +DL L ++ G+ CW +YID +V+ + GNLLD + +AAL N IP
Sbjct: 113 FNGPQSG----LDLEKLCIIPGQQCWVIYIDAMVMDAAGNLLDCIVMTTRAALYNARIPK 168
Query: 121 VHVAAEAASDEQPEV--DISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ + + EV D+ D E + +P+ TL K+ YI+D T+ EE
Sbjct: 169 TEIQDLGEGEYEFEVMDDVEDAEPI-VGWENLPISVTLYKIADRYIIDPTILEELCSQVT 227
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
+++ +N+ G +CG+ K G ++PS++ +MI A +++ L+ +LD+++ A + + E+
Sbjct: 228 LTVGVNKDGAVCGIQKGGNGSIEPSLLTEMIQTATALAKPLIQQLDNKLIAEENHDQEN 286
>gi|431905092|gb|ELK10147.1| Exosome complex exonuclease RRP42 [Pteropus alecto]
Length = 311
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 131/227 (57%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 73 LGHTDILVGVKAEMGAPRLDKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 131
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 132 IFNNKSS----VDLKSLCISPREHCWILYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 187
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 188 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 245
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + K G LDP + +M+ V + L L S
Sbjct: 246 LLVSVTSKGVVTCTRKVGKGSLDPESVFEMMETGKRVGKVLHASLQS 292
>gi|354486487|ref|XP_003505412.1| PREDICTED: exosome complex component RRP42-like [Cricetulus
griseus]
Length = 274
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P +G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 36 LGHTDILVGVKAEMGTPKLEKPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 94
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DLSSL + + CW L +D L++ GNL DA+ A+KAAL NT IP
Sbjct: 95 IFNNKSS----VDLSSLCISPREHCWVLCVDVLLLECGGNLFDAISIAVKAALFNTRIPR 150
Query: 121 VHVAA--EAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V E A D +++SD+ + ++ VP I TL K+G ++VDATL+EE+
Sbjct: 151 VRVLEDEEGAKD----IELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSL 206
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+++ +S+ +G + M K G LDP I +M+ + V + L L S
Sbjct: 207 ASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRVGKVLHMSLQS 255
>gi|346469645|gb|AEO34667.1| hypothetical protein [Amblyomma maculatum]
Length = 289
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 128/214 (59%), Gaps = 7/214 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +KAEL P P KG++ FVDC+ A+P FEGRGGEE++ ++ SAL
Sbjct: 53 LANTDILVGIKAELDEPYPTAPGKGRIEFFVDCTANADPEFEGRGGEEVATKIKSALAQA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G+ +DL SL V+ G+ W LY+D L++ G+LLDA+ +KAAL + IP
Sbjct: 113 F-----GSPKCLDLKSLAVIPGQQVWVLYVDVLILECGGSLLDAVSVGVKAALFDLKIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V V + +++ EV + + D + VP TL+KVG+ +++DAT EEE+ +++
Sbjct: 168 VSVTVDENGEQEIEVSGDPYDVSKMDITDVPCFITLSKVGQQFVLDATQEEEACAVGSLA 227
Query: 181 ISINRQGHICGMIKRGGVG-LDPSVILDMISVAN 213
+++ G I +IK GG+G L P ++D+I V
Sbjct: 228 MAVTAAGRIVSLIK-GGIGSLHPENVMDIIEVGK 260
>gi|301754007|ref|XP_002912799.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease
RRP42-like [Ailuropoda melanoleuca]
Length = 459
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 131/229 (57%), Gaps = 14/229 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL D + A+KAAL NT IP
Sbjct: 112 -IFNKSS----VDLKSLCISPREHCWILYVDVLLLECGGNLFDTICIAVKAALFNTRIPR 166
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V DE+ ++++SD+ + ++ VP I TL K+G ++VDATL+EE+
Sbjct: 167 VRV----LEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSL 222
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+++ +S+ G + M K G LDP + +M+ V + L L S
Sbjct: 223 ASLLVSVTSTGVVTCMRKVGKGSLDPESVFEMMETGKRVGKVLHASLQS 271
>gi|281343574|gb|EFB19158.1| hypothetical protein PANDA_000598 [Ailuropoda melanoleuca]
Length = 271
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 128/227 (56%), Gaps = 10/227 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 34 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYRI 93
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL + + CW LY+D L++ GNL D + A+KAAL NT IP
Sbjct: 94 F------NKSSVDLKSLCISPREHCWILYVDVLLLECGGNLFDTICIAVKAALFNTRIPR 147
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 148 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 205
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ G + M K G LDP + +M+ V + L L S
Sbjct: 206 LLVSVTSTGVVTCMRKVGKGSLDPESVFEMMETGKRVGKVLHASLQS 252
>gi|224045546|ref|XP_002199163.1| PREDICTED: exosome complex component RRP42 [Taeniopygia guttata]
Length = 290
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 130/223 (58%), Gaps = 14/223 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ +KAE+G P +PD+G + FVDCS + P EGRGGEEL ++++ L
Sbjct: 53 LGETDILVGIKAEMGTPKLEKPDEGYLEFFVDCSSNS-PELEGRGGEELGTDIANTLYRI 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S +DL SL + + CW LY+D L++ GN+ DA+ A+KAAL NT IP
Sbjct: 112 FSCENS-----VDLKSLCINPKEHCWVLYVDVLLLECGGNIFDAISIAVKAALFNTRIPK 166
Query: 121 VHVAAEAASDEQ--PEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V DE+ E+++SD+ + ++ + VP + TL+K+G ++VDATL+EE+
Sbjct: 167 VRV----LEDEEGTKEIELSDDPYDCIRLNIDEVPCVVTLSKIGYRHVVDATLQEEACSL 222
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+++ IS+ +G I M K G LDP I +M+ V + L
Sbjct: 223 ASLLISVTSKGAITSMKKVGKGSLDPESIFEMMETGQRVGKSL 265
>gi|302837568|ref|XP_002950343.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
gi|300264348|gb|EFJ48544.1| hypothetical protein VOLCADRAFT_90878 [Volvox carteri f.
nagariensis]
Length = 311
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 141/256 (55%), Gaps = 33/256 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG+TDVI VK E+G PS+ P++G++ + V+ SP A P ++GR GE ++++ ++
Sbjct: 49 MGATDVIVGVKVEVGSPSSSAPNQGRLQVTVEFSPCASPIYKGRFGETYGEQIAAVIESS 108
Query: 61 L---------------------------LGG-----KSGA-GAGIDLSSLVVVEGKVCWD 87
L L G SG G G+DLS L ++ GK W
Sbjct: 109 LAPSGRAGGGGGGGVAYDGTLPTAASPHLRGAPPSSSSGTPGPGLDLSKLCILPGKTAWV 168
Query: 88 LYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDT 147
L++D LV++ DGN+L A+ AA AAL +T IP V +AA +E+ E+D S + D
Sbjct: 169 LFVDALVLNDDGNVLGAVSAATLAALQHTRIPKVEAVRDAAGEEEIELDDSPGAAWRLDV 228
Query: 148 SGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILD 207
S +P++ T ++VG ++D T +EE +SA+ +++NR+G +CG G G++ S++L
Sbjct: 229 SALPLVVTTSRVGSQCVMDLTAQEERCSTSALHVAVNRKGQLCGTTLSGRTGVETSMLLM 288
Query: 208 MISVANFVSRQLMDKL 223
M+ A + L D+L
Sbjct: 289 MMETAQKLGPILWDQL 304
>gi|405963081|gb|EKC28685.1| Exosome complex exonuclease RRP42 [Crassostrea gigas]
Length = 262
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 127/211 (60%), Gaps = 10/211 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++A VKAELG PS +P+KG++ FVDCS A P FEGRGGEEL+AE+ +
Sbjct: 53 LANTDILAGVKAELGTPSPDKPNKGRLEFFVDCSANATPVFEGRGGEELAAEIGN----- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + DL +L ++ + CW LY+D L++ GNL D A+KAAL NT IP
Sbjct: 108 ILTRTYDCPSCFDLEALCIIPEEQCWILYVDVLLLECGGNLFDVASIAVKAALYNTKIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V+ + E++ISD+ + + + P I T+ K+G ++VDA+L+EE+ +
Sbjct: 168 VTVSRDEG---LVELEISDDPYDVQRVEVQSAPCIVTVCKIGHSHVVDASLKEEACCLAR 224
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMI 209
+++ + + + G+ K G LDP+ + DM+
Sbjct: 225 LTMGVTERRTVTGVRKEGSGSLDPASLEDMM 255
>gi|427787609|gb|JAA59256.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp42
[Rhipicephalus pulchellus]
Length = 289
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 127/213 (59%), Gaps = 9/213 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +KAEL P P G+V FVDC+ A+P FEGRGGEE++ E+ SAL
Sbjct: 53 LANTDILVGIKAELDAPDPSAPHLGRVEFFVDCTANADPVFEGRGGEEIATEIRSALART 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL VV G+ W LY+D L++ G+L+DA+ A+KAAL + IP
Sbjct: 113 YSSPKC-----LDLKSLAVVPGQQAWVLYVDVLILECGGSLIDAVSVAVKAALYDLKIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + +PE+++SD+ + + + VP TL+KVG+ +++DAT EE++ +
Sbjct: 168 VSVTID--ENGEPEIEVSDDPYDVNKMSIANVPCFITLSKVGQQFVLDATQEEQACAVGS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISV 211
+++++ G I + K G L P I+D+I V
Sbjct: 226 LAMAVTATGKIASLFKGGTGSLHPENIMDIIEV 258
>gi|444512849|gb|ELV10190.1| Exosome complex component RRP42 [Tupaia chinensis]
Length = 308
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+ P +P +G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 70 LGHTDILVGVKAEMSTPKLEKPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 129 IFNNKSS----VDLRSLCISPREHCWALYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 184
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 185 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLAS 242
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +++ +G + + K G LDP I +M+ V + L L S
Sbjct: 243 LLLAVTSKGVVTCVRKVGKGSLDPESIFEMMETGKRVGKVLHVSLQS 289
>gi|340377723|ref|XP_003387378.1| PREDICTED: exosome complex component RRP42-like [Amphimedon
queenslandica]
Length = 281
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 10/222 (4%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
T+++ VKAE+G+P+ + P+KG++ FVDCS A P FEGR GE+L L+ L
Sbjct: 56 TNILVGVKAEIGQPNPLNPNKGRIEFFVDCSALASPKFEGRRGEDLGRNLAHRLSDLYEN 115
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
IDL SL ++ G+ CW +Y+D LV+ G +LD L A+K AL+NT IP + V
Sbjct: 116 SNC-----IDLESLSIIPGQDCWIIYVDALVLEYSGGVLDCLSIAVKGALANTKIPKLTV 170
Query: 124 AAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSI 181
E E SD F DT+ VPV +L+ +G +IVDA+ EEE+ +S+
Sbjct: 171 IGEGEEQEIEI---SDNPFDSTSIDTNNVPVFVSLSLIGNQFIVDASHEEEACSLCQLSV 227
Query: 182 SINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+N +G IC ++K G + IS+A+ + +++K+
Sbjct: 228 GVNHKGSICSILKEGAGSFKHRQYNEAISLASEIGVSVIEKI 269
>gi|313236425|emb|CBY11742.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 138/238 (57%), Gaps = 12/238 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGR-GGEELSAELSSALQH 59
+GST+++ VKAEL + S + D G++ VDCSP A P FEGR GGE++ AE++S
Sbjct: 56 IGSTELLVGVKAELEKASLVDGDAGRIEFSVDCSPNATPMFEGRRGGEDIEAEIAS---- 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L A +D L VV CW LY+D L++ GNL+DA A+KAAL +T +P
Sbjct: 112 -LFSRFYKAEEFMDRKKLTVVPNAWCWVLYVDILILEVGGNLVDASSIAVKAALRDTRLP 170
Query: 120 SVHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSS 177
+++ E +++ ++ +SD+ + D P+ T+ K+G YIVD T EEE+ +
Sbjct: 171 LLNI--EKGDEDEYDIQVSDDPLDGEELDIHP-PLTVTVAKLGHRYIVDPTDEEEAVTLA 227
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADED 235
+ +S+N G GM + G LDPS IL+MIS+A ++ L ++ + AA+ DED
Sbjct: 228 NLIVSVNENGEARGMKQTGKGSLDPSSILEMISIAKKAAKTLHRSVNRALLAAE-DED 284
>gi|313221392|emb|CBY32145.1| unnamed protein product [Oikopleura dioica]
Length = 288
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 138/238 (57%), Gaps = 12/238 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGR-GGEELSAELSSALQH 59
+GST+++ VKAEL + S + D G++ VDCSP A P FEGR GGE++ AE++S
Sbjct: 56 IGSTELLVGVKAELEKASLVDGDAGRIEFSVDCSPNATPMFEGRRGGEDIEAEIAS---- 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L A +D L VV CW LY+D L++ GNL+DA A+KAAL +T +P
Sbjct: 112 -LFSRFYKAEEFMDRKKLTVVPNAWCWVLYVDILILEVGGNLVDASSIAVKAALRDTRLP 170
Query: 120 SVHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSS 177
+++ E +++ ++ +SD+ + D P+ T+ K+G YIVD T EEE+ +
Sbjct: 171 LLNI--EKGDEDEFDIQVSDDPLDGEELDIHP-PLTVTVAKLGHRYIVDPTDEEEAVTLA 227
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADED 235
+ +S+N G GM + G LDPS IL+MIS+A ++ L ++ + AA+ DED
Sbjct: 228 NLIVSVNENGEARGMKQTGKGSLDPSSILEMISIAKKAAKTLHRSVNRALLAAE-DED 284
>gi|193645775|ref|XP_001952675.1| PREDICTED: exosome complex exonuclease RRP42-like [Acyrthosiphon
pisum]
Length = 289
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 120/211 (56%), Gaps = 11/211 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ ++D++ VK E+ P P GK+ FVDCS A P FEGRGGE L+AELS L C
Sbjct: 53 LANSDILVCVKVEIDTPLPEAPKDGKIEYFVDCSANATPAFEGRGGEHLAAELSRFL--C 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L G +LS L +V G+ CW L++D L++ GNL DA+ A KAAL NT +P+
Sbjct: 111 L-----AHGPVFNLSKLCIVPGQSCWKLFVDVLILECGGNLFDAVSLAAKAALCNTSLPN 165
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ E + ++ ISD+ F + S +PV+ +L K+G Y+ D T+EEE +
Sbjct: 166 IVGTYEDG--QNIDLQISDDPFDTKPLEASDLPVLVSLCKIGNSYVADPTIEEEICGAGC 223
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMI 209
+ +S+ +G++ ++K+G P + ++I
Sbjct: 224 IVVSVTPKGNVTAVLKKGAGSFMPDTLNEII 254
>gi|330795359|ref|XP_003285741.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
gi|325084289|gb|EGC37720.1| hypothetical protein DICPUDRAFT_29826 [Dictyostelium purpureum]
Length = 290
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 22/242 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQP----------DKGKVAIF-VDCSPTAEPTFEGRGGEEL 49
+ T+V+ VKAE+ + +QP D K +F V+C P+A P FEG+G E L
Sbjct: 51 LSDTEVLVGVKAEI---THIQPKELTNTLQTFDTSKRLVFSVNCCPSASPEFEGKGSEFL 107
Query: 50 SAELSSALQ--HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGA 107
+ EL L+ + + KS G D + L +V GK W LYID +V+ SDGNL DAL
Sbjct: 108 NIELGKQLERLYKFIFNKSNY-HGND-NCLSIVSGKYYWTLYIDAIVLDSDGNLFDALSI 165
Query: 108 AIKAALSNTGIPSVHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVGKHYIV 165
A +AAL NT +P V A E+ ++SD E+ L P+ TLTK+G +++
Sbjct: 166 ATRAALYNTRLP--RVKAIQGEYEEITFEVSDDPEDTLSLSIENAPICVTLTKIGTQFVI 223
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
D+TL+EE M + +++ IN +IC + K G GLDP+ I MI+ + + ++++ +D
Sbjct: 224 DSTLQEELCMDARLTVGINSHSNICSIQKGGIQGLDPATINQMINTSKVIGTKILNIMDK 283
Query: 226 EI 227
+
Sbjct: 284 TL 285
>gi|119585138|gb|EAW64734.1| exosome component 7, isoform CRA_b [Homo sapiens]
Length = 226
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 14 LGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGID 73
+G P +P++G + FVDCS +A P FEGRGG++L E+++ L + KS +D
Sbjct: 1 MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR-IFNNKSS----VD 55
Query: 74 LSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQP 133
L +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP V V + +
Sbjct: 56 LKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSK-- 113
Query: 134 EVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICG 191
++++SD+ + ++ VP I TL K+G ++VDATL+EE+ +++ +S+ +G +
Sbjct: 114 DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTC 173
Query: 192 MIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
M K G LDP I +M+ V + L L S
Sbjct: 174 MRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 207
>gi|320169517|gb|EFW46416.1| exosome component 7 [Capsaspora owczarzaki ATCC 30864]
Length = 294
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 129/229 (56%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPT--FEGRGGEELSAELSSALQ 58
+G TDV+ VKAE+G P +P +G+ + VD S T+ F+ E EL+SA+
Sbjct: 52 LGLTDVLVGVKAEIGEPDQAKPTQGRFEVTVDFSSTSASAAAFDDDNTE---TELASAIA 108
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
L G+DLS+L +V G+ CW +YID L++ + GN D L A++AAL+NT I
Sbjct: 109 RTL--------KGVDLSALCIVPGEQCWVIYIDALILVAAGNAYDVLSLAVRAALANTRI 160
Query: 119 PSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
P V V+ + + EV + D VPVI TL+K+G +IVDAT+EEES S
Sbjct: 161 PKVEVSDDGHGRVELEVSDDPHHVTELDIRAVPVIVTLSKIGAFHIVDATIEEESCAKSR 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
V ++++ +G C + K G++P ++ D + A V + L+ +L++ +
Sbjct: 221 VHVAVDSKGAFCMVTKASAGGIEPQLLFDALESAKQVGQHLLSQLEATL 269
>gi|344255178|gb|EGW11282.1| Exosome complex exonuclease RRP42 [Cricetulus griseus]
Length = 226
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 13/216 (6%)
Query: 14 LGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGID 73
+G P +P +G + FVDCS A P FEGRGG++L E+++ L + KS +D
Sbjct: 1 MGTPKLEKPSEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR-IFNNKSS----VD 55
Query: 74 LSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA--EAASDE 131
LSSL + + CW L +D L++ GNL DA+ A+KAAL NT IP V V E A D
Sbjct: 56 LSSLCISPREHCWVLCVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKD- 114
Query: 132 QPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHI 189
+++SD+ + ++ VP I TL K+G ++VDATL+EE+ +++ +S+ +G +
Sbjct: 115 ---IELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVV 171
Query: 190 CGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
M K G LDP I +M+ + V + L L S
Sbjct: 172 TCMRKVGKGSLDPESIFEMMESSKRVGKVLHMSLQS 207
>gi|196004466|ref|XP_002112100.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
gi|190585999|gb|EDV26067.1| hypothetical protein TRIADDRAFT_55798 [Trichoplax adhaerens]
Length = 288
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 126/235 (53%), Gaps = 13/235 (5%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ +KAE+G+P + + G + +VDCS +G G+ + +L+ +L+
Sbjct: 56 TDVLVGIKAEIGQPKQERSNTGHLEFYVDCSSYNTTEIDGHIGD-FTTQLTKSLERIY-- 112
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
+ +DL SL ++ G+ W LYID +V+ GNLLD + A+KAAL NT IP V V
Sbjct: 113 ---DSENVLDLKSLTIIAGEQVWVLYIDAVVLECCGNLLDCISIAVKAALYNTRIPGVSV 169
Query: 124 AAEAASDE-QPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSIS 182
E E + D +DE+ L D VPVI + K+G Y+VDAT EEE S + I+
Sbjct: 170 NDEEGVLELEISDDPNDEKKLSIDK--VPVIVSCNKIGHRYVVDATQEEECCSSGRLLIA 227
Query: 183 INRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
+N + +IC + K G LDPS I +MI A RQ L+ E+ E+ S
Sbjct: 228 VNDRNNICSLQKSGTGSLDPSTIFEMIETA----RQAAVPLNQELLQTLKREERS 278
>gi|66814304|ref|XP_641331.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
gi|74855928|sp|Q54VM4.1|EXOS7_DICDI RecName: Full=Putative exosome complex exonuclease RRP42; AltName:
Full=Exosome component 7; AltName: Full=Ribosomal
RNA-processing protein 42
gi|60469358|gb|EAL67352.1| hypothetical protein DDB_G0280251 [Dictyostelium discoideum AX4]
Length = 324
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 135/274 (49%), Gaps = 52/274 (18%)
Query: 1 MGSTDVIASVKAELGR------PSAMQPDKGKVAIF-VDCSPTAEPTFEGRGGEELSAEL 53
+ T+V+ VKAE+ + Q D K +F V+C P+A P FEG+G E L+ EL
Sbjct: 51 LSQTEVLVGVKAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIEL 110
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVV---------------------------------- 79
S L+ L + L++ ++
Sbjct: 111 SKQLER--LYSHPNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNC 168
Query: 80 ---VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVD 136
V GK W LY+D +V+ SDGNL DAL A ++AL NT IP V A E+ +
Sbjct: 169 FSIVSGKYYWTLYVDAIVLDSDGNLFDALSIACRSALQNTRIP--RVKAIQGEYEEITFE 226
Query: 137 ISD--EEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIK 194
+SD E+ L VP+ TLTK+G +++D TL+EE M++ +++ +N +IC I+
Sbjct: 227 VSDDPEDTLSLSIDNVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICS-IQ 285
Query: 195 RGGV-GLDPSVILDMISVANFVSRQLMDKLDSEI 227
+GG+ GLDP+ I MI+ A V ++++ +D +
Sbjct: 286 KGGIDGLDPTTINQMINTAKVVGVKILNIMDKTL 319
>gi|357631022|gb|EHJ78761.1| exosc7 protein [Danaus plexippus]
Length = 310
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 110/190 (57%), Gaps = 11/190 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P +P++GK+ FVDCS A P FEGRGGE+L+ +S+ +Q
Sbjct: 53 LANTDILVGVKTEIDVPKPDKPNQGKIDFFVDCSANATPEFEGRGGEQLANNISNLMQRA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ DL L ++EGK CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 113 YHSQQA-----FDLKQLCILEGKQCWKLYVDILILECGGNLCDAVSLAVKAALFNTRIPF 167
Query: 121 VHVAA--EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V A D Q D D + L+ T+ P++ TL K+G+ +VD + EEES S
Sbjct: 168 VKAALLDGGNVDLQLSDDPYDSKLLEVGTA--PLLVTLCKIGEKCVVDPSAEEES--CSV 223
Query: 179 VSISINRQGH 188
+S+ + G+
Sbjct: 224 ISLVVGVTGN 233
>gi|58381777|ref|XP_311461.2| AGAP010483-PA [Anopheles gambiae str. PEST]
gi|55242661|gb|EAA07136.2| AGAP010483-PA [Anopheles gambiae str. PEST]
Length = 303
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 110/192 (57%), Gaps = 11/192 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VKAE+ P+ +P++GKV F+DCS A P FEGRGGE+L+ E+S+ L
Sbjct: 53 LANTDILVGVKAEIDTPNPDRPNEGKVDFFIDCSANATPEFEGRGGEQLATEISNTLSKA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K G DL+ L ++ G CW LY+D L++ GNL DA+ A+K AL NT IP
Sbjct: 113 YESQK-----GFDLAGLCIMAGHQCWKLYVDVLILECGGNLFDAVSLAVKGALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEE--SQMS 176
V A ++ ++D+ + + D + P++ T+ K+G +VD + EEE S S
Sbjct: 168 VSTAMHDGG--SMDLILTDDPYDCERLDVTTAPILVTVCKIGDQCVVDPSAEEEECSVAS 225
Query: 177 SAVSISINRQGH 188
AV +S G+
Sbjct: 226 VAVGVSCRPDGN 237
>gi|91079418|ref|XP_967497.1| PREDICTED: similar to exosome complex exonuclease rrp42 (ribosomal
RNA processing protein 42 [Tribolium castaneum]
gi|270003471|gb|EEZ99918.1| hypothetical protein TcasGA2_TC002710 [Tribolium castaneum]
Length = 285
Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 131/236 (55%), Gaps = 6/236 (2%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ +VK E+ P +P +GK+ FVDCS A P FEGRGGE+L+ E+S++L
Sbjct: 50 LANTDVLVAVKIEVDVPYPERPKEGKLEFFVDCSANATPDFEGRGGEDLAIEISNSL--- 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ DL+ L +++G CW +++D L++ GNL DA+ A+KAAL +T IP
Sbjct: 107 --SAAYKSPEVFDLTKLCILKGHKCWKIFVDILLLECGGNLYDAVSIAVKAALWDTRIPL 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V ++ EV + + D + P++ T+ K+G+ IVD + EE AV
Sbjct: 165 VKSVTVDGNNVDMEVSDELHDCQKLDVTAAPIMVTVCKIGEQCIVDPNVAEELCSVGAVV 224
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
I++++ +++ G L P +L+ + + V+++L + L ++ + ++++
Sbjct: 225 IAVSKD-KFSTVLQIGSGSLHPQTLLECLQMGEKVAQRLSEALTETLSEINPNKNQ 279
>gi|157169424|ref|XP_001651510.1| exosome complex exonuclease rrp42 (ribosomal RNA processing protein
42 [Aedes aegypti]
gi|108878402|gb|EAT42627.1| AAEL005851-PA [Aedes aegypti]
Length = 299
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 110/189 (58%), Gaps = 9/189 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +VKA++ PS +P +GK+ FVDCS A P FEGRGGEEL+ E+S+ L
Sbjct: 53 LANTDILVAVKADIDAPSPDRPKEGKIEFFVDCSANATPDFEGRGGEELATEISNTLSKA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ DLS L ++ CW LY+D L++ GNL DA+ A+KAAL +T +P
Sbjct: 113 YLSQQA-----FDLSPLCILAKHQCWKLYVDILILECGGNLFDAVSLAVKAALYSTKLPR 167
Query: 121 VHVAAE--AASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V A A D D D E L T+ P++ T+ K+G + +VD + EEE + +
Sbjct: 168 VSSAELDGGAMDIILSDDPYDCERLNIQTA--PLLVTVCKIGDYCVVDPSAEEEECSAIS 225
Query: 179 VSISINRQG 187
V I ++R+
Sbjct: 226 VVIGVSRKN 234
>gi|332375881|gb|AEE63081.1| unknown [Dendroctonus ponderosae]
Length = 283
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 102/175 (58%), Gaps = 9/175 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ +VK E+ P +P +GK+ FVDCS A P FEGRGGE L+ EL++
Sbjct: 50 LANTDVLVAVKIEVDTPLPEKPFEGKIEFFVDCSANATPDFEGRGGESLAVELAN----- 104
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + DL L +++GK CW LY+D L++ GNL DA+ A+KAAL T +P
Sbjct: 105 ILSSAYESPLTFDLRKLCILKGKKCWKLYVDVLILECGGNLFDAVSLAVKAALHITQVPK 164
Query: 121 VHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
+ A + E+++SD + + + +PV+ T+ K+G H IVD +L EE
Sbjct: 165 --IKAVNIDGDNVEIEVSDNIIDCDRLNVENLPVLVTVCKIGNHCIVDPSLTEEQ 217
>gi|312371957|gb|EFR20014.1| hypothetical protein AND_20780 [Anopheles darlingi]
Length = 407
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 102/174 (58%), Gaps = 9/174 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VKAE+ P +P++GK+ F+DCS A P FEGRGGE+L+ E+S+ L
Sbjct: 161 LANTDILVGVKAEIDTPHPDRPNEGKIDFFIDCSANAAPEFEGRGGEQLAEEISNTLAKA 220
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G DLSSL ++ CW LY+D LV+ GNL DA+ A+K AL NT +P
Sbjct: 221 Y-----ESQHGFDLSSLCILANHQCWKLYVDVLVLECGGNLFDAISLAVKGALYNTRVPR 275
Query: 121 VHVAA--EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEE 172
V A + D D D E L+ DT VP++ T+ K+G+ +VD + EEE
Sbjct: 276 VSTAMLDGGSMDLILTDDPFDCERLKVDT--VPLLVTVCKIGEQCVVDPSAEEE 327
>gi|391336427|ref|XP_003742582.1| PREDICTED: exosome complex component RRP42-like [Metaseiulus
occidentalis]
Length = 289
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 125/232 (53%), Gaps = 9/232 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ +KAE+ P PD+G++ FVD + A+P FEG GG+EL +++ AL
Sbjct: 53 IANTDVLVGIKAEIAAPDHAAPDRGRIEFFVDLTANADPEFEGTGGDELGQQIAGALAEA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DLSSL +V+ + W L++D L++ G+L DA+ A+KAAL + IP
Sbjct: 113 YVSKRF-----LDLSSLCIVKNQQVWVLFVDILILELGGSLYDAVSIAVKAALYDLRIPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQ--FDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ V+ D +PE+++SD+ Q + VP TL+K+G ++VD + EE +
Sbjct: 168 LTVSI--GEDGKPEIEVSDDPHTQEPLAIANVPCFVTLSKIGSQFVVDVSQEEAECSTVN 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230
+ +I G + +K G L P +++ + +A + L L + A
Sbjct: 226 MCCAIAPNGRMATTMKTGVGSLHPDSLIEALQLAQEIGVALHKALHKQFVKA 277
>gi|47208122|emb|CAF91040.1| unnamed protein product [Tetraodon nigroviridis]
Length = 376
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 110/192 (57%), Gaps = 9/192 (4%)
Query: 30 FVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLY 89
F S A P FEGRGGEEL ++S++L S +D + L + G+ CW LY
Sbjct: 1 FFVSSANATPEFEGRGGEELGVDISNSLYRVFNNKHS-----VDANKLCISPGEHCWVLY 55
Query: 90 IDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF--LQFDT 147
+D L++ DGNL DA+ AIKAAL NT IP V ++++ + E+++SD+ + ++ +
Sbjct: 56 VDVLLLQCDGNLYDAISIAIKAALFNTKIPKVFISSDDEGGK--EIELSDDPYDCMRINV 113
Query: 148 SGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILD 207
VP I TL KVG +IVDATL+E++ +++ +S+ +G + K GG LDP I +
Sbjct: 114 ENVPCIVTLCKVGHRHIVDATLQEKACSVASLIMSVTHKGMVTCTRKVGGGSLDPESIFE 173
Query: 208 MISVANFVSRQL 219
M V + L
Sbjct: 174 MTEAGKRVGKAL 185
>gi|195430734|ref|XP_002063403.1| GK21414 [Drosophila willistoni]
gi|194159488|gb|EDW74389.1| GK21414 [Drosophila willistoni]
Length = 296
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 127/235 (54%), Gaps = 16/235 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P + P+ GK+ FVDCS A P FEGRGG +L+ EL ALQ+
Sbjct: 53 LANTDILVGVKTEIDVPDPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILALQNA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
S D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 113 YESPLS-----FDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALYNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEE--SQMS 176
V A ++ ISD + + + VP++ T+ K+G + +VD + EEE S +S
Sbjct: 167 -RVTASLLDAGITDLIISDNPYDCTRLEIGTVPILVTVCKIGDYCLVDPSAEEEVCSTVS 225
Query: 177 SAVSISI-NRQGHICGMIKRGGVGLDPSVILDM----ISVANFVSRQLMDKLDSE 226
V+IS+ N++ ++ G GG + +L+ +S+ ++ L+ L E
Sbjct: 226 MVVAISMKNKEAYLSGSHMTGGGSMHRDTMLNSLNLGLSIGEHLNTHLIKMLKQE 280
>gi|156542409|ref|XP_001601196.1| PREDICTED: exosome complex component RRP42-like [Nasonia
vitripennis]
Length = 291
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 134/233 (57%), Gaps = 9/233 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+TD++ VK E+ P P++GK+ FVDCS A P+FEG+GGE+L+ E+S+ L
Sbjct: 53 IGNTDILVGVKVEIDTPYPDSPNEGKIEFFVDCSANATPSFEGKGGEDLANEISNVLA-- 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +S ++LS L ++ K CW LY+D L++ GNL DA+ A+KAAL +T IP
Sbjct: 111 -LAYQS--PHAMNLSQLSILPHKKCWKLYVDILILECGGNLFDAVAVAVKAALYSTEIPK 167
Query: 121 VHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V A + ++ +SD+ E + DT+ PV+ TL K+G + +VD + EEE S+
Sbjct: 168 VKGAMLDGG--EADIVLSDDIYESEKLDTTNCPVLVTLCKIGDNCVVDPSSEEEMCSSAN 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
+ +S+ G I ++K G L P+ + ++ + V L + + S + + D
Sbjct: 226 IVVSVMPNGRISSIVKMGYGSLQPATLSKILKMGTSVGIDLNNGILSALKSED 278
>gi|114052969|ref|NP_001040497.1| exosc7 protein [Bombyx mori]
gi|95103140|gb|ABF51511.1| exosc7 protein [Bombyx mori]
Length = 277
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 101/188 (53%), Gaps = 7/188 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +K E+ P +PD GK+ VD S A P FEGRGGE L++ +S+ +Q
Sbjct: 53 LANTDILVGIKTEIDTPKPDKPDMGKIEFLVDGSANATPEFEGRGGENLASSISNTMQRA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ DL L +VEGK CW LY+D L++ GN DA+ A KAAL NT IP
Sbjct: 113 YHSSQA-----FDLKQLCIVEGKQCWKLYVDILILECGGNWFDAVSLATKAALFNTRIPL 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V + ++ +F D P++ TL K+G+ +VD + EEES S +S
Sbjct: 168 VKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLCKIGEKCVVDPSAEEES--CSVIS 225
Query: 181 ISINRQGH 188
+ + G+
Sbjct: 226 LIVGITGN 233
>gi|440803698|gb|ELR24581.1| exosome component 7, putative [Acanthamoeba castellanii str. Neff]
Length = 263
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 36/230 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ V+ +L P +P++G E+L+ ++ L
Sbjct: 51 LDNTDVMVGVRVDLAEPKLDRPNEG--------------------AEDLAISITQVL--- 87
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S A +D +SL V+ GK+ W +Y+D LV+ +GN DA+ A +AAL NT IP
Sbjct: 88 ---ARSYKNA-LDWTSLCVIPGKLVWAIYVDALVLDFEGNPYDAISIATRAALHNTMIPR 143
Query: 121 VHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ + E EV+++D ++ + D S VPV TLTK+G ++VDATLEEE M
Sbjct: 144 ITL-------EDGEVEVTDDPQDCTRLDVSNVPVTVTLTKIGTRFLVDATLEEEQCMGVR 196
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
V + I+ +GH+C M G ++P+ + +MI + + R+L++ LD +A
Sbjct: 197 VIVGISPKGHVCSMQMTGHGAVEPTSLYEMIQTSQKLGRELIEGLDKALA 246
>gi|195121612|ref|XP_002005314.1| GI19145 [Drosophila mojavensis]
gi|193910382|gb|EDW09249.1| GI19145 [Drosophila mojavensis]
Length = 296
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 12/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPYAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALYNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEE---SQM 175
V A ++ ISD + + VP++ T+ K+G + +VD T EEE +
Sbjct: 167 -RVTATLLDAGVTDLIISDNPYDCTRIGIDAVPLLVTVCKIGDYCLVDPTAEEEVCSTVS 225
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
N + ++ G GG + +L+ I + + QL + L
Sbjct: 226 MVVSVSMRNNEAYLSGTHMTGGGSMHRDTMLNSIQLGLSMGEQLNNLL 273
>gi|148677124|gb|EDL09071.1| mCG23310, isoform CRA_a [Mus musculus]
Length = 213
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 110/196 (56%), Gaps = 13/196 (6%)
Query: 34 SPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGL 93
S A P FEGRGG++L E+++ L + KS +DL SL + + CW LY+D L
Sbjct: 8 SANATPEFEGRGGDDLGTEIANTLYR-IFNNKSS----VDLRSLCISPREHCWVLYVDVL 62
Query: 94 VISSDGNLLDALGAAIKAALSNTGIPSVHVA--AEAASDEQPEVDISDEEF--LQFDTSG 149
++ GNL DA+ A+KAAL NT IP V V E A D +++SD+ + ++
Sbjct: 63 LLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKD----IELSDDPYDCIRLSVEN 118
Query: 150 VPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMI 209
VP I TL K+G ++VDATL+EE+ +++ +S+ +G + M K G LDP I +M+
Sbjct: 119 VPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMM 178
Query: 210 SVANFVSRQLMDKLDS 225
+ V + L L S
Sbjct: 179 ESSKRVGKVLHVSLQS 194
>gi|413935084|gb|AFW69635.1| hypothetical protein ZEAMMB73_958064 [Zea mays]
Length = 121
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 63/69 (91%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T++IASVKAELG+PS + PDKGKVAIFVDCSPTAEP FEGRG EELSAELS +LQ C
Sbjct: 51 LGATEIIASVKAELGKPSILHPDKGKVAIFVDCSPTAEPLFEGRGSEELSAELSVSLQRC 110
Query: 61 LLGGKSGAG 69
LLGGKSGAG
Sbjct: 111 LLGGKSGAG 119
>gi|195383888|ref|XP_002050657.1| GJ22278 [Drosophila virilis]
gi|194145454|gb|EDW61850.1| GJ22278 [Drosophila virilis]
Length = 296
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 114/224 (50%), Gaps = 12/224 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPQFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPFAFDYRTLCLIPGQQCWKLYIDILILECGGNLYDAVSLAAKAALYNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEE---SQM 175
V A ++ ISD + + VP++ T+ K+G + +VD T EEE +
Sbjct: 167 -RVTATLLDAGVTDLIISDNPYDCTRIGIDAVPLLVTVCKIGDYCLVDPTAEEEVCSTVS 225
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+ + ++ G GG + +L+ I + + QL
Sbjct: 226 MVVSVSMRDNEAYLSGTHMTGGGSMHRDTMLNSIQLGLSIGEQL 269
>gi|194757229|ref|XP_001960867.1| GF11284 [Drosophila ananassae]
gi|190622165|gb|EDV37689.1| GF11284 [Drosophila ananassae]
Length = 296
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 98/174 (56%), Gaps = 9/174 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ PS + P+ GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPSPLAPEYGKLEFFVDCSANATPDFEGRGGSDLAQELILSLQNA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ D SL ++ G+ CW LYID LV+ GNL DA+ A KAAL NT +P
Sbjct: 113 YESPQA-----FDYRSLCLIPGQQCWKLYIDILVLECGGNLHDAVSLAAKAALFNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEE 172
V A ++ ISD + + P++ T+ K+G + +VD T EEE
Sbjct: 167 -RVTATLLDAGITDLIISDNPYDCTRIGIETAPLLVTVCKIGDYCLVDPTAEEE 219
>gi|195488381|ref|XP_002092290.1| GE11745 [Drosophila yakuba]
gi|194178391|gb|EDW92002.1| GE11745 [Drosophila yakuba]
Length = 296
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 98/174 (56%), Gaps = 9/174 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + PD GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPDFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPLAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEE 172
V A ++ ISD + + VP++ T+ K+G + +VD + EEE
Sbjct: 167 -RVTATLLDAGITDLIISDNPYDCTRIGIETVPLLVTVCKIGDYCLVDPSAEEE 219
>gi|194882669|ref|XP_001975433.1| GG20559 [Drosophila erecta]
gi|190658620|gb|EDV55833.1| GG20559 [Drosophila erecta]
Length = 296
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 98/174 (56%), Gaps = 9/174 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPLAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEE 172
V A ++ ISD + + VP++ T+ KVG + +VD + EEE
Sbjct: 167 -RVTATMLDAGITDLIISDNPYDCTRISIETVPLLVTVCKVGDYCLVDPSAEEE 219
>gi|195170324|ref|XP_002025963.1| GL10119 [Drosophila persimilis]
gi|194110827|gb|EDW32870.1| GL10119 [Drosophila persimilis]
Length = 296
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 101/177 (57%), Gaps = 13/177 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +K E+ P + P+ GK+ FVDCS A P FEGRGG +L+ EL AL++
Sbjct: 53 LANTDILVGIKTEIDVPDPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELVLALEN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPLAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALHNTKLPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF----LQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
V + A ++ ISD + L DT VP++ T+ K+G + +VD + EEE+
Sbjct: 168 VTASLLDAG--VTDLIISDNPYDCTRLTIDT--VPLLVTVCKIGDYCLVDPSAEEEA 220
>gi|125811424|ref|XP_001361870.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
gi|54637046|gb|EAL26449.1| GA21043 [Drosophila pseudoobscura pseudoobscura]
Length = 296
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 100/177 (56%), Gaps = 13/177 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ +K E+ P + P+ GK+ FVDCS A P FEGRGG +L+ EL AL++
Sbjct: 53 LANTDILVGIKTEIDVPDPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELVLALEN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPLAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALHNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF----LQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
V A ++ ISD + L DT VP++ T+ K+G + +VD + EEE+
Sbjct: 167 -QVTASLLDAGVTDLIISDNPYDCTRLTIDT--VPLLVTVCKIGDYCLVDPSAEEEA 220
>gi|328767734|gb|EGF77783.1| hypothetical protein BATDEDRAFT_91450 [Batrachochytrium
dendrobatidis JAM81]
Length = 319
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 114/211 (54%), Gaps = 8/211 (3%)
Query: 25 GKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKV 84
G++ V+CSP A + R E++ E + L L +G GIDL L ++ G
Sbjct: 106 GRIVCSVECSPAASIILDSRAIEDMCNEYTQVLNRTL----NGPHGGIDLQKLCIIPGST 161
Query: 85 CWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF-L 143
CW + +D L++ GN+LD + A++ AL NT +P V +D E DI+D+E +
Sbjct: 162 CWVVSVDVLIMDYGGNVLDTVLMAVRGALHNTRLPKTKVEE---TDGHFEFDIADDETEV 218
Query: 144 QFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPS 203
+PV TL+++G +IVDA+ E+ SS +++ +N G ICG+ K G L+PS
Sbjct: 219 LCGRENIPVALTLSRIGSGHIVDASPLEDMCSSSKITVFVNASGCICGVQKTGKGSLEPS 278
Query: 204 VILDMISVANFVSRQLMDKLDSEIAAADADE 234
++DMI A+ + + + LDS + + + D
Sbjct: 279 TLIDMIETASRLGSESLVSLDSILLSEERDR 309
>gi|195029661|ref|XP_001987690.1| GH22060 [Drosophila grimshawi]
gi|193903690|gb|EDW02557.1| GH22060 [Drosophila grimshawi]
Length = 296
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 113/224 (50%), Gaps = 12/224 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ D +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPFAFDYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEE---SQM 175
V A ++ ISD + + VP++ T+ K+G +VD + EEE +
Sbjct: 167 -RVTATLMDAGITDLIISDNPYDCTRIGIDAVPLLVTVCKIGDFCLVDPSAEEEVCSTVS 225
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
N + ++ G GG + +L I + + QL
Sbjct: 226 MVVSVSMRNNEAYLAGTHLTGGGSMHRDTMLSSIQLGVSIGEQL 269
>gi|70606424|ref|YP_255294.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius DSM 639]
gi|449066636|ref|YP_007433718.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius N8]
gi|449068910|ref|YP_007435991.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius Ron12/I]
gi|68567072|gb|AAY80001.1| exosome complex exonuclease RRP43-like protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035144|gb|AGE70570.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius N8]
gi|449037418|gb|AGE72843.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus
acidocaldarius Ron12/I]
Length = 276
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 118/228 (51%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E P P++G + + V+ P A TFE +E S EL+ +
Sbjct: 58 LGNTLVLAGVKLEEDSPYPDTPNQGNLIVNVELLPLAYETFEPGPPDENSIELARIVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ IDLS LV+ GK W L++D V+ DGN+LDA A AA+ +T +P
Sbjct: 118 LRDSKA-----IDLSKLVIAPGKKVWTLWVDVYVLDYDGNILDACMLASIAAIYDTKLPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT-KVGKHYIVDATLEEESQMSSAV 179
V V + E+ I+ EE L PV+T T K+GK+ +VD L+EES + +
Sbjct: 173 VEVEGD-------EIKINKEERLSIPLVNYPVVTVTTAKIGKYVVVDPNLDEESIADAKL 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
SIS ++G I G+ K L I M S A S+ L ++L +I
Sbjct: 226 SISYTKEGTIVGLQKNYSGNLTFKEIDAMESTARATSQFLFEELKKQI 273
>gi|348680463|gb|EGZ20279.1| hypothetical protein PHYSODRAFT_491455 [Phytophthora sojae]
Length = 295
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 112/232 (48%), Gaps = 6/232 (2%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ASVK E+ P P G V + V C P+ GR EEL+ ELS + L
Sbjct: 56 TDVLASVKLEVAPPLPEAPSAGIVQVAVSCCPSVSAKLYGRAVEELNVELSQLMTRLLCS 115
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
S +L ++ G+ W + ID +V S GNL D + AI AAL++T PSV +
Sbjct: 116 CPSA-----ELGKYCIIPGESVWAISIDVMVFESSGNLPDVISMAIYAALNDTVFPSVRL 170
Query: 124 AAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISI 183
D+ EVD P+ TL+K+G ++I D EEE ++ +S+++
Sbjct: 171 VGVEGEDKTIEVDTDPAAGRLMTAQHWPICVTLSKIGDYFITDPLQEEELCTTAQMSVAV 230
Query: 184 NRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADED 235
N +G +CG+ K G ++ + MI A S++L KL E D D
Sbjct: 231 NPEGSVCGVQKSGTGAIEMEEMQQMIDEACARSKELF-KLLQETLREQRDRD 281
>gi|351695721|gb|EHA98639.1| Exosome complex exonuclease RRP42 [Heterocephalus glaber]
Length = 373
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 102/181 (56%), Gaps = 9/181 (4%)
Query: 39 PTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSD 98
P FEGRGG++L E++S L + + +DL SL + + CW LY+D L++
Sbjct: 173 PEFEGRGGDDLGTEIASTLYRIF-----SSRSSVDLQSLCISPREHCWVLYVDVLLLECG 227
Query: 99 GNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTL 156
GNL DA+ A+KAAL NT IP V V + + ++++SD+ + +Q VP I TL
Sbjct: 228 GNLFDAISLAVKAALFNTRIPKVRVLEDEEGSK--DIELSDDPYDCMQLSVENVPCIVTL 285
Query: 157 TKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVS 216
K+G ++VDATL+EE+ +++ +++ G + M K G LDP I +M+ V
Sbjct: 286 CKIGCRHVVDATLQEEACSLASLLVAVTSSGVVTCMRKVGKGSLDPESIFEMMETGKRVG 345
Query: 217 R 217
+
Sbjct: 346 K 346
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 21/79 (26%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD---------CSPTAEPTFEG-------- 43
+G TD++ VKAE+G P +PD+G + FVD C+P +E + +
Sbjct: 55 LGHTDILVGVKAEMGTPKLEKPDEGYLEFFVDWEGLASTSVCNPASEASVDNGLAAALGC 114
Query: 44 --RGGEE--LSAELSSALQ 58
R GE A L SAL+
Sbjct: 115 PYRTGEHSLWQARLRSALR 133
>gi|225718102|gb|ACO14897.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
Length = 289
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 122/233 (52%), Gaps = 18/233 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ VKAEL G + +VDCS A P FEGRGGE+L+ E++S
Sbjct: 53 LSNTDVLVGVKAEL----CEHKPGGGLEFYVDCSANASPVFEGRGGEDLALEIASTPSSS 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG-NLLDALGAAIKAALSNTGIP 119
K + S L V++ + W L++D L++ +G NL D +A+KAAL T IP
Sbjct: 109 YSDNKL-----FNRSILNVLQNRYAWILHVDVLILEVEGGNLFDVASSAVKAALFATQIP 163
Query: 120 SVHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSS 177
VH+ PE+++S++ E + D S PV+ TL ++G I DA+ EE+ S+
Sbjct: 164 KVHIVD--VDGGVPEIELSEDPDECFRLDVSNAPVLVTLNRIGHFCIADASPNEEACSSA 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFV----SRQLMDKLDSE 226
A+ I+++ G I + K G P + D +S A V ++ L KL +E
Sbjct: 222 AMVIAVSPSGRISSLRKIGDGSFHPDTLDDALSTAGDVGMCLNKALFKKLQAE 274
>gi|225709084|gb|ACO10388.1| Exosome complex exonuclease RRP42 [Caligus rogercresseyi]
Length = 288
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 23/235 (9%)
Query: 1 MGSTDVIASVKAEL--GRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQ 58
+ +TDV+ VKAEL RP G + +VDCS A P FEGRGGE+L+ E+SS L
Sbjct: 53 LANTDVLVGVKAELCEDRP-------GGLEFYVDCSANASPEFEGRGGEDLALEISSTLA 105
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG-NLLDALGAAIKAALSNTG 117
+ D S L V + + W L++D L++ +G NL D A+K+AL T
Sbjct: 106 SSYSDPRV-----FDPSVLHVFKNRYAWVLHVDVLILEVEGGNLFDVSSLAVKSALFCTQ 160
Query: 118 IPSVHVAAEAASDEQPEVDISD--EEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
+P VH+ PE+++S+ EE + + SG PV+ +L +VG IVDA+ EE+
Sbjct: 161 VPRVHIVD--VDGGVPEIELSEDPEECFRLNVSGAPVLVSLNRVGHFVIVDASPHEEACS 218
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFV----SRQLMDKLDSE 226
S+A+ +++ G I + K G + D ++ A V ++ L KL E
Sbjct: 219 SAAIVVAVTPSGRISSLRKVGSGSFHIDTLEDALATAGHVGTSLNKALFQKLQQE 273
>gi|28573444|ref|NP_725517.2| Rrp42 [Drosophila melanogaster]
gi|28380797|gb|AAF58076.3| Rrp42 [Drosophila melanogaster]
gi|85857716|gb|ABC86393.1| IP10364p [Drosophila melanogaster]
Length = 296
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 9/174 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +LQ+
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLQN- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 112 ----AYESPLAFNYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEE 172
V A ++ ISD + + VP++ T+ K+G + +VD + EEE
Sbjct: 167 -RVTATMLDAGITDLIISDNPYDCTRIGIETVPLLVTVCKIGDYVLVDPSAEEE 219
>gi|301097627|ref|XP_002897908.1| exosome complex exonuclease RRP42-like protein [Phytophthora
infestans T30-4]
gi|262106656|gb|EEY64708.1| exosome complex exonuclease RRP42-like protein [Phytophthora
infestans T30-4]
Length = 295
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 113/233 (48%), Gaps = 8/233 (3%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+ASVK E+ P P+ G V + V C P+ GR EEL+ ELS + L
Sbjct: 56 TDVLASVKLEVASPLPEDPNAGIVQVDVSCCPSVSAKLYGRAVEELNVELSQLMTRLLCS 115
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
S +L ++ G+ W + ID +V S GNL D + AI AAL++T PSV +
Sbjct: 116 CPSA-----ELEKYCIIPGESVWSISIDVMVFESSGNLPDVISMAIYAALNDTIFPSVRL 170
Query: 124 AAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISI 183
D+ EVD P+ TL+K+G ++I D EEE ++ +S+++
Sbjct: 171 VGVEGEDKTIEVDTDPAAGKLMMAQQWPICVTLSKIGDYFITDPLQEEELCTTAQMSVAV 230
Query: 184 NRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS---EIAAADAD 233
N G++CG+ K G ++ + MI A S+ L L E A DA+
Sbjct: 231 NPDGNVCGVQKSGNGSIEMEEMQQMIDEACARSKDLFKLLQKALLEQRARDAN 283
>gi|255086427|ref|XP_002509180.1| predicted protein [Micromonas sp. RCC299]
gi|226524458|gb|ACO70438.1| predicted protein [Micromonas sp. RCC299]
Length = 243
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 101/187 (54%), Gaps = 25/187 (13%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLL 62
+TDVI +VKA++G P P G++ V+ S A+ + GRGGE L EL+ AL+ L
Sbjct: 57 TTDVIVAVKADIGTPPKDNPTHGRIQCAVELSAIADVDYMGRGGETLGVELARALERSLT 116
Query: 63 G-----------------------GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG 99
G K G GA +D+S+L + +GK CW L DG+V++SDG
Sbjct: 117 GQTTGGMGSLADAVAGERGADARVSKHGPGAALDMSTLGIQKGKTCWLLQCDGVVLTSDG 176
Query: 100 NLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFL--QFDTSGVPVITTLT 157
++LDAL A K AL++ IP V A +D+ E+++ D+ + D SGVP+I T
Sbjct: 177 SVLDALSIATKCALADAKIPKVTAVAGPDADDPAELELDDDPAACSKLDVSGVPLIVTCV 236
Query: 158 KVGKHYI 164
VGK +
Sbjct: 237 GVGKFIL 243
>gi|408382268|ref|ZP_11179813.1| exosome complex RNA-binding protein Rrp42 [Methanobacterium
formicicum DSM 3637]
gi|407814924|gb|EKF85546.1| exosome complex RNA-binding protein Rrp42 [Methanobacterium
formicicum DSM 3637]
Length = 266
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 12/221 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +I K ++G P P+ G + + P A P FE E S ELS C
Sbjct: 53 IGNTQIIVGAKPQIGEPFPDTPNVGVLITNSELVPMAAPNFEAGPPNETSVELSRVTDRC 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ GK +DL LV++ GK W +++D VI DGNL+DA AAL NT IPS
Sbjct: 113 VREGKV-----VDLEKLVIIPGKKVWMIFLDLHVIDYDGNLMDAAVLGSVAALMNTKIPS 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ E EV I E + + P++ TL K+G + D +LEE+ + + +S
Sbjct: 168 TTI-------EDDEVVIDYETMVPIPIAEQPLMCTLAKIGGELVADPSLEEDDVLDARIS 220
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
I + G IC M K G V L IL + +A +++L +
Sbjct: 221 IGVRVDGSICAMQKGGSVPLTREEILKAVKIAQTKTKELRE 261
>gi|56758238|gb|AAW27259.1| SJCHGC04772 protein [Schistosoma japonicum]
Length = 277
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 10/223 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VK E+G+PS + ++G++ I V+C PTA +G EL+ L + LQ
Sbjct: 53 IGETFIVCCVKMEVGKPSLTRLNEGRIEINVECYPTATYRCNEKGASELAERLKTTLQ-- 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ I+L+SL + G+ CW +YID L++ GNLLDA IKAAL N +
Sbjct: 111 ----STYQSEFINLNSLCIQRGRQCWVIYIDLLILEGAGNLLDASSLVIKAALLNATQSN 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+++ +D + SD E + +P+ T+ K+G YI+DAT EEE+ S +S
Sbjct: 167 SFLSSVFRND----TNTSDTEIQNCNEDMLPLFVTVHKIGNAYIIDATKEEEACSLSRLS 222
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ I G I + G I++M +A V ++L L
Sbjct: 223 LVIYPDGSIGFLEHDGCCSCQLESIVEMSQLATTVGKELNHAL 265
>gi|195583790|ref|XP_002081699.1| GD11151 [Drosophila simulans]
gi|194193708|gb|EDX07284.1| GD11151 [Drosophila simulans]
Length = 281
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 9/174 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +L++
Sbjct: 38 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLKN- 96
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +L ++ G+ CW LYID L++ GNL DA+ A KAAL NT +P
Sbjct: 97 ----AYESPLAFNYRTLCLIPGQQCWKLYIDILILECGGNLHDAVSLAAKAALFNTKLP- 151
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEE 172
V A ++ ISD + + VP++ T+ K+G + +VD + EEE
Sbjct: 152 -RVTATMLDAGITDLIISDNPYDCTRIGIETVPLLVTVCKIGDYVLVDPSAEEE 204
>gi|225718446|gb|ACO15069.1| Exosome complex exonuclease RRP42 [Caligus clemensi]
Length = 250
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 14/199 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TDV+ VKAEL G + +VDCS A P FEGRGGE+L+ E++S L
Sbjct: 53 LSNTDVLVGVKAEL----CEHKPGGGLEFYVDCSANASPVFEGRGGEDLALEIASTLSSS 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG-NLLDALGAAIKAALSNTGIP 119
K + S L V + + W L++D L++ +G NL D +A+KAAL T IP
Sbjct: 109 YSDNKL-----FNRSILNVFQNRYAWILHVDVLILEVEGGNLFDVASSAVKAALFATQIP 163
Query: 120 SVHVAAEAASDEQPEVDISDE--EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSS 177
VH+ PE+++S++ E + D S PV+ TL ++G I DA+ EE+ S+
Sbjct: 164 KVHIVD--VDGGVPEIELSEDPDECFRLDVSNAPVLVTLNRIGHFCIADASPNEEACSSA 221
Query: 178 AVSISINRQGHICGMIKRG 196
A+ I+++ G I + K G
Sbjct: 222 AMVIAVSPSGRISSLRKIG 240
>gi|325187967|emb|CCA22510.1| exosome complex exonuclease RRP42like protein putati [Albugo
laibachii Nc14]
Length = 298
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 9/199 (4%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPT-AEPTFEGRGGEELSAELSSALQHCLL 62
TDV+ASVK E+ PS P+ G + + V C P+ + GR +E++ ELS +Q
Sbjct: 55 TDVLASVKLEVLSPSLEAPNSGVLNVNVTCFPSISSKITNGRALDEINIELSQLMQRIFT 114
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
KS IDL+ +V + W +++D +V S G+L D + A+ AAL T P V
Sbjct: 115 SHKS-----IDLNKFCIVPSQFVWGIFVDVVVYESTGSLPDLISIAMYAALKKTLFPCVR 169
Query: 123 VAAEAASDE--QPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ ++ Q E D + E+L T P+ TT+ K+G + ++D TLEEE +S+
Sbjct: 170 MLGVEGDEKILQVERDPAAGEYLA-ATVCFPLCTTICKIGNYSVMDPTLEEELCVSTQNV 228
Query: 181 ISINRQGHICGMIKRGGVG 199
+++NR+G ICG+ KR G G
Sbjct: 229 VALNREGSICGIQKRYGDG 247
>gi|256066133|ref|XP_002570477.1| exonuclease [Schistosoma mansoni]
gi|353231507|emb|CCD77925.1| putative exosome complex exonuclease rrp42 (ribosomal rna
processing protein 42) [Schistosoma mansoni]
Length = 254
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 12/224 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VK E+G+PS +G++ I V+C PTA + EL L + LQ
Sbjct: 30 IGETFIVCCVKMEVGKPSLTNTSEGRIEINVECYPTATHRCNEKAASELEERLKTTLQ-- 87
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN-TGIP 119
+ IDLS L + G+ CW +YID L++ GNLLDA +KAAL N T +
Sbjct: 88 ----SAYQLKFIDLSPLCIQRGRQCWVIYIDLLILEGAGNLLDASSLVVKAALLNATQLN 143
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
S+ ++ + E E + QF +P+ T+ K+GK Y++DA+ EEE+ S +
Sbjct: 144 SLLLSVFQNNSESLEAGVQ-----QFHGDMLPLFITVHKIGKAYLIDASKEEEACSLSRL 198
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
S+ I G I + + G I++M +A+ V ++L L
Sbjct: 199 SLVIYPDGSIGSLEQDGCCSCQLESIVEMSQLASIVGKKLNHAL 242
>gi|115947457|ref|XP_794197.2| PREDICTED: exosome complex component RRP42-like, partial
[Strongylocentrotus purpuratus]
Length = 209
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 94/162 (58%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
+D SL V+ G+ W LY D +V+ GNLLDA+ A+KAAL NT IP V V + E
Sbjct: 40 LDYKSLCVIAGQCVWTLYADIVVLECGGNLLDAIALAVKAALYNTRIPLVTVHKDMDGTE 99
Query: 132 QPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICG 191
+V + +F+ DT +PV+ T+T VG +IVDATLEEE+ + + ++N++G I G
Sbjct: 100 DIDVSSNPHDFVTLDTKNLPVLVTVTMVGSGHIVDATLEEEACSMACIVAAVNKEGAIDG 159
Query: 192 MIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
M+K+G L I M++ A + + L L+ ++ +D
Sbjct: 160 MVKKGSGSLTIDSIYKMLTSAKQIGKDLNKSLEDFLSKKGSD 201
>gi|312071046|ref|XP_003138427.1| 3' exoribonuclease [Loa loa]
gi|307766409|gb|EFO25643.1| 3' exoribonuclease [Loa loa]
Length = 307
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 126/247 (51%), Gaps = 27/247 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GSTD++ VKAEL + + ++ FVDCS A P F GRGGEE + ELS+AL
Sbjct: 52 IGSTDLLIGVKAELISVENIALYRNRLNFFVDCSANATPLFAGRGGEEFADELSAALD-- 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
DL L++ V W L++D +++ DGN++DA G +KAAL +T I
Sbjct: 110 --AAYDNNYVLPDLKKLILSPMHV-WKLFVDIVLLQCDGNVIDAAGLGVKAALKDTEISK 166
Query: 121 VHVAAEAASDEQPEVDISDEE-FLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V V A + + +D+ D+ + +TS VP+ ++ ++G IVD +L EE+ ++V
Sbjct: 167 VIV--RPADEGKYTIDLPDDNTVWKLNTSRVPLFVSVNRLGSAKIVDNSLAEEACTRTSV 224
Query: 180 SIS------------------INRQGHICGMIKR-GGVGLDPSVILDMISVANFVSRQLM 220
I+ + R G + +++ GG L+ + +MIS+ RQL
Sbjct: 225 WIAAAPHFVSDTDHNKSNQSVVKRNGGVITFMRQCGGGTLEVDSLEEMISIGLKAVRQLH 284
Query: 221 DKLDSEI 227
+ LD +
Sbjct: 285 EALDRRL 291
>gi|209876656|ref|XP_002139770.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209555376|gb|EEA05421.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 272
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 17/223 (7%)
Query: 5 DVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGG 64
D++ ++K E+ P+ P G + I +DC + E+ + +LS+ +
Sbjct: 56 DILTTIKCEVSSPTK-NPTWGDIIINIDCP------INDKNDEDYTLDLSNTI------- 101
Query: 65 KSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVA 124
K DLS L ++ +CW+++ID ++IS+ GN+LD L +I AL N+ IP V
Sbjct: 102 KDLCFNNFDLSKLCILSNYLCWNIFIDIMIISNGGNILDWLVFSIHCALRNSRIPQVTAK 161
Query: 125 AEAASDEQP---EVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSI 181
E E+ +V+ EE + F G+P++ T + + D ++EE+ + ++I
Sbjct: 162 VEIEDGEEKSNLQVNPLIEEGIPFPIKGIPLVITAGYIRNKIVWDMNIQEEACAKAIIAI 221
Query: 182 SINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
S++ GH CG+ K V + +I +IS AN S L + LD
Sbjct: 222 SVDEYGHCCGIKKLNSVCFEFPLIKTLISSANVTSNTLFNILD 264
>gi|170290982|ref|YP_001737798.1| exosome complex RNA-binding protein Rrp42 [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175062|gb|ACB08115.1| 3' exoribonuclease [Candidatus Korarchaeum cryptofilum OPF8]
Length = 268
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 13/213 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VKA+LG P PDKG + P A PTFE +E + EL+ +
Sbjct: 55 LGETQVLVGVKADLGEPFPDTPDKGVFVSNAELLPVASPTFEPGPPDEGAIELARVVDRA 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL SLV++ GK+ + +++D V+ DGNL D+L A AL + IP
Sbjct: 115 I-----RSADAIDLGSLVILPGKLVYMIFLDMYVLDYDGNLEDSLTLASLIALGRSEIPE 169
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V + E E+++ + + + + +P+ + K+G ++D TLEEES ++++
Sbjct: 170 VELK------ENGEIEVKESK-RKLELKDIPINFSFVKIGSKILLDPTLEEESVSDASIT 222
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
++IN+ G +C + KR G IL++++VA
Sbjct: 223 VAINKDGKVCSVQKRHGT-FTVEEILNIVNVAR 254
>gi|15678709|ref|NP_275825.1| exosome complex RNA-binding protein Rrp42 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336572|sp|O26778.1|ECX2_METTH RecName: Full=Probable exosome complex exonuclease 2
gi|295321489|pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321491|pdb|2WNR|C Chain C, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321493|pdb|2WNR|E Chain E, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621767|gb|AAB85187.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 271
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 113/225 (50%), Gaps = 12/225 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +I VK ++G P P+ G + + P A PTFE +E S ELS + C
Sbjct: 55 LGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRC 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L ++EG W L++D +I DGNL DA A AAL +T IP
Sbjct: 115 IRESRM-----IDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIP- 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
AA E EV I+ E+ + ++ T K+G ++D +LEEE +++ +S
Sbjct: 169 ------AAEVEDGEVVINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARIS 222
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
I + +G IC M K G L +L +S+A QL++ LD
Sbjct: 223 IGVTEEGSICAMQKGGEGPLTRDDVLKAVSIAVEKVPQLIEYLDK 267
>gi|332796516|ref|YP_004458016.1| 3' exoribonuclease [Acidianus hospitalis W1]
gi|332694251|gb|AEE93718.1| 3' exoribonuclease [Acidianus hospitalis W1]
Length = 276
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 122/229 (53%), Gaps = 15/229 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P P++G + + V+ P A TFE +E + ELS +
Sbjct: 58 LGDTTVLAGVKVEPEEPFEDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELSRVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L KS IDLS LV+ GK W +++D V+ GN+LDA A +AL +T +P
Sbjct: 118 LRDSKS-----IDLSKLVIEPGKKIWTVWVDIYVLDYGGNILDACTLAAVSALYDTRLPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V E E+ I EE + PV+T ++ K+GKH +VD L+EE M + +
Sbjct: 173 V-------VKEGDEIKIIKEEKGEKLPMNFPVVTVSVAKIGKHLVVDPDLDEEGIMDAKI 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMI-SVANFVSRQLMDKLDSEI 227
S+S +G I G I++ G+G +D + ++A VS++L+++L +I
Sbjct: 226 SLSYTPEGRIVG-IQKTGIGTFTLTEIDNVETLARSVSQKLLEELKKQI 273
>gi|410721457|ref|ZP_11360792.1| RNase PH-related exoribonuclease [Methanobacterium sp. Maddingley
MBC34]
gi|410598914|gb|EKQ53477.1| RNase PH-related exoribonuclease [Methanobacterium sp. Maddingley
MBC34]
Length = 266
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 12/223 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ K ++G P P+ G + + P A P FE E S ELS C
Sbjct: 53 IGKTQIVVGAKPQIGEPFPDTPNVGVLITNSELLPMAAPNFEAGPPNETSVELSRVTDRC 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ GK+ +DL LV++ GK W +++D ++ DGNL+DA AAL NT IPS
Sbjct: 113 IREGKT-----VDLEKLVIIPGKKVWMIFLDLHIVDYDGNLMDAAVLGSLAALMNTKIPS 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ + EV I + P++ T+ K+G + D +LEE+ + + +S
Sbjct: 168 TTIEGD-------EVVIDYGTMVPIPIKEQPLMCTMAKIGGELVADPSLEEDDVLDARIS 220
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
I + G IC M K G V L IL + +A +++L + +
Sbjct: 221 IGMRVDGSICAMQKGGSVPLTREEILKAVEMAQKKTKELRENI 263
>gi|242399325|ref|YP_002994749.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
gi|242265718|gb|ACS90400.1| Probable exosome complex exonuclease 2 [Thermococcus sibiricus MM
739]
Length = 269
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K ELG P PD G + V+ P A PTFE +E + EL+ +
Sbjct: 51 LGNTQVLVGIKVELGEPFPDLPDMGVITTNVEFVPLASPTFEPGPPDESAIELARIIDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ IDL LV+V GK+ ++ID V+ DGNLLDA G AAL +T IP
Sbjct: 111 IRESQA-----IDLEKLVIVPGKLVRVIFIDVHVLDHDGNLLDASGIGAIAALLSTKIPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V +E+ E + EE+ + +P+ TL K+G + +VD EEE M ++
Sbjct: 166 VD------YNEEIEEVVMLEEYEKLPVKRIPIPVTLAKIGGNLVVDPNFEEEQVMDGKIT 219
Query: 181 ISINRQGHICGMIKRGG 197
I+ + G+I + K G
Sbjct: 220 ITTDENGYISAVQKSEG 236
>gi|304314829|ref|YP_003849976.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588288|gb|ADL58663.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 267
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +I VK ++G P P+ G + + P A PTFE +E S ELS + C
Sbjct: 51 LGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRC 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L ++EG W L++D +I DGNL DA A AAL +T IP+
Sbjct: 111 VRESQM-----IDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPA 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V E EV + E + ++ T K+G I+D LEEE +++ +S
Sbjct: 166 AEV-------EDGEVLVDRENMQPLPINRKALMCTFAKIGDEIILDPCLEEEDILTARLS 218
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
I + G IC M K G L +L +S+A QL++ LD +A
Sbjct: 219 IGVTEDGSICAMQKGGEGALTRDDVLRAVSIAREKVPQLIEYLDKSMA 266
>gi|374633081|ref|ZP_09705448.1| RNase PH-related exoribonuclease [Metallosphaera yellowstonensis
MK1]
gi|373524565|gb|EHP69442.1| RNase PH-related exoribonuclease [Metallosphaera yellowstonensis
MK1]
Length = 281
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 13/234 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P P +G + + + P A TFE +E + ELS +
Sbjct: 58 LGDTTVLAGVKIEEDEPYPDTPAQGNLVVNAELLPLAYETFEPGPPDENAIELSRVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L KS IDLSSLV+ EGK W +++D V+ GN+LDA A AAL +T +P
Sbjct: 118 LRDSKS-----IDLSSLVIEEGKRVWTVWVDISVLDYGGNVLDACTLAAVAALYDTKLPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V E V I+ EE + PV+T T+ K+GK ++D LEEE M + +
Sbjct: 173 V-------VKEDGSVKINKEEKVVSFPLKYPVVTVTVAKIGKFLVIDPDLEEEGIMDAKI 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
S S GHI G+ K G + S+A+ S++L ++L ++ D
Sbjct: 226 SFSYINDGHIVGIQKSGEGSFSSQEVEAAESMASLTSQRLFEELKKYVSIVSGD 279
>gi|325959905|ref|YP_004291371.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
gi|325331337|gb|ADZ10399.1| 3' exoribonuclease [Methanobacterium sp. AL-21]
Length = 263
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 24/225 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +I K ++G P P+ G + + P A P FE +E S ELS C
Sbjct: 52 IGNTQIIIGAKPQIGTPFGDTPNVGVLMTNTELLPMAAPNFESGPPDENSVELSRVTDRC 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G+ +DL L +V G+ W +++D V+ DGNL+DA AAL NT +P
Sbjct: 112 IREGEV-----VDLEKLCIVPGEKVWMIFLDLHVVDYDGNLMDAAVLGSVAALMNTRLPE 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT------SGVPVITTLTKVGKHYIVDATLEEESQ 174
+ I DE L +D + +++T K+G+ I+D +LEEE
Sbjct: 167 AKI-------------IDDEVVLDYDNLIPLPINDTALMSTFAKIGEELIIDPSLEEEEV 213
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
M + +SI I + G+IC M K G L +L +S+A + +L
Sbjct: 214 MGARLSIGITKDGNICAMQKGGEKTLTQEEVLKAVSIAKIKTAEL 258
>gi|67476142|ref|XP_653674.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56470674|gb|EAL48311.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|407034971|gb|EKE37468.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
gi|449710101|gb|EMD49236.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 265
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 14/224 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK ELG PS + P+ G+ + V T R E ++
Sbjct: 51 LGKTEVVVGVKCELGEPSVLTPESGRYNVLVK----QVGTMTSRDVE---------IEKM 97
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L AG + L L V++GK+CW +Y+D +V+ DGN++D G A++AAL NT IP
Sbjct: 98 ILVSLENAGKDM-LQELCVLKGKLCWIIYVDVVVVEDDGNVMDCTGLAVRAALLNTLIPI 156
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V + + Q ++D + +F +F VP+ +L + K +I D + EE S ++
Sbjct: 157 VNVISGDSDTVQVDIDKDNVQFKKFKPESVPLCVSLIQFEKEFIADPSKVEEKCNGSEIT 216
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
+I G +CG+ K G + DMI A + +L +LD
Sbjct: 217 TAITSNGKVCGIQKGGNGCFKTEEMYDMIIQAQMIGLKLFKELD 260
>gi|167392099|ref|XP_001740016.1| exosome complex exonuclease RRP42 [Entamoeba dispar SAW760]
gi|165896056|gb|EDR23596.1| exosome complex exonuclease RRP42, putative [Entamoeba dispar
SAW760]
Length = 265
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 14/224 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK ELG PS + P+ G+ + V T R E ++
Sbjct: 51 LGKTEVVVGVKCELGEPSILTPESGRYNVLVK----QVGTMTSRDVE---------IEKM 97
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L AG + L L V++GK+CW +Y+D +V+ DGN++D G A++AAL NT IP
Sbjct: 98 ILVSLENAGKDM-LQELCVLKGKLCWIIYVDVVVVEDDGNVMDCTGLAVRAALLNTLIPI 156
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+V + + Q ++D + +F +F VP+ +L + K +I D + EE S ++
Sbjct: 157 VNVISGDSDTVQVDIDKDNVQFKKFKPESVPLCVSLVQFEKEFIADPSKVEEKCNGSEIT 216
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
+I G +CG+ K G + DMI A + +L +LD
Sbjct: 217 TAITSNGKVCGIQKGGNGCFKTEEMYDMIIQAQMIGLKLFKELD 260
>gi|302348935|ref|YP_003816573.1| exosome complex exonuclease 2 [Acidilobus saccharovorans 345-15]
gi|302329347|gb|ADL19542.1| Probable exosome complex exonuclease 2 [Acidilobus saccharovorans
345-15]
Length = 280
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 11/229 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK E+G P P++G + + + +P A PTFE +E + ELS +
Sbjct: 58 LGNTQVLVGVKLEVGIPYRDTPNEGVLQVNSELTPVASPTFEPGPPDENAVELSRVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ IDLSSLV+ G+ W L+ID V+ DGN DA + AAL NT +P
Sbjct: 118 LRDPKA-----IDLSSLVIRPGEKAWVLWIDIYVLDYDGNYFDASMLGVMAALMNTKVP- 171
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
E E E+ I+ E+ + + T KVG + ++D ++EE S +
Sbjct: 172 -----EYEETESGEIIINREKGTPLKLNRRVALVTSVKVGDYILIDPNIDEELLADSRMV 226
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
I+ + QG I GM K G G +L +I ++ S+ LD + +
Sbjct: 227 IAFDEQGTIVGMQKSGMGGYTRDELLKVIDISRNASQVYFKLLDQALQS 275
>gi|20093818|ref|NP_613665.1| exosome complex RNA-binding protein Rrp42 [Methanopyrus kandleri
AV19]
gi|29336820|sp|Q8TYC2.1|ECX2_METKA RecName: Full=Probable exosome complex exonuclease 2
gi|19886741|gb|AAM01595.1| Predicted exosome subunit, predicted exoribonuclease related to
RNase PH [Methanopyrus kandleri AV19]
Length = 267
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 13/207 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ VK E+GRP P++G +A+ + P A+P+FE +E + ELS +
Sbjct: 53 LGNTQLVVGVKLEVGRPYPDSPNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L + EG+ CW ++D V+ DGNL DA +ALS T +P
Sbjct: 113 IRESEM-----IDLEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
AE DE V++ +E+ + P+ T+ KVG++ +VD LEEE M + ++
Sbjct: 168 ----AEVVDDE---VEVMEEDTEPLAINDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLT 220
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILD 207
+++ G +C +++G +G P +L+
Sbjct: 221 VTVTESGEVCA-VQKGELGDFPEHLLE 246
>gi|308809605|ref|XP_003082112.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (ISS)
[Ostreococcus tauri]
gi|116060579|emb|CAL55915.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (ISS)
[Ostreococcus tauri]
Length = 314
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
G GIDL SL V G+ W L +D + G++LDAL A++ AL++T IP V + +
Sbjct: 130 GGGIDLRSLCVRPGRARWTLAVDAVCACDRGSMLDALSVAVRGALADTKIPKVSLVGVGS 189
Query: 129 SDEQPEVDISDE--EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQ 186
E E++I D+ + D S V+ T TK+GKH +VDAT EEE+ +++S+ ++R
Sbjct: 190 DGEGGELEIDDDPDACTRVDVSRCGVVATTTKIGKHGVVDATDEEEACAEASMSVGVDRD 249
Query: 187 GHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA----DEDE 236
G +CG GG LD M ++ V +L++ +D+ +A A A DEDE
Sbjct: 250 GMVCGEFTTGGETLDRGTADAMRKLSCRVGVELIEAMDAFLATAVAANKIDEDE 303
>gi|402587188|gb|EJW81123.1| 3' exoribonuclease, partial [Wuchereria bancrofti]
Length = 280
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 27/247 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GSTD++ VKAEL ++ + ++ FVDCS A P F GRGG+E + ELS+AL
Sbjct: 25 IGSTDLLIGVKAELISVESIAIYRNRLNFFVDCSANATPLFAGRGGDEFADELSAALD-- 82
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
DL L++ W L++D +++ DGN++DA G +KAAL +T I
Sbjct: 83 --AAYDNNYVLPDLKKLILSPMHA-WKLFVDIVLLQCDGNVIDAAGLGVKAALKDTEISK 139
Query: 121 VHVAAEAASDEQPEVDISDEE-FLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V V A + + +D+ D+ + DTS VP+ ++ ++G IVD +L EE+ ++V
Sbjct: 140 VIV--RPADEGKYTIDLPDDNTVWKLDTSRVPLFVSVNRLGTAKIVDNSLAEEACTRTSV 197
Query: 180 SISI---------NRQGHICG----------MIKRGGVGLDPSVILDMISVANFVSRQLM 220
I++ + Q + C M + GG L+ + +MIS+ QL
Sbjct: 198 WIAVAPQFVSDTSHNQSNQCAVKCDGSIITFMRQCGGGTLEIDSLEEMISIGLKAVHQLH 257
Query: 221 DKLDSEI 227
+ LD +
Sbjct: 258 EALDRRL 264
>gi|452825084|gb|EME32083.1| exosome complex component RRP42 [Galdieria sulphuraria]
Length = 275
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 8/224 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK E+G D ++ V+CS +A F GR E S+EL +AL+
Sbjct: 51 LGETEVLVGVKVEVGDVVESSNDNVQLLFTVECSGSASADFLGREAESWSSELQNALESA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
A D L +V GK CW +D LV+ + GN++DA+ A + ALS T +P
Sbjct: 111 Y-----RAANVFDDERLSLVPGKFCWLFKVDILVLDTGGNMMDAISMATRTALSTTLVPR 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
VH+ S E E+D + + P T + +G H+++D +++EE+ +S
Sbjct: 166 VHIVQSEGSFEL-EIDDNPDACDTLKVEKAPTFLTFSLIGNHFVLDPSIQEETCARGKLS 224
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
++++ G IC + G LD + ++++ + L+++LD
Sbjct: 225 VAVDANGDICHVYSFG--LLDAVELSRLLTIIKKTGKVLLNRLD 266
>gi|312137049|ref|YP_004004386.1| ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM
2088]
gi|311224768|gb|ADP77624.1| ribosomal RNA-processing protein RRP42 [Methanothermus fervidus DSM
2088]
Length = 270
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 16/227 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK +G P P+ G + + P A PTFE +E S EL+ + C
Sbjct: 56 LGDTQVLVGVKPTIGEPFPDNPNLGIIITNSELLPMASPTFEPGPPDERSIELARVVDRC 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA--LGAAIKAALSNTGI 118
+ +DL L ++EG+ W L+ID ++ DGNL DA LGA AAL +T +
Sbjct: 116 I-----RESNMLDLEKLCIIEGEKVWILFIDLHILDYDGNLFDASVLGAV--AALMDTKL 168
Query: 119 PSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
P V + E EV I D D + T K+G ++D +LEEE +++
Sbjct: 169 PKVSI-------EDDEVVIDDSSVELLDIKDKVAMCTFAKIGDELVLDPSLEEEEILTAR 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+SI +N +G IC M K G L I I++A + +L+ L++
Sbjct: 222 LSIGMNSEGKICAMQKGGKGSLSREDISKAINIAEEKTPELLQHLEN 268
>gi|57641568|ref|YP_184046.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
kodakarensis KOD1]
gi|73919277|sp|Q5JIR7.1|ECX2_PYRKO RecName: Full=Probable exosome complex exonuclease 2
gi|57159892|dbj|BAD85822.1| exosome subunit Rrp42p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 272
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 102/190 (53%), Gaps = 11/190 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +KAELG P PD+G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGDTQVLVGIKAELGEPFPDLPDRGVITTNVELVPLASPTFEPGPPDENAIELARVVDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DL LV+V GK+ ++ID V+ GNLLDA G AAL +T +P
Sbjct: 114 IRESQA-----VDLEKLVIVPGKLVRVIFIDVHVLDHGGNLLDASGIGAIAALLSTKLPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+ ++E EV+I D E+ + VP+ T K+G +VD +L+EE M ++
Sbjct: 169 VNY-----NEETGEVEILD-EYEPLPVNHVPIPVTFAKIGNSIVVDPSLDEERVMDGRLT 222
Query: 181 ISINRQGHIC 190
I+ + GHI
Sbjct: 223 ITTDETGHIS 232
>gi|194381296|dbj|BAG58602.1| unnamed protein product [Homo sapiens]
Length = 164
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT
Sbjct: 112 IFNNKS----SVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNT 163
>gi|397475927|ref|XP_003809367.1| PREDICTED: exosome complex component RRP42-like [Pan paniscus]
Length = 164
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT
Sbjct: 112 IFNNKS----SVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNT 163
>gi|15920654|ref|NP_376323.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus tokodaii str.
7]
gi|29336897|sp|Q975G9.1|ECX2_SULTO RecName: Full=Probable exosome complex exonuclease 2
gi|342306197|dbj|BAK54286.1| exosome core subunit Rrp42 [Sulfolobus tokodaii str. 7]
Length = 275
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 114/228 (50%), Gaps = 17/228 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGDTMVLAGVKLEEEEPFPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DLS LV++ GK W ++D V+ GN+LDA A AAL NT +P
Sbjct: 118 LRDSKA-----VDLSKLVIIPGKKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + E V I EE PV+T T+ K+GK+ +VD +L+EES +
Sbjct: 173 VEI-------EGDNVKIIKEEKTDVTPIAYPVVTVTVAKIGKYLVVDPSLDEESIADVKI 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S + G I GM ++ G S+ L + VA ++R KL E+
Sbjct: 226 SFSYVQDGRIVGM-QKSNFG---SLSLQEVDVAESLARSASQKLFEEL 269
>gi|324510452|gb|ADY44370.1| Exosome complex exonuclease RRP42 [Ascaris suum]
Length = 303
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 22/250 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ STD++ VKAEL + + ++ FVDCS A P F GRGGE+L+ E++SAL
Sbjct: 52 LASTDLLIGVKAELTVVEDFEHYRNRINFFVDCSANATPLFVGRGGEDLAVEVTSALD-- 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
DL L++ W LY+D +++ GN+LDA G +KAAL NT I +
Sbjct: 110 --VAYDNPYVLPDLKKLILSPMHA-WKLYVDIVILECGGNILDAAGIGVKAALRNTEICN 166
Query: 121 VHVAAEAASDEQPEVDI-SDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V V A + + VD+ +D + D S P+ ++ K+G+ +VDA+L EE+ V
Sbjct: 167 VIV--RPADEGKCAVDLANDNTVWKMDVSRAPLFVSVHKLGEANLVDASLTEEACSRCTV 224
Query: 180 SISI-------------NRQGHICGMIKR-GGVGLDPSVILDMISVANFVSRQLMDKLDS 225
S+++ N + I M+++ GG L+ + +M+ + + +L LD
Sbjct: 225 SVAVSPTPECSQDGTMLNEEDCIVTMVRQSGGGSLEMDSLDEMVRMGVRMVDELQKALDK 284
Query: 226 EIAAADADED 235
+ D D
Sbjct: 285 RLKEESEDID 294
>gi|397652060|ref|YP_006492641.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus
COM1]
gi|393189651|gb|AFN04349.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus
COM1]
Length = 277
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KA LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGNTQVLVGIKATLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+ GK+ ++ID V+ DGNL+DA+G AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIAPGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V ++E EV+I +E+ +P+ T K+G + +VD TLEEE M ++
Sbjct: 169 V-----LYNEETGEVEILEEKE-PLPVEKIPIPVTFAKIGNYLVVDPTLEEEQIMDGRLT 222
Query: 181 ISINRQGHICGMIKRGG 197
I+ + GHI + K G
Sbjct: 223 ITTDETGHISAVQKSEG 239
>gi|440292961|gb|ELP86133.1| exosome complex exonuclease RRP42, putative [Entamoeba invadens
IP1]
Length = 265
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 16/225 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ +K EL P A ++G+ + V + G + ++S ++
Sbjct: 51 LGRTEVVVGIKCELEEPQATSSNEGRYTVLVR-----------KSGADNVRDVS--IEQM 97
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ AG + L L V GK+CW +Y+D +V+ DGN++D + A++AAL +T IP
Sbjct: 98 ITVSLENAGKEM-LKKLCVSPGKLCWVVYVDAIVVEDDGNVMDCVSLAVRAALLSTLIPV 156
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V V + A + Q +++ + +F+ F+ S +PV +L + + Y+VD + EE ++
Sbjct: 157 VTVISGDAEEVQIDINKDNVQFIHFEPSALPVCVSLVLLDEVYVVDPSHTEEMCSGGVLT 216
Query: 181 ISINRQGHICGMIKRGGVG-LDPSVILDMISVANFVSRQLMDKLD 224
++ G +CG I++GGVG +V+ DM+ A + +++ LD
Sbjct: 217 TAVTESGLVCG-IQKGGVGSFKVNVLYDMVMQAQTIGLKVIHDLD 260
>gi|18977939|ref|NP_579296.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus furiosus DSM
3638]
gi|29336823|sp|Q8U0M0.1|ECX2_PYRFU RecName: Full=Probable exosome complex exonuclease 2
gi|18893709|gb|AAL81691.1| hypothetical protein PF1567 [Pyrococcus furiosus DSM 3638]
Length = 277
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KA LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGNTQVLVGIKATLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+ GK+ ++ID V+ DGNL+DA+G AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIAPGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V ++E EV+I +E+ +P+ T K+G + +VD TLEEE M ++
Sbjct: 169 V-----LYNEETGEVEILEEKE-PLPVEKIPISVTFAKIGNYLVVDPTLEEEQIMDGRLT 222
Query: 181 ISINRQGHICGMIKRGG 197
I+ + GHI + K G
Sbjct: 223 ITTDETGHISAVQKSEG 239
>gi|240104092|ref|YP_002960401.1| exosome complex RNA-binding protein Rrp42 [Thermococcus
gammatolerans EJ3]
gi|259645408|sp|C5A2B8.1|ECX2_THEGJ RecName: Full=Probable exosome complex exonuclease 2
gi|239911646|gb|ACS34537.1| 3'-5' exoribonuclease, exosome complex exonuclease 2, Rrp42p-like
protein (Rrp42p) [Thermococcus gammatolerans EJ3]
Length = 273
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 11/194 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K ++G P PD+G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGGTRVLVGIKVDVGEPFPDLPDRGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L LV+V GK+ ++ID V+ DGNL DA G A AAL T IP
Sbjct: 114 IRESQA-----VELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALMTTKIPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V ++E E+ I +E+ VP+ T K+G IVD L+EE+ M S ++
Sbjct: 169 VEY-----NEETGEI-IKLDEYEPLPVKHVPIPVTFAKIGSSIIVDPNLDEETVMDSRLT 222
Query: 181 ISINRQGHICGMIK 194
I+ + GHI + K
Sbjct: 223 ITTDETGHISAVQK 236
>gi|170577726|ref|XP_001894115.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158599437|gb|EDP37044.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 306
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 30/248 (12%)
Query: 1 MGSTDVIASVKAEL-GRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQH 59
+GSTD++ VKAEL +A+ + ++ FVDCS A P F GRGGEE + ELS+AL
Sbjct: 52 IGSTDLLIGVKAELISVDTAVY--RNRLNFFVDCSANATPLFAGRGGEEFADELSAALD- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
DL L++ W L++D +++ DGN++DA G +KAAL +T I
Sbjct: 109 ---AAYDNNYVLPDLKKLILSPMH-AWKLFVDIVLLQCDGNVIDAAGLGVKAALKDTEIS 164
Query: 120 SVHVAAEAASDEQPEVDISDEE-FLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V A + + +D+ D+ + DTS VP+ ++ ++G IVD +L EE+ ++
Sbjct: 165 KVIV--RPADEGKYTIDLPDDNTVWKLDTSRVPLFVSVNRLGTAKIVDNSLTEEACTRTS 222
Query: 179 VSI------------------SINRQGHICGMIKR-GGVGLDPSVILDMISVANFVSRQL 219
V I ++ R G I +++ GG L+ + +MIS+ QL
Sbjct: 223 VWIAVAPQFVSDINHNQNNQCAVKRDGSIITFMRQCGGGTLEIDSLEEMISIGLKAVHQL 282
Query: 220 MDKLDSEI 227
+ L+ +
Sbjct: 283 HEALNQRL 290
>gi|223477853|ref|YP_002582207.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
gi|214033079|gb|EEB73907.1| exosome complex exonuclease RRP43 [Thermococcus sp. AM4]
Length = 273
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 11/194 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K ++G P PD+G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGGTRVLVGIKVDVGEPFPDLPDRGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L LV+V GK+ ++ID V+ DGNL DA G A AAL T +P
Sbjct: 114 IRESQA-----VELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALLTTRVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V ++E E+ + +E+ +P+ T K+G IVD L+EE+ M S ++
Sbjct: 169 VEY-----NEETGEI-VKLDEYEPLPVRRIPLPVTFAKIGSSIIVDPNLDEETVMDSRIT 222
Query: 181 ISINRQGHICGMIK 194
I+ + GHI + K
Sbjct: 223 ITTDETGHISAVQK 236
>gi|409096212|ref|ZP_11216236.1| exosome complex RNA-binding protein Rrp42 [Thermococcus zilligii
AN1]
Length = 276
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 100/194 (51%), Gaps = 11/194 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P P++G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGDTMVLVGVKVEFGEPFPDLPERGVMTTNVELVPLASPTFEPGPPDERAVELARIVDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A IDL LV+V GK+ + L+ID V+ DGNL+DA G A AAL T IP
Sbjct: 114 I--RESNA---IDLDKLVIVPGKLVYVLFIDVHVLDHDGNLIDAAGLAAMAALMTTKIPR 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V AE I E + VPV T K+G +VD +LEEE+ M S ++
Sbjct: 169 VQYNAETGE------LIKLNELEPLPVNHVPVPVTFAKIGSSLVVDPSLEEETVMDSRLT 222
Query: 181 ISINRQGHICGMIK 194
I+ + GHI + K
Sbjct: 223 ITTDETGHISAVQK 236
>gi|389860736|ref|YP_006362976.1| ribosomal RNA-processing protein RRP42 [Thermogladius
cellulolyticus 1633]
gi|388525640|gb|AFK50838.1| ribosomal RNA-processing protein RRP42 [Thermogladius
cellulolyticus 1633]
Length = 282
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 15/222 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VKAELG P +P++G + + + P A P+FE E + E++ +
Sbjct: 58 LGGTQVIAGVKAELGTPFEDRPNEGVLQVHAEFVPLASPSFEPGPPNEEAIEVARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +DLS LV+ G++ W +Y D VI DGN+LD A AL+ + +P
Sbjct: 118 LREPKV-----VDLSKLVIQPGRLAWVIYDDVYVIDHDGNILDTGMIASMIALATSKLPR 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK--VGKHYIVDATLEEESQMSSA 178
+ AE V + + L +T ++TT+T +G +VD +LEEES + +
Sbjct: 173 LDTTAEGIK----VVYGTKDTPLPINT----LVTTVTMGVLGDILVVDPSLEEESVIDTF 224
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLM 220
+SIS++ +G I G+ KRG + P + + +A Q++
Sbjct: 225 LSISVDEKGRIVGLQKRGPRSITPKTLDSAVEIALKAGEQVL 266
>gi|315229928|ref|YP_004070364.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
gi|315182956|gb|ADT83141.1| exosome complex exonuclease 2 [Thermococcus barophilus MP]
Length = 270
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 11/223 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K +LG P PDKG + V+ P A PTFE +E + EL+ +
Sbjct: 51 LGNTQVLVGIKLDLGEPFPDLPDKGVMTTNVELVPLASPTFEPGPPDERAIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ IDL LV++ GK+ ++ID V+ DGNL+DA G AAL +T +P
Sbjct: 111 IRESQA-----IDLEKLVIIPGKLVRVVFIDVHVLDHDGNLVDATGIGAIAALLSTKMPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ ++E EV + D E+ + +P+ + K+G +VD LEEE M ++
Sbjct: 166 IE-----YNEETGEVMMLD-EYEPLPVTKIPIPVSFAKIGGTIVVDPNLEEEHVMDGKLT 219
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
I+ + G+I + K G ++ + VA ++++ +K+
Sbjct: 220 ITTDENGYISAVQKSEGGSFKLEEVMYAVDVAFKKAQEIREKI 262
>gi|375082087|ref|ZP_09729157.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
gi|374743300|gb|EHR79668.1| exosome complex RNA-binding protein Rrp42 [Thermococcus litoralis
DSM 5473]
Length = 269
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 100/197 (50%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K + G P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 51 LGNTQVLVGIKVDFGEPFPDLPEMGVMTTNVEFVPLASPTFEPGPPDERAIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DLS LV+V GK+ ++ID ++ DGNLLDA G AAL +T IP
Sbjct: 111 IRESQA-----VDLSKLVIVPGKLVRVIFIDVHILDHDGNLLDASGIGAIAALLSTKIPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V E+ EV + D E+ + VP+ + K+G IVD EEE M ++
Sbjct: 166 VEYDEESG-----EVKLLD-EYEPLPVTKVPIPVSFAKIGNALIVDPNFEEEQVMDGKLT 219
Query: 181 ISINRQGHICGMIKRGG 197
I+ + G+I + K G
Sbjct: 220 ITTDENGYISAVQKSEG 236
>gi|288560608|ref|YP_003424094.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
gi|288543318|gb|ADC47202.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
ruminantium M1]
Length = 263
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 107/225 (47%), Gaps = 13/225 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI VK +G P A P+ G + + P A P FE S EL+ +
Sbjct: 51 LGDTQVIVGVKPTIGEPFADTPNLGVLMTNCELLPMAAPGFEPGPPSPESIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL L + EGK W L+ID VI DGNL D A+ +AL NT +P
Sbjct: 111 IRESEL-----VDLEKLCIEEGKKVWMLFIDLHVIDYDGNLFDCANLAVMSALLNTKLP- 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
AE D EV +S++E + ++T K+G I+D +LEEE + + ++
Sbjct: 165 ---VAEYIDD---EVVLSEDETMDLPVRDKLALSTFVKIGNGLILDPSLEEEEILDARIT 218
Query: 181 ISINRQG-HICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
I + +G HIC M K G L ILD + +A L+ LD
Sbjct: 219 IGVTDEGNHICSMQKGGEEPLTRDDILDAVHLAFETKDDLLSYLD 263
>gi|390960832|ref|YP_006424666.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. CL1]
gi|390519140|gb|AFL94872.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. CL1]
Length = 269
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K ++G P PD+G + V+ P A P+FE +E + EL+ +
Sbjct: 51 LGNTQVLVGIKVDMGEPFPDLPDRGVITTNVELVPLASPSFEPGPPDENAIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ++L LV+V GK+ ++ID V+ DGNLLDA G AAL +T IP
Sbjct: 111 I--RESGA---VELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDATGIGAIAALLSTKIPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V ++E EV++ D E+ VP+ T K+G ++D L+EE M +
Sbjct: 166 V-----VYNEETDEVEVLD-EYEPLPVRRVPIPVTFAKIGPSLLIDPNLDEERVMDGRII 219
Query: 181 ISINRQGHICGMIKRGG 197
I+ + G I + K G
Sbjct: 220 ITTDENGMISSVQKSEG 236
>gi|14591332|ref|NP_143410.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus horikoshii
OT3]
gi|29336585|sp|O59224.1|ECX2_PYRHO RecName: Full=Probable exosome complex exonuclease 2
gi|3257977|dbj|BAA30660.1| 274aa long hypothetical autoantigen like protein [Pyrococcus
horikoshii OT3]
Length = 274
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 11/194 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+
Sbjct: 54 LGSTQVLVGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVTDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIASIAALLNAKVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V ++E EV+I +E+ +P+ T K+G +VD +LEEE M ++
Sbjct: 169 VE-----YNEETGEVEILEEKE-PLPVERIPIPVTFAKIGNILVVDPSLEEELVMDGRLT 222
Query: 181 ISINRQGHICGMIK 194
++ + GHI + K
Sbjct: 223 VTTDETGHISAVQK 236
>gi|288869793|ref|ZP_06409499.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
DSM 2374]
gi|288860271|gb|EFC92569.1| putative exosome complex exonuclease 2 [Methanobrevibacter smithii
DSM 2374]
Length = 265
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 12/223 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI +K ++G P PD G + + P A+PTFE E S EL+ +
Sbjct: 55 IGDTQVIVGIKPQIGAPFPDTPDLGVLMTNCEMLPMADPTFEPGPPSEDSIELARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL L V EGK W L+ID +I + GNL DA A+ AAL +T +PS
Sbjct: 115 IRESEL-----VDLDKLCVEEGKHVWMLFIDLHIIDNCGNLFDACELAVMAALKSTKLPS 169
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+A + EV + E + + + T K+G I+D TL EE S+ ++
Sbjct: 170 ASIADD-------EVVLDHENTIDLPINNEVAMCTFVKIGDKLILDPTLNEEKVASARLN 222
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ + + G+IC M K G + L I + A +++L++ L
Sbjct: 223 VGVTKDGNICAMQKGGILPLTKEDIFYCVDKAVSKTKELVEYL 265
>gi|222444528|ref|ZP_03607043.1| hypothetical protein METSMIALI_00140 [Methanobrevibacter smithii
DSM 2375]
gi|222434093|gb|EEE41258.1| 3' exoribonuclease family, domain 1 [Methanobrevibacter smithii DSM
2375]
Length = 265
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 13/198 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI +K ++G P PD G + + P A+PTFE E S EL+ +
Sbjct: 55 IGDTQVIVGIKPQIGAPFPDTPDLGVLMTNCEMLPMADPTFEPGPPSEDSIELARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL L V EGK W L+ID +I + GNL DA A+ AAL +T +PS
Sbjct: 115 IRESEL-----VDLDKLCVEEGKHVWMLFIDLHIIDNCGNLFDACELAVMAALKSTKLPS 169
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+A + EV + E + + + T K+G I+D TL EE S+ ++
Sbjct: 170 ASIADD-------EVVLDHENTIDLPINNEVAMCTFVKIGDKLILDPTLNEEKVASARLN 222
Query: 181 ISINRQGHICGMIKRGGV 198
+ + + G+IC M ++GG+
Sbjct: 223 VGVTKDGNICAM-QKGGI 239
>gi|148642301|ref|YP_001272814.1| exosome complex RNA-binding protein Rrp42 [Methanobrevibacter
smithii ATCC 35061]
gi|148551318|gb|ABQ86446.1| ribonuclease PH-related protein [Methanobrevibacter smithii ATCC
35061]
Length = 262
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 13/198 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI +K ++G P PD G + + P A+PTFE E S EL+ +
Sbjct: 52 IGDTQVIVGIKPQIGAPFPDTPDLGVLMTNCEMLPMADPTFEPGPPSEDSIELARVVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +DL L V EGK W L+ID +I + GNL DA A+ AAL +T +PS
Sbjct: 112 IRESEL-----VDLDKLCVEEGKHVWMLFIDLHIIDNCGNLFDACELAVMAALKSTKLPS 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+A + EV + E + + + T K+G I+D TL EE S+ ++
Sbjct: 167 ASIADD-------EVVLDHENTIDLPINNEVAMCTFVKIGDKLILDPTLNEEKVASARLN 219
Query: 181 ISINRQGHICGMIKRGGV 198
+ + + G+IC M ++GG+
Sbjct: 220 VGVTKDGNICAM-QKGGI 236
>gi|145352406|ref|XP_001420540.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580774|gb|ABO98833.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 191
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA--EAA 128
GIDL SL V G+ W L +D G++LDAL ++AAL++T IP V VA E
Sbjct: 8 GIDLKSLCVKPGRARWTLTVDCACACDRGSMLDALSVGVRAALADTKIPKVTVAGVGEDG 67
Query: 129 SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGH 188
+ + E+D E + D S V+ T TK+G+H +VDAT EE + + +S+ ++R+G
Sbjct: 68 AGGELEIDDDPEACSRVDVSRCGVVVTTTKIGRHGVVDATEEETACSEATMSVGVDREGT 127
Query: 189 ICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230
IC GG LD M +A V +L++ +D +A A
Sbjct: 128 ICAEFGAGGESLDRGTAQAMRKLACKVGVELIEHMDGYLARA 169
>gi|171685834|ref|XP_001907858.1| hypothetical protein [Podospora anserina S mat+]
gi|170942878|emb|CAP68531.1| unnamed protein product [Podospora anserina S mat+]
Length = 297
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 111/231 (48%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A AEL P A +P G I + SP P FE E +S L+
Sbjct: 51 LGKTRVLAKASAELTVPYADRPLDGIFNIATELSPMTSPAFEVNRPTETEVLISRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S DGNL+DA A+ AAL + P
Sbjct: 111 V--RRSGA---LDTESLCLVAGQKCWSIRVDVHVLSHDGNLIDAACFAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMSS 177
+ + P ++ E + P T + G+ ++DAT EE S
Sbjct: 166 TSMEGGVLTVYTP----AEREPVPLSWLHSPFCVTWSFFGEEGDVAVLDATWMEEQVRSG 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ +IS+N+ G IC + K GGV ++ +L +VA ++ + KLD +A
Sbjct: 222 SCTISLNKHGEICQIAKLGGVPVEAVSLLQCTNVALVKAKDMSSKLDRWLA 272
>gi|390344513|ref|XP_791327.3| PREDICTED: exosome complex component RRP42-like [Strongylocentrotus
purpuratus]
Length = 150
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G V+ VKAE+G P+ + P +G + FVD S A P F GRGG+EL+AE+S+
Sbjct: 7 VGYWTVLVGVKAEMGPPNPLNPSRGGIEFFVDFSANASPKFAGRGGDELAAEISN----- 61
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+LG +D SL V+ G+ W LY D +V+ GNLLDA+ A+KAAL NT
Sbjct: 62 MLGLVYKNKKMLDYKSLCVIAGQCVWTLYADIVVLECGGNLLDAIALAVKAALYNT 117
>gi|428164753|gb|EKX33768.1| hypothetical protein GUITHDRAFT_155941 [Guillardia theta CCMP2712]
Length = 267
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T IASV+AEL A + V + V CS P+ GR E++SA L++
Sbjct: 31 GGTKAIASVQAELSDTGA-EGSGASVEVSVTCSNM--PSSAGRQAEDMSAALTADANRIF 87
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
A L ++V + W L++D +++ DG LLD + A+ AALS+T +P++
Sbjct: 88 ------ARPIPTLIKSLMVSDRHAWKLFVDVMLVEYDGCLLDVVSIAVWAALSDTKLPTL 141
Query: 122 HVAAEAASDEQPEVDISDEEFLQ--FDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
A E+ + EE + D S VP ++T+VGKH+I DAT EE+ +
Sbjct: 142 STFTNADGSVGVELSLEMEEKNKKPLDLSSVPTYVSITQVGKHFIADATAIEEACAGCRI 201
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S +IN + +C + K G GL P+ I+ + A M LD ++
Sbjct: 202 SYAINARNEVCCIHKSEGRGLKPTQIVSTMGAATQFGSNRMKFLDKKL 249
>gi|212223176|ref|YP_002306412.1| exosome complex RNA-binding protein Rrp42 [Thermococcus onnurineus
NA1]
gi|226740342|sp|B6YSE7.1|ECX2_THEON RecName: Full=Probable exosome complex exonuclease 2
gi|212008133|gb|ACJ15515.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 272
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K ++G P P+KG + V+ P A P+FE +E + EL+ +
Sbjct: 54 LGNTQVLVGIKVDMGEPFPDLPEKGVITTNVELVPLASPSFEPGPPDERAIELARVVDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ++L LV+V GK+ ++ID V+ DGNLLDA G AAL + +P
Sbjct: 114 I--RESGA---VELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALMSAKMPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V +E EV I D E+ S +P+ T+ KVG + +VD L+EE M ++
Sbjct: 169 V-----VYDEESGEVQILD-EYEPLPVSKMPIPVTIAKVGGNLLVDPNLDEELVMDGRIT 222
Query: 181 ISINRQGHICGMIKRGG 197
I+ + G I + K G
Sbjct: 223 ITTDENGMISSVQKSEG 239
>gi|357149446|ref|XP_003575115.1| PREDICTED: exosome complex component RRP45-like isoform 2
[Brachypodium distachyon]
Length = 394
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 16/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P +G +AIF + SP A+P FE GR GE + EL +
Sbjct: 52 LGETRVMGYVTAQLVQPYKDRPSEGTLAIFTEFSPMADPAFEPGRPGE-AAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W L +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSLRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYI--VDATLEEESQ 174
V E +V + D E L +P+ T G I +D T +EE+
Sbjct: 166 ECTVGGEDGQ----QVTVHDPEVRDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAV 221
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
M ++ +IN G +C + K GG G+ SVI+ + +A+ + + K+ S++
Sbjct: 222 MGGRMTATINSNGDVCSIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKSKV 274
>gi|357149443|ref|XP_003575114.1| PREDICTED: exosome complex component RRP45-like isoform 1
[Brachypodium distachyon]
Length = 336
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 16/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P +G +AIF + SP A+P FE GR GE + EL +
Sbjct: 52 LGETRVMGYVTAQLVQPYKDRPSEGTLAIFTEFSPMADPAFEPGRPGE-AAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W L +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSLRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYI--VDATLEEESQ 174
V E +V + D E L +P+ T G I +D T +EE+
Sbjct: 166 ECTVGGEDGQ----QVTVHDPEVRDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAV 221
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
M ++ +IN G +C + K GG G+ SVI+ + +A+ + + K+ S++
Sbjct: 222 MGGRMTATINSNGDVCSIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKSKV 274
>gi|367050304|ref|XP_003655531.1| hypothetical protein THITE_2170949 [Thielavia terrestris NRRL 8126]
gi|347002795|gb|AEO69195.1| hypothetical protein THITE_2170949 [Thielavia terrestris NRRL 8126]
Length = 293
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 110/231 (47%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A AE+ P A +P G I + SP P FE E LS L+
Sbjct: 51 LGRTRVLAKATAEVTVPYADRPLDGIFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S DGNL+DA A+ AAL + P
Sbjct: 111 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVLSHDGNLIDASCLAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY---IVDATLEEESQMSS 177
+ A + P ++ E + P T + G ++DAT EE
Sbjct: 166 TSMDAGVLTVYTP----AEREPVPLSWLHSPFCVTWSFFGDEADIAVLDATWLEEQVRVG 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ +IS+N+ G IC + K GG +D +L SVA ++ D LD+++A
Sbjct: 222 SCTISLNKHGEICQIAKLGGTPVDAVALLQCTSVALTKVKEFSDLLDTKLA 272
>gi|326493068|dbj|BAJ84995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 337
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 16/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P++G +AIF + SP A+P FE GR GE + EL +
Sbjct: 52 LGETRVMGYVTAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGE-AAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ ++GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNEGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYI--VDATLEEESQ 174
V D+ +V + D E L +P+ T G I +D T +EE+
Sbjct: 166 ECTVGG----DDGQQVTVHDSEVRDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAV 221
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
M ++ +IN G +C + K GG G+ SVI+ + +A+ + K+ E+
Sbjct: 222 MGGRMTATINSNGDVCAIQKAGGEGVMSSVIMQCLRIASVKVADIPSKIKREV 274
>gi|305663899|ref|YP_003860187.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
gi|304378468|gb|ADM28307.1| 3' exoribonuclease [Ignisphaera aggregans DSM 17230]
Length = 286
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 106/200 (53%), Gaps = 12/200 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++A VK E+G+P P++G + + + P A PTFE +E + EL+ +
Sbjct: 57 LGNTQILAGVKLEVGQPFPDSPNEGILIVNAEYLPAASPTFEPGPPDENAIELARVIDRG 116
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K I L LV+V GK W +++D ++ DGNL+DA A AL+ T IP
Sbjct: 117 LREAKV-----IALDKLVIVPGKRVWIVWLDIYILDHDGNLIDASAMASMLALATTFIPY 171
Query: 121 VHVAAEAASDEQPEVDISDEEFLQ-FDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V ++ V I LQ + V T+ K+G ++D T EEE+ SS +
Sbjct: 172 YEVDPLTSN-----VKIDRTRKLQRLPLNRYVVSVTVNKIGDLLVIDPTGEEEAIASSKL 226
Query: 180 SISINRQGHICGMIKRGGVG 199
+ISI+ +G+I G I++ G+G
Sbjct: 227 AISISEEGNIVG-IQKMGIG 245
>gi|307594959|ref|YP_003901276.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
gi|307550160|gb|ADN50225.1| 3' exoribonuclease [Vulcanisaeta distributa DSM 14429]
Length = 283
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 9/197 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E+G+P PD+G + + ++ +PTA P E +E + E++ +
Sbjct: 58 LGNTKVMAGVKVEVGKPFEDTPDEGALIVNLEIAPTASPDIEPGPPDENAIEIARVVDRA 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ SG +D SL +V GK W L++D V++ DGNL+DA A AAL NT +P
Sbjct: 118 I--RHSGF---LDFKSLSIVTGKHAWFLWVDIYVLNHDGNLVDASTIAAVAALMNTALPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V + + ++D S L+ +T +P+ T K+G +VD T EEE +S V
Sbjct: 173 VEL---DPAGNILKIDRSARSPLRLNTDKLPLTITYVKIGNFLLVDPTREEE-DLSDGVY 228
Query: 181 ISINRQGHICGMIKRGG 197
I+ G++ + K G
Sbjct: 229 ITGIAGGNVVAIQKVTG 245
>gi|426236417|ref|XP_004012165.1| PREDICTED: exosome complex component RRP43 [Ovis aries]
Length = 276
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 114/230 (49%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE G P PDKG V VD SP F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSWRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + ++ DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTEEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|115446633|ref|NP_001047096.1| Os02g0550700 [Oryza sativa Japonica Group]
gi|50725756|dbj|BAD33267.1| putative polymyositis/scleroderma autoantigen 1 [Oryza sativa
Japonica Group]
gi|113536627|dbj|BAF09010.1| Os02g0550700 [Oryza sativa Japonica Group]
Length = 395
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 16/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ A+L +P +P++G +AIF + SP A+P FE GR GE + EL +
Sbjct: 53 LGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGES-AIELGRVVDR 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 112 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYI--VDATLEEESQ 174
V E +V + D E L +P+ T G+ I +D T +EE+
Sbjct: 167 ECTVGGEDGQ----QVTVHDPEVRDPLPLTIHHLPIAVTFAYFGEGNIMVIDPTYKEEAV 222
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
M ++ +IN G +C + K GG G+ SVI+ + +A+ + + K+ +E+
Sbjct: 223 MGGRMTATINSNGDVCSIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKNEV 275
>gi|326498189|dbj|BAJ94957.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 113/219 (51%), Gaps = 16/219 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P++G +AIF + SP A+P FE GR GE + EL +
Sbjct: 52 LGETRVMGYVTAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGEA-AIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ ++GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNEGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYI--VDATLEEESQ 174
V D+ +V + D E L +P+ T G I +D T +EE+
Sbjct: 166 ECTVGG----DDGQQVTVHDSEVRDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAV 221
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
M ++ +IN G +C + K GG G+ SVI+ + +A+
Sbjct: 222 MGGRMTATINSNGDVCAIQKAGGEGVMSSVIMQCLRIAS 260
>gi|341582107|ref|YP_004762599.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. 4557]
gi|340809765|gb|AEK72922.1| exosome complex RNA-binding protein Rrp42 [Thermococcus sp. 4557]
Length = 269
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK ++G P PD+G + V+ P A P+FE +E + EL+ +
Sbjct: 51 LGNTQVLVGVKVDMGEPFPDLPDRGVITTNVELVPLASPSFEPGPPDENAIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L LV+V GK+ ++ID V+ DGNLLDA G AAL +T +P
Sbjct: 111 IRESQA-----VELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALLSTRMPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V ++E EV++ D E+ +P+ T+ K+G + +VD L+EE M +
Sbjct: 166 V-----VYNEETDEVEVLD-EYEPLPVRRIPIPVTMAKIGPNILVDPNLDEERVMDGRII 219
Query: 181 ISINRQGHICGMIKRGG 197
I+ + I + K G
Sbjct: 220 ITTDENAMISSVQKSEG 236
>gi|410930716|ref|XP_003978744.1| PREDICTED: exosome complex component RRP45-like [Takifugu rubripes]
Length = 386
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P++G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGETRVMAQVSCELVAPKESRPNEGILFFNIELSPMASPAFEAGRQSELSVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGNL+DA A ALS+ P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHLLNHDGNLMDAASIAAITALSHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V E + PE + + + +P+ + + + G + +VD EE M
Sbjct: 165 VSSVGEEITVFSPE----ERDPIPLCIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LMIAMNKHREICSIQSSGGIML 242
>gi|12835620|dbj|BAB23303.1| unnamed protein product [Mus musculus]
Length = 160
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
Query: 85 CWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVA--AEAASDEQPEVDISDEEF 142
CW LY+D L++ GNL DA+ A+KAAL NT IP V V E A D +++SD+ +
Sbjct: 1 CWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGAKD----IELSDDPY 56
Query: 143 --LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGL 200
++ VP I TL K+G ++VDATL+EE+ +++ +S+ +G + M K G L
Sbjct: 57 DCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSL 116
Query: 201 DPSVILDMISVANFVSRQLMDKLDS 225
DP I +M+ + V + L L S
Sbjct: 117 DPESIFEMMESSKRVGKVLHVSLQS 141
>gi|389632461|ref|XP_003713883.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae 70-15]
gi|351646216|gb|EHA54076.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae 70-15]
Length = 293
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T ++A AE+ P +P G I + SP A P FE E LS L+
Sbjct: 51 FGKTRIVAKASAEVTIPYTDRPFDGIFNIVTELSPMASPAFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL +V G+ CW + +D S DGNL+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCLVAGQKCWSIRVDVHAESHDGNLIDASCLAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT---KVGKHYIVDATLEEESQMSS 177
+ E + P ++ E + P T + +G ++VDA EE S
Sbjct: 166 TSIEGEVVTVYTP----AEREPVPLSWLHSPFCVTFSFFGDLGDMFVVDANWLEEQVRVS 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ +IS+NR G IC + K GG ++ +L +VA ++ LD ++A
Sbjct: 222 SCTISLNRHGEICQIAKLGGTAVEAVTLLQCNAVALVKAKDFSKLLDDKLA 272
>gi|118601810|ref|NP_001073074.1| exosome complex component RRP43 [Bos taurus]
gi|122135904|sp|Q2KHU3.1|EXOS8_BOVIN RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Ribosomal
RNA-processing protein 43
gi|86826533|gb|AAI12882.1| Exosome component 8 [Bos taurus]
gi|296481825|tpg|DAA23940.1| TPA: exosome complex exonuclease RRP43 [Bos taurus]
Length = 276
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE G P PDKG V VD SP F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + ++ DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSCLNIRTH--PVATSFAVFDDTLLIVDPTEEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTVVMDEEGRLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|333986696|ref|YP_004519303.1| 3' exoribonuclease [Methanobacterium sp. SWAN-1]
gi|333824840|gb|AEG17502.1| 3' exoribonuclease [Methanobacterium sp. SWAN-1]
Length = 263
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 12/223 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ VK ++ P + P G + + P A P FE +E S ELS C
Sbjct: 52 IGNTQIMVGVKTQIAAPFSDTPQMGVLMTNSELLPMAAPNFEPGPPDENSVELSRVTDRC 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K +DL L ++EGK W +++D ++ +GNL+D AAL N IP+
Sbjct: 112 VREAKV-----VDLEKLCIIEGKKVWMIFVDLHILDYEGNLMDTAVLGTVAALMNAKIPT 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V E E+ + ++ + + ++ T K+ +VD + EEE M + +S
Sbjct: 167 ATV-------EDDEIVLDYDKMIPLPFNEKALMCTFAKIDDELVVDPSREEEEIMDARIS 219
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
I + G IC M K G IL +++A +++L + L
Sbjct: 220 IGMRADGTICAMQKGGAKPFKKDEILKAVTIAKEKTKELREYL 262
>gi|47213776|emb|CAF92665.1| unnamed protein product [Tetraodon nigroviridis]
Length = 379
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P++G + ++ SP A P FE ELS L+ L+ C
Sbjct: 50 LGETRVMAQVSCELVAPKESRPNEGILFFNIELSPLASPAFEAGRQSELSVNLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGNL+DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHMLNHDGNLMDAASIAAITALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V + E PE + + + +P+ + + + G + +VD EE M
Sbjct: 165 VGIVGEEIKVFSPE----ERDPIPLSIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LMIAMNKHREICSIQSSGGIML 242
>gi|340959729|gb|EGS20910.1| hypothetical protein CTHT_0027490 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 293
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 109/231 (47%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T V+A AE+ P A +P G I + SP PTFE E LS L+
Sbjct: 51 FGKTRVLAKASAEVTVPYADRPLDGIFTIATELSPMTSPTFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S DGNL+DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLVAGQKCWSIRVDVHVMSHDGNLVDAACIAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMSS 177
+ + + P ++ E + P T + G ++DAT EE
Sbjct: 166 TSIESGVLTIYTP----AEREPVPLSWLHTPFCVTWSFFGDEGEIAVLDATWLEEQVRVG 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ +IS+N+ G IC + K GG ++ +L S+A ++ D +D ++A
Sbjct: 222 SCTISMNKHGEICQIAKLGGTPVEAVSLLQCTSIALTKVKEFSDLVDKKLA 272
>gi|293335353|ref|NP_001170333.1| uncharacterized protein LOC100384304 [Zea mays]
gi|224030955|gb|ACN34553.1| unknown [Zea mays]
gi|224035157|gb|ACN36654.1| unknown [Zea mays]
gi|413937197|gb|AFW71748.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 393
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 16/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G +AIF + SP A+P+FE GR G EL+ EL +
Sbjct: 52 LGETHVMGYVTVQLVQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPG-ELAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYIV--DATLEEESQ 174
V D+ +V + D E L +P+ T G+ IV D T +EE+
Sbjct: 166 ECTVGG----DDGQQVTVHDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAV 221
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
M ++ +N G +C + K GG G+ SVI+ + +A+ + + K+ +
Sbjct: 222 MGGRMTAIVNSNGDVCAIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKKAV 274
>gi|296243059|ref|YP_003650546.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
11486]
gi|296095643|gb|ADG91594.1| ribosomal RNA-processing protein RRP42 [Thermosphaera aggregans DSM
11486]
Length = 289
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 20/217 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VI VK ELG P A +PD+G + + + P A TFE +E S E++ +
Sbjct: 58 LGTTQVITGVKIELGEPFADRPDEGVLQVHAEFVPLASQTFEPGPPDENSIEVARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ ID LVV GK W ++ D +I GN++DA + AL+ IP
Sbjct: 118 LREPKA-----IDFKQLVVAPGKKVWVVFNDIYLIDHGGNIMDASMLSSMLALATAKIPY 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKH---YIVDATLEEESQM 175
+++P V + D + TS +PV T + V G H IVD ++EEE +
Sbjct: 173 -------YEEKEPGVYVVDN---KRHTSPLPVNTLVATVTMGIHEDVIIVDPSIEEEVVL 222
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
++ ++I+++ +G +CG+ K+G GL ++ + +A
Sbjct: 223 NTFLTIAVDEKGRVCGIQKKGIAGLSKKMLDQAVEIA 259
>gi|328792578|ref|XP_395303.3| PREDICTED: exosome complex exonuclease RRP42-like, partial [Apis
mellifera]
Length = 156
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 83/138 (60%), Gaps = 4/138 (2%)
Query: 88 LYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF--LQF 145
+Y+D L++ GNL DA+G A+KAAL++T IP + A +P++++SD+ + +Q
Sbjct: 1 IYVDVLILQCGGNLFDAVGIAVKAALNSTEIPKITTATLDGG--EPDIELSDDPYDCIQL 58
Query: 146 DTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVI 205
DTS P+I TL K+G +YI+D TLEEE +S++ +S+ G + +IK G + PS
Sbjct: 59 DTSNYPIIVTLCKIGDNYIIDPTLEEEVCSASSIIMSVLPNGKVSSIIKLGYGSIQPSTF 118
Query: 206 LDMISVANFVSRQLMDKL 223
M+ + + L + L
Sbjct: 119 KKMLQMGENIGLNLNESL 136
>gi|122920909|pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 278
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 55 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 168
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 169 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 223
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++I ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 224 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 271
>gi|413937198|gb|AFW71749.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 337
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 16/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G +AIF + SP A+P+FE GR G EL+ EL +
Sbjct: 52 LGETHVMGYVTVQLVQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPG-ELAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYIV--DATLEEESQ 174
V D+ +V + D E L +P+ T G+ IV D T +EE+
Sbjct: 166 ECTVGG----DDGQQVTVHDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAV 221
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
M ++ +N G +C + K GG G+ SVI+ + +A+ + + K+ +
Sbjct: 222 MGGRMTAIVNSNGDVCAIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKKAV 274
>gi|31415882|ref|NP_852480.1| exosome complex component RRP43 [Homo sapiens]
gi|21759409|sp|Q96B26.1|EXOS8_HUMAN RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Opa-interacting
protein 2; Short=OIP-2; AltName: Full=Ribosomal
RNA-processing protein 43; AltName: Full=p9
gi|18088472|gb|AAH20773.1| Exosome component 8 [Homo sapiens]
gi|123992916|gb|ABM84060.1| exosome component 8 [synthetic construct]
gi|123999809|gb|ABM87413.1| exosome component 8 [synthetic construct]
gi|208966244|dbj|BAG73136.1| exosome component 8 [synthetic construct]
Length = 276
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++I ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|413937195|gb|AFW71746.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
gi|413937196|gb|AFW71747.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 446
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 16/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G +AIF + SP A+P+FE GR G EL+ EL +
Sbjct: 52 LGETHVMGYVTVQLVQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPG-ELAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYIV--DATLEEESQ 174
V D+ +V + D E L +P+ T G+ IV D T +EE+
Sbjct: 166 ECTVGG----DDGQQVTVHDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAV 221
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
M ++ +N G +C + K GG G+ SVI+ + +A+ + + K+ +
Sbjct: 222 MGGRMTAIVNSNGDVCAIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKKAV 274
>gi|413937194|gb|AFW71745.1| hypothetical protein ZEAMMB73_342555 [Zea mays]
Length = 363
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 16/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G +AIF + SP A+P+FE GR G EL+ EL +
Sbjct: 52 LGETHVMGYVTVQLVQPYRDRPNEGTLAIFTEFSPMADPSFEPGRPG-ELAIELGRVIDR 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 111 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYIV--DATLEEESQ 174
V D+ +V + D E L +P+ T G+ IV D T +EE+
Sbjct: 166 ECTVGG----DDGQQVTVHDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAV 221
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
M ++ +N G +C + K GG G+ SVI+ + +A+ + + K+ +
Sbjct: 222 MGGRMTAIVNSNGDVCAIQKAGGEGVMSSVIMQCLRIASVKAADITSKIKKAV 274
>gi|432896001|ref|XP_004076251.1| PREDICTED: exosome complex component RRP43-like [Oryzias latipes]
Length = 277
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 16/235 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+GST VI +KAEL P+ P KG + VD P F G GE+ A+ SS
Sbjct: 53 LGSTTVICGIKAELANPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEQ--AQASSQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I L + GK+CW LY D + + DGN+LDA A+ AAL NT +P
Sbjct: 109 --IADVIESSEIIKPEDLCIDRGKLCWVLYCDIMCLDYDGNILDACIIALLAALKNTRLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V V +PE+D+ + L PV T+ IVD T +EES +S
Sbjct: 167 KVTVNKATC---KPEIDLKERHELPVHKH--PVGTSFCIFQDSILIVDPTADEESLSTSR 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQ---LMDKLDSEIAAA 230
+S+ + + +C + K GG L + I+ A R+ L++K+ + + AA
Sbjct: 222 LSVVTDEEERLCSLHKPGGTSLSAEKLQTCINRATARQREIQKLIEKVLNSVKAA 276
>gi|443692453|gb|ELT94047.1| hypothetical protein CAPTEDRAFT_173435 [Capitella teleta]
Length = 277
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 11/235 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ +KAE+ + P++G V V P + P F R +L+ + ++
Sbjct: 53 LGNTCILCGIKAEMVASNPETPEQGIVDSSVSLLPMSTPQFRDRPPVDLAPSCTHFIEQL 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +DL L + +GK W+L+ D + + DGN+LDA A+ AAL NT +P
Sbjct: 113 L-----TCSGCLDLKDLCIEKGKHAWNLHCDLMCLDYDGNVLDACCLALIAALKNTVLPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG-KHYIVDATLEEESQMSSAV 179
V + E+ + V + +E + VPV TTL K VD T EEES + +
Sbjct: 168 VTIDEESGT-----VKLDAKEKHPLSVNAVPVSTTLAIFADKVLFVDPTQEEESLATGFI 222
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
++ HIC K GG + PS + D I + +++ + + +A+
Sbjct: 223 TVVTKDDDHICMTYKPGGSSVQPSQMQDCIKRSQHRRPEVLQLIRQALLTVEAER 277
>gi|159040755|ref|YP_001540007.1| exosome complex RNA-binding protein Rrp42 [Caldivirga
maquilingensis IC-167]
gi|157919590|gb|ABW01017.1| 3' exoribonuclease [Caldivirga maquilingensis IC-167]
Length = 279
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 10/172 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VIA +K ELG+P P++G + + ++ P A PTFE +E + E++ +
Sbjct: 56 LGNTKVIAGIKFELGKPFEDTPNEGNLIVNLETPPLAAPTFEPGPPDENAIEIARIIDRA 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L I L LV++ GK + +++D V++ DGNL+D+ A +A++N +P
Sbjct: 116 LRHSNY-----IPLRDLVIIPGKSVYSMWVDIYVLNHDGNLIDSSMLAAVSAIANAQVPR 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEE 172
+ E ++D S + L + +P+ T K+ K+ IVD TLEEE
Sbjct: 171 AIIDGENV-----KLDKSTKIPLNINPQNMPLTVTYYKIDKYLIVDPTLEEE 217
>gi|85087002|ref|XP_957805.1| hypothetical protein NCU00334 [Neurospora crassa OR74A]
gi|28918900|gb|EAA28569.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 297
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 110/231 (47%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A AE+ P A +P G I + SP A P FE E LS L+
Sbjct: 52 LGKTKILAKASAEVTVPFADRPLDGIFTIATELSPMAAPHFEVNRPTETEVLLSRLLEKT 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S DGNL DA A+ AAL + P
Sbjct: 112 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKPD 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMSS 177
+ + P ++ E + P T + G+ ++DA EE +
Sbjct: 167 TSMENGVLTVYTP----AEREPVPLGWLHSPFCVTWSFFGEEGETALLDADWMEEQVRVA 222
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+V+IS+NR G IC + K GGV ++ +L SVA ++ LD ++A
Sbjct: 223 SVTISLNRHGEICQIAKLGGVPVEAVALLQCTSVALTKVKEFSTYLDDKLA 273
>gi|320163129|gb|EFW40028.1| polymyositis/scleroderma autoantigen 1 [Capsaspora owczarzaki ATCC
30864]
Length = 313
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 17/243 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL +P +P +G V V+ SP A P FE E + ELS ++
Sbjct: 50 LGRTRVMVQVSCELTKPFPDRPAEGAVQFNVELSPMASPAFEPGRPSEQAIELSRMVERV 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + ID +SL V+ G+ W++ +D + DGNL DAL A A L + P
Sbjct: 110 VKDSNA-----IDTTSLCVISGEAVWNIRVDLHALDHDGNLSDALCMAALAGLIHFRKPE 164
Query: 121 VHVAAEAASDEQPE-----VDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEES 173
V + + ++ DE D+ + E L +P+ T + G+H +VD T +EE
Sbjct: 165 VSMPSLSSGDESVAGNLIIHDVREREPLPLSVHHMPLCVTFAFLDDGEHMVVDPTFQEER 224
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
+ +++N +C + K G V LD S I +A ++ + L I D
Sbjct: 225 VAEGYLIVAMNIHREVCAVHKHGSVLLDASQISRCTKIAAIKVAEMTELLQKSI-----D 279
Query: 234 EDE 236
E+E
Sbjct: 280 EEE 282
>gi|348583439|ref|XP_003477480.1| PREDICTED: exosome complex component RRP43-like [Cavia porcellus]
Length = 276
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P A PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAVPPADAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISSGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVRINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ +N +G +C + K GG GL + D + A V+R +LMD++
Sbjct: 222 LTVVMNEEGRLCCLHKPGGSGLTGPKLQDCMGRA--VTRHKEVKKLMDEV 269
>gi|347442048|emb|CCD34969.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Botryotinia fuckeliana]
Length = 294
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 13/216 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ ++ AE+ P + G I + SP A P FE E LS L+
Sbjct: 51 LGKTRVLVNITAEVTSPFPDRLFDGIFTITTELSPMASPAFETNRPTEQEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L A +D SL ++ G+ CW + D ++S DGNL+DA AI AAL + P
Sbjct: 111 L-----RRSAALDTESLCLIAGQKCWSVRADVHILSHDGNLIDASCIAIIAALQHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK----HYIVDATLEEESQMS 176
E + +++ E + P+ T + GK +VD TL EE
Sbjct: 166 TSTEGETVT----VYTLAEREPVPLSLLHFPLCVTFSFYGKGQEQTRLVDTTLTEEQLRE 221
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ +IS+NR G +C + K GG+ +D +L ++A
Sbjct: 222 GSCTISMNRHGEVCQIAKLGGIAVDAVELLQCTNIA 257
>gi|367027518|ref|XP_003663043.1| hypothetical protein MYCTH_2304429 [Myceliophthora thermophila ATCC
42464]
gi|347010312|gb|AEO57798.1| hypothetical protein MYCTH_2304429 [Myceliophthora thermophila ATCC
42464]
Length = 293
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 107/231 (46%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A AE+ P A +P G I + SP P FE E LS L+
Sbjct: 51 LGKTRVLAKATAEVTVPYADRPLDGIFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S DGNL DA A+ AAL + P
Sbjct: 111 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMSS 177
+ + P ++ E + P T + G ++DAT EE
Sbjct: 166 TSMEGGRLTVYTP----AEREPVPLSWLHSPFCVTWSFFGDEGEIAVLDATWLEEQVRVG 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ ++S+N+ G IC + K GG +D +L SVA ++ D LD ++A
Sbjct: 222 SCTVSLNKHGEICQIAKLGGTPVDAVALLQCTSVALTKVKEFSDLLDRKLA 272
>gi|149730159|ref|XP_001495596.1| PREDICTED: exosome complex component RRP43-like [Equus caballus]
Length = 276
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V ++ E A EV++ + FL T PV T+ IVD T EEE +
Sbjct: 167 EVTISEETA---LAEVNLKKKSFLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|2815604|gb|AAC39558.1| Opa-interacting protein OIP2 [Homo sapiens]
Length = 265
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 106/220 (48%), Gaps = 15/220 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 51 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 106
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 107 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 165 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 219
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQ 218
++I ++ +G +C + K GG GL + + D +S A V+R
Sbjct: 220 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRH 257
>gi|432843370|ref|XP_004065602.1| PREDICTED: exosome complex component RRP45-like [Oryzias latipes]
Length = 427
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P++G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGQTRVMAQVSCELVAPKESRPNEGIMFFNIELSPLASPAFEQGRQSELSVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D ++++DGNL+DA A AAL + P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHMLNNDGNLMDASSIAAIAALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + + G + +VD EE M
Sbjct: 165 VAVQGEEVTVYSPE----ERDPIPLSIYHMPISVSFSFFQQGTYLLVDPCEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LMIAMNKHREICSIQSSGGIML 242
>gi|336469878|gb|EGO58040.1| hypothetical protein NEUTE1DRAFT_82175 [Neurospora tetrasperma FGSC
2508]
gi|350290437|gb|EGZ71651.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 297
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 110/231 (47%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A AE+ P A +P G I + SP A P FE E LS L+
Sbjct: 52 LGKTKILAKASAEVTVPFADRPLDGIFTIATELSPMAAPHFEVNRPTETEVLLSRLLEKT 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S DGNL DA A+ AAL + P
Sbjct: 112 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKPD 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG---KHYIVDATLEEESQMSS 177
+ + P ++ E + P T + G + ++DA EE +
Sbjct: 167 TSMENGVLTVYTP----AEREPVPLGWLHSPFCVTWSFFGDEGETALLDADWMEEQVRVA 222
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+V+IS+NR G IC + K GGV ++ +L SVA ++ LD ++A
Sbjct: 223 SVTISLNRHGEICQIAKLGGVPVEAVALLQCTSVALTKVKEFSTYLDDKLA 273
>gi|348521108|ref|XP_003448068.1| PREDICTED: exosome complex component RRP45-like [Oreochromis
niloticus]
Length = 410
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P++G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGQTRVMAQVSCELVAPKENRPNEGIMFFNIELSPMASPGFEQGRQSELSVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++DGNL+DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHTLNNDGNLMDAASIAAITALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSTQGQEVTVYSPE----ERDPIPLSIYHMPISVSFAFFQQGTYLLVDPCEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICSIQSSGGIML 242
>gi|119719493|ref|YP_919988.1| exosome complex RNA-binding protein Rrp42 [Thermofilum pendens Hrk
5]
gi|119524613|gb|ABL77985.1| ribosomal RNA-processing protein RRP42 [Thermofilum pendens Hrk 5]
Length = 272
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 17/208 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+GST VIA VK +G P P++G + + SP A P FE G GEE EL+ +
Sbjct: 55 LGSTQVIAGVKLAIGTPFPDAPNEGVQIVNAELSPVASPFFEPGPPGEE-DIELARVVDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K +DL+ L ++ CW LYID + DGNL+DA G A AL +T +P
Sbjct: 114 GFRSAKV-----VDLAKLSIIPSAKCWTLYIDIYPLDHDGNLVDAAGLAALLALLDTKLP 168
Query: 120 SVHVAAEAASDEQPEVDISDEE-FLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V ++ ++ + DE+ L +T + V T+ K+G++ +VD TLEEE +
Sbjct: 169 RTSV-------QENKIAVLDEKDPLPINT--LVVYVTVAKIGEYLVVDPTLEEELTADAK 219
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVIL 206
++ I +G IC + K G P +L
Sbjct: 220 ITFGITERGEICAIQKSGEGSFRPDEVL 247
>gi|291408704|ref|XP_002720651.1| PREDICTED: exosome component 8 [Oryctolagus cuniculus]
Length = 276
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P A PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPADAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSRIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|395861770|ref|XP_003803149.1| PREDICTED: exosome complex component RRP43 [Otolemur garnettii]
Length = 280
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 109/231 (47%), Gaps = 13/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 57 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 112
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 113 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 170
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 171 EVIINEETA---LAEVNLKKKSYLNIRT--YPVATSFAVFDDTLLIVDPTGEEEHLATGT 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
++I ++ +G +C + K GG GL + + D +S A ++L +D I +
Sbjct: 226 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKELKKLMDEVIKS 276
>gi|296203741|ref|XP_002749024.1| PREDICTED: uncharacterized protein LOC100407072 [Callithrix
jacchus]
Length = 276
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 112/234 (47%), Gaps = 20/234 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINGETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKLDSEI 227
++I ++ +G +C + K GG GL + + D +S A V+R +LMD++ I
Sbjct: 222 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEVIKSI 273
>gi|355754637|gb|EHH58538.1| Exosome complex exonuclease RRP43, partial [Macaca fascicularis]
Length = 272
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 111/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 49 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 105 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 162
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 163 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 217
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++I ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 218 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 265
>gi|355700935|gb|EHH28956.1| Exosome complex exonuclease RRP43, partial [Macaca mulatta]
Length = 272
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 111/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 49 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRAGPPGEE--AQVASQF-- 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 105 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 162
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 163 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 217
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++I ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 218 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 265
>gi|147779414|emb|CAN74356.1| hypothetical protein VITISV_000912 [Vitis vinifera]
Length = 476
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 16/240 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G ++I+ + SP A+P+FE GR GE + EL +
Sbjct: 64 LGQTHVMGFVTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGE-AAVELGRVIDR 122
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL V+ GK+ W + ID +I + GNL+DA A AAL P
Sbjct: 123 GLRESRA-----VDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRP 177
Query: 120 SVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQ 174
E + PEV E L +P+ T +G I +D T EE+
Sbjct: 178 ECSFGGEDGQELIVHPPEV----REPLPLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAV 233
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
M ++ ++N G +C + K GG G+ SVI+ + +A+ + + K+ + + A + +
Sbjct: 234 MGGRMTATLNTNGDVCAIQKAGGEGIIQSVIMQCLRIASVKAADITSKIKNAVEAFNTER 293
>gi|386782149|ref|NP_001247467.1| exosome component 8 [Macaca mulatta]
gi|402901796|ref|XP_003913826.1| PREDICTED: exosome complex component RRP43 [Papio anubis]
gi|384945128|gb|AFI36169.1| exosome complex component RRP43 [Macaca mulatta]
Length = 276
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 111/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++I ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|114649397|ref|XP_522661.2| PREDICTED: exosome complex component RRP43 isoform 4 [Pan
troglodytes]
gi|397513274|ref|XP_003826944.1| PREDICTED: exosome complex component RRP43 [Pan paniscus]
Length = 276
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 111/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++I ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|354499904|ref|XP_003512044.1| PREDICTED: exosome complex component RRP43-like, partial
[Cricetulus griseus]
Length = 284
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 16/230 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PD+G V VD P F G GEE A+++S
Sbjct: 61 LGNTTVICGIKAEFAAPPLDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQFIA 118
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+L I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 119 DVLENSQI----IKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 174
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T+ PV T+ IVD T EEE +
Sbjct: 175 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSFAVFDDTLLIVDPTGEEEHLSTGT 229
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL-MDKLDSEI 227
++I ++ +G +C + K GG GL + + D +S A VSR ++KL E+
Sbjct: 230 LTIVMDEEGKLCSLHKPGGSGLTGAKLQDCMSRA--VSRHKEVNKLLDEV 277
>gi|330835837|ref|YP_004410565.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
Ar-4]
gi|329567976|gb|AEB96081.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera cuprina
Ar-4]
Length = 283
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 13/197 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P + P++G + + + P A TFE +E + ELS +
Sbjct: 58 LGDTTVLAGVKIEEDEPYSDTPNQGNLVVNAELLPLAYETFEPGPPDENAIELSRVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DLS+LV+ GK W +++D V+ GN+LDA + AAL +T +P
Sbjct: 118 LRDSKA-----VDLSALVIEPGKRVWTVWVDISVLDYGGNILDACTLSAVAALYDTKLPR 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
+ ++ ++I E+ PV T T+ K+GK +VD LEEE M + +
Sbjct: 173 I-------VNDNGTINIVKEDKTTPFPIRYPVATVTIAKLGKFLVVDPDLEEEGIMDAKI 225
Query: 180 SISINRQGHICGMIKRG 196
S S GHI G+ K G
Sbjct: 226 SFSYIPDGHIVGIQKSG 242
>gi|440896423|gb|ELR48345.1| Exosome complex exonuclease RRP43, partial [Bos grunniens mutus]
Length = 291
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 114/231 (49%), Gaps = 21/231 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE G P PDKG V VD SP F G GEE A+++S
Sbjct: 67 LGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEE--AQVASQF-- 122
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + ++ DGN+LDA A+ AAL N +P
Sbjct: 123 --IADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLP 180
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 181 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTEEEEHLATGT 235
Query: 179 VSISINRQGHICGMIKRG-GVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ +G +C + K G G GL + + D +S A V+R +LMD++
Sbjct: 236 LTVVMDEEGRLCCLHKPGSGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 284
>gi|225460698|ref|XP_002270464.1| PREDICTED: exosome complex component rrp45-like [Vitis vinifera]
Length = 467
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 16/240 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P +P++G ++I+ + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGE-AAVELGRVIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D+ SL V+ GK+ W + ID +I + GNL+DA A AAL P
Sbjct: 114 GLRESRA-----VDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRP 168
Query: 120 SVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQ 174
E + PEV E L +P+ T +G I +D T EE+
Sbjct: 169 ECSFGGEDGQELIVHPPEV----REPLPLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAV 224
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
M ++ ++N G +C + K GG G+ SVI+ + +A+ + + K+ + + A + +
Sbjct: 225 MGGRMTATLNTNGDVCAIQKAGGEGIIQSVIMQCLRIASVKAADITSKIKNAVEAFNTER 284
>gi|403286361|ref|XP_003934463.1| PREDICTED: exosome complex component RRP43 [Saimiri boliviensis
boliviensis]
Length = 276
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 112/234 (47%), Gaps = 20/234 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAVPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKLDSEI 227
++I ++ +G +C + K GG GL + + D +S A V+R +LMD++ I
Sbjct: 222 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEVIKSI 273
>gi|320101498|ref|YP_004177090.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
2162]
gi|319753850|gb|ADV65608.1| ribosomal RNA-processing protein RRP42 [Desulfurococcus mucosus DSM
2162]
Length = 286
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 21/228 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VK ELG P +P++G + + + P A P+FE +E S E++ +
Sbjct: 58 LGGTQVIAGVKLELGEPFPDRPNEGVLQVHAEFVPLASPSFEPGPPDENSIEIARIIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ + L +LVV GKV W ++ D ++ GN+ DA A AL+ IP
Sbjct: 118 LREPKA-----VKLDTLVVEPGKVVWVVFDDIYLVDHQGNITDASMMASMLALATARIPG 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-----GKHYIVDATLEEESQM 175
+ V E VD + + T +P+ T + V G +VD +LEEE+ +
Sbjct: 173 L-VKTETGY----RVDNTKQ------TGPLPINTLVVTVTMGIYGDTIVVDPSLEEEAVL 221
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
S ++I+++ G ICG+ KRG G + + + ++ A R L++ L
Sbjct: 222 DSFLTIAVDEAGRICGVQKRGMKGFSRNTLENAVNTALSKGRDLIELL 269
>gi|426375219|ref|XP_004054442.1| PREDICTED: exosome complex component RRP43 [Gorilla gorilla
gorilla]
Length = 276
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 111/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVIINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++I ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|337283875|ref|YP_004623349.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus yayanosii
CH1]
gi|334899809|gb|AEH24077.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus yayanosii
CH1]
Length = 268
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K +LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 51 LGNTQVLVGIKLDLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVVDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ +DL LV+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 111 IRESKA-----LDLEKLVIVPGKLVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNAKMPK 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V +E+ EV I D E+ +P+ T K+G +VD LEEE M ++
Sbjct: 166 VE-----YDEEKGEVTILD-EWEPLPVQKIPIPVTFAKIGGTLVVDPNLEEEQVMDGKLT 219
Query: 181 ISINRQGHICGMIKRGG 197
I+ + GHI + K G
Sbjct: 220 ITTDETGHISAVQKSEG 236
>gi|52550027|gb|AAU83876.1| 3'-5' exoribonuclease [uncultured archaeon GZfos34H10]
Length = 260
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 19/222 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P + P+KG + + P A P FE E S EL+ +
Sbjct: 53 IGDTVVLVGVKVEPGEPFSDTPNKGILMTNAELVPLASPEFESGPPNENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G ++ IDL L + EG+ W L+ID + +DGNL+DA +L N IP
Sbjct: 113 IRGSET-----IDLEKLCIEEGEKVWMLFIDIHTLDNDGNLVDAAALGAITSLLNVAIPY 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
++ E+ LQ + PV T+ ++G + +VD + EES +S ++
Sbjct: 168 EQYG------------LTGEDTLQIRDT--PVAVTVVEIGGNLLVDPNVYEESAATSKLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDK 222
+ N G I G+ K G GL I+ M + +R++ +K
Sbjct: 214 VISNADGSISGLQKSGSNGLTEEKIVKMAEIGIEKAREIREK 255
>gi|332242319|ref|XP_003270334.1| PREDICTED: exosome complex component RRP43 [Nomascus leucogenys]
Length = 276
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 111/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG + VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDKGYIVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|146302863|ref|YP_001190179.1| exosome complex RNA-binding protein Rrp42 [Metallosphaera sedula
DSM 5348]
gi|145701113|gb|ABP94255.1| ribosomal RNA-processing protein RRP42 [Metallosphaera sedula DSM
5348]
Length = 280
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P P++G + + + P A TFE +E + ELS +
Sbjct: 58 LGDTTVLAGVKVEEDEPYPDTPNQGNLVVNAELLPLAYETFEPGPPDENAIELSRVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DLS LV+ GK W +++D V+ GN+LDA A AAL + +P
Sbjct: 118 LRDSKA-----VDLSGLVIEPGKKVWTVWVDISVLDYGGNVLDACTIAAVAALYDAKLPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V E + I EE + PV+T ++ K+GK +VD LEEE M + +
Sbjct: 173 V-------VRENDNIIIQKEEKVTPLPIKYPVVTVSVAKIGKFLVVDPDLEEEGIMDAKI 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S G+I G+ K G + +A+ S++L+++L S I
Sbjct: 226 SFSYIPSGNIVGIQKSGEGSFSQQEVEVAEGMASATSQKLLEELKSLI 273
>gi|52549122|gb|AAU82971.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos24D9]
Length = 260
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 19/222 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P P+KG + + P A P FE E S EL+ +
Sbjct: 53 IGDTVVLVGVKVEPGAPFPDTPNKGILMTNAELVPLASPEFESGPPNEDSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G ++ IDL L + EG+ W ++ID + +DGNL+DA +L N IP
Sbjct: 113 IRGSET-----IDLEKLCIEEGEKVWMVFIDIHTLDNDGNLVDAAALGAITSLLNVTIPY 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
++ E+ LQ + PV T+ ++G + +VD + EES +S ++
Sbjct: 168 ERYG------------LTGEDTLQIRDT--PVAVTVVEIGGNLLVDPNVYEESAATSKLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDK 222
+ N G I G+ K G GL I+ MI + +R++ +K
Sbjct: 214 VISNADGSISGLQKSGSTGLTEEKIVKMIEIGIEKAREIREK 255
>gi|432328766|ref|YP_007246910.1| RNase PH-related exoribonuclease [Aciduliprofundum sp. MAR08-339]
gi|432135475|gb|AGB04744.1| RNase PH-related exoribonuclease [Aciduliprofundum sp. MAR08-339]
Length = 270
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 95/195 (48%), Gaps = 21/195 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ VK E G P P +G + + SP A PTFE G GEE + EL+ +
Sbjct: 58 LGRTKVLVGVKIEPGTPFPDTPAQGILTTNAELSPMASPTFEPGPPGEE-AIELARVVDR 116
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + IDL LV+ EG+ W ++ID V+ DGNL DA G AAL+ +P
Sbjct: 117 GIREGHA-----IDLEKLVIEEGEQVWVVFIDIHVLDYDGNLFDASGYGALAALTEATVP 171
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
AA E E+F + PV T K+G + D L+EES S+ +
Sbjct: 172 -------AAKHEL------GEDF-KLPVQHYPVPVTFAKIGNWLVADPNLDEESIASARL 217
Query: 180 SISINRQGHICGMIK 194
+++ N +G I M K
Sbjct: 218 TVTTNEEGKINAMQK 232
>gi|74146647|dbj|BAE41329.1| unnamed protein product [Mus musculus]
Length = 257
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 34 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 89
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 90 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 147
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T+ PV T+ IVD T EEE +
Sbjct: 148 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSFAVFDDTLLIVDPTGEEEHLSTGT 202
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++ + G +C + K GG GL + + D +S A +++ LD I
Sbjct: 203 LTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVI 251
>gi|357447261|ref|XP_003593906.1| Exosome complex exonuclease RRP45 [Medicago truncatula]
gi|355482954|gb|AES64157.1| Exosome complex exonuclease RRP45 [Medicago truncatula]
Length = 449
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 16/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V++ V A+L +P +P++G ++IF + SP A+P+FE GR GE + EL +
Sbjct: 55 LGETRVMSFVSAQLVQPYKDRPNEGTLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ ID SL ++ K+ W + ID ++ + GNL+DA A A+L P
Sbjct: 114 GLRESRA-----IDTESLCILSAKLVWAIRIDIHILDNAGNLVDAANIAALASLKTFRRP 168
Query: 120 SVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV--DATLEEESQ 174
+ E PEV E L +PV T +V D T EE+
Sbjct: 169 ECSLGGEDGQQVVVHPPEV----REPLPLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAV 224
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
M+ ++ ++N G +C + K GG G+ VI+ + +A+ + + K++ +
Sbjct: 225 MTGRMTATLNANGDVCAIQKPGGQGVFQRVIMHCLKLAHVKAGDITSKINDAV 277
>gi|449681001|ref|XP_002158932.2| PREDICTED: exosome complex component RRP43-like [Hydra
magnipapillata]
Length = 276
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 22/241 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ +KAEL PS + ++G VD CS P + +S ++
Sbjct: 53 IGNTIVVCGIKAELAEPSVEKTNEGYFVPNVDLPALCSHEFRPGPPSDQAQAMSQLVAET 112
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++C L I+L L + E K+CW +Y D + IS DGNL+DA+ A++ AL NT
Sbjct: 113 VENCKL---------INLKKLCIKEKKLCWVIYADIICISHDGNLIDAIIASLYIALLNT 163
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P V + E S PE +++ L+ T TT+ + +VD T EEE
Sbjct: 164 KLPVVTINEETGS---PEASPTEQFTLELTTRLSS--TTVELIDNKLLVDPTYEEEQLSL 218
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
S+++I + + +I M K GG ++ + I A + R ++LDS I A D
Sbjct: 219 SSLTIILGDEKNIISMYKPGGCSVNEDSVRTCIKYA--IHRA--EELDSLIHEASECIDR 274
Query: 237 S 237
S
Sbjct: 275 S 275
>gi|402086889|gb|EJT81787.1| exosome complex exonuclease RRP45 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 302
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 21/240 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A AE+ P A +P G I + SP A P FE E LS L+
Sbjct: 51 LGKTRILAKTSAEVTVPYADRPFDGIFNIVTELSPMASPAFEVNRPTEAEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G CW + +D V+S DGNL+DA A+ AL + P
Sbjct: 111 V--RRSGA---LDTESLCLIAGLKCWSVRVDLHVLSHDGNLVDASCLAVVTALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH------------YIVDAT 168
+ EA + P ++ E + P T + G+ + VDA
Sbjct: 166 TSIEGEALTVYTP----AEREPVPLSWLHSPFCVTFSFFGEASQSAGGDEAGDLFAVDAN 221
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
EE +IS+NR G IC + K GG +D +L ++A +++ +D +A
Sbjct: 222 WLEEQVRVGHCTISLNRHGEICQISKLGGAAVDAVALLQCNAIALTKAKEFSKLVDDRLA 281
>gi|328773489|gb|EGF83526.1| hypothetical protein BATDEDRAFT_9008 [Batrachochytrium
dendrobatidis JAM81]
Length = 285
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 14/229 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI ++KAEL P+ P +G + VD F EL+ +S+ L +
Sbjct: 69 VGDTSVICAIKAELAEPAPTLPYQGYLVPNVDLPALCASHFRPGPPCELAQSISTFLNNI 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +G +DL SL VV GKV W LY D + ++ GN+ DA A+ AAL N +P
Sbjct: 129 I-----SSGNVLDLESLCVVPGKVVWVLYADIVCLNYAGNIFDASVDALIAALCNVKLPE 183
Query: 121 VHVAAEAAS--DEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V ++ E+A + P + L T + G+ + D T EEE +SS
Sbjct: 184 VTISDESAPVINNLPAKPLKLNRILISSTFAI-------FDGQTLLADPTHEEEPLVSST 236
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
V+I ++ + IC + K GGV + +VI + +++A + M + + +
Sbjct: 237 VTIVVDDKDCICAIHKPGGVSITKAVIDECLTLAKSRTPSFMKLISNTV 285
>gi|148703331|gb|EDL35278.1| exosome component 8, isoform CRA_f [Mus musculus]
Length = 283
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 60 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 115
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 116 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 173
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T+ PV T+ IVD T EEE +
Sbjct: 174 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSFAVFDDTLLIVDPTGEEEHLSTGT 228
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++ + G +C + K GG GL + + D +S A +++ LD I
Sbjct: 229 LTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVI 277
>gi|298711453|emb|CBJ32592.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 239
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 9/160 (5%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
TDV+A+VK E+G P P G+V + V CS + P F+ R +++A LS AL+ +
Sbjct: 63 TDVLAAVKVEVGEPGLEAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM-- 120
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH- 122
G G G+DL +L +V+GK CW +++D LV+ +DGNLLDA A AL+ IP V
Sbjct: 121 --QGVG-GLDLDALGIVDGKFCWVVFVDILVLQADGNLLDASSFAAYTALNTARIPKVTP 177
Query: 123 VAAEAASDEQPEV--DISDEEFLQFDTSGVPVITTLTKVG 160
+ E + E+ +I D ++ T+ VPV T+++ G
Sbjct: 178 LVGEGGIYDDFEISSEIDDAVAIKGATN-VPVCLTMSRNG 216
>gi|254692991|ref|NP_081424.3| exosome complex component RRP43 isoform 2 [Mus musculus]
gi|21759414|sp|Q9D753.1|EXOS8_MOUSE RecName: Full=Exosome complex component RRP43; AltName:
Full=Exosome component 8; AltName: Full=Ribosomal
RNA-processing protein 43
gi|22208743|emb|CAD43467.1| CBP-interacting protein 3 [Mus musculus]
gi|148703329|gb|EDL35276.1| exosome component 8, isoform CRA_d [Mus musculus]
Length = 276
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T+ PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSFAVFDDTLLIVDPTGEEEHLSTGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++ + G +C + K GG GL + + D +S A +++ LD I
Sbjct: 222 LTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVI 270
>gi|45595709|gb|AAH67250.1| Exosc8 protein, partial [Mus musculus]
Length = 270
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 47 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 102
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 103 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 160
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T+ PV T+ IVD T EEE +
Sbjct: 161 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSFAVFDDTLLIVDPTGEEEHLSTGT 215
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++ + G +C + K GG GL + + D +S A +++ LD I
Sbjct: 216 LTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVI 264
>gi|336258954|ref|XP_003344283.1| hypothetical protein SMAC_06484 [Sordaria macrospora k-hell]
gi|380091844|emb|CCC10573.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 297
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A AE+ P A +P G I + SP A P FE E LS L+
Sbjct: 52 LGKTKILAKASAEVTVPFADRPLDGIFTIATELSPMAAPHFEVNRPTETEVLLSRLLEKT 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S DGNL DA A+ AAL + P
Sbjct: 112 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVLSHDGNLTDAACFAVVAALRHFRKPD 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV---GKHYIVDATLEEESQMSS 177
+ + P ++ E + P T + G+ ++DA EE +
Sbjct: 167 TSMENGVLTVYTP----AEREPVPLGWLHSPFCVTWSFFGDEGETALLDADWMEEQVRVA 222
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+++IS+NR G IC + K GGV ++ +L SVA + LD ++A
Sbjct: 223 SLTISLNRHGEICQIAKLGGVPVEAVALLQCTSVALTKVKDFSTFLDGKLA 273
>gi|60359866|dbj|BAD90152.1| mKIAA4013 protein [Mus musculus]
Length = 308
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 85 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 140
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 141 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 198
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T+ PV T+ IVD T EEE +
Sbjct: 199 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSFAVFDDTLLIVDPTGEEEHLSTGT 253
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++ + G +C + K GG GL + + D +S A +++ LD I
Sbjct: 254 LTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVI 302
>gi|297693867|ref|XP_002824217.1| PREDICTED: exosome complex component RRP43 [Pongo abelii]
Length = 276
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPTDAPDTGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNVRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++I ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|119628986|gb|EAX08581.1| exosome component 8, isoform CRA_c [Homo sapiens]
Length = 275
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 112/230 (48%), Gaps = 21/230 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++I ++ +G +C + + G+GL + + D +S A V+R +LMD++
Sbjct: 222 LTIVMDEEGKLC-CLHKPGIGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 268
>gi|291226456|ref|XP_002733208.1| PREDICTED: exosome component 8-like [Saccoglossus kowalevskii]
Length = 275
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 11/210 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VI +KAEL P+ +P KG V VD P P F E + +S +
Sbjct: 53 LGNTTVICGIKAELCTPTNDEPKKGFVVPNVDLPPLCSPRFRPGPPSEQAQVVSQFIADV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ++ L + EGK+ W LY D + + DGN++DA ++ AAL N +PS
Sbjct: 113 LKDSKM-----VNHEDLCIAEGKIVWVLYCDMMCLDYDGNVIDACIISLLAALRNVALPS 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQMSSAV 179
+ V E A + ++ +PV T+ ++ D T EEE+ + V
Sbjct: 168 IEVDEETAKPK-----LTSSTSSTMTVQSLPVSTSFAIFDNSILIADPTNEEENLATGVV 222
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMI 209
++ N G +C + K GG L S I + +
Sbjct: 223 TVVTNECGELCALHKPGGSSLSESQIQECV 252
>gi|282165296|ref|YP_003357681.1| probable exosome complex exonuclease 2 [Methanocella paludicola
SANAE]
gi|282157610|dbj|BAI62698.1| probable exosome complex exonuclease 2 [Methanocella paludicola
SANAE]
Length = 259
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 109/224 (48%), Gaps = 19/224 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G + V+ VK + G P PDKG + ++ P A PTFE E + EL+ +
Sbjct: 53 IGDSRVVVGVKIQPGEPFMDTPDKGVIITNLELVPLASPTFETGPPREDAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ IDLS L + G+ W ++ID V+ DGNL+DA AAL + IP+
Sbjct: 113 VRESEA-----IDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASMGAIAALMSAKIPN 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
A+ E ++ + D VPV T K+G I+D +L+EE+ S ++
Sbjct: 168 ----AKFGLGEDAKLPLED----------VPVGVTAVKIGSSIILDPSLDEENVASCKLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
+ N++G + GM K G L P + ++ +A + L KL+
Sbjct: 214 VITNKEGALAGMQKSGVGTLTPDEVKYIVHIAKEKANVLRQKLE 257
>gi|294495472|ref|YP_003541965.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
5219]
gi|292666471|gb|ADE36320.1| ribosomal RNA-processing protein RRP42 [Methanohalophilus mahii DSM
5219]
Length = 261
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 19/212 (8%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T V+ VK ++G P P +G + ++ +P A P FE E + E+ + +
Sbjct: 55 GDTQVMVGVKMQVGTPFPDSPAEGVIITSMELNPIASPDFEAGPPREKAIEMGRIVDRGI 114
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
+SGA ID++ L + EG+ W ++ID V+++ GN+LDA AAL T +PS
Sbjct: 115 R--ESGA---IDINKLCITEGEEVWMVFIDVHVLNNSGNILDAASLGAIAALMTTTVPSE 169
Query: 122 HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSI 181
E ++ P +PV +L K+G ++D T EES + ++I
Sbjct: 170 R---EGKGEDYP-----------MPVREMPVGVSLVKIGDEMVLDPTYGEESVCETRITI 215
Query: 182 SINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
S N+ G IC M K G L P+ ++ +A
Sbjct: 216 SSNQDGSICSMQKSGSGSLSPAQVVKASKIAK 247
>gi|358396358|gb|EHK45739.1| hypothetical protein TRIATDRAFT_140053 [Trichoderma atroviride IMI
206040]
Length = 293
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V AE+ P + +P G I + P P+FE E L+ L+
Sbjct: 51 LGKTRVLAKVSAEVTVPFSDRPFDGIFQITSELGPMVAPSFEVNRPTETEVLLARLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G+ CW + +D ++S+DGNL+D+ A+ AAL + P
Sbjct: 111 V--RRSGA---LDTESLCLIAGQKCWSVRVDLHILSADGNLIDSSCLAVVAALRHFRRPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMSS 177
+ E + ++ E + P TT G+ +VD T EE
Sbjct: 166 TSIEGETLTI----YTAAEREPVPLSWLHSPFCTTFDFFGEDGEIVLVDTTWLEEQLRVG 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+V+ S+N+ G IC + K GG ++ ++I+ A S++ D +D+ +A
Sbjct: 222 SVTFSLNKHGEICQISKLGGKPVEATLIIQCAQTALAKSKEFTDLVDARLA 272
>gi|149064770|gb|EDM14921.1| exosome component 8 (predicted), isoform CRA_a [Rattus norvegicus]
Length = 276
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 108/229 (47%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L + PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNVRAN--PVATSFAVFDDTLLIVDPTGEEEHLSTGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++ ++ +G +C + K GG GL + + D +S A +++ LD I
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVI 270
>gi|346319692|gb|EGX89293.1| 3' exoribonuclease [Cordyceps militaris CM01]
Length = 297
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 16/235 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V AE+ P + +P G I + SP P+FE E LS L+
Sbjct: 51 VGKTKVLAKVSAEVTVPFSDRPFDGVFTIASELSPMVAPSFEVNRPTETEVVLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V + CW + D V++ DGNLLDA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLVAAQKCWSIRADLHVLAHDGNLLDASCLAVIAALRHFRKPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-------YIVDATLEEES 173
+ + P ++ E + P T + G+ ++D T EE
Sbjct: 166 TTMEGGVLTVYTP----AEREPVPLSWLHSPFCVTFSFFGEEGDGDDTTVLLDTTWLEEQ 221
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+S+ + S+N+ G IC + K GG +D + + A S++ D LD ++A
Sbjct: 222 LRTSSCTFSMNKHGEICQVSKLGGAAVDAPLFVKCAQTALNKSKEFTDLLDRKLA 276
>gi|73993245|ref|XP_534492.2| PREDICTED: exosome complex component RRP43 isoform 1 [Canis lupus
familiaris]
Length = 276
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETG---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|302757249|ref|XP_002962048.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
gi|302775248|ref|XP_002971041.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
gi|300161023|gb|EFJ27639.1| hypothetical protein SELMODRAFT_94605 [Selaginella moellendorffii]
gi|300170707|gb|EFJ37308.1| hypothetical protein SELMODRAFT_77552 [Selaginella moellendorffii]
Length = 377
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 16/216 (7%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
G T V+A V A+LG P +P++G + I + SP A+P+FE GR G EL+ EL +
Sbjct: 52 GETRVLAVVSAQLGTPYPDRPNEGSLVINTEFSPMADPSFEPGRPG-ELAVELGRVIDRG 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ +D SL V+ GK W L ID ++ + GNL+D A A L + P
Sbjct: 111 LRESRA-----VDTESLCVLAGKAVWFLRIDIHILDNGGNLIDVANLAALAGLLSFRRPE 165
Query: 121 VHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQM 175
+ D PEV E L +P+ T + G+ ++D +L+EE+ M
Sbjct: 166 CSIGGADGQDITIHPPEV----REPLPLTLHHLPIAVTFGFLADGELVVLDPSLKEEAVM 221
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISV 211
+++++N G +C + K GGV + + IL + +
Sbjct: 222 GGRLTVTVNAHGEVCAIQKGGGVAVRMNEILRCMRI 257
>gi|168031159|ref|XP_001768089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680727|gb|EDQ67161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 276
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 14/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E+ +P + ++G +AIF + SP +P FE E++ EL +
Sbjct: 52 LGQTRVLAVVKGEITQPYPDRGNEGSLAIFTEFSPMGDPAFEPGRPSEMAVELGRIIDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ +D SL ++ G+ W + +D ++ + GNL+DA A AAL + P
Sbjct: 112 LRESRA-----VDTESLCILSGRSVWSIRVDIHILDNYGNLVDAANLAALAALLSYRRPE 166
Query: 121 VHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVG--KHYIVDATLEEESQM 175
V + PEV E + +P+ T G ++D L+EE M
Sbjct: 167 CTVGGDDGQQIIVHPPEV----REPVGLIIHHLPIAVTFAFFGDGNFQVLDPNLKEEEVM 222
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
++I+IN QG IC + K GGVG+ S ++ + +A ++ + + L ++
Sbjct: 223 GGRITITINSQGEICAVQKGGGVGVSASEVMRCLRIAAAKAQSMTETLKKAVS 275
>gi|119628984|gb|EAX08579.1| exosome component 8, isoform CRA_a [Homo sapiens]
Length = 316
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 112/230 (48%), Gaps = 21/230 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 94 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 149
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 150 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 207
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 208 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 262
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++I ++ +G +C + + G+GL + + D +S A V+R +LMD++
Sbjct: 263 LTIVMDEEGKLC-CLHKPGIGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 309
>gi|48477465|ref|YP_023171.1| exosome complex RNA-binding protein Rrp42 [Picrophilus torridus DSM
9790]
gi|48430113|gb|AAT42978.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 260
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 23/200 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A VK E G P PD+G +A+ ++ P A PTFE G GEE + E S +
Sbjct: 56 LGRTKVVAGVKIEEGEPFPDTPDQGVMALNIEMLPMAFPTFEAGPPGEE-AIEYSRVVDR 114
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ K ID++ LV+ G W ++ID +I+ GN++DA A AAL N +P
Sbjct: 115 GIRESKM-----IDVTRLVIEPGTKVWMVFIDIDIINYAGNIIDASTIAAVAALRNAIVP 169
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
+ + E + + PV T+ K+G ++D LEEE + +
Sbjct: 170 ASRIGGED---------------FKLPVNANPVSVTMAKIGDELVIDPDLEEEQVSNGRI 214
Query: 180 SISINRQGHICGMIKRGGVG 199
+I++ HI I++G VG
Sbjct: 215 TITMAEDDHIHA-IQKGDVG 233
>gi|196005309|ref|XP_002112521.1| hypothetical protein TRIADDRAFT_25085 [Trichoplax adhaerens]
gi|190584562|gb|EDV24631.1| hypothetical protein TRIADDRAFT_25085, partial [Trichoplax
adhaerens]
Length = 266
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 19/228 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G+T ++ +K E P PD G + VD P F G GE+ S L+
Sbjct: 49 IGNTTMLCGIKTEFAVPKLDSPDHGYIVPNVDLPPLCSYRFRPGPPGEQAQVCSQYLADI 108
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ C L I+L L +V+ K+ W +YID L + DGN+LDA A+ AAL +
Sbjct: 109 IKSCNL---------INLKDLCIVKEKLAWVIYIDLLCLDCDGNVLDASVIAMLAALRSA 159
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQM 175
P V + E ++P V S +E + + P+ +T K+ I+ D T EEE+
Sbjct: 160 KFPKVEIDEEV---DKPIV--SKDESFSLNVNDCPISSTFVLFDKNLILADPTSEEENLS 214
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
S ++I++N + ++K GG G++ + + + I++A +R + D L
Sbjct: 215 SGYLTITVNNDDGLSNVLKPGGRGVNDAELNECITLAIKRARDMRDLL 262
>gi|147919674|ref|YP_686582.1| exosome complex RNA-binding protein Rrp42 [Methanocella arvoryzae
MRE50]
gi|121687882|sp|Q0W2Y7.1|ECX2_UNCMA RecName: Full=Probable exosome complex exonuclease 2
gi|110621978|emb|CAJ37256.1| putative exosome complex exonuclease 2 [Methanocella arvoryzae
MRE50]
Length = 260
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 19/224 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G + V+ VK + G P PD G + ++ P A PTFE E + EL+ +
Sbjct: 53 IGDSQVVVGVKIQPGEPFPDTPDSGVIITNLELVPLASPTFESGPPREDAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA IDLS L + G+ W ++ID V+ DGNL+DA AAL T IP+
Sbjct: 113 VR--ESGA---IDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPN 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
E ++ + VP+ T +G ++D +L+EES ++
Sbjct: 168 SKFGL--------------GEDVKLPLNDVPIGVTAVNIGGAIMLDPSLDEESVAPCKLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
+ N++G I GM K G L P I +I +A + L +KL+
Sbjct: 214 VITNKEGAISGMQKSGVGTLTPDQINHIIRLAKEKANVLREKLE 257
>gi|301791884|ref|XP_002930910.1| PREDICTED: exosome complex exonuclease RRP43-like [Ailuropoda
melanoleuca]
Length = 276
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPTDTPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E EV + + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETG---LAEVHLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|14520827|ref|NP_126302.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi GE5]
gi|29337009|sp|Q9V118.1|ECX2_PYRAB RecName: Full=Probable exosome complex exonuclease 2
gi|5458043|emb|CAB49533.1| RNAse PH-related exoribonuclease [Pyrococcus abyssi GE5]
gi|380741369|tpe|CCE70003.1| TPA: exosome complex RNA-binding protein Rrp42 [Pyrococcus abyssi
GE5]
Length = 274
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 13/198 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 114 IRESKA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDE-EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V E EV+ DE E L + VPV T K+G +VD +L+EE M +
Sbjct: 169 VRYNEETG-----EVETLDETEPLPVEKIPVPV--TFAKIGNILVVDPSLDEELVMDGKI 221
Query: 180 SISINRQGHICGMIKRGG 197
+I+ + GHI + K G
Sbjct: 222 TITTDETGHISAVQKSEG 239
>gi|318083345|ref|NP_001187695.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
gi|308323723|gb|ADO28997.1| exosome complex exonuclease rrp43 [Ictalurus punctatus]
Length = 277
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 13/226 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+ VI +KAEL P+A PDKG + VD P F G GE+ A+++S
Sbjct: 53 IGNATVICGIKAELATPTADAPDKGYIVPNVDLPPLCSSRFRPGPPGEQ--AQVASQFIA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ + I L + + K+CW LY D + + DGNL DA + AAL N +P
Sbjct: 111 DIIDDSNI----IKKEDLCIGKSKLCWVLYCDIMCLDYDGNLPDACIITLLAALKNAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY-IVDATLEEESQMSSA 178
V + E + PEVD+ + LQ + PV ++ IVD T EEES ++
Sbjct: 167 KVTINKET---DLPEVDVQHKRHLQINKH--PVASSFAVFDDEVIIVDPTTEEESLATAL 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
++ + +C K GG L + IS A +R++ +D
Sbjct: 222 ITAVTDENDQLCAFHKPGGSSLSAEKLQGCISRAVTRNREINKLID 267
>gi|37589850|gb|AAH59089.1| Exosome component 8 [Mus musculus]
Length = 276
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T+ PV + IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNVRTN--PVAASFAVFDDTLLIVDPTGEEEHLSTGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++ + G +C + K GG GL + + D +S A +++ LD I
Sbjct: 222 LTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVI 270
>gi|356497351|ref|XP_003517524.1| PREDICTED: exosome complex component rrp45-like [Glycine max]
Length = 350
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 14/228 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI V A+L RP +P++G ++IF + SP A+P+FE + + EL +
Sbjct: 55 LGQTHVITFVTAQLVRPYRDRPNEGSLSIFTEFSPMADPSFEPGRPTDAAVELGRVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ ID SL V+ GK+ W + +D ++ + GNL+DA A +L P
Sbjct: 115 LRESRA-----IDTESLCVLSGKLVWAIRVDIHILDNAGNLVDAANIAALVSLLTFRRPE 169
Query: 121 VHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--YIVDATLEEESQM 175
+ E D PE + + + +P+ T ++D T EE M
Sbjct: 170 CSLTGEDGQDVVVHPPE----ERDPIPLIIHHLPIAVTFGFFSNENLLVIDPTHHEECVM 225
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ ++ ++N G +C + K GG + SVI+ + +A+ + + K+
Sbjct: 226 TGRMTATLNSNGDVCAIQKPGGESVSQSVIMHCLKLAHVKATDITTKI 273
>gi|356539154|ref|XP_003538065.1| PREDICTED: exosome complex component rrp45-like [Glycine max]
Length = 438
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 14/228 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V A+L RP +P++G ++IF + SP A+P+F+ + + EL +
Sbjct: 55 LGQTHVMTFVTAQLVRPYRDRPNEGSLSIFTEFSPMADPSFDPGRPSDAAVELGRVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ ID SL V+ GK+ W + +D ++ + GNL+DA A A+L P
Sbjct: 115 LRESRA-----IDTESLCVLSGKLVWAIRVDIHILDNAGNLVDAANIAALASLLTFRRPE 169
Query: 121 VHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--YIVDATLEEESQM 175
+A E D PE + + + +P+ T ++D T EE M
Sbjct: 170 CSLAGEDGQDVVVHPPE----ERDPIPLIIHHLPIAVTFGFFSNENLLVIDPTHHEECVM 225
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ ++ ++N G +C + K GG + SVI+ + +A+ + + K+
Sbjct: 226 TGRMTATLNSNGDVCAIQKPGGESVSHSVIMHCLKLAHVKATDITTKI 273
>gi|299689088|pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689091|pdb|3L7Z|D Chain D, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689094|pdb|3L7Z|G Chain G, Crystal Structure Of The S. Solfataricus Archaeal Exosome
Length = 271
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 17/197 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYTTFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V ++ ++ E + PV+T ++ KV K+ +VD L+EES M + +
Sbjct: 173 VE-----------QISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKI 221
Query: 180 SISINRQGHICGMIKRG 196
S S I G+ K G
Sbjct: 222 SFSYTPDLKIVGIQKSG 238
>gi|255580609|ref|XP_002531128.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
gi|223529292|gb|EEF31262.1| exosome complex exonuclease rrp45, putative [Ricinus communis]
Length = 463
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 16/240 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V ++L +P +P++G ++IF + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTSQLVQPYRDRPNEGSLSIFSEFSPMADPSFEPGRPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 114 GLRESRA-----VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRP 168
Query: 120 SVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY--IVDATLEEESQ 174
+ E PEV +E L +P+ T + +VD T EE+
Sbjct: 169 ECTLGGEDGQQVIVHPPEV----KEPLPLIVHHLPIAVTFAFFSSEHTMVVDPTHNEEAV 224
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
M+ +++++N G IC + K GG G+ S I+ + VA+ + + K+ + A + +
Sbjct: 225 MTGRMTVTVNANGDICSIQKAGGEGVMQSRIMHCLRVASRNAESITKKIKDAVEAYNTER 284
>gi|227827678|ref|YP_002829458.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.14.25]
gi|229584882|ref|YP_002843384.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.16.27]
gi|259645402|sp|C3N5R4.1|ECX2_SULIA RecName: Full=Probable exosome complex exonuclease 2
gi|259645405|sp|C3MVG5.1|ECX2_SULIM RecName: Full=Probable exosome complex exonuclease 2
gi|227459474|gb|ACP38160.1| 3' exoribonuclease [Sulfolobus islandicus M.14.25]
gi|228019932|gb|ACP55339.1| 3' exoribonuclease [Sulfolobus islandicus M.16.27]
Length = 275
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + ++ E + PV+T ++ KV K+ IVD L+EES M + V
Sbjct: 173 VEQDSNGFR-------VNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKV 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S I G+ K G + I + A V+ +L+++L ++
Sbjct: 226 SFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQL 273
>gi|170292235|pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292237|pdb|2PO0|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292240|pdb|2PO1|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292242|pdb|2PO2|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
Length = 277
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 13/198 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 57 LGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 116
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 117 IRESKA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPK 171
Query: 121 VHVAAEAASDEQPEVDISDE-EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V E EV+ DE E L + VPV T K+G +VD +L+EE M +
Sbjct: 172 VRYNEETG-----EVETLDETEPLPVEKIPVPV--TFAKIGNILVVDPSLDEELVMDGKI 224
Query: 180 SISINRQGHICGMIKRGG 197
+I+ + GHI + K G
Sbjct: 225 TITTDETGHISAVQKSEG 242
>gi|227830375|ref|YP_002832155.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
L.S.2.15]
gi|229579193|ref|YP_002837591.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
Y.G.57.14]
gi|238619849|ref|YP_002914675.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
M.16.4]
gi|284997881|ref|YP_003419648.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
gi|259645403|sp|C4KHE3.1|ECX2_SULIK RecName: Full=Probable exosome complex exonuclease 2
gi|259645404|sp|C3MQ47.1|ECX2_SULIL RecName: Full=Probable exosome complex exonuclease 2
gi|259645407|sp|C3NED0.1|ECX2_SULIY RecName: Full=Probable exosome complex exonuclease 2
gi|227456823|gb|ACP35510.1| 3' exoribonuclease [Sulfolobus islandicus L.S.2.15]
gi|228009907|gb|ACP45669.1| 3' exoribonuclease [Sulfolobus islandicus Y.G.57.14]
gi|238380919|gb|ACR42007.1| 3' exoribonuclease [Sulfolobus islandicus M.16.4]
gi|284445776|gb|ADB87278.1| 3'exoribonuclease [Sulfolobus islandicus L.D.8.5]
Length = 275
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + ++ E + PV+T ++ KV K+ IVD L+EES M + V
Sbjct: 173 VEQDSNGFR-------VNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKV 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S I G+ K G + I + A V+ +L+++L ++
Sbjct: 226 SFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQL 273
>gi|229582055|ref|YP_002840454.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus islandicus
Y.N.15.51]
gi|259645406|sp|C3NHC2.1|ECX2_SULIN RecName: Full=Probable exosome complex exonuclease 2
gi|228012771|gb|ACP48532.1| 3' exoribonuclease [Sulfolobus islandicus Y.N.15.51]
Length = 275
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + ++ E + PV+T ++ KV K+ IVD L+EES M + V
Sbjct: 173 VEQDSNGFR-------VNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKV 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S I G+ K G + I + A V+ +L+++L ++
Sbjct: 226 SFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQL 273
>gi|313230944|emb|CBY18942.1| unnamed protein product [Oikopleura dioica]
Length = 441
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 22/243 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +A V L RPS ++P +GK+ V+ P A P+FE + +L+ L+
Sbjct: 50 IGNTRALAHVSCSLDRPSEVRPSEGKIVFKVELPPLASPSFELNKKSAFAIDLNRLLEKA 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ + ID+ L V G+ CW L ++ ++ +GNL DAL A AL + P
Sbjct: 110 IVQSRC-----IDIEELCVRAGEQCWTLRVEVTALNHEGNLSDALCLAAMGALMHFKRPE 164
Query: 121 VHVAAEAASDEQPEVDISDE-EFLQFDTSGVPVITTLTKV-----------GKHYIVDAT 168
V V ++ +DE E + P T+ + K ++D
Sbjct: 165 VTVDGHDV-----KIHTADEKEPTRLTLHHKPFCVTIGYIEDGRTDSDGDRQKILVLDPV 219
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+EE +S +SI+IN+ IC M G LD S IL +A + L ++S I
Sbjct: 220 RQEEQVLSGIISIAINKHREICAMRVSGNRELDCSQILSCTKIAAAKVKDLQSLIESAIK 279
Query: 229 AAD 231
D
Sbjct: 280 KDD 282
>gi|432111599|gb|ELK34704.1| Exosome complex component RRP43 [Myotis davidii]
Length = 307
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 110/234 (47%), Gaps = 14/234 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 85 LGNTAVICGIKAEFAAPPPDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 140
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 141 --IADVIENSQIIPKEDLCISPGKLSWVLYCDLICLDYDGNILDACTCALLAALKNVQLP 198
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 199 EVTINEETA---LAEVNLKKKRYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 253
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA 232
+++ ++ +G +C + + G+GL + + D +S A +++ +D I + A
Sbjct: 254 LTVVMDEEGKLC-CLHKPGIGLTGAKLQDCLSRAVTRHKEIKKLMDEVIKSMKA 306
>gi|429216659|ref|YP_007174649.1| RNase PH-related exoribonuclease [Caldisphaera lagunensis DSM
15908]
gi|429133188|gb|AFZ70200.1| RNase PH-related exoribonuclease [Caldisphaera lagunensis DSM
15908]
Length = 284
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 24/203 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A +K E G P A PD+G + + + P A P FE +E + EL+ +
Sbjct: 58 LGNTQVLAGIKIEPGEPFADMPDEGVLQVHAELVPLASPQFEPGPPDENAIELARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL SLV+ G W L++D ++ DGNL DA A AALS +P
Sbjct: 118 LRDPKA-----VDLKSLVIRPGDKVWMLWLDLYILDYDGNLFDASMLASMAALSTARMP- 171
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPV-----ITTLT--KVGKHYIVDATLEEES 173
E E E+ ++++ S +P+ I T+T K+ + IVD L+EE
Sbjct: 172 -----EFEEMETGEIKLTNK------ISDIPIKLNKRIVTVTTAKIENYIIVDPNLDEEI 220
Query: 174 QMSSAVSISINRQGHICGMIKRG 196
+ IS + G+I G+ K G
Sbjct: 221 ISDTRSVISFDENGNIVGVQKTG 243
>gi|218884634|ref|YP_002429016.1| exosome complex RNA-binding protein Rrp42 [Desulfurococcus
kamchatkensis 1221n]
gi|218766250|gb|ACL11649.1| Probable exosome complex exonuclease 2 [Desulfurococcus
kamchatkensis 1221n]
Length = 286
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 29/230 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VK EL P +P +G + + + P A P+FE +E + E++ +
Sbjct: 58 LGGTQVIAGVKLELEEPFPDRPGEGVLQVHAEFVPLASPSFEPGPPDENAIEVARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ + L +L + GK+ W +Y D ++ GN++D A AL+ + IP
Sbjct: 118 LRESKA-----VKLDALAIEPGKIVWSVYTDIYLVDHQGNIIDTGMLASMLALATSRIPE 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSG----VPVITTLTKV-----GKHYIVDATLEE 171
+ I E + D + +P+ T + V IVD LEE
Sbjct: 173 L---------------IKGENGYKVDHTKYVGPLPINTLVATVTMGIYNDVIIVDPLLEE 217
Query: 172 ESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
E+ + S ++I+I+ G ICG+ KRG G SV+ + I +A R+L+D
Sbjct: 218 EAVIDSFITIAIDESGRICGIQKRGMKGFSRSVLDNTIEIALSKGRELVD 267
>gi|226372912|gb|ACO52081.1| Exosome complex exonuclease RRP43 [Rana catesbeiana]
Length = 272
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 13/227 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+ VI +KAE P P+KG + V+ +P P F G GEE A+++S
Sbjct: 53 IGNCTVICGIKAEFATPPIDAPNKGYIVPNVELTPLCSPRFRPGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + GNLLD A+ A+L N +P
Sbjct: 109 --IADVIENSQMILKEDLCIENGKLAWVLYCDLICLDYGGNLLDTCMCALVASLRNARLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSA 178
SV + E +V++S L+ P+ T+ KH +VD T EEES +
Sbjct: 167 SVKINEETG---LAQVNLSTRNALKIHKH--PLSTSFAIFDNKHILVDPTNEEESLATGL 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
++I + G +C + K GG L + D IS A +++ + LDS
Sbjct: 222 MTIVTDEDGRLCTIRKPGGSALSAEKLQDCISRAITRHKEVQNLLDS 268
>gi|389852856|ref|YP_006355090.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. ST04]
gi|388250162|gb|AFK23015.1| putative exosome complex RNA-binding protein Rrp42 [Pyrococcus sp.
ST04]
Length = 266
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 44 LGSTQVLVGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 103
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 104 IRESRA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALMNARVPK 158
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V E E EE +PV T K+G +VD +LEEE M ++
Sbjct: 159 VRYNEETEEVE------ILEEKEPLPVEKIPVPVTFAKIGNTLVVDPSLEEEQVMDGRLT 212
Query: 181 ISINRQGHICGMIKRGG 197
I+ + GHI + K G
Sbjct: 213 ITTDETGHISAVQKSEG 229
>gi|15897635|ref|NP_342240.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
P2]
gi|284174961|ref|ZP_06388930.1| exosome complex RNA-binding protein Rrp42 [Sulfolobus solfataricus
98/2]
gi|384434250|ref|YP_005643608.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
gi|29337006|sp|Q9UXC0.1|ECX2_SULSO RecName: Full=Probable exosome complex exonuclease 2
gi|71042716|pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome
gi|71042718|pdb|2BR2|C Chain C, Rnase Ph Core Of The Archaeal Exosome
gi|71042720|pdb|2BR2|E Chain E, Rnase Ph Core Of The Archaeal Exosome
gi|71042722|pdb|2BR2|G Chain G, Rnase Ph Core Of The Archaeal Exosome
gi|71042724|pdb|2BR2|I Chain I, Rnase Ph Core Of The Archaeal Exosome
gi|71042726|pdb|2BR2|K Chain K, Rnase Ph Core Of The Archaeal Exosome
gi|71042728|pdb|2BR2|M Chain M, Rnase Ph Core Of The Archaeal Exosome
gi|71042730|pdb|2BR2|O Chain O, Rnase Ph Core Of The Archaeal Exosome
gi|71042732|pdb|2BR2|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome
gi|71042734|pdb|2BR2|S Chain S, Rnase Ph Core Of The Archaeal Exosome
gi|71042736|pdb|2BR2|U Chain U, Rnase Ph Core Of The Archaeal Exosome
gi|71042738|pdb|2BR2|W Chain W, Rnase Ph Core Of The Archaeal Exosome
gi|83754538|pdb|2C37|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754540|pdb|2C37|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754542|pdb|2C37|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754544|pdb|2C37|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754546|pdb|2C37|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754548|pdb|2C37|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754550|pdb|2C37|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754552|pdb|2C37|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754554|pdb|2C37|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754556|pdb|2C37|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754558|pdb|2C37|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754560|pdb|2C37|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754562|pdb|2C38|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754566|pdb|2C38|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754568|pdb|2C38|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754570|pdb|2C38|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754572|pdb|2C38|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754574|pdb|2C38|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754576|pdb|2C38|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754578|pdb|2C38|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754580|pdb|2C38|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754582|pdb|2C38|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754586|pdb|2C39|A Chain A, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754588|pdb|2C39|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754590|pdb|2C39|E Chain E, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754592|pdb|2C39|G Chain G, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754594|pdb|2C39|I Chain I, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754596|pdb|2C39|K Chain K, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754598|pdb|2C39|M Chain M, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754600|pdb|2C39|O Chain O, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754602|pdb|2C39|Q Chain Q, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754604|pdb|2C39|S Chain S, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754606|pdb|2C39|U Chain U, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754608|pdb|2C39|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|313507220|pdb|2C38|C Chain C, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|313507221|pdb|2C38|W Chain W, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|6015744|emb|CAB57571.1| conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|13813902|gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602404|gb|ACX92007.1| 3' exoribonuclease [Sulfolobus solfataricus 98/2]
Length = 275
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + S ++ E + PV+T ++ KV K+ +VD L+EES M + +
Sbjct: 173 VEQHSNGIS-------VNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKI 225
Query: 180 SISINRQGHICGMIKRG 196
S S I G+ K G
Sbjct: 226 SFSYTPDLKIVGIQKSG 242
>gi|385773350|ref|YP_005645916.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
gi|385775988|ref|YP_005648556.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
gi|323474736|gb|ADX85342.1| 3' exoribonuclease [Sulfolobus islandicus REY15A]
gi|323477464|gb|ADX82702.1| 3' exoribonuclease [Sulfolobus islandicus HVE10/4]
Length = 275
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + ++ E + PV+T ++ K+ K+ IVD L+EES M + V
Sbjct: 173 VEQDSNGFR-------VNKNEVVGKLPLNHPVVTVSIAKIDKYLIVDPDLDEESIMDTKV 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S I G+ K G + I + A V+ +L+++L ++
Sbjct: 226 SFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQL 273
>gi|126031137|pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome
gi|145579800|pdb|2JEA|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579804|pdb|2JEB|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943801|pdb|4BA1|A Chain A, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943804|pdb|4BA2|A Chain A, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 277
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 60 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 119
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 120 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 174
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + S ++ E + PV+T ++ KV K+ +VD L+EES M + +
Sbjct: 175 VEQHSNGIS-------VNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKI 227
Query: 180 SISINRQGHICGMIKRG 196
S S I G+ K G
Sbjct: 228 SFSYTPDLKIVGIQKSG 244
>gi|348541677|ref|XP_003458313.1| PREDICTED: exosome complex component RRP43-like [Oreochromis
niloticus]
Length = 277
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 107/229 (46%), Gaps = 12/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T +I +KAEL P+ P KG + VD P F G GEE A A Q
Sbjct: 53 LGNTTIICGIKAELANPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEEAQA----ASQ- 107
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I L + GK+CW LY D + + DGN+LDA A+ AAL NT +P
Sbjct: 108 -FIADVIESSEVIKTEDLSIDRGKLCWVLYCDLMCLDYDGNILDACVIALLAALKNTRLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V + E ++ PEV++ LQ V + I D T EEE+ ++ +
Sbjct: 167 EVTINKETSA---PEVNLEKRWELQIHKHLVSASFCIFD-DSILISDPTAEEETLSTAHL 222
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
++ + +C + K GG L + + IS A R++ KL +++A
Sbjct: 223 TVVTDEDDRLCSVHKPGGTSLSGERLQECISRATTRQREIQ-KLIAKVA 270
>gi|52548653|gb|AAU82502.1| tRNA nucleotidyltransferase [uncultured archaeon GZfos18B6]
Length = 238
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 19/222 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P P+KG + + P A P FE E S EL+ +
Sbjct: 31 IGDTVVLVGVKVEPGAPFPDTPNKGVLMTNAELVPLASPEFESGPPGENSIELARVVDRG 90
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G ++ IDL L + EG+ W ++ID + +DGNL+DA +L N IP
Sbjct: 91 IRGSET-----IDLEKLCIEEGEKVWMIFIDIHTLDNDGNLVDAAALGAIMSLLNVTIPY 145
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
++ E+ LQ + PV T+ ++G + +VD + EES +S ++
Sbjct: 146 EQYG------------LTGEDTLQIRDT--PVAVTVVEIGGNLLVDPNVYEESAATSKLT 191
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDK 222
+ N G I G+ K G GL I+ M + +R++ +K
Sbjct: 192 VISNADGSISGLQKSGSSGLTEEKIVKMTEIGIEKAREIREK 233
>gi|320591825|gb|EFX04264.1| exosome subunit rrp45 [Grosmannia clavigera kw1407]
Length = 294
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 111/240 (46%), Gaps = 31/240 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A AE+ P + +P G I + SP A P+FE E LS L+
Sbjct: 51 IGNTRVVAKATAEVTTPFSDRPFDGIFNIVTELSPMASPSFEAGRPSEAEVLLSRILEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN----- 115
+ +SGA +D SL + G CW + +D V+S +GNL+DA A+ AAL +
Sbjct: 111 I--RRSGA---LDTESLCLAAGNKCWSVRVDVHVMSHEGNLVDASCLAVVAALRHFRKAE 165
Query: 116 ----TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV----GKHYIVDA 167
G+ +V+ AE E + P T + + ++DA
Sbjct: 166 TSIENGVLTVYTPAE-------------REPVPLSWLHSPFCVTFSFFEADDTEITLLDA 212
Query: 168 TLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+L EE S+ +ISINR G IC + K GG ++ IL S+A ++ L LD ++
Sbjct: 213 SLLEEQTRVSSCTISINRHGEICQVAKLGGTPVEAVTILKCTSIALAKAKDLSVFLDKKL 272
>gi|254675240|ref|NP_001157042.1| exosome complex component RRP43 isoform 1 [Mus musculus]
Length = 280
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 107/233 (45%), Gaps = 17/233 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIF----VDCSPTAEPTFE-GRGGEELSAELSS 55
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVFLSVPNVDLPPLCSSRFRTGPPGEE--AQVTS 110
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N
Sbjct: 111 QF----IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKN 166
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQ 174
+P V + E A EV++ + +L T+ PV T+ IVD T EEE
Sbjct: 167 VQLPEVTINEETA---LAEVNLKKKSYLNVRTN--PVATSFAVFDDTLLIVDPTGEEEHL 221
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ +++ + G +C + K GG GL + + D +S A +++ LD I
Sbjct: 222 STGTLTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVI 274
>gi|327264085|ref|XP_003216847.1| PREDICTED: exosome complex exonuclease RRP43-like [Anolis
carolinensis]
Length = 277
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 18/231 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAE---LSSA 56
+G+T V+ +KAE P A +KG + VD P F G GEE A ++
Sbjct: 55 LGNTTVVCGIKAEFAAPLADSSNKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFVADV 114
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++ + K L +V+GK+ W LY D + + DGNLLDA A AAL N
Sbjct: 115 IENSQVVMKE---------DLCIVDGKIAWVLYCDIICLDYDGNLLDACMCAFLAALRNV 165
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P+V + E E ++ +E + PV T+ IVD T EEE +
Sbjct: 166 QLPAVTINEETGLAE-----VNLKEKIPLTIRKEPVATSFILFDTVMIVDPTAEEEDLAT 220
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
++I + +G +C + K GG L + + D IS A +++ +D I
Sbjct: 221 GMLTIVTDEEGKLCSVHKPGGSALTGAKLQDCISRATARYKEVKKLIDKVI 271
>gi|298674552|ref|YP_003726302.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
gi|298287540|gb|ADI73506.1| 3' exoribonuclease [Methanohalobium evestigatum Z-7303]
Length = 260
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 19/226 (8%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T +I VK ++G P PDKG + ++ +P A P FE +E + E++ + +
Sbjct: 54 GDTQLIVGVKLQVGEPFPDTPDKGIIITSLELNPIASPDFEAGPPKEDAIEIARVVDRGI 113
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
+SGA IDL+ L + EG+ W ++ID V++ DGN++DA AAL T IP+
Sbjct: 114 R--ESGA---IDLNKLCITEGEEVWTVFIDVNVLNDDGNIMDAASIGAIAALMTTNIPA- 167
Query: 122 HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSI 181
+E ++ + +PV +L + +VD T EES + +++
Sbjct: 168 --ESEGYGED-----------MMMPVRDIPVGISLVDISGELMVDPTYNEESVCDTKITV 214
Query: 182 SINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
N+ G I M K G L +L ++A + ++ +K S I
Sbjct: 215 VSNQDGSISAMQKSGTGSLTEEKVLQAANIARTRASEIREKYLSNI 260
>gi|390939120|ref|YP_006402858.1| 3' exoribonuclease [Desulfurococcus fermentans DSM 16532]
gi|390192227|gb|AFL67283.1| 3' exoribonuclease [Desulfurococcus fermentans DSM 16532]
Length = 286
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 29/230 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VK EL P +P +G + + + P A P+FE +E + E++ +
Sbjct: 58 LGGTQVIAGVKLELEEPFPDRPGEGVLQVHAEFVPLASPSFEPGPPDENAIEVARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ + L +L + GK+ W +Y D ++ GN++D A AL+ + IP
Sbjct: 118 LRESKA-----VKLDALAIEPGKIAWSVYTDIYLVDHQGNIIDTSMLASMLALATSRIPE 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSG----VPVITTLTKV-----GKHYIVDATLEE 171
+ I E + D + +P+ T + V IVD LEE
Sbjct: 173 L---------------IKGENGYKVDHTKYVGPLPINTLVATVTMGIYNDVIIVDPLLEE 217
Query: 172 ESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
E+ + S ++I+I+ G ICG+ KRG G S++ + + +A R+L+D
Sbjct: 218 EAVIDSFITIAIDESGRICGIQKRGMKGFSRSILDNAVEIALSKGRELVD 267
>gi|296081159|emb|CBI18185.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 16/231 (6%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGA 68
V +L +P +P++G ++I+ + SP A+P+FE GR GE + EL + L ++
Sbjct: 4 VTGQLIQPYRDRPNEGTLSIYTEFSPMADPSFEAGRPGE-AAVELGRVIDRGLRESRA-- 60
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
+D+ SL V+ GK+ W + ID +I + GNL+DA A AAL P E
Sbjct: 61 ---VDMESLCVLAGKLVWSIRIDLHIIDNGGNLIDAANIAALAALLTFRRPECSFGGEDG 117
Query: 129 SD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQMSSAVSISI 183
+ PEV E L +P+ T +G I +D T EE+ M ++ ++
Sbjct: 118 QELIVHPPEV----REPLPLIVHHLPIAVTFAIIGNENIMVIDPTHSEEAVMGGRMTATL 173
Query: 184 NRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
N G +C + K GG G+ SVI+ + +A+ + + K+ + + A + +
Sbjct: 174 NTNGDVCAIQKAGGEGIIQSVIMQCLRIASVKAADITSKIKNAVEAFNTER 224
>gi|225708190|gb|ACO09941.1| Exosome complex exonuclease RRP45 [Osmerus mordax]
Length = 398
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 19/219 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P +P G + V+ SP A P FE EL +L+ L+ C
Sbjct: 50 LGKTRVMTQVSCELVVPKDNRPSDGIMFFNVELSPMASPGFEVGRQSELLVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K D SL VV G+ W + +D V++ DGNL+DA A ALS+ P
Sbjct: 110 LRNSKC-----FDTESLCVVSGEKVWQIRVDVHVLNHDGNLMDAASVAAITALSHFRRPD 164
Query: 121 VHVAAEAA----SDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQ 174
V + E S+E+ + +S +P+ + + + G + +VD EE
Sbjct: 165 VGIHGEEVTVYGSEERDPIPLS--------IYHMPICVSFSFFQQGTYLLVDPCEREERV 216
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
M + I++N+ IC + GG+ L +L +A+
Sbjct: 217 MDGLLMIAMNKHREICSIQSSGGIMLLKEQVLRCSKIAS 255
>gi|10640638|emb|CAC12416.1| rRNA processing protein (yeast RRP45) related protein [Thermoplasma
acidophilum]
Length = 240
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 21/199 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E G P PD+G + V+ P A P+FE +L+ E+S +
Sbjct: 36 LGNTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRG 95
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I LV+ +GK W +++D V+ DGNL+DA A AAL N +P+
Sbjct: 96 IRESKM-----ISPEKLVIEQGKKVWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPA 150
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ E D + S P+ T+ K+G + D +LEE+ ++
Sbjct: 151 ---SKEGGED------------FKLPVSSTPISVTMVKIGDTLVCDPSLEEDQICGGRIT 195
Query: 181 ISINRQGHICGMIKRGGVG 199
++ GHI M ++G +G
Sbjct: 196 VTTTEDGHIRAM-QKGEIG 213
>gi|444726907|gb|ELW67422.1| Exosome complex component RRP43 [Tupaia chinensis]
Length = 248
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 94/202 (46%), Gaps = 13/202 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PDKG + VD P F G GEE A+++
Sbjct: 53 LGNTTVICGVKAEFAAPPTDTPDKGYIIPNVDLPPLCSSRFRSGPPGEE--AQVAGQFTA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 YVIKNSQI----IQKEDLFISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLARGT 221
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ + ++ +G +C + K GG GL
Sbjct: 222 LMVVMDEEGKLCCLHKPGGSGL 243
>gi|19075183|ref|NP_587683.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe 972h-]
gi|21759396|sp|O74918.1|RRP45_SCHPO RecName: Full=Exosome complex component rrp45; AltName:
Full=Ribosomal RNA-processing protein 45
gi|3702641|emb|CAA21233.1| exosome subunit Rrp45 (predicted) [Schizosaccharomyces pombe]
Length = 291
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 19/212 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
G T V+A + E+ +P +P G +I + +P A FE GR ++ +S + A
Sbjct: 51 FGHTRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKA 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +S A +D SL ++ G+ CW + I+ DGNL+DA A+ AAL +
Sbjct: 111 VR------RSNA---LDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHF 161
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQ 174
P + V E + E + + +P+ T + G+ IVDATLEEE
Sbjct: 162 RRPELTVVGEEVTVHPVEERVP----VPLSILHMPICVTFSFFNNGELAIVDATLEEEDL 217
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVIL 206
+ +++I++N+ +C + K GG+ +DPS I+
Sbjct: 218 CNGSMTITLNKNREVCQIYKAGGIIIDPSKII 249
>gi|125539848|gb|EAY86243.1| hypothetical protein OsI_07612 [Oryza sativa Indica Group]
Length = 408
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 29/246 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ A+L +P +P++G +AIF + SP A+P FE GR GE + EL +
Sbjct: 53 LGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGES-AIELGRVVDR 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG-------------NLLDALG 106
L ++ +D+ SL VV GK W + +D ++ + G NL+DA
Sbjct: 112 GLRESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAAN 166
Query: 107 AAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHY 163
A AALS P V E +V + D E L +P+ T G+
Sbjct: 167 IAALAALSTFRRPECTVGGEDGQ----QVTVHDPEVRDPLPLTIHHLPIAVTFAYFGEGN 222
Query: 164 I--VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
I +D T +EE+ M ++ +IN G +C + K GG G+ SVI+ + +A+ + +
Sbjct: 223 IMVIDPTYKEEAVMGGRMTATINSNGDVCSIQKAGGEGVMSSVIMQCLRIASVKAADITS 282
Query: 222 KLDSEI 227
K+ +E+
Sbjct: 283 KIKNEV 288
>gi|15232342|ref|NP_191609.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|42572741|ref|NP_974466.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|334186154|ref|NP_001190143.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|7287998|emb|CAB81836.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
gi|28393589|gb|AAO42214.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
gi|28973593|gb|AAO64121.1| putative nucleolar autoantigen protein [Arabidopsis thaliana]
gi|113196170|gb|ABI31441.1| CER7 [Arabidopsis thaliana]
gi|332646547|gb|AEE80068.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|332646548|gb|AEE80069.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
gi|332646549|gb|AEE80070.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana]
Length = 438
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 14/218 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P++G ++IF + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 114 GLRESRA-----VDTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRP 168
Query: 120 SVHVAAEAASDE--QPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV--DATLEEESQM 175
V E + P + + E L +P+ T K IV D T EE+ M
Sbjct: 169 DCTVGGENGQEVIIHP---LEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVM 225
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
+++++N G IC + K G G++ SVIL + +A+
Sbjct: 226 CGRMTVTVNANGDICAIQKPGEEGVNQSVILHCLRLAS 263
>gi|16082607|ref|NP_394748.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma acidophilum
DSM 1728]
gi|29336948|sp|Q9HIP1.2|ECX2_THEAC RecName: Full=Probable exosome complex exonuclease 2
Length = 260
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 21/199 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E G P PD+G + V+ P A P+FE +L+ E+S +
Sbjct: 56 LGNTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRG 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I LV+ +GK W +++D V+ DGNL+DA A AAL N +P+
Sbjct: 116 IRESKM-----ISPEKLVIEQGKKVWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPA 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ E D + S P+ T+ K+G + D +LEE+ ++
Sbjct: 171 ---SKEGGED------------FKLPVSSTPISVTMVKIGDTLVCDPSLEEDQICGGRIT 215
Query: 181 ISINRQGHICGMIKRGGVG 199
++ GHI M ++G +G
Sbjct: 216 VTTTEDGHIRAM-QKGEIG 233
>gi|443726519|gb|ELU13639.1| hypothetical protein CAPTEDRAFT_176766 [Capitella teleta]
Length = 340
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 20/219 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGG-EELSAELSSALQH 59
+G++ V+ V E+ P +P +G + + V+ SP A PTFE G + EL+ L+
Sbjct: 50 LGNSIVMTQVSCEVTPPKQTRPSEGILFVNVELSPMASPTFEPGGRMSDFGVELNRLLER 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
CL + +D SL ++ G W + +D V++ DGNL+D A+ AAL++ P
Sbjct: 110 CLKESRC-----VDTESLCIMAGLKVWTIRVDCHVLNYDGNLVDCCSASAIAALAHFRRP 164
Query: 120 SVHVAAEAAS----DEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEES 173
V V+ E + DE+ + +S +P+ T GK+ +VD +L+EE
Sbjct: 165 DVSVSGEEVTIHTLDERDPIPLS--------IHHMPLCVTFAFFSQGKYLLVDPSLKEEK 216
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
M + I +N+ IC + G + + +L ++A
Sbjct: 217 VMDGKMVIGMNKHREICTLQMSGNMLIMKDQVLRCSNIA 255
>gi|295322022|pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322023|pdb|3M85|H Chain H, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322024|pdb|3M85|I Chain I, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 259
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 19/223 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK + G P+ PD+G + + + P A PTFE +E S EL+ +
Sbjct: 53 LGDTQVVVGVKMQPGEPAPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DLS LV+ EG+ W +++D + DGNLLDA A AAL NT +P+
Sbjct: 113 IRESEA-----VDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPA 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
D+ ++ L +PV T VG Y+VD + EE S + ++
Sbjct: 168 ER------------FDLGEDYLLP--VRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
I+ ++ ++ M K GG LD + +++ V+ +R+L +K
Sbjct: 214 ITTDKDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLREKF 256
>gi|52549527|gb|AAU83376.1| 3'-5' exoribonuclease [uncultured archaeon GZfos27G5]
Length = 257
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 19/211 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK ELG P PDKG + + P A P FE E S +L+ +
Sbjct: 53 IGDTEVLVGVKVELGTPFPDTPDKGVIITNAELVPLASPKFESGPPNENSIQLARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G ++ IDL L + EG+ W ++ID V+ +GNL+DA +L N IP+
Sbjct: 113 IRGSET-----IDLDKLCIEEGEKVWMVFIDIHVLDDNGNLVDAAALGAITSLLNLRIPN 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
++ E L + PV T+ ++ + +VD + +E + +S+V+
Sbjct: 168 ERYG------------LTGENTLPMRDT--PVAATMVEIEGNILVDPSFDEGNAAASSVT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISV 211
+ N G + GM K G GL + I +M+ +
Sbjct: 214 VISNADGTLSGMQKSGSSGLKEAQIAEMVEI 244
>gi|400601572|gb|EJP69215.1| 3' exoribonuclease family protein [Beauveria bassiana ARSEF 2860]
Length = 297
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 16/235 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V AE+ P + +P G I + SP A P+FE E LS L+
Sbjct: 51 LGKTKVLAKVSAEVTVPFSDRPFDGVFTIASELSPMAAPSFEVNRPTETEVILSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G+ CW + +D V++ +GNLLD A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLIAGQKCWSVRVDLHVLAHEGNLLDTSCLAVVAALRHFRKPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG-------KHYIVDATLEEES 173
+ + P + + P T + G + ++D T EE
Sbjct: 166 TTMEGGVLTVYTPAERVP----VPLSWLHSPFCVTFSFFGGNGDEEEEKVLLDTTWLEEQ 221
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+S+ + S+NR G IC + K GG +D + + A +++ D +D E+A
Sbjct: 222 LRTSSCTFSMNRHGEICQISKLGGDAVDAPLFVACAQRALGKTKEFTDLVDRELA 276
>gi|154301511|ref|XP_001551168.1| hypothetical protein BC1G_10425 [Botryotinia fuckeliana B05.10]
Length = 244
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 19/214 (8%)
Query: 6 VIASVKAELGRPSAMQPDK---GKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLL 62
V+ ++ AE+ P PD+ G I + SP A P FE E LS L+ L
Sbjct: 6 VLVNITAEVTSPF---PDRLFDGIFTITTELSPMASPAFETNRPTEQEVLLSRLLEKTL- 61
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
A +D SL ++ G+ CW + D ++S DGNL+DA AI AAL + P
Sbjct: 62 ----RRSAALDTESLCLIAGQKCWSVRADVHILSHDGNLIDASCIAIIAALQHFRKPDTS 117
Query: 123 VAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK----HYIVDATLEEESQMSSA 178
E + +++ E + P+ T + GK +VD L EE +
Sbjct: 118 TEGETVT----VYTLAEREPVPLSLLHFPLCVTFSFYGKGQEQTRLVDTNLMEEQLREGS 173
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+IS+NR G +C + K GG+ +D +L ++A
Sbjct: 174 CTISMNRHGEVCQIAKLGGIAVDAVELLQCTNIA 207
>gi|344281856|ref|XP_003412693.1| PREDICTED: exosome complex component RRP43-like [Loxodonta
africana]
Length = 282
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG + VD P F G GEE A+++S
Sbjct: 59 LGNTTVICGIKAEFAAPPTDAPDKGYIVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 114
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + +GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 115 --IADVIENSQIIQKEDLCISQGKLAWVLYCDLICLDYDGNILDASTFALLAALKNVQLP 172
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V++ E A EV++ + L + PV T+ IVD T EEE +
Sbjct: 173 EVNINEETA---LAEVNLKKKTHL--NIRNYPVATSFAIFDDTLLIVDPTGEEEHLATGT 227
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ + G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 228 LTVVTDEGGRLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 275
>gi|18399822|ref|NP_566441.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|79313209|ref|NP_001030684.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|334185300|ref|NP_001189874.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|15795131|dbj|BAB02509.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
gi|27765042|gb|AAO23642.1| At3g12990 [Arabidopsis thaliana]
gi|110742714|dbj|BAE99268.1| hypothetical protein [Arabidopsis thaliana]
gi|332641750|gb|AEE75271.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|332641751|gb|AEE75272.1| ribonuclease PH45A [Arabidopsis thaliana]
gi|332641752|gb|AEE75273.1| ribonuclease PH45A [Arabidopsis thaliana]
Length = 307
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 14/218 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V A+L +P +P +G +IF + SP A+P+FE E + EL +
Sbjct: 55 LGQTHVMAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRA 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 115 LRESRA-----VDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPD 169
Query: 121 VHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV--DATLEEESQM 175
V + + D PE + E L +P+ T K I+ D T EE+ M
Sbjct: 170 CTVGGDNSQDVIIHPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVM 225
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
+++++N G IC + K G G++ SVIL + +A+
Sbjct: 226 CGRMTVTVNANGDICAIQKPGEEGVNQSVILHCLRLAS 263
>gi|297817356|ref|XP_002876561.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
lyrata]
gi|297322399|gb|EFH52820.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp.
lyrata]
Length = 438
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 110/218 (50%), Gaps = 16/218 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A++ +P +P++G ++IF + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTAQMVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGES-AVELGRIIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL ++ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 114 GLRESRA-----VDTESLCILAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRP 168
Query: 120 SVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV--DATLEEESQ 174
V E + PE + E L +P+ T K IV D T EE+
Sbjct: 169 DCTVGGENGQEVIIHPPE----EREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAV 224
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
M +++++N G IC + K G G++ SVIL + +A
Sbjct: 225 MCGRMTVTVNANGDICAIQKPGEEGVNQSVILHCLRLA 262
>gi|21536581|gb|AAM60913.1| nucleolar autoantigen-like protein [Arabidopsis thaliana]
Length = 307
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 14/218 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V A+L +P +P +G +IF + SP A+P+FE E + EL +
Sbjct: 55 LGQTHVMAFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRA 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 115 LRESRA-----VDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPD 169
Query: 121 VHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV--DATLEEESQM 175
V + + D PE + E L +P+ T K I+ D T EE+ M
Sbjct: 170 CTVGGDNSQDVIIHPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVM 225
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
+++++N G IC + K G G++ SVIL + +A+
Sbjct: 226 CGRMTVTVNANGDICAIQKPGEEGVNQSVILHCLRLAS 263
>gi|355686810|gb|AER98194.1| exosome component 8 [Mustela putorius furo]
Length = 246
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 96/202 (47%), Gaps = 13/202 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQFIA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 DVIENSQI----IQKEDLCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETG---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+++ ++ +G +C + K GG GL
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGL 243
>gi|383319304|ref|YP_005380145.1| RNase PH-related exoribonuclease [Methanocella conradii HZ254]
gi|379320674|gb|AFC99626.1| RNase PH-related exoribonuclease [Methanocella conradii HZ254]
Length = 259
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 19/224 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G + V+ +K + G P PD G + ++ P A PTFE E + EL+ +
Sbjct: 53 IGESQVVVGIKVQPGEPFPDAPDSGVIITNLELVPLASPTFEAGPPREDAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA IDLS L + G+ W ++ID V+ DGNL+DA AAL NT IP+
Sbjct: 113 VR--ESGA---IDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDASSLGAIAALMNTVIPN 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
E ++ +P+ T +G ++D +L+EE+ S ++
Sbjct: 168 SRFGL--------------GEDVKLPLRDIPIGVTAVDIGGAIMLDPSLDEENVASCKLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
+ N++G + GM K G L P + ++ +A + + +KL+
Sbjct: 214 VITNKEGALAGMQKSGVGTLTPEKVKYIVHLAKEKANVIREKLE 257
>gi|340386062|ref|XP_003391527.1| PREDICTED: putative exosome complex exonuclease RRP42-like, partial
[Amphimedon queenslandica]
Length = 155
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
Query: 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISD 139
+ G+ CW +Y+D LV+ G +LD L A+K AL+NT IP + V E E SD
Sbjct: 1 IPGQDCWIIYVDALVLEYSGGVLDCLSIAVKGALANTKIPKLTVIGEGEEQEIEI---SD 57
Query: 140 EEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG 197
F DT+ VPV +L+ +G +IVDA+ EEE+ +S+ +N +G IC ++K G
Sbjct: 58 NPFDSTSIDTNNVPVFVSLSLIGNQFIVDASHEEEACSLCQLSVGVNHKGSICSILKEGA 117
Query: 198 VGLDPSVILDMISVANFVSRQLMDKL 223
+ IS+A+ + +++K+
Sbjct: 118 GSFKHKQYNEAISLASEIGVSVIEKI 143
>gi|325969193|ref|YP_004245385.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
gi|323708396|gb|ADY01883.1| 3' exoribonuclease [Vulcanisaeta moutnovskia 768-28]
Length = 283
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 9/197 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E+G+P PD+G + + ++ +P A P E +E + E++ +
Sbjct: 58 LGNTKVMAGVKVEVGKPFEDTPDEGALIVNLEIAPAASPDIEPGPPDENAIEIARVVDRA 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ SG ++ SL +V G+ W L++D V++ DGNL+DA A AL NT +P
Sbjct: 118 I--RHSGF---LNFKSLSIVTGRHAWFLWVDIYVLNHDGNLVDASTIAAITALMNTALPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V + + +D S++ L + +P+ T K+G +VD T EEE +S +
Sbjct: 173 VEL---DPAGNILRIDRSNKSPLALNVDKLPLTITHAKLGNFLLVDPTREEE-DLSDGIY 228
Query: 181 ISINRQGHICGMIKRGG 197
I+ G++ + K G
Sbjct: 229 ITGIAGGNVVAIQKVTG 245
>gi|11498105|ref|NP_069330.1| exosome complex RNA-binding protein Rrp42 [Archaeoglobus fulgidus
DSM 4304]
gi|29336575|sp|O29756.1|ECX2_ARCFU RecName: Full=Probable exosome complex exonuclease 2
gi|83754328|pdb|2BA0|I Chain I, Archaeal Exosome Core
gi|83754329|pdb|2BA0|H Chain H, Archaeal Exosome Core
gi|83754330|pdb|2BA0|G Chain G, Archaeal Exosome Core
gi|83754337|pdb|2BA1|G Chain G, Archaeal Exosome Core
gi|83754338|pdb|2BA1|H Chain H, Archaeal Exosome Core
gi|83754339|pdb|2BA1|I Chain I, Archaeal Exosome Core
gi|295322010|pdb|3M7N|G Chain G, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322011|pdb|3M7N|H Chain H, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322012|pdb|3M7N|I Chain I, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|2650132|gb|AAB90743.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 259
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 19/223 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK + G P PD+G + + + P A PTFE +E S EL+ +
Sbjct: 53 LGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DLS LV+ EG+ W +++D + DGNLLDA A AAL NT +P+
Sbjct: 113 I-----RESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPA 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
D+ ++ L +PV T VG Y+VD + EE S + ++
Sbjct: 168 ER------------FDLGEDYLLP--VRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
I+ ++ ++ M K GG LD + +++ V+ +R+L +K
Sbjct: 214 ITTDKDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLREKF 256
>gi|301109940|ref|XP_002904050.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
T30-4]
gi|262096176|gb|EEY54228.1| exosome complex exonuclease RRP43, putative [Phytophthora infestans
T30-4]
Length = 283
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 21/231 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ ++K +G P+ PD+G++AI V SP F GR EE + + S L
Sbjct: 66 LGKTSVLTAIKLAVGTPAVATPDQGELAIQVHLSPLCSNRFTVGRPSEE-AQSIGSQLTR 124
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + +++ SL +V+G+ W L +D + DGN+LDA +I AAL +P
Sbjct: 125 VIAGSRV-----VEMESLSIVKGQSAWKLMVDVYGVDHDGNVLDAALTSIIAALKTLKLP 179
Query: 120 SVHVAAEAASDEQPEVD-----ISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
+ V EVD + D + T+ V ++D T EE
Sbjct: 180 ATSVN---------EVDNVVSIVPDGDATPLRVEHGAYATSFAMVDDVVLIDPTSAEEGL 230
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
S+ S+S + G +CG+ K GG + PSV+ +++A +++L +D+
Sbjct: 231 SSAVFSLSYSTDGQLCGVHKAGGSIVAPSVMQQCMTIAKRNTKELAKLVDA 281
>gi|332157778|ref|YP_004423057.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
gi|331033241|gb|AEC51053.1| exosome complex RNA-binding protein Rrp42 [Pyrococcus sp. NA2]
Length = 274
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 IGNTQVLVGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V E EV++ +E+ +PV T K+G +VD +L+EE M ++
Sbjct: 169 VRYNEETG-----EVEVLEEK-EPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMEGRLT 222
Query: 181 ISINRQGHICGMIKRGG 197
I+ + GHI + K G
Sbjct: 223 ITTDETGHISAVQKSEG 239
>gi|40217447|emb|CAE46380.1| 3'-5' exoribonuclease [uncultured archaeon]
gi|268323830|emb|CBH37418.1| 3'-5' exoribonuclase [uncultured archaeon]
Length = 260
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 19/222 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P P+KG + + P A P FE E S EL+ +
Sbjct: 53 IGDTVVLVGVKVEPGEPFPDTPNKGILMTNAELVPLASPEFESGPPGENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G ++ IDL L + EG+ W ++ID + +DGNL+DA +L N IP
Sbjct: 113 IRGSET-----IDLEKLCIEEGEKVWMIFIDIHTLDNDGNLVDAAALGAIMSLLNVAIPY 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
++ E+ LQ + PV T+ ++ + +VD + EES +S ++
Sbjct: 168 EQYG------------LTGEDTLQIRDT--PVAVTVVEIRGNLLVDPNVYEESAATSKLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDK 222
+ N G I G+ K G GL I+ M + +R++ +K
Sbjct: 214 VISNADGSISGLQKSGSNGLTEEKIVKMTEIGIEKAREIREK 255
>gi|296423319|ref|XP_002841202.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637437|emb|CAZ85393.1| unnamed protein product [Tuber melanosporum]
Length = 293
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 19/207 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T V+A V AE+ +P +P G I + P A P FE GR E+ LS + A
Sbjct: 51 LGKTRVLARVSAEVVKPFTDRPFDGIFTITTELGPMASPAFEPGRQTEQEVLLSRLIEKA 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +S A +D SL +V G+ CW + D +S DG L+DA A+ AAL +
Sbjct: 111 IR------RSNA---LDTESLCIVAGQKCWQIRADVHFLSHDGALVDASCIAVVAALQHF 161
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQ 174
P V V E + +++ + VP+ T + G+ +VDATL+EE
Sbjct: 162 RRPDVSVEGEKVTIHT----MTERIPVPLSILHVPICVTFSFYLDGEVCLVDATLQEEQL 217
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLD 201
++I++N+ G +C + K GG+ ++
Sbjct: 218 RQGDMTITLNKFGELCQIAKAGGLAIN 244
>gi|83283987|gb|ABC01901.1| 3'-5'-exoribonuclease/RNA binding-like protein [Solanum tuberosum]
Length = 303
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 26/243 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST ++A++K E+ P+ PD+G +AI P P E+++ +S L
Sbjct: 67 IGSTTMLAAIKMEIMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEVASVISKQLSDT 126
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L SG IDL L +V GK W Y+D + +DG+L DA + AA S+ IP
Sbjct: 127 ILS--SGM---IDLKELCLVGGKAAWMAYLDIYCLDADGSLFDAALLSTVAAFSHLNIPV 181
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG-------------KHYIV-D 166
V + +E + + E+ +Q PV T K+ K+YI+ D
Sbjct: 182 VSL------NEDGRIVLVSEDNIQLKLEKQPVNTEKRKLKLNSPPFSLTCLLHKNYILAD 235
Query: 167 ATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDKLDS 225
T EEES M +AV++ ++ + + K GG V SVI D +++A ++L L+
Sbjct: 236 PTAEEESIMETAVTVVLDSSYQLVSLYKPGGPVHAHTSVIQDCVALAKRRVKELQSVLNE 295
Query: 226 EIA 228
I+
Sbjct: 296 AIS 298
>gi|327274166|ref|XP_003221849.1| PREDICTED: exosome complex exonuclease RRP45-like [Anolis
carolinensis]
Length = 439
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ V EL P + +G + ++ SP A P FE EL +L+ L+ C
Sbjct: 50 LGKTRILGQVSCELVTPKPNRATEGILFFNLELSPMASPAFEPGRQPELLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D V++ +GNL+DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHVLNHNGNLIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G +VD + +EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTFLLVDPSEQEERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTIQSSGGIML 242
>gi|169621181|ref|XP_001804001.1| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
gi|160704198|gb|EAT78822.2| hypothetical protein SNOG_13798 [Phaeosphaeria nodorum SN15]
Length = 292
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 15/238 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A + ++ P + G I + SP A P FE + LS L+
Sbjct: 51 LGKTRVVARISIDVTTPLPERKFDGVFQIVTEFSPMASPAFEIGRPTDAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G C+ L D VI DG L+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCIIAGLKCFALRADVHVIDHDGGLIDASCIAVMAALQHFRRPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V V E A+ + + + + + P+ T + G+ ++VDA L EE
Sbjct: 166 VLVEGEKAT----VLSVRERDPIPLSILHQPLCVTFSYFAEGELFLVDANLAEEQVRQGE 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA----NFVSRQLMDKLDSEIAAADA 232
++I++N+ G IC + K GG ++P +L +VA +S+ + KLD + DA
Sbjct: 222 ITITMNKHGEICQIAKYGGATVNPLAMLQCTNVALQKVKEMSKFIQQKLDEDAKRRDA 279
>gi|383856603|ref|XP_003703797.1| PREDICTED: exosome complex component RRP43-like [Megachile
rotundata]
Length = 278
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 12/211 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +KAEL P P+ G + V+ SP P F + + +S+ + +
Sbjct: 53 IGSTTVVCGIKAELTTPRTESPEYGYIVPNVELSPLCSPKFRPGPPSDQAQIISNLINNI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ A IDL L + +GK+ W LY D L I+ DG+++DA A+ AAL+ +P
Sbjct: 113 LINS-----AAIDLKDLCICKGKLAWVLYCDLLCINYDGSVIDACVGALTAALNTLTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQMSSAV 179
V + S + + + + +PV T +V D T EEE+ +
Sbjct: 168 VVYNIQTGS-----ISVHSTKKISLSIKELPVSITFAIFNDQLLVADPTDEEENLCLGRL 222
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMIS 210
+I +N++ IC + K GG+ + + L ++
Sbjct: 223 TIVLNKE-KICCIHKPGGIPISYDLFLKSLT 252
>gi|224054532|ref|XP_002298307.1| predicted protein [Populus trichocarpa]
gi|222845565|gb|EEE83112.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 119/240 (49%), Gaps = 16/240 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V +L +P + ++G + IF + SP A+P+FE GR GE + EL +
Sbjct: 57 LGQTHVMGFVTGQLVQPYQDRRNEGMLLIFTEFSPMADPSFEPGRPGES-AVELGRIVDR 115
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL V+ GK+ W + ID ++ + GNL+DA A AAL P
Sbjct: 116 GLRESRA-----VDTESLCVLSGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRP 170
Query: 120 SVHVAAEAASDEQPEVDIS---DEEFLQFDTSGVPVITTLTKVGKH--YIVDATLEEESQ 174
+ D+ EV + + E L +P+ T +G +VD T EE+
Sbjct: 171 ECTLGG----DDGQEVTVHPPEEREPLPLIVHHLPIAITFAFLGSEGKMVVDPTHSEEAV 226
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
M +++++N G IC + K GG G+ SVI+ + +A+ + + K+++ + A +
Sbjct: 227 MGGRMTVTVNAIGDICSIQKAGGEGVPQSVIMHCLQLASMSAESITKKINNAVEAYSTER 286
>gi|340515703|gb|EGR45955.1| predicted protein [Trichoderma reesei QM6a]
Length = 296
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 12/226 (5%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
++A V AE+ P A +P G I + P P++E E L+ L+ + +
Sbjct: 59 LLAKVSAEVTVPFADRPFDGIFQITSELGPMVAPSYEVNRPTETEVLLARLLEKTI--RR 116
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
SGA +D SL +V G+ CW + +D V+S+DGNL+D+ A+ AAL + P +
Sbjct: 117 SGA---LDTESLCLVAGQKCWSVRVDLHVLSADGNLIDSACFAVVAALRHFRKPDTSIEG 173
Query: 126 EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMSSAVSIS 182
E + P ++ E + P T G +VD T EE ++ + S
Sbjct: 174 ETLTVYTP----AEREPVPLSWLHSPFCATFDFFGDEGDIVVVDTTWLEEQLRVASCTFS 229
Query: 183 INRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+N+ G IC + K GG ++ ++++ +A ++ D LD+++A
Sbjct: 230 LNKHGEICQISKLGGRPIEATLVIQCAQMALAKVKEFTDLLDAKLA 275
>gi|322709290|gb|EFZ00866.1| 3' exoribonuclease [Metarhizium anisopliae ARSEF 23]
Length = 288
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 20/227 (8%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
++A V AE+ P +P G I + SP A P+FE E LS L+ + +
Sbjct: 51 IVARVSAEVTVPFTDRPFDGIFTISSELSPMAAPSFEVNRPTEQEVLLSRILEKTI--RR 108
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
SGA +D SL +V G+ CW + D V+S DGNLLD A+ AAL + P +
Sbjct: 109 SGA---LDTESLCLVAGQKCWSVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMDG 165
Query: 126 EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV---GKHYIVDATLEEESQMSSAVSIS 182
E + P ++ E + P T + G+ ++D T EE ++ + S
Sbjct: 166 ETLTVYTP----AEREPVALSWLHSPFCVTFSFFGHDGETVLMDTTWLEEQLRVTSCTFS 221
Query: 183 INRQGHICGMIKRGGVGLDPSVI-------LDMISV-ANFVSRQLMD 221
+N+ G IC + K GG +D + LD + V + V R+LM+
Sbjct: 222 LNKHGEICQVSKLGGADVDAPLFVRCAQLALDRVKVFTDLVDRKLME 268
>gi|453085196|gb|EMF13239.1| exoribonuclease [Mycosphaerella populorum SO2202]
Length = 299
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 113/241 (46%), Gaps = 20/241 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ ++ AE+ P + G I + SP A P FE ++ LS L+
Sbjct: 51 IGKTRVLVNISAEVVVPYVDRKFDGVFTISTELSPIASPAFEVGRQDQTEIILSRILEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ C+ + D V+ DGNL+DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCIVAGQKCFHIRADIHVLDHDGNLVDASCLALVAALMHFRRPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V V E E + + E ++ P T++ G+ + DATL EE
Sbjct: 166 VEVHGE----EVTVFSVREREPVRLSMQHQPFCVTMSYYEGGEIVLQDATLLEEHVREGE 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVAN--FVSRQLMDKLDSEIAAADADEDE 236
+ ISINR G +C + K GG +D + M+S N +++DKL A +EDE
Sbjct: 222 IVISINRFGEVCQIAKYGGTPVDG---MSMLSCTNAALEKAKMLDKL----VKAKLEEDE 274
Query: 237 S 237
Sbjct: 275 K 275
>gi|348667912|gb|EGZ07737.1| hypothetical protein PHYSODRAFT_529521 [Phytophthora sojae]
Length = 283
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 13/227 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ ++K +G P+ PD+G++A+ V SP F E S +SS L
Sbjct: 66 LGKTSVLTAIKLAVGTPAVATPDQGEIAVQVHLSPLCSNRFSVGRPSEESQSISSQLTRI 125
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++G + +++ SL +V+G+ W L +D + DGN+LDA +I AAL +P+
Sbjct: 126 IVGSRV-----VEMESLSIVKGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALKTLKLPA 180
Query: 121 VHVAAEAASDEQPEV--DISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V +E V + DE+ T+ V ++D T +EE S+
Sbjct: 181 TSV------NEADNVVSIVPDEDATPLRVEHCAYATSFAVVEDSVLIDPTSDEEDLASAV 234
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
S+S + G +CG+ K GG + P V+ + VA + L +D+
Sbjct: 235 FSLSYSTNGQLCGVHKAGGTIVAPHVMQQCMQVAKRNTEALAKLVDA 281
>gi|452000347|gb|EMD92808.1| hypothetical protein COCHEDRAFT_1020759 [Cochliobolus
heterostrophus C5]
Length = 291
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 10/214 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA + ++ P + G I + SP A P FE + LS L+
Sbjct: 51 LGKTRVIARISVDVTTPPPERKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G C+ L D ++ DG L+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCIIAGLKCFALRADVHIVDHDGGLIDASCIAVMAALQHFRRPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSAV 179
V V E A+ + + + E + P+ T + G+ ++VDA L EE V
Sbjct: 166 VVVEGEKATI----LSVREHEPIPLSILHQPLCVTFSYFEGELFLVDANLAEEQVRQGEV 221
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
I++N+ G +C + K GG + P IL+ ++A
Sbjct: 222 IITMNKHGEVCQIAKYGGATIHPLAILNCTNIAQ 255
>gi|387915884|gb|AFK11551.1| exosome complex component RRP43 [Callorhinchus milii]
Length = 291
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 106/238 (44%), Gaps = 32/238 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSA-------- 51
+G+T V+ +K E P+ P+KG V VD P F G GE+ A
Sbjct: 53 LGNTTVVCGIKMEFAVPTVDAPNKGYVVPNVDLPPLCSSRFRPGPPGEQAQAASQFIADV 112
Query: 52 -ELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIK 110
E S LQ L + +GK+ W +Y D + + DGNLLDA A+
Sbjct: 113 IENSQFLQK---------------EDLCIEKGKLVWVVYCDMMCLDYDGNLLDACIIALL 157
Query: 111 AALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATL 169
AAL N +P V ++ E EVD++ + Q + PV T+ +IVD T
Sbjct: 158 AALKNVQLPPVSISVETG---LAEVDMNQKN--QLNIRKHPVATSFAIFDDTIFIVDPTA 212
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
EEE+ S +I ++ + +C + K GG G + D I A R++ KL SE+
Sbjct: 213 EEETLASGMATIVVDEEDRLCAVHKPGGSGASGEKLQDCIVRAQTRHREVY-KLLSEV 269
>gi|408404984|ref|YP_006862967.1| exosome complex exonuclease [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408365580|gb|AFU59310.1| putative exosome complex exonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 274
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 15/199 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G ++VIA +K E G P +KG + + + PTA P E +E EL+ +
Sbjct: 58 LGDSEVIAGIKVETGEPFEGLEEKGALIVTAEVLPTASPYIEPGPPDEEVVELARVVDRG 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL LV+V GK+ + +++D VI++DGNL DA A+ A+L +P
Sbjct: 118 VRESEM-----IDLDQLVLVPGKIVYTIFVDCSVINADGNLFDATSYAVVASLLTAKLPI 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ + + VD + T +PV T ++G + ++D T EEE M + ++
Sbjct: 173 LEMKDDKV------VDTGQTRPMPVTT--IPVSITAARIGDYVVIDPTAEEEGCMDARIT 224
Query: 181 ISINRQGHICGMIKRGGVG 199
I+ N +G C I++G G
Sbjct: 225 ITTNDEG-FCA-IQKGHTG 241
>gi|52548824|gb|AAU82673.1| 3'-5' exoribonuclease [uncultured archaeon GZfos19A5]
Length = 257
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 19/211 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK ELG P PDKG + + P A P FE E S +L+ +
Sbjct: 53 IGDTEVLVGVKVELGTPFPDTPDKGVIITNAELVPLASPKFESGPPNENSIQLARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G ++ IDL L + EG+ W ++ID V+ +GNL+DA +L N IP+
Sbjct: 113 IRGSET-----IDLDKLCIEEGEKVWMVFIDIHVLDDNGNLVDAAALGAITSLLNLRIPN 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
++ E L + PV T ++ + +VD + +E + +S+V+
Sbjct: 168 ERYG------------LTGENTLPMRDT--PVAVTTVEIEGNILVDPSFDEGNAAASSVT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISV 211
+ N G + GM K G GL + I +M+ +
Sbjct: 214 VISNADGALSGMQKSGSGGLKEAQIAEMVEI 244
>gi|358381167|gb|EHK18843.1| hypothetical protein TRIVIDRAFT_193923 [Trichoderma virens Gv29-8]
Length = 293
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V AE+ P +P G I + P P+FE E L+ L+
Sbjct: 51 LGKTRVLAKVSAEVTVPFPDRPFDGIFQITSELGPMVAPSFEVNRPTETEVLLARLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S+DGNL+D+ A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLVAGQKCWSVRVDLHVLSADGNLIDSSCFAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMSS 177
+ E + ++ E + P T+ G+ +VD T EE
Sbjct: 166 TSMEGETLTI----YTAAEREPVPLSWLHSPFCTSFDFFGEDGEIVLVDTTWLEEQLRVG 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ + S+N+ G IC + K GG ++ ++I+ +A ++ D +D ++A
Sbjct: 222 SCTFSLNKHGEICQISKLGGKPIEATLIIQCAQMALAKVKEFTDLVDRKLA 272
>gi|222623035|gb|EEE57167.1| hypothetical protein OsJ_07096 [Oryza sativa Japonica Group]
Length = 417
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 29/243 (11%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLL 62
T V+ A+L +P +P++G +AIF + SP A+P FE GR GE + EL + L
Sbjct: 65 TRVMGYATAQLVQPYKDRPNQGTLAIFTEFSPIADPAFEPGRPGES-AIELGRVVDRGLR 123
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG-------------NLLDALGAAI 109
++ +D+ SL VV GK W + +D ++ + G NL+DA A
Sbjct: 124 ESRA-----VDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAANIAA 178
Query: 110 KAALSNTGIPSVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYI-- 164
AALS P V E +V + D E L +P+ T G+ I
Sbjct: 179 LAALSTFRRPECTVGGEDGQ----QVTVHDPEVRDPLPLTIHHLPIAVTFAYFGEGNIMV 234
Query: 165 VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
+D T +EE+ M ++ +IN G +C + K GG G+ SVI+ + +A+ + + K+
Sbjct: 235 IDPTYKEEAVMGGRMTATINSNGDVCSIQKAGGEGVMSSVIMQCLRIASVKAADITSKIK 294
Query: 225 SEI 227
+E+
Sbjct: 295 NEV 297
>gi|303279202|ref|XP_003058894.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460054|gb|EEH57349.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 292
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 125/242 (51%), Gaps = 14/242 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A A+L P + ++G V I V+ SP A P FE GR GEE S EL+ L+
Sbjct: 55 LGKTRVLAVTSAKLEPPGGGRSNEGSVTINVEFSPMASPNFEPGRPGEEAS-ELAVVLER 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ ++GA +D+ SL V+ G+ W++ +D V+ + GN+ A A A+L + P
Sbjct: 114 AI--RETGA---VDVESLCVLAGRRVWNIRVDVHVLDACGNIAGAASLAANASLLSFRRP 168
Query: 120 SVHVAAEAASDEQPEVDISD-EEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQM 175
V S + V +D E + +P+ +H IVD ++EE+ M
Sbjct: 169 EATVDP---STQLVTVHPADAREPIPLALHHLPIAVKFGFFAEHEGLLIVDPLVDEEAVM 225
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADED 235
+S++ + +N G +C + K GGVG+ + I+ + +A+ ++++L +L E + + D
Sbjct: 226 ASSLIVVLNAHGELCAVQKGGGVGVPANEIMRCVRIADKMTKELTTQLREEHKKWEGERD 285
Query: 236 ES 237
+
Sbjct: 286 KR 287
>gi|345569202|gb|EGX52070.1| hypothetical protein AOL_s00043g460 [Arthrobotrys oligospora ATCC
24927]
Length = 298
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 23/216 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A + AE+ RP +P +G I + P A P+FE +L LS L+
Sbjct: 51 LGKTRVLARISAEIIRPRPDRPFEGTFTISTEMGPMASPSFEVGRPTDLDNTLSRLLEKS 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL +V + W L D +S DGNL+D A AL++ +P
Sbjct: 111 I-----RRSTALDLESLCIVTAQRVWSLRADLHFLSHDGNLIDTACIATITALAHFRLPV 165
Query: 121 VHVAAEAAS----DEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH------YIVDATLE 170
V V+ E + E+ V +S L + P+ T + G+ ++DAT +
Sbjct: 166 VTVSGEDITIHPVTERVPVPLS---LLHW-----PICVTFSFFGEDDDGEMVCVLDATAQ 217
Query: 171 EESQMSSAVSISINRQGHICGMIKRGGVGLDPSVIL 206
EE+ +++++N+ G +C + K GGV ++ ++
Sbjct: 218 EEALREGDMTVTVNKNGEVCQISKSGGVAVEAETLM 253
>gi|13541139|ref|NP_110827.1| exosome complex RNA-binding protein Rrp42 [Thermoplasma volcanium
GSS1]
gi|29336898|sp|Q97BZ4.1|ECX2_THEVO RecName: Full=Probable exosome complex exonuclease 2
gi|14324526|dbj|BAB59453.1| nucleotidyltransferase [Thermoplasma volcanium GSS1]
Length = 260
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 21/200 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E G P PD+G + V+ P A P+FE +L+ E+S +
Sbjct: 56 LGKTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRG 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I LV+ +GK W +++D V+ DGNL+DA A +AL N +P+
Sbjct: 116 IRESKM-----ISPDKLVIEQGKKVWIVFLDINVLDYDGNLIDACTIAAVSALRNAIVPA 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ E D + P+ T+ K+G + D +LEE+ ++
Sbjct: 171 ---SREGGED------------FKLPVVNTPISVTMVKIGDTLVCDPSLEEDQICGGRIT 215
Query: 181 ISINRQGHICGMIKRGGVGL 200
++ GHI M ++G +G+
Sbjct: 216 VTTTEDGHIRAM-QKGEIGV 234
>gi|407917787|gb|EKG11090.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 292
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 15/238 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + +++ P A + G I + SP A P FE E LS L+
Sbjct: 51 LGKTRVLVRISSDVTAPFADRKFDGIFNISTEFSPMASPAFEVGRQTEAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G C+ + D ++ DGNL+DA AI AAL + P
Sbjct: 111 I--RRSGA---LDTESLCIVAGSKCFSVRADVNILDHDGNLIDASCIAIIAALQHFRRPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
+ V E + P + E + P+ T + G+ +VDAT EE
Sbjct: 166 IAVEGEKVTVFSPR----EREPVPLSMLHHPLCVTFSYYNNGEIILVDATAAEEQVREGE 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA----NFVSRQLMDKLDSEIAAADA 232
V I++N+ G IC + K GG +DP IL +VA +++ + KL+ + DA
Sbjct: 222 VIITMNKFGEICQIAKYGGTPVDPLAILQCNNVALSKVQTLTKYIQGKLEEDAKKRDA 279
>gi|330935982|ref|XP_003305202.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
gi|311317878|gb|EFQ86700.1| hypothetical protein PTT_17982 [Pyrenophora teres f. teres 0-1]
Length = 291
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T VIA + ++ P + G I + SP A P FE GR + LS L A
Sbjct: 51 LGKTRVIARISVDVTTPLPERKFDGIFQIVTEFSPMASPAFEVGRPTDSEVILSRILEKA 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +S A +D SL ++ G C+ L D +I DG L+DA A+ AAL +
Sbjct: 111 IR------RSNA---LDTESLCIIAGSKCFALRADVHIIDHDGGLIDASCIAVMAALQHF 161
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQM 175
P V V E A+ + + D E + P+ T + +++DA L EE
Sbjct: 162 RRPDVVVEGEKATI----LSVRDREPIPLSILHQPLCVTFSYFEDEIFLIDANLAEEQVR 217
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ +++N+ G +C M K GG ++P +L+ +VA
Sbjct: 218 QGEIILTMNKHGELCQMAKYGGATINPLALLNCTNVA 254
>gi|322699612|gb|EFY91372.1| 3' exoribonuclease [Metarhizium acridum CQMa 102]
Length = 288
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 20/227 (8%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
++A V AE+ P +P G +I + SP P+FE E LS L+ + +
Sbjct: 51 IVAKVSAEVTVPFTDRPFDGIFSISSELSPMVAPSFEVNRPTEQEVLLSRILEKTI--RR 108
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
SGA +D SL +V G+ CW + D V+S DGNLLD A+ AAL + P +
Sbjct: 109 SGA---LDTESLCLVAGQKCWSVRADVHVLSHDGNLLDVACFAVVAALRHFRKPETTMEG 165
Query: 126 EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMSSAVSIS 182
E + P ++ E + P T + G ++D T EE S+ + S
Sbjct: 166 ETLTIYTP----AEREPVALSWLHSPFCVTFSFFGHEGETVLMDTTWLEEQLRVSSCTFS 221
Query: 183 INRQGHICGMIKRGGVGLDPSVILDMISVA--------NFVSRQLMD 221
+N+ G IC + K GG +D + + +A + V R+LM+
Sbjct: 222 LNKHGEICQVSKLGGADVDAPLFVRCAQLALERVKVFTDLVDRKLME 268
>gi|390333942|ref|XP_788833.3| PREDICTED: exosome complex component RRP45-like [Strongylocentrotus
purpuratus]
Length = 479
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 11/194 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T ++A V E+ P +P++G++ + ++ SP A TFE + EL+ L+
Sbjct: 48 MGDTRILAQVSCEVVEPKENRPNEGQLFVNLELSPMASTTFEAGRLSDYGIELNRLLERT 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +D+ SL +V G+ W + +D V++ DGN+LD+ A AALS+ P
Sbjct: 108 VKDSRA-----VDVESLCIVAGEKVWKIRLDVHVLNHDGNILDSACLAALAALSHFRRPD 162
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E+ + P+ D + + + +PV T GK +VD T +EE M
Sbjct: 163 VTVIGESVTIHSPQ----DRDPVPLNVHHIPVCVTFAFYHKGKRLLVDPTEKEEKVMEGT 218
Query: 179 VSISINRQGHICGM 192
+ + +N +C M
Sbjct: 219 MVVGMNVHRELCTM 232
>gi|149635838|ref|XP_001511768.1| PREDICTED: exosome complex component RRP43-like [Ornithorhynchus
anatinus]
Length = 276
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P P+KG V VD P F G GEE A+++S +
Sbjct: 53 LGNTTVICGVKAEFTAPPGDAPNKGYVVPNVDLPPLCSSRFRPGPPGEE--AQVASQFIN 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ I L + +GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 111 DVIENSQL----IAKEDLCISKGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
+V + E E ++ ++ + P+ T+ IVD T EEE+ +
Sbjct: 167 AVVINEETGLAE-----VNFKQKTPLNIRAYPIATSFAIFDNTILIVDPTGEEENLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQ-----LMDKL 223
+++ ++ +G +C + K GG L + + D +S A V+R LMD++
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSALAGTKLQDCLSRA--VTRHKEVKVLMDEV 269
>gi|289595859|ref|YP_003482555.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
gi|289533646|gb|ADD07993.1| 3' exoribonuclease [Aciduliprofundum boonei T469]
Length = 270
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T V+ VK E G P P+ G + + +P A PTFE G GEE + EL+ +
Sbjct: 58 LGNTRVLVGVKIEPGTPFPDTPNMGILTTNAELAPLASPTFEPGPPGEE-AIELARVVDR 116
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + IDL LV+ EG+ W ++ID V+ DGNL DA G AAL+N +P
Sbjct: 117 GIREGHA-----IDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNATVP 171
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
+ D+ ++ + PV T K+G + D L+EES S+ +
Sbjct: 172 ASR------------YDLGED--FKLPVQHYPVPVTFAKIGDWIVADPNLDEESIASARL 217
Query: 180 SISINRQGHICGMIK 194
+++ N +G I M K
Sbjct: 218 TVATNEEGKINAMQK 232
>gi|91080613|ref|XP_974147.1| PREDICTED: similar to AGAP002348-PA [Tribolium castaneum]
gi|270005510|gb|EFA01958.1| hypothetical protein TcasGA2_TC007574 [Tribolium castaneum]
Length = 389
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 31/241 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A E+ +P + +P +G + I ++ +P A P FE ELS +L+ L+ C
Sbjct: 53 LGNTKVLAQTSCEIQQPKSSRPSEGILNINIELNPLAAPHFEAGRQSELSVQLNRLLEKC 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ +DL SL + + W L +D V++ +GN+LD A+ A+L++
Sbjct: 113 VKDSKA-----VDLESLCIKTNEKVWALKVDINVLNHEGNILDCASIAMLASLTHF---- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFL-----QFD-----TSGVPVITTLTKV--GKHYIVDAT 168
+P+V EEF+ Q D PV T G++ + D +
Sbjct: 164 ----------RRPDVTCDGEEFIIHSYQQRDPIPTVIHHYPVCITYAIFNGGEYILADPS 213
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
L EE + ++I +N +C + G L PS+IL +S A + +++++ +
Sbjct: 214 LLEEGSADAMLTIGLNGFKELCALHLGGKAELAPSIILSTVSKATSRATVVIEEIKKSVK 273
Query: 229 A 229
A
Sbjct: 274 A 274
>gi|449442545|ref|XP_004139042.1| PREDICTED: exosome complex component RRP45-like [Cucumis sativus]
Length = 452
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 16/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P++G ++I+ + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTAQLVQPYRDRPNEGTLSIYTEFSPMADPSFEPGRPGES-AVELGRVIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 114 GLRESRA-----VDTESLCVVSGKSVWAIRVDLHILDNGGNLVDAANVAALAALSTFRRP 168
Query: 120 SVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQ 174
++ + + PEV E L +P+ T I +D T EE+
Sbjct: 169 ECSLSGDDGQEVIVHPPEV----REPLPLIIHHLPIAVTFAFFRSESILVIDPTHCEEAV 224
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
M +++++N +C + K GG G+ SVI+ + +A+ + + K+ + +
Sbjct: 225 MGGRMTVTLNANNDVCAIQKAGGEGVLKSVIMQCLRIASVKAGDITTKIKNAV 277
>gi|386002837|ref|YP_005921136.1| Exosome complex exonuclease 2 [Methanosaeta harundinacea 6Ac]
gi|357210893|gb|AET65513.1| Exosome complex exonuclease 2 [Methanosaeta harundinacea 6Ac]
Length = 259
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 19/223 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK + G P A P+KG + + P A P FE E+ EL+ +
Sbjct: 53 LGKTRVLVGVKIQPGEPFADTPNKGVIITNAELVPLASPNFEPGPPNEVGIELARVVDR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G +GA IDL SL + G+ W ++ID V+ GNL+DA AAL +P
Sbjct: 112 ---GVRESGA-IDLPSLCIAPGEKVWIVFIDVHVLDDCGNLMDASSLGAIAALMTATVP- 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
AA+ E + + D VPV TT + G I D +EES + ++
Sbjct: 167 ---AAQYGLGEDYPLPVRD----------VPVATTAVEFGDAIIFDPDTDEESVADTKLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ G +CGM K G L I ++ +A ++++ +K
Sbjct: 214 VITTADGSVCGMQKSGPGFLSQDKIYRIVDIACERAKEIREKF 256
>gi|449526860|ref|XP_004170431.1| PREDICTED: exosome complex component RRP45-like [Cucumis sativus]
Length = 454
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 16/234 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V A+L +P +P++G ++I+ + SP A+P+FE GR GE + EL +
Sbjct: 55 LGQTHVMGFVTAQLVQPYRDRPNEGTLSIYTEFSPMADPSFEPGRPGES-AVELGRVIDR 113
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L ++ +D SL VV GK W + +D ++ + GNL+DA A AALS P
Sbjct: 114 GLRESRA-----VDTESLCVVSGKSVWAIRVDLHILDNGGNLVDAANVAALAALSTFRRP 168
Query: 120 SVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQ 174
++ + + PEV E L +P+ T I +D T EE+
Sbjct: 169 ECSLSGDDGQEVIVHPPEV----REPLPLIIHHLPIAVTFAFFRSESILVIDPTHCEEAV 224
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
M +++++N +C + K GG G+ SVI+ + +A+ + + K+ + A
Sbjct: 225 MGGRMTVTLNANNDVCAIQKAGGEGVLKSVIMQCLRIASVKAGDITTKIKMQAA 278
>gi|54400656|ref|NP_001006077.1| exosome complex exonuclease RRP45 [Danio rerio]
gi|53734430|gb|AAH83243.1| Exosome component 9 [Danio rerio]
gi|182889156|gb|AAI64713.1| Exosc9 protein [Danio rerio]
Length = 393
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 11/215 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V++ V EL P +P +G V ++ SP A P FE EL L+ L+ C
Sbjct: 50 LGKTRVLSQVSCELVPPKDSRPTEGIVFFNLELSPMASPAFEPNRQSELLVTLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D V++ DGNL+DA A +ALS+ P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V + + PE + + + +P+ + G +VD EE
Sbjct: 165 VAIQGRDVTVFGPE----ERDPIPLSIYHMPICVSFAFFLQGSFLLVDPCEREERVKDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
+ I++N+ IC + GG+ L +L +A+
Sbjct: 221 LVIAMNKHREICSIQSSGGIMLLKEQVLRCSKIAS 255
>gi|451850324|gb|EMD63626.1| hypothetical protein COCSADRAFT_26966 [Cochliobolus sativus ND90Pr]
Length = 291
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 10/214 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA + ++ P + G I + SP A P FE + LS L+
Sbjct: 51 LGKTRVIARISVDVTTPPPERKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G C+ L D ++ DG L+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCIIAGLKCFALRADVHIVDHDGGLIDASCIAVMAALQHFRRPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSAV 179
V V E A+ + + + E + P+ T + G+ ++VDA L EE V
Sbjct: 166 VVVEGEKATI----LSVREREPIPLSILHQPLCVTFSCFEGEIFLVDANLAEEQVRQGEV 221
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
I++N+ G +C + K GG + P +L+ ++A
Sbjct: 222 IITMNKHGEVCQIAKYGGATIHPLALLNCTNIAQ 255
>gi|118792101|ref|XP_320154.3| AGAP012402-PA [Anopheles gambiae str. PEST]
gi|116116739|gb|EAA00202.3| AGAP012402-PA [Anopheles gambiae str. PEST]
Length = 274
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 11/201 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P+A+ P G + VD SP + P++ + + S ++
Sbjct: 54 VGNTTVVCGIKAELATPNALAPRHGFLVPNVDLSPVSSPSYRPGPPCDEAQVYSQSVADA 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L + GK+ W LY D + + DG +LDA A+ AA +P+
Sbjct: 114 ISNARC-----IDLQQLCISPGKLVWCLYCDLVCLDHDGCVLDAAIIALVAAFHTVKLPT 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ ++ E+ E D S L VPV T+ V I D T EEE S+ ++
Sbjct: 169 IQYNSDT---EETEADTS--RLLPLTVDCVPVTTSFVMVAGRLIADPTTEEEKLASTTLT 223
Query: 181 ISINRQGHICGMIKRGGVGLD 201
++++ G + + GG +D
Sbjct: 224 VTVS-DGKMSFFNQSGGDPMD 243
>gi|358255969|dbj|GAA57561.1| exosome complex component RRP42, partial [Clonorchis sinensis]
Length = 200
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 13/160 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E+G+P + +PD+G++ I V+C PTA +G E++ L LQ
Sbjct: 53 IGETHVLGCVKMEVGKPLSNRPDEGRIEINVECYPTATYASTDKGANEIAENLKITLQS- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S A +DL L + G+ CW +YID L++ GN LDA AIKAAL I +
Sbjct: 112 --AYRSDA---LDLRRLCIQSGRQCWVVYIDLLLLEGGGNFLDAASLAIKAAL----IDA 162
Query: 121 VHVAAEAASDE-QPEVDISDEEFLQFDTSGVPVITTLTKV 159
H+ S + P+ F F +PV T+ KV
Sbjct: 163 THLLDPMNSKQLMPKDTEVTTPF--FSEKLLPVFVTVHKV 200
>gi|91772268|ref|YP_564960.1| exosome complex RNA-binding protein Rrp42 [Methanococcoides
burtonii DSM 6242]
gi|91711283|gb|ABE51210.1| Archaeal exosome complex exoribonuclease [Methanococcoides burtonii
DSM 6242]
Length = 259
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 93/196 (47%), Gaps = 19/196 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK ++G P A DKG + ++ +P A P FE E + E++ +
Sbjct: 52 LGDTQVLVGVKLQVGSPFADSADKGVIITSMELNPIASPNFEAGPPREKAIEMARVVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA IDL+ L + EG+ W ++ID V++ GNLLDA AAL IP
Sbjct: 112 IR--ESGA---IDLNKLCITEGEEVWIVFIDVHVLNDSGNLLDAASLGAIAALMTATIP- 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
E ++ I + +PV + +G ++DAT EES ++
Sbjct: 166 ---GEREGRGEDVKLPIRE----------MPVSLSFIDIGGELVIDATNNEESVSDLRLT 212
Query: 181 ISINRQGHICGMIKRG 196
I N+ G IC M K G
Sbjct: 213 IVTNQDGSICAMQKSG 228
>gi|189206730|ref|XP_001939699.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975792|gb|EDU42418.1| 3' exoribonuclease [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 291
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 10/213 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA + ++ P + G I + SP A P FE + LS L+
Sbjct: 51 LGKTRVIARISVDVTTPLPERKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G C+ L D +I DG L+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCIIAGSKCFALRADVHIIDHDGGLIDASCIAVMAALQHFRRPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAV 179
V V E A+ + + D E + P+ T + +++DA L EE V
Sbjct: 166 VVVEGEKATI----LSVRDREPIPLSILHQPLCVTFSYFEDEIFLIDANLAEEQVRQGEV 221
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+++N+ G +C + K GG ++P +L+ +VA
Sbjct: 222 ILTMNKHGELCQIAKYGGATINPLALLNCTNVA 254
>gi|452843608|gb|EME45543.1| hypothetical protein DOTSEDRAFT_71300 [Dothistroma septosporum
NZE10]
Length = 299
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ ++ AEL P + G I + SP A P FE ++ LS L+
Sbjct: 51 LGKTRVMVTISAELVTPYPDRKFDGVFTISTELSPIASPAFEVGRQDQTEVLLSRILEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G CW + D ++ DGN++DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCIIAGAKCWHIRADIHILDHDGNIVDASCIALVAALMHFRRPD 165
Query: 121 VHVAAEAAS----DEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+ E + E+ V LQ + T+ + G+ + DATL EE
Sbjct: 166 HEIHGEEVTVYGLREREPVK------LQMQHQPFCITTSYYEAGEIMLHDATLLEEQCRE 219
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
V +S+NR G IC + K GG +D IL ++A ++ L DKL A +EDE
Sbjct: 220 GDVVVSVNRFGEICQIAKFGGTLVDGLSILTCTNMALGKAKAL-DKL----VKAKLEEDE 274
Query: 237 S 237
Sbjct: 275 K 275
>gi|126465759|ref|YP_001040868.1| exosome complex RNA-binding protein Rrp42 [Staphylothermus marinus
F1]
gi|126014582|gb|ABN69960.1| ribosomal RNA-processing protein RRP42 [Staphylothermus marinus F1]
Length = 285
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 109/213 (51%), Gaps = 12/213 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VI VK E+G P + +P++G + + + P A PTFE +E + E + +
Sbjct: 58 LGNTFVITGVKLEIGTPYSDRPNEGVLQVHAEFVPLASPTFEPGPPDENAIETARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ I L LVV+ GK W ++ D +I GN++D + AL+ T IP
Sbjct: 118 LREPRA-----IRLEDLVVIPGKKVWLIFNDLYLIDHYGNIVDTGMLSTMLALNMTKIPR 172
Query: 121 VHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
+ V+ E DE +D + +E L + + V V TL + IVD +EEE + S +
Sbjct: 173 I-VSIE---DENVVIDKTVKEAPLPLNLNVVTV--TLGIIDDVIIVDPNIEEELVVDSRI 226
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ +++ I G+ K G G+ P +I ++ +A
Sbjct: 227 TFAVDETNRIVGIQKMGMKGIKPKMIDQLVDIA 259
>gi|50838810|ref|NP_001002865.1| exosome complex exonuclease RRP43 [Danio rerio]
gi|49618917|gb|AAT68043.1| Opa-interacting protein 2 [Danio rerio]
Length = 277
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAEL P + +KG + VD P F G GE+ A A Q
Sbjct: 53 IGNTTVICGIKAELAVPPSEAQNKGYLVPNVDLPPLCSSRFRAGPPGEQAQA----ASQ- 107
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I+L L + + K+CW LY D + + DGNLLDA + AAL +P
Sbjct: 108 -FIADVIESSDLINLEELCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E + EVDI + L+ + PV ++ IVD T EEES ++
Sbjct: 167 EVTINKET---DLAEVDIEKKRRLKINRH--PVGSSFAVFDDSIIIVDPTAEEESLSTAL 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA---NFVSRQLMDKL 223
+++ + + +C + K GG L + I+ A N R+L+DK+
Sbjct: 222 MTVVTDEEDRLCAVHKPGGTSLSGEKLQHCINRALTRNKEIRKLLDKV 269
>gi|66267273|gb|AAH95236.1| Exosome component 8 [Danio rerio]
Length = 277
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAEL P + +KG + VD P F G GE+ A A Q
Sbjct: 53 IGNTTVICGIKAELAVPPSEAQNKGYLVPNVDLPPLCSSRFRAGPPGEQAQA----ASQ- 107
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I+L L + + K+CW LY D + + DGNLLDA + AAL +P
Sbjct: 108 -FIADVIESSDLINLEELCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E + EVDI + L+ + PV ++ IVD T EEES ++
Sbjct: 167 EVTINKET---DLAEVDIEKKRRLKINRH--PVGSSFAVFDDSIIIVDPTAEEESLSTAL 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA---NFVSRQLMDKL 223
+++ + + +C + K GG L + I+ A N R+L+DK+
Sbjct: 222 MTVVTDEEDRLCAVHKPGGTSLSGEKLQHCINRAITRNKEIRKLLDKV 269
>gi|254168306|ref|ZP_04875152.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
gi|197622815|gb|EDY35384.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
Length = 270
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T V+ VK E G P P+ G + + +P A PTFE G GEE + EL+ +
Sbjct: 58 LGNTRVLVGVKIEPGTPFPDTPNMGILTTNAELAPLASPTFEPGPPGEE-AIELARVVDR 116
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + IDL LV+ EG+ W ++ID V+ DGNL DA G AAL+N +P
Sbjct: 117 GIREGHA-----IDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVP 171
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
+ D+ ++ + PV T K+G + D L+EES S+ +
Sbjct: 172 ASR------------YDLGED--FKLPVQHYPVPVTFAKIGDWIVADPNLDEESIASARL 217
Query: 180 SISINRQGHICGMIK 194
+++ N +G I M K
Sbjct: 218 TVATNEEGKINAMQK 232
>gi|182889712|gb|AAI65543.1| Exosc8 protein [Danio rerio]
Length = 277
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAEL P + +KG + VD P F G GE+ A A Q
Sbjct: 53 IGNTTVICGIKAELAVPPSEAQNKGYLVPNVDLPPLCSSRFRAGPPGEQAQA----ASQ- 107
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I+L L + + K+CW LY D + + DGNLLDA + AAL +P
Sbjct: 108 -FIADVIESSDLINLEELCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E + EVDI + L+ + PV ++ IVD T EEES ++
Sbjct: 167 EVTINKET---DLAEVDIEKKRRLKINRH--PVGSSFAVFDDSIIIVDPTAEEESLSTAL 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA---NFVSRQLMDKL 223
+++ + + +C + K GG L + I+ A N R+L+DK+
Sbjct: 222 MTVVTDEEDRLCAVHKPGGTSLSGEKLQHCINRAITRNKEIRKLLDKV 269
>gi|156383487|ref|XP_001632865.1| predicted protein [Nematostella vectensis]
gi|156219927|gb|EDO40802.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V E+ +P + G + I V+ SP A P FE EL EL+ ++
Sbjct: 28 LGKTRVLAQVSCEITKPKTNRQTDGHIYINVELSPMASPAFEAGRMSELGVELNRFVERF 87
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ID SL +V G+ W + +D V+ GN+LD + ALS+ P
Sbjct: 88 YIESRA-----IDTESLCIVAGEKVWSVRVDIQVLDHSGNILDCACISAITALSHFRRPD 142
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V V+ E + +D + + +P+ T G+ +VD +EE+ M
Sbjct: 143 VSVSGEEVTIHSE----ADRDPVPLSILHMPICVTFAFFDNGELLLVDPNDKEEAVMDGH 198
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ +++N +CG + GGV L+ I+ ++A
Sbjct: 199 MMMALNIHREVCGAVMGGGVSLETDQIIRCSNIA 232
>gi|260806963|ref|XP_002598353.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
gi|229283625|gb|EEN54365.1| hypothetical protein BRAFLDRAFT_261208 [Branchiostoma floridae]
Length = 444
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++ P +P +G + I ++ SP A P FE E E++ L+
Sbjct: 50 LGDTKVLAQVSGKIEEPKKNRPTEGSIIINLELSPMASPAFEPGRPTESGIEMNRILERN 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +D SL +V G+ W + D V++ +GN++DA A ALS+ P
Sbjct: 110 IRDSRA-----VDTESLCIVAGEKVWSIRADVHVLNDEGNIMDAASIAAITALSHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V V E + PE D + + +PV T G+ +VD EE M
Sbjct: 165 VSVMGEEVTVHSPE----DRDPVPLSVHHMPVCVTFAFFDQGEFLLVDPNRSEERVMDGR 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ + +N IC ++ GG+ L +L +A
Sbjct: 221 MVVGMNMHREICTLMMSGGMLLVKEQVLRCSQIA 254
>gi|387018402|gb|AFJ51319.1| Exosome complex exonuclease RRP43-like [Crotalus adamanteus]
Length = 276
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 102/233 (43%), Gaps = 27/233 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTF-------EGRGGEELSAEL 53
+G+T VI +KAE P+ +KG + VD P F E + + A++
Sbjct: 57 LGNTTVICGIKAEFATPTVDSSNKGYIIPNVDLPPLCSSRFRPGPPCEEAQAASQFIADI 116
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
Q I L +++GK+ W LY D + + DGNLLDA A AAL
Sbjct: 117 IENSQM------------IMKEDLCILDGKIVWVLYCDIICLDYDGNLLDACICAFLAAL 164
Query: 114 SNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
N +P V + AE EV++ ++ L PV T+ +VD T EEE
Sbjct: 165 KNVLLPVVAINAETG---LVEVNLKEKNPLTIKKQ--PVATSFVLFDTLVVVDPTAEEED 219
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR---QLMDKL 223
S ++I I +C + K GG + + + D IS A + +LMDK+
Sbjct: 220 LASGTLTIVIIENDKLCSVHKPGGRTITEAKLQDCISRAKTRHKEVQKLMDKI 272
>gi|431903093|gb|ELK09269.1| Exosome complex exonuclease RRP43 [Pteropus alecto]
Length = 281
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 21/230 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 59 LGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 114
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 115 --IADVIENSQIIQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 172
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + L T PV T+ IVD T EEE +
Sbjct: 173 EVTINEETA---LAEVNLKKKSCLNIRTH--PVATSFAVFDDTLLIVDPTAEEEHLATGT 227
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ + +C + K G+GL + D +S A V+R +LMD++
Sbjct: 228 LTVVMDEESKLCCLHK-PGIGLTGGKLQDCMSRA--VTRHKEVKKLMDEV 274
>gi|435852007|ref|YP_007313593.1| RNase PH-related exoribonuclease [Methanomethylovorans hollandica
DSM 15978]
gi|433662637|gb|AGB50063.1| RNase PH-related exoribonuclease [Methanomethylovorans hollandica
DSM 15978]
Length = 260
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 19/222 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK ++G P PD+G + ++ +P A P FE E + E++
Sbjct: 53 IGDTQVLVGVKLQVGAPFPDSPDEGVIITNLEMNPLASPDFEAGPPREGAIEMARVTDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA IDL L + EG+ W ++ID V++ DGNL DA AAL + IPS
Sbjct: 113 IR--ESGA---IDLKELCITEGEEVWIVFIDVHVLNDDGNLQDASCLGAIAALMTSKIPS 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
E ++ I D +P+ TL +G +VD L EE+ S ++
Sbjct: 168 ----EREGKGEDVKMPIRD----------IPIGVTLVDIGGELMVDPGLAEETVADSKLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDK 222
I+ N+ G I M K G L +L + +A + ++ +K
Sbjct: 214 IASNKNGSISAMQKTGEGMLTQEQLLKAVDMACAKAEEIREK 255
>gi|157107418|ref|XP_001649768.1| exosome complex exonuclease rrp43 (ribosomal RNA processing protein
43 [Aedes aegypti]
gi|108884054|gb|EAT48279.1| AAEL000659-PA [Aedes aegypti]
Length = 274
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P ++PD G + ++ SP + P + E + S +L
Sbjct: 54 IGNTTVVCGIKAELAPPKPVEPDTGYLVPNIEISPLSSPKYRPGPPSEEAQVYSCSLADA 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L SG ++L L + + ++ W LY D + + DG + DA A+ AAL +P
Sbjct: 114 ILN--SGC---VNLKDLCITKEQLVWALYCDLVCLDHDGCIFDASVIALVAALHTLRLPP 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V + +DE+ EVD D E + + +PV T+ G I D T EEE+ +S ++
Sbjct: 169 VKHNPD--TDER-EVD-EDAERIPLKLNSIPVTTSFAVFGGRIIADPTAEEEALATSTIT 224
Query: 181 ISI 183
I+I
Sbjct: 225 ITI 227
>gi|395520931|ref|XP_003764575.1| PREDICTED: exosome complex component RRP43 [Sarcophilus harrisii]
Length = 276
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P +KG + VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDSLNKGYIVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISHGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
+V + E EV+ + L T P+ T+ IVD T EEE +
Sbjct: 167 AVTINEETG---LAEVNFKKKSHLNIRTH--PIATSFAIFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEINKLMDEV 269
>gi|148225933|ref|NP_001079391.1| exosome component 8 [Xenopus laevis]
gi|27371055|gb|AAH41271.1| MGC52847 protein [Xenopus laevis]
gi|76779666|gb|AAI06634.1| MGC52847 protein [Xenopus laevis]
Length = 276
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 13/235 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+ V+ VKAEL P A PDKG V VD +P F G GEE A+++S
Sbjct: 53 LGNCTVLCGVKAELAAPPADSPDKGYVVPNVDLTPLCSSQFRPGPPGEE--AQVASQFMA 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ + L + GK+ W LY D + + DGNLLD A+ AAL N +P
Sbjct: 111 DVIDNSQM----LLKEDLCIAHGKLAWVLYCDLICLDYDGNLLDTCMCALVAALQNVRLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSA 178
SV + E EV++ + L+ PV T+ +VD T EEES S
Sbjct: 167 SVKINEETG---LAEVNLKTKCALKILKH--PVATSFALFDDTSLLVDPTGEEESLASGL 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
+++ + +C K GG L + + IS A +++ + L +A+ ++
Sbjct: 222 LTVVTDEDERLCATRKPGGSALSAEKLQECISRAITRHKEVTNLLQEALASVKSE 276
>gi|46122263|ref|XP_385685.1| hypothetical protein FG05509.1 [Gibberella zeae PH-1]
Length = 293
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T V+A V AE+ P +P G I + SP P++E LS L+
Sbjct: 51 YGKTRVLAKVSAEVTVPYTDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ GK CW + +D V++ DGNL DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLIAGKKCWSIRVDLHVLAHDGNLTDAACVAVIAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK---HYIVDATLEEESQMSS 177
+ E + P ++ E + P T + G+ +VD EE S
Sbjct: 166 SSIEGETLTIYTP----AEREPVPLSWLHSPFCVTYSFYGEDGSQVLVDTNWLEEKMRVS 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ S+N+ G I + K GG LD + + A S+ L + +D+++A
Sbjct: 222 HCTYSLNKHGEISQISKLGGKALDAPLFIQCAQGALNRSKDLSNIVDNKLA 272
>gi|108864299|gb|ABG22460.1| 3' exoribonuclease family domain 1-containing protein, putative,
expressed [Oryza sativa Japonica Group]
gi|215706902|dbj|BAG93362.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215736842|dbj|BAG95771.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218185641|gb|EEC68068.1| hypothetical protein OsI_35924 [Oryza sativa Indica Group]
gi|222615895|gb|EEE52027.1| hypothetical protein OsJ_33746 [Oryza sativa Japonica Group]
Length = 306
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++AS+K E+ PS PD+G +A+ P P E++ +S L+
Sbjct: 70 LGDTAMLASIKLEVMSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDI 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG ++L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 130 LMS--SGM---LNLKELCLISGKASWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPL 184
Query: 121 VHVAAEA------ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
V V + ++ + + ++ + E + + VP T + + D T EEES
Sbjct: 185 VSVGDDGRVFTVGGNEGKAKYELVNREKRKLTITNVPFSLTCALHKDNVLADPTAEEESI 244
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
+ ++V+I ++ I + K GG + I + IS+A R+L + L + A + D+
Sbjct: 245 IETSVTIVLDSSDQIVSIQKPGGAVTSMTTIKECISLAKDRRRKLREILMDNVEAMEVDQ 304
>gi|427795753|gb|JAA63328.1| Putative exosome component 9, partial [Rhipicephalus pulchellus]
Length = 477
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 14/234 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V AE+ P +P +G++ + ++ SP A P FE GR G+ E++ L+
Sbjct: 96 LGDTKVMAQVSAEIIVPKPGRPTEGELFVNLELSPMAAPHFEAGRLGD-YGVEVARLLER 154
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
C+ + IDL SL VV G+ W L +D V++ GN+++ G A AL + P
Sbjct: 155 CIRDSQC-----IDLESLCVVSGEKVWALRVDAQVLNHQGNIVECAGIATIGALMHFRRP 209
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSS 177
V V + P D E + P + GK ++D T EE
Sbjct: 210 DVTVIGTEVTVHNPR----DREPVPLHLHHYPFLVCFAFYDDGKTVLIDPTDLEERIAEG 265
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
+S++ N IC ++ + G + ++L +A+ ++ L + +EIA D
Sbjct: 266 LLSVAANAHEEIC-LLHQHGCTVRKDLVLLCSRLASVRAKTLATMIKAEIAKDD 318
>gi|14601411|ref|NP_147948.1| exosome complex RNA-binding protein Rrp42 [Aeropyrum pernix K1]
gi|29337018|sp|Q9YC05.1|ECX2_AERPE RecName: Full=Probable exosome complex exonuclease 2
gi|5105129|dbj|BAA80443.1| exosome complex exonuclease Rrp42 homologue [Aeropyrum pernix K1]
Length = 276
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 12/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VKA +G P P++G + + + P A P FE +E + EL+ +
Sbjct: 58 LGKTQVIAGVKAGVGAPFKDTPNQGVLTVHAEFVPLASPVFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L GA +DL SLV+ G+ W L++D +I DGNL DA A A L +P
Sbjct: 118 L----REVGA-VDLESLVIRPGEKVWVLWVDLYIIDHDGNLFDASMLATMAVLLTARLPR 172
Query: 121 VHVAAEAASDEQPEVDISDE-EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
E E+ IS E E + V T K+ ++ +VD +EEE+ +
Sbjct: 173 YE------ESETGEIIISKEGEGEELKVKTRVVTVTTAKIDRYIVVDPNIEEEAVSDVRL 226
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++ G I G+ K G L + I MI + S+ L+ I
Sbjct: 227 VTAVDENGRIVGLQKTGMGSLTEADIETMIGYSLEASKVYFKALEEAI 274
>gi|115485229|ref|NP_001067758.1| Os11g0311300 [Oryza sativa Japonica Group]
gi|113644980|dbj|BAF28121.1| Os11g0311300, partial [Oryza sativa Japonica Group]
Length = 300
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 11/240 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++AS+K E+ PS PD+G +A+ P P E++ +S L+
Sbjct: 64 LGDTAMLASIKLEVMSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDI 123
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG ++L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 124 LMS--SGM---LNLKELCLISGKASWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPL 178
Query: 121 VHVAAEA------ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
V V + ++ + + ++ + E + + VP T + + D T EEES
Sbjct: 179 VSVGDDGRVFTVGGNEGKAKYELVNREKRKLTITNVPFSLTCALHKDNVLADPTAEEESI 238
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
+ ++V+I ++ I + K GG + I + IS+A R+L + L + A + D+
Sbjct: 239 IETSVTIVLDSSDQIVSIQKPGGAVTSMTTIKECISLAKDRRRKLREILMDNVEAMEVDQ 298
>gi|427795691|gb|JAA63297.1| Putative exosome component 9, partial [Rhipicephalus pulchellus]
Length = 514
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 14/234 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V AE+ P +P +G++ + ++ SP A P FE GR G+ E++ L+
Sbjct: 96 LGDTKVMAQVSAEIIVPKPGRPTEGELFVNLELSPMAAPHFEAGRLGD-YGVEVARLLER 154
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
C+ + IDL SL VV G+ W L +D V++ GN+++ G A AL + P
Sbjct: 155 CIRDSQC-----IDLESLCVVSGEKVWALRVDAQVLNHQGNIVECAGIATIGALMHFRRP 209
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSS 177
V V + P D E + P + GK ++D T EE
Sbjct: 210 DVTVIGTEVTVHNPR----DREPVPLHLHHYPFLVCFAFYDDGKTVLIDPTDLEERIAEG 265
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
+S++ N IC ++ + G + ++L +A+ ++ L + +EIA D
Sbjct: 266 LLSVAANAHEEIC-LLHQHGCTVRKDLVLLCSRLASVRAKTLATMIKAEIAKDD 318
>gi|313870783|gb|ADR82276.1| exosome complex exonuclease [Blumeria graminis f. sp. tritici]
Length = 303
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 23/244 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + A V AE+ +P +P +G I + SP E L +S L+
Sbjct: 51 LGGTRIHAHVSAEVTQPYPDRPYEGLFTIVTELSPMTHAHLEPGRNSPLEMLVSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G+ CW + +D V+S +GNL+DA A+ AAL++ P
Sbjct: 111 I--RRSGA---LDPESLCLLAGQTCWSIRVDVHVLSVEGNLIDAASIAVIAALAHFKRPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---------YIVDATLEE 171
+ E +++ E + P+ T + H ++DA E
Sbjct: 166 TNTVG----GEVTLYTLAEREPVPLSLLHWPLCITFSFYKDHSEGASGEDTVLLDANELE 221
Query: 172 ESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
E +++I +N+ G IC ++K GG +D + +L +++A+ +++ S+I A
Sbjct: 222 EHMREGSMTIGMNKHGEICQLVKLGGAPVDAASLLKCVNLASMKVKEV-----SDIIAKQ 276
Query: 232 ADED 235
ED
Sbjct: 277 LQED 280
>gi|327291753|ref|XP_003230585.1| PREDICTED: exosome complex exonuclease RRP42-like, partial [Anolis
carolinensis]
Length = 150
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 99 GNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTL 156
GNL DA+ A+KAAL NT IP V V + E +++SD+ + ++ + VP I TL
Sbjct: 6 GNLFDAISIAVKAALFNTRIPKVRVLDDEGGRE---IELSDDPYDCIRLNVDNVPCIVTL 62
Query: 157 TKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVS 216
+K+G ++VDATL+EE+ +++ IS+ +G + M K G LDP I +M+ V
Sbjct: 63 SKIGYRHVVDATLQEEACSLASLLISVTSRGAMTCMKKVGRGSLDPESIFEMMETGKRVG 122
Query: 217 RQLMDKLDS 225
+ L L +
Sbjct: 123 KLLHTSLQT 131
>gi|291000993|ref|XP_002683063.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
gi|284096692|gb|EFC50319.1| exosome complex exonuclease RRP43 [Naegleria gruberi]
Length = 279
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 8/204 (3%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G+T V+ +KAE+ P+ P GKV I D G EE++ E S +Q L
Sbjct: 59 GNTSVVCGIKAEVMIPTEDAPKNGKVVISFDFPSICAADVTG-NWEEIN-EKKSVIQQRL 116
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
G +DLS L + EGK W LY D + +DGN+ DA A+ AL N +P+
Sbjct: 117 AGIFYNCNV-MDLSQLCIEEGKAVWVLYADLYCLENDGNVFDAALIALLTALKNVSLPTC 175
Query: 122 HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSI 181
+ + DE + + LQ D +P+ + + + IVD T EEES ++ ++I
Sbjct: 176 QITKD---DEAIVTNENSNIKLQLDHYPIPL--SFGNLSEFTIVDPTSEEESLLAWKLTI 230
Query: 182 SINRQGHICGMIKRGGVGLDPSVI 205
N + +C + K GG + S +
Sbjct: 231 VYNERNELCSLFKPGGKSIKQSTL 254
>gi|145592135|ref|YP_001154137.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum arsenaticum
DSM 13514]
gi|145283903|gb|ABP51485.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum arsenaticum DSM
13514]
Length = 276
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 18/188 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T VIA VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVIAGVKVGLGQPFPDAPDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D L V EG + L++D VI+ DGNL+DA A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLAV-EGGKAYVLWVDLYVINDDGNLVDAANLASVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P+V V E+ + ++D +++ L +TS VPV ++ K+ +D EEE +
Sbjct: 169 QLPAV-VKDESGA---VKLDRNNKSPLPLETSKVPVAVSVGKIANVLFLDPNFEEELSLD 224
Query: 177 SAVSISIN 184
V+ +I+
Sbjct: 225 GRVTFTIS 232
>gi|335296834|ref|XP_001927006.3| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP43-like [Sus scrofa]
Length = 246
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 104/229 (45%), Gaps = 48/229 (20%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE G P PDKG + VD SP F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFGAPPTDAPDKGYIVPNVDLSPLCSWRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + ++ DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIXNSQIIQKEDLCISPGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
EV+I+ L IVD T EEE + +
Sbjct: 167 --------------EVNINXXTLL--------------------IVDPTEEEEHLATGTL 192
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 193 TVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 239
>gi|449271151|gb|EMC81699.1| Exosome complex exonuclease RRP45, partial [Columba livia]
Length = 389
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 11/197 (5%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
V+A V EL P +P +G + + SP A P FE EL +++ ++ CL K
Sbjct: 2 VLAQVSCELVPPKPNRPAEGILFFNFELSPMAAPGFEPGRQPELLVKVNRLIERCLRNSK 61
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
+D SL VV G+ W + +D +++ DGN++DA A AL + P V V
Sbjct: 62 C-----VDTESLCVVAGEKVWQIRLDLHLLNHDGNIIDAASIAGIVALCHFRRPDVSVQG 116
Query: 126 EAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSAVSISI 183
E + PE + + + +P+ + G + +VD + EE M + I++
Sbjct: 117 EEVTVYTPE----ERDPVPLSIHHMPICVSFAFYHQGTYLLVDPSEREERVMDGLLVIAM 172
Query: 184 NRQGHICGMIKRGGVGL 200
N+ G IC + GG+ L
Sbjct: 173 NKHGEICTIQSSGGIML 189
>gi|449020127|dbj|BAM83529.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 324
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 125/269 (46%), Gaps = 44/269 (16%)
Query: 3 STDVIASVKAELGR---PSAMQPD--KGKVAIFVDCSPTAEPTFEGRGGEELSAELSSAL 57
+ DV+ + EL + P+ + D +G +A V+ A P F+GR E L AEL S L
Sbjct: 56 TNDVLVGINLELRQYNLPAHAEDDAKRGSIAFSVEFCGVASPEFQGRSTEVLEAELVSFL 115
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKV----------CWDLYIDGLVI-SSDGNLLDALG 106
+ A + L+ L E ++ CWD+Y+D LV+ +S GN+LDA+
Sbjct: 116 D------TAYAASPEFLADLFCREQRLASDPGTLRVCCWDVYVDVLVLGASGGNILDAVT 169
Query: 107 AAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPV------ITTLTK-- 158
A++AAL+ T +PSV+ ++ S E+D E + S P+ I L +
Sbjct: 170 YAVRAALATTVVPSVY-WQDSESGGSWELDDRAEYCALLNASNAPLSASGAFIPPLVRDS 228
Query: 159 ----------VGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDM 208
+ +I+D EEE+ +S++ + H+ + KRG + ++P V+LD
Sbjct: 229 RTEHDQVTLVAPRWFIIDPCAEEETLAGCFLSVASDSAQHLRAIWKRGSLPVEPDVVLDA 288
Query: 209 ISVA---NFVSRQLMDKLDSEIAAADADE 234
+ + Q MD SE+ A + E
Sbjct: 289 AQQCIRDSAYACQEMDHFISELVATEESE 317
>gi|156937004|ref|YP_001434800.1| exosome complex RNA-binding protein Rrp42 [Ignicoccus hospitalis
KIN4/I]
gi|156565988|gb|ABU81393.1| ribosomal RNA-processing protein RRP42 [Ignicoccus hospitalis
KIN4/I]
Length = 276
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 11/228 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E+G+P PD G + + + P A FE +E + EL+ +
Sbjct: 58 IGNTKVLAGVKVEVGKPFKDVPDAGVLNVNAELLPLASSEFEPGPPDENAIELARVIDRA 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + G IDL LV++ G+ +++D V+ DGNL DA A AAL +T P
Sbjct: 118 L--REPGV---IDLKELVLIPGEKVLVVWLDVYVLDHDGNLFDASMLASMAALLDTRYPE 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+V E D EVD +++ L V V TL + ++VD TLEEE +
Sbjct: 173 -YVVRE---DGSVEVDEANKRPLPIANKVVSV--TLNVLENLFMVDPTLEEEVVADGKIV 226
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ + +G + G+ K G LD ++A ++L++ L+ +A
Sbjct: 227 FAFDERGRLVGLQKSGPAWLDLDKSTTAFNLAYSKYKELLEVLEKSLA 274
>gi|325180002|emb|CCA14404.1| exosome complex exonuclease RRP43 putative [Albugo laibachii Nc14]
Length = 293
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 15/228 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+ +T VI ++ +G P+ + +G + I + +P F GR EE +A +SS +
Sbjct: 67 LKNTSVITGIQLAVGTPAIDKQTEGDIVIQIHLTPLCSTRFNVGRACEEANA-VSSHISK 125
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + IDL+ L + +GK W++ ID I DGN+ + +I AL +P
Sbjct: 126 IIRRAR-----MIDLTQLSIEKGKSAWNVMIDVYCIDYDGNIFEVSLMSIMTALQKLRLP 180
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
+ V+ D + E+D SDEE V T+ V +H ++D T EEE SS
Sbjct: 181 ATRVSE---VDHKVEID-SDEESRPLIMQRVLCATSFAIVNEHVLIDPTSEEEGLASSTF 236
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANF----VSRQLMDKL 223
+I + + G+ K GG + P+++ + A V++QL++ L
Sbjct: 237 NIIYTTENELFGVYKPGGTLISPAILKKCLDTAKNRTKKVAKQLLESL 284
>gi|84490040|ref|YP_448272.1| exosome complex RNA-binding protein Rrp42 [Methanosphaera
stadtmanae DSM 3091]
gi|84373359|gb|ABC57629.1| putative exosome complex, exonuclease 2 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 265
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 12/225 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI VKA++ P P+ G + + A FE + + E+S +
Sbjct: 52 IGCTTVIVGVKAQMTTPFNNAPNSGIIITNTELLAIASRNFEYGPPNKFAVEISRVVDRA 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL L V+EG W L+ID ++ DGN++DA AL T IP+
Sbjct: 112 I-----RESPVVDLDKLCVIEGSKSWKLHIDMYIVDFDGNIMDAACLGAICALLTTKIPT 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
A+ E+ I +E ++ T+ K+ IVD + EE M S+VS
Sbjct: 167 -------ATSVNGEIVIDEENLTPLPIKNRSILCTVVKINNQLIVDPSKIEEILMDSSVS 219
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
G +C + K G L + + +A+ +++L +D+
Sbjct: 220 FGFREDGSLCALQKCGLNTLTHKEVTKAMKIASIRAKELFSIIDT 264
>gi|242082071|ref|XP_002445804.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
gi|241942154|gb|EES15299.1| hypothetical protein SORBIDRAFT_07g026060 [Sorghum bicolor]
Length = 306
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 114/242 (47%), Gaps = 11/242 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ASVK E+ P A PD+G VA+ P P E++ +S AL+
Sbjct: 70 LGDTAMLASVKLEVMSPPAEHPDEGSVAVEFHMPPICSPLVRPGRSAEVAPVISKALEDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG ++L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 130 LMS--SGM---LNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPL 184
Query: 121 VHVAAE------AASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
V V + +D + + ++ + E + +P+ T + D T EEES
Sbjct: 185 VSVGDDGRLFTVGGNDGKNKFELVNREKRKLTLCDIPLSLTCALHKDSILADPTSEEESI 244
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
+ + V++ ++ + + K GG + I + IS+A + L + L + A + D+
Sbjct: 245 IETYVTVVVDSSDRLVSLQKVGGAVTSMATIKECISLAKERRQSLREILIDSVKAMEVDQ 304
Query: 235 DE 236
E
Sbjct: 305 TE 306
>gi|326508906|dbj|BAJ86846.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 11/242 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++AS+K E+ P A PD+G VA+ P P E + +S AL+
Sbjct: 70 LGDTAMLASIKLEVMSPPAETPDQGSVAVEFHMPPICSPLVRPGRPAEAAPVISKALEDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG ++L L ++ GK W Y+D +++DG+L DA ++ AA ++ IP
Sbjct: 130 LMS--SGM---LNLKELCLISGKASWVAYLDVYCLNADGSLFDAALISVVAAFTHLEIPL 184
Query: 121 VHVAAE------AASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
V V + ++ + + ++ + E + +P T +VD T EEES
Sbjct: 185 VSVGDDGRVFTVGGNEGKTKYELVNREKRKLTLGDIPFPLTCALHKDSILVDPTAEEESI 244
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
+ ++V++ ++ G + + K GG + I I +A ++L + L I A + D+
Sbjct: 245 IETSVTVVLDSSGRLVSIQKPGGGVTSMAAIKACIGLAKERGQKLKEILTDSIEAMEVDQ 304
Query: 235 DE 236
E
Sbjct: 305 AE 306
>gi|257076445|ref|ZP_05570806.1| exosome complex RNA-binding protein Rrp42 [Ferroplasma acidarmanus
fer1]
Length = 260
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 21/199 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A +K E G P PD G +A+ ++ P A PTFE E + E S +
Sbjct: 56 IGKTKVVAGIKVEEGDPFEDSPDSGVMALNIELLPMAFPTFESGPPSEQAIEYSRVVDRG 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K +D S LV+ GK W +++D V++ DGN++DA A AL NT +P+
Sbjct: 116 IRESKM-----VDTSKLVIESGKRVWMIFVDIDVLNYDGNIIDAATLAAVTALKNTVVPA 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ + S + PV T+ K+G + D LEEE + ++
Sbjct: 171 SKIGQKDYS---------------LPINATPVSITMVKIGDEIVCDPDLEEEQVSNGRIT 215
Query: 181 ISINRQGHICGMIKRGGVG 199
++I +I M ++G +G
Sbjct: 216 VTIAEDHNIHAM-QKGDIG 233
>gi|156363851|ref|XP_001626253.1| predicted protein [Nematostella vectensis]
gi|156213123|gb|EDO34153.1| predicted protein [Nematostella vectensis]
Length = 276
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 11/201 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ V AE P+A P+KG + VD P P+F E + LS+ + +
Sbjct: 53 LGNTTVVCGVTAEFAEPAADVPNKGFIVPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDNL 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L +V+GK+ W LYID + + DGN+ DA A+ AAL NT + +
Sbjct: 113 ITNSQL-----IDLEDLCIVDGKLVWVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHT 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSAV 179
V + E + E S+ + + +PV T H D T EEE S V
Sbjct: 168 VTINEETETPEP-----SENKDIHLKLKSMPVAVTFGIFDDDHIYCDPTDEEERLASGKV 222
Query: 180 SISINRQGHICGMIKRGGVGL 200
S+ + + + K GG L
Sbjct: 223 SVVMTTNNKVVAVHKPGGPPL 243
>gi|379003147|ref|YP_005258819.1| RNase PH-related exoribonuclease [Pyrobaculum oguniense TE7]
gi|375158600|gb|AFA38212.1| RNase PH-related exoribonuclease [Pyrobaculum oguniense TE7]
Length = 276
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 18/188 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T VIA VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVIAGVKVGLGQPFPDAPDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D L V EG + L++D +I+ DGNL+DA A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLAV-EGGKAYVLWVDLYIINDDGNLVDAANLASVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P+V V E+ + ++D +++ L +TS VPV ++ K+ +D EEE +
Sbjct: 169 QLPAV-VKDESGA---VKLDRNNKSPLPLETSKVPVAVSVGKIANVLFLDPNFEEELSLD 224
Query: 177 SAVSISIN 184
V+ +I+
Sbjct: 225 GRVTFTIS 232
>gi|310789357|gb|EFQ24890.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 298
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V AE+ P +P +G I + SP A P FE E LS L+
Sbjct: 51 LGKTRVLAKVSAEVTVPYTDRPFEGIFQITSELSPMASPAFEVNRPTEAEVLLSRILEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G+ W + D V+S DGNL DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLIAGQKVWSVRADVHVLSHDGNLTDAACLAVIAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMSS 177
++ + P ++ E + P T + G +VDA EE +S
Sbjct: 166 TSNEGQSLTIFTP----AEREPVPLSWLHSPFCVTFSFFGDEGEITLVDANWIEEQLRTS 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
++++S+N+ G I + K GG ++ +L +VA S+ +D ++A
Sbjct: 222 SMTVSLNKHGEISQISKLGGTPIEAVTLLHCGNVALQKSKDFSTLVDEKLA 272
>gi|429850259|gb|ELA25551.1| 3 exoribonuclease [Colletotrichum gloeosporioides Nara gc5]
Length = 298
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ V AE+ P A +P +G I + SP A P FE E LS L+
Sbjct: 51 LGKTTILVKVSAEVTVPYADRPFEGIFQIVTELSPMASPAFEVNRPTEAEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ W + D V+S DGNL DA + AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLVAGQKVWSVRADVHVLSHDGNLTDAACLGVIAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMSS 177
EA + P ++ E + P T + G ++DA EE +S
Sbjct: 166 TSNEGEALTIFTP----AEREPVPLSWLHSPFCVTFSFYGDEGEITLIDANWLEEQLRAS 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
++++S+N+ G I + K GG ++ +L +VA ++ +D ++A
Sbjct: 222 SLTVSLNKHGEISQISKLGGTPVEAVTLLHCGNVALQKAKDFSSLVDEKLA 272
>gi|212721556|ref|NP_001131768.1| exosome complex exonuclease RRP43 [Zea mays]
gi|194692484|gb|ACF80326.1| unknown [Zea mays]
gi|195623954|gb|ACG33807.1| exosome complex exonuclease RRP43 [Zea mays]
gi|414869688|tpg|DAA48245.1| TPA: exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 11/242 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ASVK E+ P A PD+G VA+ P P +++ +S AL+
Sbjct: 70 LGDTAMLASVKLEVMSPPAEHPDEGSVAVEFHMPPICSPLVRPGRPTDVAPVISKALEDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + ++L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 130 L-----TSSGMLNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPL 184
Query: 121 VHVAAEA------ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
V V + +D + + ++ + E + +P+ T + D T EEES
Sbjct: 185 VSVGDDGRLFTVGGNDGKNKFELVNREKRKLTLGAIPLSLTCALHKDEILADPTSEEESI 244
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
+ + V++ ++ + + K GG + I + IS+A R L + L I A + D+
Sbjct: 245 IETYVTVVVDSSDRLVSLQKLGGAVTCMATIKECISLAKERRRSLREILLDSIKAMEVDQ 304
Query: 235 DE 236
E
Sbjct: 305 TE 306
>gi|255582593|ref|XP_002532079.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
gi|223528261|gb|EEF30313.1| exosome complex exonuclease rrp43, putative [Ricinus communis]
Length = 303
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 22/246 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A++K E+ PS+ PD+G +AI CSP P +S +LS
Sbjct: 67 IGSTTMMAAIKMEVMTPSSESPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVSKQLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + A IDL L +V GK W Y+D + +DG+L DA + AA +N
Sbjct: 127 IM---------SSAMIDLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALFSAVAAFTNL 177
Query: 117 GIPSVHVAAE----AASDE----QPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDAT 168
IP V + + SDE + E + ++E + +P T + + D T
Sbjct: 178 QIPIVSLNDDGKVVVVSDENEGGKREKEAVNKEKRKLTLRSLPFSLTCVLHKNYILADPT 237
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLD-PSVILDMISVANFVSRQLMDKLDSEI 227
EEES M + V++ ++ + K GG L S + D +++ ++L + LD +
Sbjct: 238 AEEESIMETLVTVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQNILDEAL 297
Query: 228 AAADAD 233
+ D
Sbjct: 298 SGMQID 303
>gi|374325947|ref|YP_005084147.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum sp. 1860]
gi|356641216|gb|AET31895.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum sp. 1860]
Length = 273
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 22/190 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDESAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D LVV EG + L+ID VI+ DGNL+DA A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLVV-EGGKAYILWIDLYVINDDGNLVDAANLASVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEV--DISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
+P+ A DE V D +++ L D + PV ++ K+G +D T EEE
Sbjct: 169 QLPT------AVKDEAGAVKLDRNNKLPLPVDVAKAPVAASVGKIGNVLFLDPTFEEELS 222
Query: 175 MSSAVSISIN 184
+ ++ + +
Sbjct: 223 LDGRITFTFS 232
>gi|384250786|gb|EIE24265.1| exoribonuclease PH component of the exosome [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 12/237 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+ + L P +P++G V V+ SP A P+F+ GR GE + E++ L+
Sbjct: 17 MGQTKVMTVITPTLTAPYEDRPNEGAVRFNVEYSPMASPSFQAGRPGEA-AIEVTRLLER 75
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
++ ID +L V+ G W L ID V+ + GNL DA AAL P
Sbjct: 76 AFRDSRA-----IDQEALCVLAGHRVWSLSIDVHVLDNGGNLADACMLCTLAALMAFRRP 130
Query: 120 SVHVAAEAASDEQPEVDI---SDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQ 174
VAA A + V + S E + +P+ + G+ +VD EE+
Sbjct: 131 DTEVAAGGAESGRARVTVLSPSAREPVPLSLHHLPLGISFAFFEDGELLVVDPDSTEEAA 190
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
+ +++ +N +C + K G+G+ + + ++ +AN + Q+MD L + + D
Sbjct: 191 AAGLMTVVVNTHSDVCTVRKTSGIGISMTQVHRVVRLANSRAGQVMDGLKAALQRHD 247
>gi|223945461|gb|ACN26814.1| unknown [Zea mays]
gi|413921676|gb|AFW61608.1| exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 11/242 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ASVK E+ PSA PD+G V++ P P E++ +S AL+
Sbjct: 70 VGDTAMLASVKLEVMSPSAEYPDEGSVSVEFHMPPICSPLVRPGRSAEVAPVISKALEDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ + ++L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 130 LMSSRM-----LNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVAAFTHLEIPL 184
Query: 121 VHVAAEAA------SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
V V + +D + + ++ + E + +P+ T + D T EEES
Sbjct: 185 VSVGDDGKLFTVGGNDGKNKFELVNREKRKLTLGDIPLSLTCALHKGSILTDPTSEEESI 244
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
+ + V++ ++ + + K GG + I + IS+A +L + L + A + D
Sbjct: 245 IETYVTVVVDSSDRLVSLQKVGGTVTSMATIKECISLAKERRLRLREILIDSVKAMEVDH 304
Query: 235 DE 236
E
Sbjct: 305 TE 306
>gi|221128137|ref|XP_002160444.1| PREDICTED: exosome complex component RRP45-like [Hydra
magnipapillata]
Length = 437
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 114/239 (47%), Gaps = 16/239 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A EL +P +P +G++ + VD SP A P+FE E++ ++ C
Sbjct: 52 LGETRVLAQTSCELVKPIGTRPTEGQLHLNVDLSPMASPSFETGRMTSQGLEINRLIERC 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + ID+ SL ++ G+ W + +D +V++ GN+LD A A+L++
Sbjct: 112 IKESRC-----IDVESLCLIAGEKVWSIRVDIVVLNDCGNILDCSCIAGIASLAHFK--- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
H E + +++ + + +P+ TT + G+ I+D +EES +S
Sbjct: 164 -HHDVTVTGTEVIIHNFKEKDPIPLNVHHMPISTTFGFIDDGEQMIIDPEEKEESILSGK 222
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
+ ++ N G +C GGV D IL +++ S ++ + + + + DED +
Sbjct: 223 LIMAFNIYGEVCCAQMSGGVSFDYEQILQCAKISSVKSSEITNIIKTAL-----DEDRT 276
>gi|332023404|gb|EGI63647.1| Exosome complex exonuclease RRP43 [Acromyrmex echinatior]
Length = 278
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 11/237 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + +KAEL P A PD G + V+ SP F E + LS +
Sbjct: 49 LGDTTAVCGIKAELAAPKADTPDHGYIVPNVELSPLCSSKFRPGPPSEQAQVLSKFIDII 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L A +DL L + + K+ W LY D L ++ +G+++DA A+ AAL +P
Sbjct: 109 L-----SNSAALDLKDLCICKSKLVWVLYCDILCLNYNGSVIDACTGALMAALKTLTLPE 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQMSSAV 179
V+ E A ++ + +F +P+ T+ K +V D T +EE S
Sbjct: 164 VNYTKETAL-----TIVNPKNRKKFIVRTLPISTSFAVFEKRLLVADPTDDEEDLSSGKF 218
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
SI ++ + IC + K GG+ + +++ + +A ++ + +++ I+ + +E
Sbjct: 219 SIVMDDEEKICYVHKPGGIPISQNLLSKGLEMAKTRAKLVRSVINAAISTLNVKNEE 275
>gi|356552650|ref|XP_003544676.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 299
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 23/242 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++ ++K E+ PS PD+G +AI CSP P +S +LS
Sbjct: 67 IGSTTMLTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + IDL L +V GK W Y+D + +DG L DA + AALS+
Sbjct: 127 ISSSRM---------IDLKELSLVGGKAAWMAYLDIYCLDADGALFDAALISAVAALSHL 177
Query: 117 GIPSV------HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLE 170
IP+V + + D Q V ++E + +P T + + D T E
Sbjct: 178 QIPAVAMNDDGKIVLVSGEDGQKPV---NKEKRKLTLRSIPFSLTCILHKNYILADPTAE 234
Query: 171 EESQMSSAVSISINRQGHICGMIKRGGVGL-DPSVILDMISVANFVSRQLMDKLDSEIAA 229
EES M + V+I ++ G + + K GG L S I D + + ++L LD E +A
Sbjct: 235 EESIMETHVTIVLDTSGQLISLYKPGGPALAYTSAIQDCVGLTGQRVKELKSYLDKENSA 294
Query: 230 AD 231
+
Sbjct: 295 ME 296
>gi|291229746|ref|XP_002734834.1| PREDICTED: exosome component 9-like [Saccoglossus kowalevskii]
Length = 421
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 21/197 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V E+ P +P +G + V+ SP A P FE E E+ L+
Sbjct: 80 LGDTRVLCQVSCEIIEPRQNRPTEGGLYFNVELSPMASPLFEPGRQSEFGIEIIRFLEKT 139
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ID SL +V G+ W++ ID V++ DGN++D + A ALS+ P
Sbjct: 140 VRDSRA-----IDTESLCIVAGEKVWEIRIDIHVLNHDGNIMDCVTMAAVTALSHFRRPD 194
Query: 121 VHVAAE-----AASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEES 173
V V E +A+D P + +PV T GK+ +VD T EE
Sbjct: 195 VSVVGEDVQVHSAADRDP---------VSLSVHHLPVSVTFAYFDEGKYLLVDPTEREEC 245
Query: 174 QMSSAVSISINRQGHIC 190
M ++ +S+N +C
Sbjct: 246 VMDGSMILSMNIHRELC 262
>gi|126327460|ref|XP_001368047.1| PREDICTED: exosome complex component RRP43-like [Monodelphis
domestica]
Length = 276
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 108/230 (46%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VK E P +KG + VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKGEFAAPPVDSLNKGYIVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISHGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
+V + E EV++ + L T P+ T+ IVD T EEE +
Sbjct: 167 AVIINEETG---LAEVNLKKKSHLNIRTH--PIATSFAIFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>gi|18313177|ref|NP_559844.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum aerophilum
str. IM2]
gi|29336869|sp|Q8ZVN0.1|ECX2_PYRAE RecName: Full=Probable exosome complex exonuclease 2
gi|18160691|gb|AAL64026.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 274
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 18/188 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D L V EG + L+ID VI+ DGNL+D A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLAV-EGGKAYVLWIDLYVINDDGNLIDVANLASVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P V V EA ++D +++ L D S P+ ++ K+G +D T EEE +
Sbjct: 169 QLPVV-VKDEAGV---VKLDRNNKAPLPVDISKAPIAVSVGKIGNVLFLDPTFEEELSLD 224
Query: 177 SAVSISIN 184
++ + +
Sbjct: 225 GRITFTFS 232
>gi|449499646|ref|XP_002187964.2| PREDICTED: exosome complex component RRP45 [Taeniopygia guttata]
Length = 395
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 11/208 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P +G + ++ SP A P E EL L+ L+ C
Sbjct: 4 LGRTRVLAQVSCELVPPKPSRPTEGVLFFNLELSPMAAPGLEPGRQSELVVSLNRLLERC 63
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K I+ SL VV G+ W + +D +++ DGN+ DA A AL + P
Sbjct: 64 LRDSKC-----IETESLCVVAGEKVWQIRLDMHLLNHDGNITDAASIAGIVALCHFRRPD 118
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + E + + + +P+ + G + +VD T EE M
Sbjct: 119 VSVQGEEVTVYTAE----ERDPVPLSIHHMPICVSFAFFHQGTYLLVDPTEREERVMDGL 174
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVIL 206
+ I++N+ IC + G V L P IL
Sbjct: 175 LVIAMNKHHEICTIQSSGVVMLLPDQIL 202
>gi|410915784|ref|XP_003971367.1| PREDICTED: exosome complex component RRP43-like [Takifugu rubripes]
Length = 276
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 20/237 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T +I +KAEL P+ P KG + VD P F G GE Q
Sbjct: 53 VGNTTIICGIKAELATPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGE--------PAQA 104
Query: 60 C--LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
C + + I L V GK+CW LY D + + DGNL DA A+ AAL NT
Sbjct: 105 CSQFIADLIESSEIIQTDDLCVERGKLCWVLYCDLMCLDYDGNLRDACVIALLAALKNTQ 164
Query: 118 IPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMS 176
+P ++ E P VD+ L+ PV ++ + IVD T EEE+ +
Sbjct: 165 LPEAVISTET---HLPVVDLEKRHGLK--VCKHPVASSFCIFDESTLIVDPTDEEENLST 219
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQ---LMDKLDSEIAAA 230
+ +++ +C + K GG+ L + + I+ A ++ L DK+ S + +
Sbjct: 220 ARITVVTEEGDRLCAVHKPGGMSLSGQKLQECINRATVRQKEIQKLTDKVLSSVKTS 276
>gi|407461958|ref|YP_006773275.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045580|gb|AFS80333.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus koreensis AR1]
Length = 272
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 22/228 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFE-GRGGEELSAELSS 55
+G T+V+ VK + RP PD G +F+ C+ P + PT E G G E+ EL+
Sbjct: 54 LGDTEVVCGVKIQPDRPF---PDTGDKGLFI-CTAELLPLSHPTVETGPPGPEV-IELAR 108
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
+ + +D+S LV+ + K ++ D +V+ DGNL DA A AAL +
Sbjct: 109 VVDRGIRESHM-----VDVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYATTAALLS 163
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
+ P + +A + + + E Q + +PV T+ K+GKH IVD +E M
Sbjct: 164 SKSPKWNWVNDAPA-------LVEGEDTQVPITTIPVSVTMAKIGKHIIVDPNGDEWESM 216
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ ++I+ + G+IC + K G G I+ ++ V ++ +KL
Sbjct: 217 DARITITSDSDGNICALQKGGDDGFTQEEIVQCGEISVRVGAKIREKL 264
>gi|351703822|gb|EHB06741.1| Exosome complex exonuclease RRP45 [Heterocephalus glaber]
Length = 462
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDIHLLNHDGNIIDAASIAAVVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVALSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|332027278|gb|EGI67362.1| Exosome complex exonuclease RRP45 [Acromyrmex echinatior]
Length = 390
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 16/196 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T +A V ++ +P A +P++G + I V+ +P A FEG E + ++ L+ C
Sbjct: 50 LGHTKAVAQVSCDIQQPKASRPNEGMIRINVELAPLAAQHFEGGRQSEAAILINRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL +V K W+L ID +I+ DGNL+D A AAL + P
Sbjct: 110 FKDSKC-----VDLESLCIVADKKVWNLRIDINIINHDGNLVDCASIATLAALMHFHRPD 164
Query: 121 VHVAAEAASDEQPEVDI---SDEEFLQFDTSGVPV-ITTLTKVGKHYIVDATLEEESQMS 176
V E E+ I S+++FL PV I+ +T + I+D T EE
Sbjct: 165 VTSTGE-------EIIIHPASEKDFLPLTLFHYPVCISFITFKSGNTIMDPTYIEEKVGV 217
Query: 177 SAVSISINRQGHICGM 192
+ +++ +N +C +
Sbjct: 218 AELTLGVNSYRELCSL 233
>gi|347524282|ref|YP_004781852.1| 3' exoribonuclease [Pyrolobus fumarii 1A]
gi|343461164|gb|AEM39600.1| 3' exoribonuclease [Pyrolobus fumarii 1A]
Length = 327
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 11/192 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK ++ +P PD+ + + + P A P FE +E + EL+ +
Sbjct: 58 LGNTMVLAGVKMDITQPFPDTPDEAVLVVHAEFVPLASPVFEPGPPDENAIELARVVDRA 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ A L LV+ GK W +Y+D V++ DGNLLDA A AAL T +P+
Sbjct: 118 LREIRAVA-----LDRLVLEPGKAVWRIYVDIYVLNHDGNLLDASMLASMAALMATRVPA 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V E + E+ L + V V T+ K+G +VD + +EE ++
Sbjct: 173 VRRTGEGFAIERGRYT----GLLPINNRVVTV--TVAKIGSRMVVDPSFDEELVADVRLA 226
Query: 181 ISINRQGHICGM 192
++++ I G+
Sbjct: 227 VAVSDDNRIAGL 238
>gi|336477102|ref|YP_004616243.1| 3' exoribonuclease [Methanosalsum zhilinae DSM 4017]
gi|335930483|gb|AEH61024.1| 3' exoribonuclease [Methanosalsum zhilinae DSM 4017]
Length = 255
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 19/212 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T +IA +K + G P PD+G + ++ +P A P FE E + E+S +
Sbjct: 48 FGETQLIAGIKLQTGTPFPDSPDEGVIITSMELNPIASPFFEPGPPNENAVEMSRVVDRG 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SG IDL L + EG+ W ++ID V++ GN+LDA AAL IP
Sbjct: 108 I--RESGT---IDLKKLCITEGEEVWMVFIDIHVLNDGGNILDAASLGAIAALMTAKIPR 162
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ ++ P +PV +L + +VD T++EE+ + ++
Sbjct: 163 ---ETKGYGEDIP-----------VPVREMPVAVSLVDIEGQLMVDPTIDEETICDTKLT 208
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
I N+ G IC M K G L + + + A
Sbjct: 209 IISNQDGSICAMQKSGNGALSTDQVFEAVETA 240
>gi|198401795|gb|ACH87550.1| exosome component 9 [Platynereis dumerilii]
Length = 530
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 11/192 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A E+ P +P +G V + V+ SP A P FE + EL+ L+ C
Sbjct: 145 LGKTIVMAQTSCEVTTPKQTRPSEGNVFVNVELSPMAAPHFEAGRQSDAGVELTRILERC 204
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +D SL ++ G W + +D V++ +GNL+DA A ++L + P
Sbjct: 205 IKESRC-----VDTESLCIMSGVKVWTIRVDVHVLNHNGNLIDAASIAAISSLVHFRRPD 259
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSSA 178
V V+ E + + D + + +P+ T G + ++D T +EE+ M
Sbjct: 260 VSVSGEDVTIH----SLEDRDPIPLSVHHMPICVTCAFYHKGTYLLIDPTDKEENVMDGK 315
Query: 179 VSISINRQGHIC 190
V + +N+ IC
Sbjct: 316 VIVGMNKHREIC 327
>gi|396479694|ref|XP_003840816.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Leptosphaeria maculans JN3]
gi|312217389|emb|CBX97337.1| similar to exosome complex endonuclease 2/ribosomal RNA processing
protein [Leptosphaeria maculans JN3]
Length = 291
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 10/213 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA + ++ P + G I + SP A P FE + LS L+
Sbjct: 51 LGKTRVIARISVDVTTPLPERKFDGIFQIVSEFSPMASPAFEIGRPTDAEVILSRILEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL ++ G C+ L D VI DG L+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCIIAGLKCFALRADVHVIDHDGGLIDASCIAVMAALQHFRRPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAV 179
V V E A+ + + + + + P+ T + ++VDA L EE V
Sbjct: 166 VVVEGEKAT----VLSVRERDPIPLSILHQPLCVTFSYFEDEIFLVDANLAEERVRQGEV 221
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+++N+ G +C + K GG ++P +L+ S+A
Sbjct: 222 ILTMNKHGELCQIAKYGGATINPLALLNCTSIA 254
>gi|50546251|ref|XP_500645.1| YALI0B08514p [Yarrowia lipolytica]
gi|49646511|emb|CAG82887.1| YALI0B08514p [Yarrowia lipolytica CLIB122]
Length = 299
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 20/223 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+ + AE+ +P+ +P +G + D A P FE E +S ++
Sbjct: 46 MGKTKVVVRISAEITKPNERRPFEGIFVVHTDIGSMASPIFENNHQSEQEIMISQVVEKA 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +DL SL +V GK CW++ D + DG L+DA AA+ A L + P
Sbjct: 106 V--RRSGA---LDLESLCIVAGKKCWEIRADVHYLDFDGGLVDATCAAVMAGLYHFKKPD 160
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL----------TKVGK-HYIVDATL 169
V V A + D+ + + +PV T +V K ++D T
Sbjct: 161 VDVDGGAVT----VCDMEERHPVALSVLHLPVSVTYGLFELKNDETNEVEKVECVLDCTA 216
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
E ++ ++I+IN+ IC + K GV ++ I+++ A
Sbjct: 217 IERQVQNAEITITINKNRDICQISKPSGVSIEGYRIVELCEKA 259
>gi|198419225|ref|XP_002123693.1| PREDICTED: similar to Exosome component 9 [Ciona intestinalis]
Length = 385
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 11/229 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A V AEL RP + +G + + V+ S A P + + AEL L+
Sbjct: 52 MGGTKVMAQVAAELCRPRESRQSEGSLGVQVEMSMMAAPHLDPAKPGDSGAELQQMLERS 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ ++ +DL L V G+ W++ I V+S DGNLLD A +L + P
Sbjct: 112 IVMSQA-----VDLEELCVRVGEKSWNIQIFVHVLSHDGNLLDCATIASMTSLKHFKRPD 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + + E D+ + VP + + G +VD TL EE M
Sbjct: 167 VSVVGQEVTIHKFE----DKHPIPLTLHHVPFCVSFAFFQGGGLMVVDPTLNEEKVMDGK 222
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ +++N+ +C + G + L IL+ ++A+ ++ D +++ +
Sbjct: 223 LMVAVNKHKEVCCLQMNGQLQLSKEQILNCTNIASTKAQTFYDIMETSL 271
>gi|254169471|ref|ZP_04876288.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
gi|197621577|gb|EDY34175.1| 3' exoribonuclease family, domain 2 [Aciduliprofundum boonei T469]
Length = 210
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 21/192 (10%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLL 62
T V+ VK E G P P+ G + + +P A PTFE G GEE + EL+ + +
Sbjct: 1 TRVLVGVKIEPGTPFPDTPNMGILTTNAELAPLASPTFEPGPPGEE-AIELARVVDRGIR 59
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
G + IDL LV+ EG+ W ++ID V+ DGNL DA G AAL+N +P+
Sbjct: 60 EGHA-----IDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNAIVPASR 114
Query: 123 VAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSIS 182
D+ ++ + PV T K+G + D L+EES S+ ++++
Sbjct: 115 ------------YDLGED--FKLPVQHYPVPVTFAKIGDWIVADPNLDEESIASARLTVA 160
Query: 183 INRQGHICGMIK 194
N +G I M K
Sbjct: 161 TNEEGKINAMQK 172
>gi|302903929|ref|XP_003048964.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729898|gb|EEU43251.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 293
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T V+A V AE+ P + +P G I + SP P++E LS L+
Sbjct: 51 YGKTRVLAKVTAEVTVPYSDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G+ CW + +D V++ DGNL DA A+ AAL + P
Sbjct: 111 V--RRSGA---LDTESLCLIAGQKCWSIRVDLHVLTHDGNLTDAACLAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK---HYIVDATLEEESQMSS 177
+ E + P ++ E + P T + G+ +VDA EE +
Sbjct: 166 SSIEGENLTVYTP----AEREPVPLSWLHSPFCVTYSFFGEEGNQVLVDANWLEEQLRVA 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ S+N+ G IC + K GG LD + + A S++L D +D ++A
Sbjct: 222 YCTYSLNKHGEICQIAKLGGTSLDAPLFIQCAQGALNRSKELSDLVDRKLA 272
>gi|307187131|gb|EFN72375.1| Exosome complex exonuclease RRP43 [Camponotus floridanus]
Length = 284
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 108/238 (45%), Gaps = 11/238 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + +KAEL P A PD G + V+ SP P F E + LS +
Sbjct: 53 LGDTSAVCGIKAELATPKADIPDHGYIVPNVELSPLCSPKFRPGPPSEQAQVLSKLIDIV 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + +DL L + + K+ W LY D L ++ +G+++DA A+ AAL +P
Sbjct: 113 LSNSR-----ALDLKDLCICKNKLVWVLYCDILCLNYNGSVIDACIGAMIAALKTLTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAV 179
++ +E + E F +PV + K +VD + +EE S+
Sbjct: 168 INYNSETGV-----IVTHPENRKAFTVRTLPVSASFAIFEKQLLLVDPSDDEEDMSSTRF 222
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
SI ++ + IC + K GG+ + +++ + + ++ + +++ I+ + + E+
Sbjct: 223 SIVMDDEEEICYIHKPGGIPISQNLLCKGLEMTKVRAKSIRSVINAAISTLNVNNIET 280
>gi|452211131|ref|YP_007491245.1| Exosome complex exonuclease 2 [Methanosarcina mazei Tuc01]
gi|452101033|gb|AGF97973.1| Exosome complex exonuclease 2 [Methanosarcina mazei Tuc01]
Length = 263
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 19/212 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 52 LGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W ++ID ++++DGN++DA A AAL T +P
Sbjct: 112 I--RESGA---IDIKKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVP- 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+EQ + E + +PV TL K+G +VD +L+EE+ + ++
Sbjct: 166 ---------NEQQGLG----ENVPLAMKEMPVGITLAKIGSKLMVDPSLDEEAVCETKLT 212
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
I + G + GM K G V L + + + I +A
Sbjct: 213 IVSSSDGSVAGMQKMGPVPLTEAELFEAIDMA 244
>gi|408397088|gb|EKJ76238.1| hypothetical protein FPSE_03493 [Fusarium pseudograminearum CS3096]
Length = 293
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 20/235 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T V+A V AE+ P +P G I + SP P++E LS L+
Sbjct: 51 YGKTRVLAKVSAEVTVPYTDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ GK CW + +D V++ DGNL DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLIAGKKCWSIRVDLHVLAHDGNLTDAACVAVIAALRHFRKPD 165
Query: 121 VHVAAEA----ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK---HYIVDATLEEES 173
+ E S E+ V +S +L P T + G+ +VD EE
Sbjct: 166 SSIEGETLTIYTSAEREPVPLS---WLH-----SPFCVTYSFYGEDGSQVLVDTNWLEEK 217
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
S + S+N+ G I + K GG LD + + A S+ L + +D+++A
Sbjct: 218 MRISHCTYSLNKHGEISQISKLGGKALDAPLFIQCAQGALNRSKDLSNLVDNKLA 272
>gi|21228726|ref|NP_634648.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina mazei
Go1]
gi|29336794|sp|Q8PTT7.1|ECX2_METMA RecName: Full=Probable exosome complex exonuclease 2
gi|20907235|gb|AAM32320.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 266
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 19/212 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 55 LGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W ++ID ++++DGN++DA A AAL T +P
Sbjct: 115 I--RESGA---IDIKKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVP- 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+EQ + E + +PV TL K+G +VD +L+EE+ + ++
Sbjct: 169 ---------NEQQGLG----ENVPLAMKEMPVGITLAKIGSKLMVDPSLDEEAVCETKLT 215
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
I + G + GM K G V L + + + I +A
Sbjct: 216 IVSSSDGSVAGMQKMGPVPLTEAELFEAIDMA 247
>gi|156230391|gb|AAI52249.1| MGC174638 protein [Danio rerio]
Length = 277
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTF-EGRGGEELSAELSSALQH 59
+G+T VI +KAEL P + +KG + VD P F G GE+ A A Q
Sbjct: 53 IGNTTVICGIKAELAVPPSEAQNKGYLVPNVDLPPLCSSRFGAGPPGEQAQA----ASQ- 107
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + I+ L + + K+CW LY D + + DGNLLDA + AAL +P
Sbjct: 108 -FIADVIESSDLINSEELCIEKAKLCWVLYCDIMCLDYDGNLLDACITVLLAALKTAQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E + EVDI + L+ + PV ++ IVD T EEES ++
Sbjct: 167 EVTINKET---DLAEVDIEKKRRLKINRH--PVGSSFAVFDDSIIIVDPTAEEESLSTAL 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA---NFVSRQLMDKL 223
+++ + + +C + K GG L + I+ A N R+L+DK+
Sbjct: 222 MTVVTDEEDRLCAVHKPGGTSLSGEKLQHCINRAITRNKEIRKLLDKV 269
>gi|118576718|ref|YP_876461.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
gi|118195239|gb|ABK78157.1| RNase PH-related exoribonuclease [Cenarchaeum symbiosum A]
Length = 270
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 96/204 (47%), Gaps = 21/204 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFEGRGGEELSAELSSA 56
+G TDV+ VK + RP PD G IF+ C+ P A P E EL+
Sbjct: 54 LGRTDVVTGVKVQPDRPF---PDVGDRGIFI-CTAEILPLAHPDVETGPPSPAVIELARV 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + +SG +DLS LV+++ K ++ D VI DGNL DA A AA+
Sbjct: 110 VDRGIR--ESGM---VDLSKLVLLKDKSVIGIFADSSVIDVDGNLFDACSYAATAAILTA 164
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P + DE P V I E + T +PV T+ K+ H +VD +E + M
Sbjct: 165 KLPKWEI-----QDEAP-VRIEGETPVPVTT--IPVSVTMAKINGHILVDPNQDEWAVMD 216
Query: 177 SAVSISINRQGHICGMIKRGGVGL 200
+ ++I+ N G+IC + K G G
Sbjct: 217 ARITITTNSDGNICALQKGGNSGF 240
>gi|52550471|gb|AAU84320.1| 3'-5' exoribonuclease [uncultured archaeon GZfos9D1]
Length = 257
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+ VK ELG P PDKG + + P A P FE E S +L+ +
Sbjct: 53 IGDTEVLVGVKVELGTPFPDTPDKGVIITNAELVPLASPKFESGPPNENSIQLARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G ++ IDL L + +G+ W ++ID V+ +GNL DA A+L N IP+
Sbjct: 113 IRGSET-----IDLDKLCIEKGEKVWMVFIDIHVLDDNGNLADAAALGAIASLLNLRIPN 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
++ E L + PV T ++ + +VD + +E + +S+V+
Sbjct: 168 ERYG------------LTGENTLPMRDT--PVAVTTVEIEGNILVDPSFDEGNAAASSVT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ N G + GM K G GL + I +M+ +
Sbjct: 214 VISNADGTLSGMQKSGSGGLKEAQIAEMVEIG 245
>gi|410932317|ref|XP_003979540.1| PREDICTED: exosome complex component RRP45-like [Takifugu rubripes]
Length = 312
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V EL P +P++G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGETRVMAQVSCELVAPKESRPNEGILFFNIELSPMASPAFEAGRQSELSVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGNL+DA A ALS+ P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVHLLNHDGNLMDAASIAAITALSHFRRPD 164
Query: 121 V 121
V
Sbjct: 165 V 165
>gi|226494746|ref|NP_001148711.1| exosome complex exonuclease RRP43 [Zea mays]
gi|195621578|gb|ACG32619.1| exosome complex exonuclease RRP43 [Zea mays]
Length = 306
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 11/242 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ASVK E+ PSA PD+G V++ P P E++ +S AL+
Sbjct: 70 VGDTAMLASVKLEVMSPSAEYPDEGSVSVEFHMPPICSPLVRPGRSAEVAPVISKALEDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ + ++L L ++ GK W Y+D +++DG+L DA + +A ++ IP
Sbjct: 130 LMSSRM-----LNLKDLCLITGKASWLAYLDIYCLNADGSLFDAALISAVSAFTHLEIPL 184
Query: 121 VHVAAEAA------SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
V V + +D + + ++ + E + +P+ T + D T EEES
Sbjct: 185 VSVGDDGKLFTVGGNDGKNKFELVNREKRKLTLGDIPLSLTCALHKGCILTDPTSEEESI 244
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
+ + V++ ++ + + K GG + I + IS+A +L + L + A + D
Sbjct: 245 IETYVTVVVDSSDRLVSLQKVGGTVTSMATIKECISLAKERRLRLREILIDSVKAMEVDH 304
Query: 235 DE 236
E
Sbjct: 305 TE 306
>gi|296195656|ref|XP_002745482.1| PREDICTED: exosome complex component RRP45 [Callithrix jacchus]
Length = 440
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASVAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|401406019|ref|XP_003882459.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
gi|325116874|emb|CBZ52427.1| putative exosome complex exonuclease [Neospora caninum Liverpool]
Length = 294
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 34/231 (14%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPT------AEPTFEGRGGEELSAELSSALQH 59
V+ V +L RP+ PD+G+V + VDCS F+ G E S+ S++LQ
Sbjct: 71 VLCGVSMQLARPTN-APDEGEVFVTVDCSAALGVDGARGAAFDSVGIGEGSS--STSLQA 127
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+G + +D L +V GK+ W +++D +V+ + G LLDA+ ++ AAL T
Sbjct: 128 -LVGDM--VLSSVDKKKLCLVPGKLMWKVFVDCMVLKAGGCLLDAVSLSVHAALRTT--- 181
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
VA E F VP+I T+ ++ Y+ D T EES + +
Sbjct: 182 -TEVAGEP-----------------FPAEDVPIIVTVGEIANRYVWDMTSNEESACTGRL 223
Query: 180 SISINRQGHIC-GMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
++++ + H C G+ K G +D S + ++ + V R++ ++LD ++A+
Sbjct: 224 LVAVSPREHKCVGIQKLGASLVDISTLPTVMVNSQRVCREIFERLDRQVAS 274
>gi|118486664|gb|ABK95169.1| unknown [Populus trichocarpa]
Length = 403
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 16/226 (7%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGA 68
V +L +P + ++G + IF + SP A+P+FE GR GE + EL + L ++
Sbjct: 4 VTGQLVQPYQDRRNEGMLLIFTEFSPMADPSFEPGRPGES-AVELGRIVDRGLRESRA-- 60
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
+D SL V+ GK+ W + ID ++ + GNL+DA A AAL P +
Sbjct: 61 ---VDTESLCVLSGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGG--- 114
Query: 129 SDEQPEVDI---SDEEFLQFDTSGVPVITTLTKVGKH--YIVDATLEEESQMSSAVSISI 183
D+ EV + + E L +P+ T +G +VD T EE+ M +++++
Sbjct: 115 -DDGQEVTVHPPEEREPLPLIVHHLPIAITFAFLGSEGKMVVDPTHSEEAVMGGRMTVTV 173
Query: 184 NRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
N G IC + K GG G+ SVI+ + +A+ + + K+++ + A
Sbjct: 174 NAIGDICSIQKAGGEGVPQSVIMHCLQLASMSAESITKKINNAVEA 219
>gi|385806381|ref|YP_005842779.1| exosome complex RNA-binding protein Rrp42 [Fervidicoccus fontis
Kam940]
gi|383796244|gb|AFH43327.1| exosome complex RNA-binding protein Rrp42 [Fervidicoccus fontis
Kam940]
Length = 274
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 10/212 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK E G P P++G + + + P A P FE +E + EL+ +
Sbjct: 58 LGDTLVLVGVKVEPGAPYPDNPNEGVLMVNAEFVPLASPAFEPGPPDENAYELARIIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K+ I L L +V G+ ++ D V++ GNL+DA A AL NT IP
Sbjct: 118 YRESKA-----IGLGELALVPGQKVLVVWNDIYVLNHSGNLIDASAIASLVALMNTRIP- 171
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+ A+ + + E +E + + T+ K+G +Y+ D T EEE + +S
Sbjct: 172 VYEEADGGNFVKKE----NEYKGNLNVKKKIITATIAKIGNYYLADPTDEEEYVSDARLS 227
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+S G I GM K G LD + I MI +A
Sbjct: 228 VSFTEDGIIAGMQKMGIGYLDENDINQMIDLA 259
>gi|149411987|ref|XP_001513016.1| PREDICTED: exosome complex component RRP45-like [Ornithorhynchus
anatinus]
Length = 439
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMASPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D SL V+ G+ W + +D V++ DGN+LDA A AL + P
Sbjct: 110 LRNSKC-----VDTESLCVIAGEKVWQIRVDLHVLNHDGNILDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + G + +VD + EE M
Sbjct: 165 VSVQGDEITLYTPE----ERDPVPLSIHHMPIYVSFAFFLQGAYLLVDPSEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GGV L
Sbjct: 221 MVIAMNKHREICTIQSSGGVML 242
>gi|322799219|gb|EFZ20634.1| hypothetical protein SINV_00940 [Solenopsis invicta]
Length = 384
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 16/196 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V ++ +P A +P++G + I V+ +P A FE E + +S L+ C
Sbjct: 50 LGHTRVVTQVSCDIQQPKASRPNEGTIRINVELAPLAAQHFESGRPSEAAILISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL +V K W+L ID VI+ DGNL+D A AAL + P
Sbjct: 110 FKDSKC-----VDLESLCIVADKKVWNLRIDVNVINHDGNLIDCASVATLAALIHFHRPD 164
Query: 121 VHVAAEAASDEQPEVDI---SDEEFLQFDTSGVPV-ITTLTKVGKHYIVDATLEEESQMS 176
V E EV I S+++FL P+ I+ +T + ++D T EE
Sbjct: 165 VTSTGE-------EVIIHPASEKDFLPLTLFHYPICISFITFQSGNTVMDPTYLEERVGV 217
Query: 177 SAVSISINRQGHICGM 192
+ +++ +N +C +
Sbjct: 218 AELTLGMNSYRELCSL 233
>gi|452985011|gb|EME84768.1| hypothetical protein MYCFIDRAFT_163550 [Pseudocercospora fijiensis
CIRAD86]
Length = 304
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 12/225 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A + A + +P + G I + SP A P FE ++ LS L+
Sbjct: 51 IGKTRVLAKISATVVQPYEDRKFDGVFTISTELSPIASPAFEVGRQDQTEVLLSRILEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + D ++ DGNL+DA AA+ AA+ + P
Sbjct: 111 I--RRSGA---LDTESLCIVAGQKCWHVRADIHILDHDGNLVDAACAALVAAIMHFRRPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V V E + + + E ++ P T + G+ + DATL EE
Sbjct: 166 VEVHGEDVT----VFGLREREPVKLQMQHQPFCVTFSYYDAGEIMLQDATLLEEQCREGE 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
V +SINR G +C + K GG +D +L + A +++DKL
Sbjct: 222 VVVSINRFGEVCQIAKYGGTPVDGLSVLTCTNQA-LEKAKMLDKL 265
>gi|374724588|gb|EHR76668.1| exosome complex component RRP42 [uncultured marine group II
euryarchaeote]
Length = 261
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 19/221 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V A VK EL P +P +G + + P A +E S EL +
Sbjct: 52 MGGTIVYAGVKFELRTPWPDRPAQGSLMCGAELRPVAHRKYEPGPPSPQSIELGRVVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SG ID+ SL +V G+ W + ID V+S GN+ DA G A AAL +P+
Sbjct: 112 IR--ESGC---IDMESLCIVPGEKVWGVMIDIHVLSDGGNIFDACGLAAIAALRTAVVPA 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
D+ ++ L+ G P++ + T+VG Y+ D + EEE +
Sbjct: 167 ------------QRFDVGEDYTLK--VKGTPIMASFTRVGGRYVYDPSEEEELGGDERIH 212
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
I++ +GH+ + K P+ ++ VA+ +L +
Sbjct: 213 ITLGDEGHLHSLQKGLRGVFTPAEFAEIFEVAHLRCTELRE 253
>gi|326918964|ref|XP_003205754.1| PREDICTED: exosome complex exonuclease RRP45-like, partial
[Meleagris gallopavo]
Length = 403
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ SP A P FE EL +++ ++ C
Sbjct: 13 LGKTRVLGQVSCELVPPKPNRATEGILFCNLELSPMAAPGFEPGRQSELLVKVNRLIERC 72
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 73 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAGIVALCHFRRPD 127
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 128 VSVQGKEVTVYSPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 183
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 184 LVIAMNKHREICTIQSSGGIML 205
>gi|327287178|ref|XP_003228306.1| PREDICTED: exosome complex exonuclease RRP42-like [Anolis
carolinensis]
Length = 148
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGGEEL E+++ L
Sbjct: 53 LGHTDILVGVKAEMGVPKLDRPNEGFLEFFVDCSANATPEFEGRGGEELGTEIANTLYRI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGL 93
S +DL L + + CW LY+D L
Sbjct: 113 FDNESS-----VDLKLLCISPREHCWVLYVDVL 140
>gi|148230376|ref|NP_001088781.1| uncharacterized protein LOC496046 [Xenopus laevis]
gi|56269196|gb|AAH87445.1| LOC496046 protein [Xenopus laevis]
Length = 276
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 25/241 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+ V+ VKAE P A P+KG V VD SP F G GEE A+++S
Sbjct: 53 LGNCTVLCGVKAEFAAPPADAPNKGYVVPNVDLSPLCSSQFRPGPPGEE--AQVASQFM- 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVE------GKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
ID S +++ E GK+ W LY D + + DGNLLD A+ AAL
Sbjct: 110 ---------ADVIDNSQMLLKEDLCIRHGKLAWVLYCDLICLDYDGNLLDTCTCALVAAL 160
Query: 114 SNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEE 172
N +PSV + E EV++ + L+ P+ T+ +++ D T EEE
Sbjct: 161 QNVRLPSVKINEETG---LAEVNLKTKCALKILKH--PIATSFAVFDDKFLLADPTGEEE 215
Query: 173 SQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA 232
S +++ + +C K GG L + + IS A +++ L +A+A
Sbjct: 216 SLARGLLTVVTDEDERLCATQKPGGSSLSAEKLQECISRAITRHKEVTTLLQEALASAKP 275
Query: 233 D 233
+
Sbjct: 276 E 276
>gi|225684062|gb|EEH22346.1| exosome component 9 [Paracoccidioides brasiliensis Pb03]
Length = 295
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 14/215 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + G + V+ + A P F+ E+ +L+ L
Sbjct: 51 LGKTSVVVRISAEVTKPHPERENDGIFTVVVELNDMASPAFKTGWQSEMETQLARILDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D VI SDG L+D+ AI AL + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V + PE + + + +P+ TT G+ ++DA +EE+
Sbjct: 166 AIVREGRVTVFSPEERVPS----PLNLTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSEGN 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
+ I++N+ G + IK G DP L MIS +N
Sbjct: 222 LIIALNKTGELALYIKSDGTPADP---LSMISCSN 253
>gi|77797833|ref|NP_001030000.1| exosome complex exonuclease RRP45 [Gallus gallus]
gi|50593178|gb|AAT79383.1| polymyositis/scleroderma autoantigen 1 [Gallus gallus]
Length = 440
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ SP A P FE EL +++ ++ C
Sbjct: 50 LGKTRVLGQVSCELVPPKPNRATEGILFCNLELSPMAAPGFEPGRQSELLVKVNRLIERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIVDAASIAGIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGKEVTVYSPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTIQSSGGIML 242
>gi|392576624|gb|EIW69754.1| hypothetical protein TREMEDRAFT_23063, partial [Tremella
mesenterica DSM 1558]
Length = 236
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 20/190 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAI-FVD----CSPTAEPTFEGRGGEELSAELSS 55
+GST V+ +KAE+ P+ PDKG + + VD CSP +P + LS L
Sbjct: 58 LGSTTVVCGIKAEIAEPTTSSPDKGYLIVPNVDLPALCSPRYKPGPPSDEAQVLSVWLYD 117
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
L + +DLSSL +V GK W LYID + I+ DGN DA A+ AAL N
Sbjct: 118 LLI---------SSHVVDLSSLCIVPGKAVWALYIDVVCINYDGNAFDATVLAVMAALRN 168
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK-HYIVDATLEEESQ 174
T + H A +DE +V++ E +P+ + + H + D T E
Sbjct: 169 TKL---HGARY--NDETGKVNLIRGEKYSLKLGRIPLAASFGIFNETHLLPDPTSFESPH 223
Query: 175 MSSAVSISIN 184
+S+ +SI ++
Sbjct: 224 LSTTISICLD 233
>gi|307180205|gb|EFN68238.1| Exosome complex exonuclease RRP45 [Camponotus floridanus]
Length = 387
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 16/196 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T IA V ++ +P +P++G + I V+ +P A FE E + +S L+ C
Sbjct: 50 LGHTKAIAQVSCDIRQPKTFRPNEGTIYINVELAPLAAQHFESGRQSEAAILISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL +V K W L ID +I+ DGNL+D A+ AAL + P
Sbjct: 110 FKDSKC-----VDLESLCIVADKKVWSLRIDINIINHDGNLIDCASIAVLAALMHFHRPD 164
Query: 121 VHVAAEAASDEQPEVDI---SDEEFLQFDTSGVPV-ITTLTKVGKHYIVDATLEEESQMS 176
V E E+ I S+++FL PV ++ +T + I+D T EE
Sbjct: 165 VTSTGE-------EIIIHPASEKDFLPLTLFHYPVCVSFITFENGNTIMDPTYIEERVGV 217
Query: 177 SAVSISINRQGHICGM 192
+ +++ +N +C +
Sbjct: 218 AELTLGMNSYRELCSL 233
>gi|148703326|gb|EDL35273.1| exosome component 8, isoform CRA_b [Mus musculus]
Length = 212
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 98/217 (45%), Gaps = 13/217 (5%)
Query: 13 ELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAG 71
E P PD+G V VD P F G GEE A+++S +
Sbjct: 1 EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF----IADVVDNSQV 54
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
I L + GK+ W LY D + + DGN+LDA A+ AAL N +P V + E A
Sbjct: 55 IKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA--- 111
Query: 132 QPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAVSISINRQGHIC 190
EV++ + +L T+ PV T+ IVD T EEE + +++ + G +C
Sbjct: 112 LAEVNLKKKSYLNVRTN--PVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLC 169
Query: 191 GMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ K GG GL + + D +S A +++ LD I
Sbjct: 170 CLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVI 206
>gi|330508838|ref|YP_004385266.1| exosome complex exonuclease 2 [Methanosaeta concilii GP6]
gi|328929646|gb|AEB69448.1| exosome complex exonuclease 2 [Methanosaeta concilii GP6]
Length = 258
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GS+ V+ VK + G P P++G + + P A P+FE E+ EL+ +
Sbjct: 52 LGSSQVLVGVKMQPGEPFQDSPNRGVIITNAELVPLASPSFEPGPPNEVGIELARLVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ +DL +L + GK W ++ID ++ GN+LDA +AL T +P
Sbjct: 112 VRESKA-----VDLEALCIEPGKKVWIVFIDVHILDDCGNILDAASLGAISALLCTKVP- 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
A+ E + I D +P+ TT + + D +EEE+ ++ ++
Sbjct: 166 ---ASRFGLGEDYILPIRD----------IPIATTAIEFSDVLMFDPGVEEEAIANTKLT 212
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ G ICGM K G L+P + +I +A ++++ +K
Sbjct: 213 VITTTNGDICGMQKSGTGMLNPEQVYRIIDIACEKAKEIREKF 255
>gi|56118510|ref|NP_001007919.1| exosome component 8 [Xenopus (Silurana) tropicalis]
gi|51513372|gb|AAH80360.1| exosc8 protein [Xenopus (Silurana) tropicalis]
gi|89269528|emb|CAJ82996.1| exosome component 8 [Xenopus (Silurana) tropicalis]
Length = 276
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 106/235 (45%), Gaps = 13/235 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+ V+ VKAE P A P+KG V VD +P F G GEE A+++S
Sbjct: 53 LGNCTVLCGVKAEFTAPPADAPNKGYVVPNVDLTPLCSSQFRPGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + L + GK+ W LY D + + DGNLLD A+ AAL N +P
Sbjct: 109 --IADVIDNSQMLLKEDLCIAHGKLAWVLYCDLICLDYDGNLLDTCMCALVAALQNVRLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY-IVDATLEEESQMSSA 178
SV + E EV++ + L+ PV T+ + +VD T EEE S
Sbjct: 167 SVKINEETG---LAEVNLKTKHALKILKH--PVATSFAVFDDTFLLVDPTGEEEGLASGL 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
+++ + +C K GG L + + IS A +++ + L +A+ ++
Sbjct: 222 LTVVTDEDERLCATRKPGGSALAAEKLQECISRAITRHKEVTNLLQEALASVKSE 276
>gi|352682029|ref|YP_004892553.1| exosome complex exonuclease 2 [Thermoproteus tenax Kra 1]
gi|350274828|emb|CCC81474.1| exosome complex exonuclease 2, aRrp42 (RNase PH domain)
[Thermoproteus tenax Kra 1]
Length = 274
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK LG P PD+G + + + P A P E +E + EL+ +
Sbjct: 59 LGRTRVVAGVKIGLGNPFPDAPDEGVLVVNAEVLPHASPYSEVGPPDETAIELARVVDRG 118
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L SG ID L + + KV + +++D V++ DGNL+DA A AAL +T +P+
Sbjct: 119 L--RHSGF---IDFKRLAIDQSKV-YVVWLDLYVLNDDGNLVDASNLAAVAALRSTMLPT 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V V EA + ++D ++ + D S P+ +L K+ IVD LEEE + S ++
Sbjct: 173 V-VKDEAGAY---KLDKNNRTAMPSDLSKAPISVSLGKIDTRIIVDPILEEELSLDSRIT 228
Query: 181 ISINRQGHICGMIKRGG 197
I+I+ Q +I + K G
Sbjct: 229 ITIS-QDNIVSIQKTIG 244
>gi|425766655|gb|EKV05258.1| Exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Penicillium digitatum Pd1]
gi|425775306|gb|EKV13584.1| Exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Penicillium digitatum PHI26]
Length = 324
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 31/224 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T++I + AE+ +P +P G I ++ S P +E ++ A ++AL
Sbjct: 78 LGKTNLIVRISAEVTKPREDRPFDGLFNINLELSAMGSPAWENGRTNDIEAYATNALDRI 137
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +D SL +++G CW + D +I DGN+ DA AI A L +
Sbjct: 138 IRHSNA-----LDTESLCILKGVSCWSIRADIHIIDYDGNITDAACIAIMAGLQHF---- 188
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT-SGVPVITTLTKV-----------GKHYIVDAT 168
+P+ + D + + VPV +T KH IVDAT
Sbjct: 189 ----------RRPDAVVRDGRVIVYGVEQRVPVALNITHKPLSVTFHTFNESKHVIVDAT 238
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
L+EE + I IN G +C + K G D VI++ +VA
Sbjct: 239 LKEEQAAEGDLVIGINSAGDVCYLSKYAGAPADAMVIVNKTNVA 282
>gi|424811893|ref|ZP_18237133.1| RNase PH-related exoribonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756115|gb|EGQ39698.1| RNase PH-related exoribonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 260
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 12/225 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ +K ++ P +PD G + + +P A +E +E EL+ +
Sbjct: 48 IGDTQLVVGLKVDVEEPYDDRPDAGTLVTNAELAPMAAREYESGPPQEPGVELARVVDRG 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +D L + EG+ + L+ID V++ DGNLLDA A+L + +P
Sbjct: 108 IR-----EAPAVDFEELCIEEGEKVYTLFIDVHVLNDDGNLLDAAALGAMASLKDGFLPD 162
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ E EQPE E VP+ T ++G + + D T EE + + ++
Sbjct: 163 YN-EEEGLLREQPE------EGSDIPMESVPITATGRRIGDNLLFDTTSREEEALGARLT 215
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
I+ G+I M K G ++ S + + + +A S L + L+
Sbjct: 216 IAFTEDGNIVAMQKGGDDSMELSDVTEAVEIAEQKSEMLREVLEQ 260
>gi|346473845|gb|AEO36767.1| hypothetical protein [Amblyomma maculatum]
Length = 223
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 94/202 (46%), Gaps = 16/202 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+ VKAEL P+ P +G + VD P P F+ G GE+ A++ S L
Sbjct: 1 MGCTTVVCGVKAELAEPAVAMPKQGYIVPNVDLLPLCSPMFKPGPPGEQ--AQVLSKLML 58
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+L +DL L + EGK+ W L +D + DGN+ +A A AAL + +P
Sbjct: 59 DILTSSDS----LDLEKLCIEEGKLVWSLNVDLTCLDYDGNVAEACILAATAALCSLTLP 114
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI-VDATLEEESQMSSA 178
V +D + V + EE T G P+ T + I VD T EEE +
Sbjct: 115 KV-----LTTDGEVNVLLEREE--AKVTEG-PLAATFAVLADDTIVVDPTHEEECLAAET 166
Query: 179 VSISINRQGHICGMIKRGGVGL 200
++ +N ICG+ K GG L
Sbjct: 167 FTVILNADNKICGVHKPGGSAL 188
>gi|47227071|emb|CAG00433.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 17/231 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T +I +KAEL P+ P KG + VD P F G GE+ Q
Sbjct: 53 VGNTTIICGIKAELANPTVEAPGKGYIVPNVDLPPLCSSRFRPGPPGEQA--------QA 104
Query: 60 C--LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
C + + I L + GK+CW LY D + + DGNL DA A+ AAL T
Sbjct: 105 CSQFIADLIESSEIIQPEDLCIERGKLCWVLYCDLMCLDYDGNLRDACVIALLAALKITQ 164
Query: 118 IPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMS 176
+P ++ E P VD+ + L PV ++ + IVD T EEE+ +
Sbjct: 165 LPEAIISTETC---LPVVDLEKKRGLNIRKH--PVGSSFCIFDESTLIVDPTDEEENLST 219
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ +++ + +C + K GGV L + + I+ A +++ +D I
Sbjct: 220 AQITVVTDEGDGLCAVHKPGGVSLSGEKLQECINRATVRQKEIQKLIDKVI 270
>gi|449303023|gb|EMC99031.1| hypothetical protein BAUCODRAFT_146018 [Baudoinia compniacensis
UAMH 10762]
Length = 295
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 99/215 (46%), Gaps = 14/215 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +V E+ P + G I + P A P FE ++ +S L+
Sbjct: 54 IGKTRVLCNVSCEVVTPYPDRKFDGVFTISCELGPMASPAFEVGRPDQTEMLISRILEKT 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ C+ + D V+ DGNLLDA A+ AAL + P
Sbjct: 114 I--RRSGA---LDTESLCIVAGQKCFHVRADIHVLDHDGNLLDAACIALMAALLHFRRPD 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVP--VITTLTKVGKHYIVDATLEEESQMSSA 178
V E + + + E ++ P + T+ G+ + DATL EE
Sbjct: 169 FEVHGEDVT----VFSVREREPVKLTVQHHPFCITTSYYDSGQIMLTDATLLEEQCREGE 224
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
V +S+NR G +C + K GG +D L M++ N
Sbjct: 225 VIVSMNRFGEVCQVAKYGGAAVDG---LSMLTCVN 256
>gi|307207928|gb|EFN85487.1| Exosome complex exonuclease RRP43 [Harpegnathos saltator]
Length = 279
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 11/201 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +KAEL P P+ G + V+ SP P F G A++ S L
Sbjct: 53 LGSTTVVCGIKAELAIPKTDTPECGYIIPNVELSPLCSPKFRP-GPPSEQAQVISKLIDI 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + IDL L + + K+ W LY D L ++ +G+++DA A+ AAL +P
Sbjct: 112 ILKNSTA----IDLKDLCICKRKLVWVLYCDMLCLNYNGSVIDACTGALTAALKTLTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAV 179
V+ E + ++ F +PV + K IVD T EEES +
Sbjct: 168 VNYNLETGVTV-----VHPKKRKPFVMKMLPVSISFAIFEKQMLIVDPTDEEESLSLGRL 222
Query: 180 SISINRQGHICGMIKRGGVGL 200
S+ ++ + IC + K GG+ +
Sbjct: 223 SVVMDSEEEICYVHKPGGIPI 243
>gi|226293456|gb|EEH48876.1| exosome complex exonuclease RRP45 [Paracoccidioides brasiliensis
Pb18]
Length = 300
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 14/215 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + G + V+ + A P F+ E+ +L+ L
Sbjct: 51 LGKTSVVVRISAEVTKPHPERENDGIFTVVVELNDMASPAFKTGWQSEMETQLARILDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D VI SDG L+D+ AI AL + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V + PE + + + +P+ TT G+ ++DA +EE+
Sbjct: 166 AIVREGRVTVFSPEERVPS----PLNLTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSEGN 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
+ I++N+ G + IK G DP L MIS +N
Sbjct: 222 LIIALNKTGELALYIKSDGTPADP---LSMISCSN 253
>gi|221221406|gb|ACM09364.1| Exosome complex exonuclease RRP45 [Salmo salar]
Length = 231
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 11/186 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A V EL P +P++G + ++ SP A P FE EL +L+ L+ C
Sbjct: 50 LGKTRIMAQVSCELITPKENRPNEGIMFFNIELSPMASPAFEMGRQSELLVKLNRQLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGNL+DA A AAL + P
Sbjct: 110 LRNSKC-----IDTESLCVVSGEKVWQIRVDVRLLNHDGNLMDAASIAAIAALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V + E + E + + + +P+ + + + G + +VD EE M
Sbjct: 165 VGIQGEEVTVYSTE----ERDPIPLSIYHMPICVSFSFFQQGTYLLVDPCEREERVMDGL 220
Query: 179 VSISIN 184
+ I++N
Sbjct: 221 LMIAMN 226
>gi|350402638|ref|XP_003486552.1| PREDICTED: exosome complex component RRP45-like [Bombus impatiens]
Length = 410
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 20/198 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA V ++ +P +P++G + I V+ +P A F+G E+S +S L+ C
Sbjct: 50 LGQTRVIAQVTCDIQQPKTSRPNEGMLHINVELNPMAAQHFDGGRQSEISVLISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K IDL SL ++ K W+L +D VI+ DGNL+D A AALS+ P
Sbjct: 110 YQDSKC-----IDLESLCIIADKQVWNLRVDVNVINHDGNLIDCASIATLAALSHFHRPD 164
Query: 121 VHVAAEAASDEQPEVDI-----SDEEFLQFDTSGVPV-ITTLTKVGKHYIVDATLEEESQ 174
V E DI S+++ L PV ++ +T ++D T EE
Sbjct: 165 VTSNGE---------DIIVHPFSEKDPLPLTLYHYPVCVSFITFESGSTVMDPTYLEERV 215
Query: 175 MSSAVSISINRQGHICGM 192
+ +++ IN +C +
Sbjct: 216 GVAQLTLGINSYRELCSL 233
>gi|407464320|ref|YP_006775202.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus sp. AR2]
gi|407047508|gb|AFS82260.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosopumilus sp. AR2]
Length = 272
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 24/237 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFEGRGGEELSAELSSA 56
+G T+VI VK + RP PD G +F+ C+ P + PT E + EL+
Sbjct: 54 LGDTEVICGVKIQPDRPF---PDTGDKGLFI-CTAELLPLSHPTVETGPPQPPVIELARV 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + +D+S LV+ + K ++ D +V+ DGNL DA A AAL T
Sbjct: 110 VDRGIRESHM-----VDVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYAATAALLTT 164
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
P + +D+ P + ++ L T +PV T+ K+G + +VD +E M
Sbjct: 165 KTPKWN-----WTDDSPVLAEGEDRPLPITT--IPVSVTMGKIGNYIVVDPNGDEWESMD 217
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
+ V+I+ + G+IC + K G G D I+ +S ++ K+ ++ AA D
Sbjct: 218 ARVTITTDSDGNICALQKGGSDGF----TQDEINQCGEISVRIGAKIREKLKAAQKD 270
>gi|254168333|ref|ZP_04875178.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
boonei T469]
gi|197622614|gb|EDY35184.1| 3' exoribonuclease family, domain 1 protein [Aciduliprofundum
boonei T469]
Length = 226
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 21/187 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T V+ VK E G P P+ G + + +P A PTFE G GEE + EL+ +
Sbjct: 58 LGNTRVLVGVKIEPGTPFPDTPNMGILTTNAELAPLASPTFEPGPPGEE-AIELARVVDR 116
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + IDL LV+ EG+ W ++ID V+ DGNL DA G AAL+N +P
Sbjct: 117 GIREGHA-----IDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNATVP 171
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
+ D+ ++ + PV T K+G + D L+EES S+ +
Sbjct: 172 ASR------------YDLGED--FKLPVQHYPVPVTFAKIGDWIVADPNLDEESIASARL 217
Query: 180 SISINRQ 186
+++ N +
Sbjct: 218 TVATNEE 224
>gi|195334771|ref|XP_002034050.1| GM21652 [Drosophila sechellia]
gi|194126020|gb|EDW48063.1| GM21652 [Drosophila sechellia]
Length = 467
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+ +TD++ VK E+ P+ + P+ GK+ FVDCS A P FEGRGG +L+ EL +L++
Sbjct: 53 LANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSDLAQELILSLKNA 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA 104
+ + +L ++ G+ CW LYID ++ + LLDA
Sbjct: 113 Y-----ESPLAFNYRTLCLIPGQQCWKLYID-ILNQNSARLLDA 150
>gi|357152306|ref|XP_003576076.1| PREDICTED: exosome complex component RRP43-like [Brachypodium
distachyon]
Length = 307
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 112/240 (46%), Gaps = 11/240 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++AS+K E+ P PD+G VA+ P P E++ LS AL+
Sbjct: 71 LGDTAMLASIKLEVMSPPTETPDEGSVAVEFHMPPICSPLVRPGRPAEMAPVLSKALEDV 130
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG I+L L ++ GK W Y+D +++DG+L DA + AA ++ IP
Sbjct: 131 LMS--SGM---INLKELCLISGKASWLAYLDVYCLNADGSLFDAALISAVAAFTHLEIPL 185
Query: 121 VHVAAE------AASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
V V + ++ + + ++ + E + +P T + + D T EEES
Sbjct: 186 VSVGDDGRVFTVGGNEGKTKYELVNREKRKLTLKDIPFALTCALHKDNVLADPTAEEESI 245
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
+ + V+++++ + + K GG + I I++A +L + L + A + D+
Sbjct: 246 IETFVTVALDSSDRLVSIQKPGGGVTSMATIKTCITLAKERRHKLQEILMDSVEAMEVDQ 305
>gi|161527941|ref|YP_001581767.1| exosome complex RNA-binding protein Rrp42 [Nitrosopumilus maritimus
SCM1]
gi|160339242|gb|ABX12329.1| 3' exoribonuclease [Nitrosopumilus maritimus SCM1]
Length = 272
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 16/225 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T+V+ VK + RP DKG + P + PT E G G E+ EL+ +
Sbjct: 54 LGDTEVVCGVKIQPDRPFPDTGDKGLFICTAELLPLSHPTVETGPPGPEV-IELARVVDR 112
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ ID+S LV+ + K ++ D +V+ DGNL DA A AAL ++ P
Sbjct: 113 GIRESHM-----IDVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYAATAALLSSKSP 167
Query: 120 SVHVAAEA-ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
+ +A A E EVD+ + +PV T+ K+G H IVD +E + M +
Sbjct: 168 KWNWVDDAPALVEGEEVDVP--------ITTIPVSVTMGKIGNHIIVDPNGDEWASMDAR 219
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
++I+ + G+IC + K G G I+ ++ V ++ +KL
Sbjct: 220 ITITSDSDGNICALQKGGDDGFTQDEIVQCGEISVRVGAKIREKL 264
>gi|340728541|ref|XP_003402580.1| PREDICTED: exosome complex component RRP45-like [Bombus terrestris]
Length = 410
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 10/193 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA V ++ +P +P++G + I V+ +P A F+G E+S +S L+ C
Sbjct: 50 LGQTRVIAQVTCDIQQPKTSRPNEGMLHINVELNPMAAQHFDGGRQSEISILISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K IDL SL ++ K W+L +D VI+ DGNL+D A AALS+ P
Sbjct: 110 YQDSKC-----IDLESLCIIADKQVWNLRVDVNVINHDGNLIDCASIATLAALSHFHRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPV-ITTLTKVGKHYIVDATLEEESQMSSAV 179
V E P S+++ L PV ++ +T ++D T EE + +
Sbjct: 165 VTSNGEDII-VHP---FSEKDPLPLTLYHYPVCVSFITFESGSTVMDPTYLEERVGVAQL 220
Query: 180 SISINRQGHICGM 192
++ IN +C +
Sbjct: 221 TLGINSYRELCSL 233
>gi|71724847|gb|AAZ38885.1| 3' exoribonuclease [Xenopus laevis]
Length = 431
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V E+ P +P +G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGKTRVLCQVSCEIVTPKMSRPTEGILFFNLEISPMAFPGFEMGRQSELSVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL V G+ W + +D +++ +GN++DA A A L + P
Sbjct: 110 LRNSKC-----IDTESLCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTVYTPE----ERDPVPLSIHHMPICVSFAFFQQGIYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L VA
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKEQVLRCSKVA 254
>gi|297837509|ref|XP_002886636.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297332477|gb|EFH62895.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 302
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 24/215 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A+++ E+ PS PD+G +A+ CSPT P +S LS
Sbjct: 67 IGSTTMLAAIRMEVMTPSTDSPDEGCIALEFHMPPICSPTVRPGRPADAAPVISKRLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + IDL L +V GK W Y+D + +DG L DA + AA SN
Sbjct: 127 IL---------SSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLSAVAAFSNL 177
Query: 117 GIPSV------HVAAEAASDEQPEVDISDEEFL-----QFDTSGVPVITTLTKVGKHYIV 165
IP V + A +Q I+++E + + +P T + +
Sbjct: 178 QIPVVALNDNGRIVAITGGKDQDNASITEKEAVNKEKRKLTLKNIPFSLTCILHKTYILA 237
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGL 200
D T EEES M + V++ ++ + K GG L
Sbjct: 238 DPTTEEESIMDTLVTVVLDSSDQMVSFYKSGGTAL 272
>gi|147898885|ref|NP_001085439.1| exosome component 9 [Xenopus laevis]
gi|49114791|gb|AAH72749.1| SCL75 protein [Xenopus laevis]
Length = 431
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V E+ P +P +G + ++ SP A P FE ELS +L+ L+ C
Sbjct: 50 LGKTRVLCQVSCEIVTPKMSRPTEGILFFNLEISPMAFPGFEMGRQSELSVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL V G+ W + +D +++ +GN++DA A A L + P
Sbjct: 110 LRNSKC-----IDTESLCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTVYTPE----ERDPVPLSIHHMPICVSFAFFQQGIYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L VA
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKEQVLRCSKVA 254
>gi|410947312|ref|XP_003980394.1| PREDICTED: exosome complex component RRP43 [Felis catus]
Length = 257
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 37/229 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE P PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFAAPPTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKN---- 162
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
++A + P + FL F +PV TL IVD T EEE + +
Sbjct: 163 --ELSANTYTFSSPYL------FLDF---LIPV--TL------LIVDPTGEEEHLATGTL 203
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 204 TVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 250
>gi|224043308|ref|XP_002196618.1| PREDICTED: exosome complex component RRP43 [Taeniopygia guttata]
Length = 276
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 112/237 (47%), Gaps = 26/237 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDC-SPTAEPTFEGRGGEELSAE---LSSA 56
+G+T VI VKAEL P+A +KG + V+ S AE G GEE A ++
Sbjct: 53 LGNTTVICGVKAELAAPAADSANKGYIVPNVELPSLCAERFRSGPPGEEAQAASQFIADV 112
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++ + K L + GK+ W LY D + + DGNLLDA A+ AAL N
Sbjct: 113 IENSQMIVKE---------DLCIANGKLAWVLYCDIICLDYDGNLLDASVFALLAALKNV 163
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQM 175
+PSV + E EV++ + L PV T+ IVD T EEE
Sbjct: 164 QLPSVTINEETGLS---EVNLKQKNPLIIRKH--PVATSFAIFDDTLLIVDPTAEEEDLA 218
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKLDSEI 227
+ V+I + +G +C + K GG L + + D I+ A ++R +L+DK+ I
Sbjct: 219 TGTVTIVTDEEGRLCSVHKPGGSPLTGAKLQDCITRA--ITRHKEVKKLIDKVIKSI 273
>gi|124027457|ref|YP_001012777.1| exosome complex RNA-binding protein Rrp42 [Hyperthermus butylicus
DSM 5456]
gi|123978151|gb|ABM80432.1| RNase PH-related exoribonuclease [Hyperthermus butylicus DSM 5456]
Length = 328
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 21/238 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK ++ P P++ + + + P A PTFE +E + EL+ +
Sbjct: 58 LGQTVVLAGVKTDIVAPFPDTPNEAVLVVHAEFVPLASPTFEPGPPDENAIELARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ A L LV+ GK W LY+D +++ DGNL DA A AAL T +P
Sbjct: 118 LREIKAVA-----LDKLVLEPGKHVWRLYVDLYILNHDGNLFDASMLAAMAALMTTRLP- 171
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVP-----VITTLTKVGKHYIVDATLEEESQM 175
A +++ VD S +F T VP V T+ K+ IVD T EEE
Sbjct: 172 ----AAVKTEDGYTVDRS-----KF-TGLVPVNHKVVTVTIAKLSNRLIVDPTYEEEQVA 221
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
+ + ++++ G I G+ K G L +L +++A ++ + L+ ++ A+
Sbjct: 222 DTRLVVAVSDDGRIAGIQKTGMGDLTYKEVLTAVAIALNKAQVYLKALEEKVVPYRAE 279
>gi|307214871|gb|EFN89739.1| Exosome complex exonuclease RRP45 [Harpegnathos saltator]
Length = 390
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 16/196 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T IA V ++ +P +P++G + I V+ S A FE E + +S L+ C
Sbjct: 50 LGHTKAIAQVSCDIQQPKISRPNEGMIHINVELSQLAAQNFESGRQSEAAVMISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K +DL SL +V K W++ +D +I+ DGNL+D A AALS+ P
Sbjct: 110 FKDSKC-----VDLESLCIVADKKVWNIRVDINIINHDGNLIDCASIATLAALSHFHRPD 164
Query: 121 VHVAAEAASDEQPEVDI---SDEEFLQFDTSGVPV-ITTLTKVGKHYIVDATLEEESQMS 176
V E E+ I S+++FL PV I+ +T + I+D T EE
Sbjct: 165 VTSTGE-------EIIIHPASEKDFLSLTLFHYPVCISFITFESGNTIMDPTYIEERIGV 217
Query: 177 SAVSISINRQGHICGM 192
+ +++ +N +C +
Sbjct: 218 ARLTLGVNSYKELCSL 233
>gi|413935085|gb|AFW69636.1| hypothetical protein ZEAMMB73_056962 [Zea mays]
Length = 63
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 41/51 (80%)
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
MSSAVS+S+NR G ICG+ KRGG GLDPSVI DMISVA VS+Q + LDS
Sbjct: 1 MSSAVSVSVNRHGQICGLTKRGGAGLDPSVIFDMISVAKHVSQQFISLLDS 51
>gi|187607878|ref|NP_001120226.1| exosome component 9 [Xenopus (Silurana) tropicalis]
gi|169642591|gb|AAI60389.1| LOC100145275 protein [Xenopus (Silurana) tropicalis]
Length = 406
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V +E+ P +P +G + + SP A P FE ELS +L+ L+ C
Sbjct: 50 LGKTRVLCQVSSEIVTPKMNRPTEGILFFDLAISPMAFPGFEMGRNSELSVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL V G+ W + +D +++ +GN++DA A A L + P
Sbjct: 110 LRNSKC-----IDTESLCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD + EE M
Sbjct: 165 VSVQGEEVTVYTPE----ERDPVPLSIHHMPICVSFAFFQQGIYLLVDPSEREEWVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ IS+N+ IC + GG+ L +L VA
Sbjct: 221 LVISMNKHREICTIQSSGGIMLLKEQVLRCSKVA 254
>gi|328767537|gb|EGF77586.1| hypothetical protein BATDEDRAFT_91577 [Batrachochytrium
dendrobatidis JAM81]
Length = 276
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++++V E+ RPS+ P G + + SP A P FE E +S L+
Sbjct: 52 LGKTRIMSTVSCEIVRPSSGNPSDGVIHFNTEFSPMASPAFEVDSTSENEILISRMLEKA 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + +D L +V G+ W + +D V++ +GN+LD A +L + P
Sbjct: 112 LRRARV-----VDTEGLCIVAGEKVWAIRVDIRVLNHEGNILDCACIAAMCSLLHFKRPD 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + E ++ + + +P+ T G++ ++D +L EE
Sbjct: 167 VTVIGEDVTIHTLE----EKNPIGLNIHHIPICVTFAFFHQGEYQVIDPSLLEEQAQDGD 222
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
++I +N +C + K GG + P ++ +VA
Sbjct: 223 MTIVVNIHRELCTLSKAGGTPISPEQVIHCANVA 256
>gi|289740851|gb|ADD19173.1| exosomal 3'-5' exoribonuclease complex subunit Rrp45 [Glossina
morsitans morsitans]
Length = 404
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 21/241 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V +ELG P A +P++G + I V+ P A FE EL+ +++ L+
Sbjct: 50 LGETKVLGQVSSELGEPKATRPNEGILHINVELGPMAAAHFEAGRNCELTVQINRTLERT 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ IDL SL V+ + W L +D V++ +GNL+D A AL++ P
Sbjct: 110 FKDSRA-----IDLESLCVISEERVWMLRVDLNVLNHEGNLIDCCSVATLCALAHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDI---SDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQM 175
V V + E+ I +++E L+ PV + G+ + D T+ EE
Sbjct: 165 VSVIED-------EIRIHTSAEKEPLKMVMHHYPVCVSYVIFDGGRIAVADPTVAEERIS 217
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDM----ISVANFVSRQLMDKLDSEIAAAD 231
+ + IN G +C + G P+++L A V +Q+ L+++ A +
Sbjct: 218 DTQMIFGINSFGELCCLNLGGSSLTSPTLLLQCSKKAAKHAKSVVKQVKQSLENDSEARE 277
Query: 232 A 232
A
Sbjct: 278 A 278
>gi|159490978|ref|XP_001703450.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158280374|gb|EDP06132.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 296
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 17/218 (7%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
GST V+A V A L P +P +G + V+ SP A P FE G+ GE+ + +++ ++
Sbjct: 55 GSTRVMAVVSAALEAPYPDRPSEGPLRFNVEFSPMASPAFEPGKPGED-AIQVARLIERG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKV-CWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +SGA +D +L V G+V W L +D V+ GNLLD A AAL P
Sbjct: 114 LR--QSGA---VDQEALWVGAGRVRVWALRVDCHVLDHGGNLLDCCFLAALAALMAFRKP 168
Query: 120 SVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEESQ 174
V V E+ S+ PEV E + +PV T L + G + D T +EE+
Sbjct: 169 EVEVGGESGSEIIVHPPEV----REPVPLTIHHLPVAVTFALFQAGDMLVADPTWKEEAA 224
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ + ++ +N +C + K G+GL P + + +A
Sbjct: 225 AAGSCTVVMNPAQEVCCVHKADGIGLSPEQFMRCVRLA 262
>gi|442763221|gb|JAA73769.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp43,
partial [Ixodes ricinus]
Length = 257
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 22/220 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+ +KAEL PS +P G + VD P P F+ G G + A++ S +
Sbjct: 55 MGCTTVVCGIKAELAEPSVSEPKCGFIVPNVDLPPLCSPMFKPGPPGPQ--AQVLSTMML 112
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+L + +DL L + E K+CW L +D + DGNL +A A AALS+ +P
Sbjct: 113 DVLSNSNC----VDLEKLCIEEAKLCWCLQLDLTCLDYDGNLAEACVLAATAALSSLTLP 168
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGV---PVITTLTKVGKHYIV-DATLEEESQM 175
V A + +VD+ L+ + GV P+ + + +V D T EEE
Sbjct: 169 KVSTA-------EGKVDV----LLEREAVGVSPGPLAASFAVLADDVVVADPTHEEECLA 217
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFV 215
++ + +C + K GG L P + D + + +V
Sbjct: 218 QETFTVVLAADDTLCTVHKPGGSFLSPEQMSDHLEQSVYV 257
>gi|385301287|gb|EIF45489.1| rrp45p [Dekkera bruxellensis AWRI1499]
Length = 261
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 42/240 (17%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE---GRGGEELSAELSSAL 57
+G T+V + A + +P +P +G I + SP P FE G G S + S +
Sbjct: 18 LGKTEVACKISASIEQPYKDRPFEGLFQINTEISPMCSPFFEVSQGAAGGTSSRQTSEEI 77
Query: 58 QHCLLGGKS-GAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ KS +DL +L +V G CW + D ++ DGN +DA A+ AL
Sbjct: 78 LISRMIEKSVRRSNALDLENLCLVAGSKCWSVRADLHFLNYDGNFIDASCIAVMTAL--- 134
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTS----------GVPVITTLTKV------- 159
+H ++P+V++S ++ + FDT +P+ T
Sbjct: 135 ----LHF-------KKPDVEVSGDDIVVFDTKQRDPVPLSILHIPLCVTFNFYNPNGDEE 183
Query: 160 -------GKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
G+ +VD L EE +++I++N+ +C ++K GG+ +D S+I++ +
Sbjct: 184 NIKGESNGELIVVDTNLIEERLSLGSMTITLNKNQEVCQLLKSGGLNIDASLIMNCWYIC 243
>gi|312080640|ref|XP_003142686.1| hypothetical protein LOAG_07104 [Loa loa]
gi|307762153|gb|EFO21387.1| hypothetical protein LOAG_07104 [Loa loa]
Length = 521
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 24/221 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V L PS ++ + G V + VD SP A P +E GR G + EL L+
Sbjct: 178 LGETKVLAQVSCSLVEPSTVRGNMGTVEVHVDMSPMASPDYEDGRLGSK-GLELMRILE- 235
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL SG IDL SL + K W + ID V++SDG+L+D A AL++ P
Sbjct: 236 -LLYRNSGV---IDLESLCLRTFKQVWQIRIDVHVLASDGSLVDCACIASLTALAHFRRP 291
Query: 120 SVHV------AAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEE 171
V V A +DE+ + + + +PV T +T G++ I+D T +E
Sbjct: 292 DVSVLPDSIIIASHGNDEKMPISL--------NIYHMPVCITFGITSDGQN-IIDPTDKE 342
Query: 172 ESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
E + ++ ++ N++ IC + + G L +I+ + A
Sbjct: 343 EQCLRGSLIVATNKRHEICALHQSGNFLLSEQLIVQCVDRA 383
>gi|255935559|ref|XP_002558806.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583426|emb|CAP91438.1| Pc13g03690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 297
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 31/224 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T++I + AE+ +P +P G I ++ + P +E ++ A ++ L
Sbjct: 51 LGKTNIIVRISAEVTKPREDRPFDGLFNINLELTAMGSPAWESGRTNDIEAYATNTLDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +D SL +++G CW + D VI DGN+ DA AI A L +
Sbjct: 111 IRHSNA-----LDTESLCILKGVSCWSIRADVHVIDYDGNITDAACIAIMAGLQHF---- 161
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT-SGVPVITTLTKV-----------GKHYIVDAT 168
+P+ + D + + VPV +T KH IVDAT
Sbjct: 162 ----------RRPDAVVRDGRVIVYGVEQRVPVALNITHKPLSVTFHTFNDSKHVIVDAT 211
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
L+EE + I IN G +C + K G D VI+ +VA
Sbjct: 212 LKEEQAAEGDLVIGINSAGDVCYLSKYAGAPADAMVIVKKTNVA 255
>gi|156032965|ref|XP_001585319.1| hypothetical protein SS1G_13558 [Sclerotinia sclerotiorum 1980]
gi|154698961|gb|EDN98699.1| hypothetical protein SS1G_13558 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 209
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 16/189 (8%)
Query: 37 AEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVIS 96
A P FE E LS L+ L A +D SL ++ G+ CW + D ++S
Sbjct: 2 ASPAFETNRPTEQEVLLSRLLEKTL-----RRSAALDTESLCLIAGQKCWSVRADVHILS 56
Query: 97 SDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
DGNL+DA AI AAL + P E + +++ E + P+ T
Sbjct: 57 HDGNLIDASCIAIIAALQHFKKPDTSTEGETVT----VYTLAEREPVPLSLLHFPLCVTF 112
Query: 157 TKVGKH----YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ GK ++D TL EE + +IS+NR G +C + K GG+ +D L+++
Sbjct: 113 SFYGKGEEQVRLLDTTLLEEQLREGSCTISMNRHGEVCQIAKLGGIAVDA---LELLQCT 169
Query: 213 NFVSRQLMD 221
N ++ D
Sbjct: 170 NMALEKVKD 178
>gi|119872347|ref|YP_930354.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum islandicum
DSM 4184]
gi|119673755|gb|ABL88011.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum islandicum DSM
4184]
Length = 274
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 21/189 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSAL--- 57
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+ +
Sbjct: 59 LGKTHVVAGVKVSLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVIDRG 118
Query: 58 -QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+HC +D LVV EG + L++D VI+ DGNL+DA A AAL +T
Sbjct: 119 IRHC---------GYVDFKKLVV-EGGKAYVLWVDLYVINDDGNLIDAANLAAVAALKDT 168
Query: 117 GIPSVHVAAEAASDEQ-PEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
+P V DEQ ++D +++ L + S P+ ++ K+G +D T EEE +
Sbjct: 169 QLPVV------VKDEQGVKLDRNNKTPLPIEVSKAPIAVSVGKIGGVLFLDPTFEEELSL 222
Query: 176 SSAVSISIN 184
++ +I+
Sbjct: 223 DGRITFTIS 231
>gi|328790286|ref|XP_624243.3| PREDICTED: exosome complex exonuclease RRP45-like [Apis mellifera]
Length = 414
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 10/193 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA V ++ +P +P++G + I V+ +P A F+ E+S +S L+ C
Sbjct: 50 LGQTRVIAQVTCDIQQPKTSRPNEGMLHINVELNPMAAQHFDSGRQSEISILISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K IDL SL ++ K W+L +D VI+ DGNL+D A AALS+ P
Sbjct: 110 YQDSKC-----IDLESLCIIADKKVWNLRVDINVINHDGNLIDCASIATLAALSHFHRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPV-ITTLTKVGKHYIVDATLEEESQMSSAV 179
V E P S+++ L PV ++ +T + ++D T EE + +
Sbjct: 165 VTSNGEDII-VHP---FSEKDPLPLTLYHYPVCVSFITFESGNTVMDPTYLEERIGVAQL 220
Query: 180 SISINRQGHICGM 192
++ IN +C +
Sbjct: 221 TLGINSYRELCSL 233
>gi|72041533|ref|XP_796992.1| PREDICTED: exosome complex component RRP43-like [Strongylocentrotus
purpuratus]
Length = 275
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 27/233 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K E P+ +P KG + VD P F+ G + A+++S L
Sbjct: 53 LGNTTVVCGIKGEFASPTVEEPKKGYLVPNVDLPPLCSAQFKP-GPPSIQAQVTSQL--- 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + ++ L + EG + W LY D + + DGN++DA A+ AAL N +P
Sbjct: 109 -VADTLLSSNLLNYEDLCIKEGSMVWVLYCDMICLDYDGNIIDACLIALLAALRNVRLPV 167
Query: 121 VHVA-----AEAASDEQPEVDISDE----EFLQFDTSGVPVITTLTKVGKHYIVDATLEE 171
V +A AE +S E ++I ++ F FD S + +VD T+EE
Sbjct: 168 VTIAEDTGLAELSSTEDRSLNIVNQFAATTFSVFDDSIL-------------LVDPTVEE 214
Query: 172 ESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
E + +++ + + G +C + K GG L I D I A ++++ +D
Sbjct: 215 EDLATGLMTVIVTQDGRLCNIHKPGGTPLSTDQIQDCIGRAQTRAKEICSLID 267
>gi|387015828|gb|AFJ50033.1| Exosome complex exonuclease RRP45-like [Crotalus adamanteus]
Length = 434
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ SP A P FE EL +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKPNRATEGILFFNLELSPMASPAFEPGRQSELLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D SL VV G+ W + +D +++ +GN++DA A AL + P
Sbjct: 110 LRNSKC-----VDTESLCVVAGEKVWQIRVDLHLLNHNGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD + +EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPSEQEERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTIQSSGGIML 242
>gi|171185833|ref|YP_001794752.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum neutrophilum
V24Sta]
gi|170935045|gb|ACB40306.1| 3' exoribonuclease [Pyrobaculum neutrophilum V24Sta]
Length = 273
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 19/188 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGRTHVVAGVKVGLGQPFPDAPDEGVLVVSAEVLPHASPYTEVGPPDESAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D L V EG + L++D VI+ DGNL+DA A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLAV-EGGKAYILWVDLYVINDDGNLVDAANLAAVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P+V ++ ++D +++ L D + P+ ++ K+G ++D TLEEE +
Sbjct: 169 QLPAV-----VKEEQGVKLDRNNKTPLPVDLNKAPIAVSIGKIGSVLLLDPTLEEELSLD 223
Query: 177 SAVSISIN 184
++ +I+
Sbjct: 224 GRITFTIS 231
>gi|302830011|ref|XP_002946572.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
nagariensis]
gi|300268318|gb|EFJ52499.1| hypothetical protein VOLCADRAFT_86657 [Volvox carteri f.
nagariensis]
Length = 311
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 18/246 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ V+ E+ RP P +G++A+ V+ +P + + GR + +SA ++ L
Sbjct: 66 IGRTTVLGGVRLEIIRPDETAPSQGQLALNVELAPFSSQDYRPGRQPDHVSA-VTEKLTS 124
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL G G + LSSL + EGK W +D V+ +DG +LD A AAL NT IP
Sbjct: 125 ALLTG----GDAVQLSSLCIAEGKAAWRASLDLYVLDADGCVLDTALLAATAALRNTRIP 180
Query: 120 SV------HVAAEAASDEQPEVDISDEEFLQFDTSGV-----PVITTLTKVGKHYIVDAT 168
+V H A A D + + V P+ T + +VD T
Sbjct: 181 AVRSTREGHYVAVGAGSSGSGGAGGDGGLVAGSPTAVGMGRCPLGLTCCLYRNYILVDPT 240
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGL-DPSVILDMISVANFVSRQLMDKLDSEI 227
EEE + +VS+ +++ G + G+ K GG L D + ++ A R+L L+ +
Sbjct: 241 AEEERLAACSVSVVLDQHGRLQGVYKAGGKVLADAATLVKCTEAARLRYRELSGLLEQSL 300
Query: 228 AAADAD 233
+ A+
Sbjct: 301 SQVAAE 306
>gi|167045226|gb|ABZ09886.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 273
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 20/204 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFEGRGGEELSAELSSA 56
+G T+V+A VK + RP PD G+ IF+ C+ P A P+ E + E++
Sbjct: 54 LGDTEVVAGVKIQPDRPF---PDMGEKGIFI-CTAEILPLAHPSVETGPPQPYVIEIARV 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + +SG IDLS +V+V+ K L+ D +V DGNL DA A AA+ +
Sbjct: 110 VDRGI--RESGM---IDLSQMVLVKDKSVIGLFADNVVTDHDGNLFDACSYASTAAVLTS 164
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P + D++P + D E + +PV T+ +G++ IVD L+E +
Sbjct: 165 KMPKWEM-----KDDKPV--LVDGEESDTPITTIPVSVTMGLIGEYIIVDPNLDEWECLD 217
Query: 177 SAVSISINRQGHICGMIKRGGVGL 200
+ ++I+ N G+I + K G G
Sbjct: 218 ARITITTNSDGNIVALQKGGSSGF 241
>gi|406868202|gb|EKD21239.1| exosome complex exonuclease [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 305
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 36/245 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + + A + P P G I + SP P+ E ++ L S L
Sbjct: 51 LGKTRIHTHISATITPPLPTHPTDGLFTITTELSPMLSPSIESSSRPSVNETLLSRL--- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + +D SL ++ G W + D V+S DGNL+DA + AAL + P
Sbjct: 108 -LEKTIRRSSALDTESLCLIAGSKVWHIRADVHVLSHDGNLVDAACLGVIAALQHFRKPD 166
Query: 121 VHVAAE----AASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG------------KHYI 164
V E ++ E+ V +S L F P+ T + G + +
Sbjct: 167 VETKGEEVIVYSTREREPVKLS---LLHF-----PLCVTFSFYGEGILGKDGEGEKEKVL 218
Query: 165 VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA--------NFVS 216
+DA L EE +V++ +NR G +C + K GGV + +L + VA +F++
Sbjct: 219 LDAGLLEEQLREGSVTVGMNRHGEVCQIAKLGGVPVHALTVLRCVEVAGLKVKEMSSFIA 278
Query: 217 RQLMD 221
R+L +
Sbjct: 279 RRLQE 283
>gi|386876626|ref|ZP_10118725.1| 3' exoribonuclease family, domain 1 [Candidatus Nitrosopumilus
salaria BD31]
gi|386805588|gb|EIJ65108.1| 3' exoribonuclease family, domain 1 [Candidatus Nitrosopumilus
salaria BD31]
Length = 272
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 22/205 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFE-GRGGEELSAELSS 55
+G T+VI VK + RP PD G IF+ C+ P + PT E G G ++ EL+
Sbjct: 54 LGETEVICGVKIQPDRPF---PDMGDKGIFI-CTAELLPLSHPTVETGPPGPDV-IELAR 108
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
+ + ID+S LV+ K ++ D +V+ DGNL DA A AAL +
Sbjct: 109 VVDRGIRESHM-----IDVSQLVIEPNKSVVGVFADNVVVDYDGNLFDACSYAATAALLS 163
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
+ P + +A + + + E + + +PV T+ K+G H IVD +E + M
Sbjct: 164 SKSPKWNWVDDAPT-------LVEGEDMPVPIATIPVSVTMGKIGSHIIVDPNGDEWASM 216
Query: 176 SSAVSISINRQGHICGMIKRGGVGL 200
+ ++I+ + G+IC + K G G
Sbjct: 217 DARITITSDSNGNICALQKGGSDGF 241
>gi|449463354|ref|XP_004149399.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
gi|449503802|ref|XP_004162184.1| PREDICTED: exosome complex component RRP43-like [Cucumis sativus]
Length = 304
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 22/246 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A++K E+ PS PD+G +A+ CSP P +S +LS
Sbjct: 68 IGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDT 127
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ S +G IDL L +V+GK W Y+D + +DG+L DA + AA S+
Sbjct: 128 I--------SSSGM-IDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHL 178
Query: 117 GIPSVHV--------AAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDAT 168
IP V + E E E + ++E + + +P T K+ + D T
Sbjct: 179 QIPVVALNDDGKVVFVCEEEGGENFEKEPVNKENRKLKLNSIPFSLTCLLHKKYILADPT 238
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGL-DPSVILDMISVANFVSRQLMDKLDSEI 227
EEES M + V++ ++ G + K GG L S + D I++ S++L LD I
Sbjct: 239 AEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAI 298
Query: 228 AAADAD 233
+ + D
Sbjct: 299 SGMEID 304
>gi|297829840|ref|XP_002882802.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
lyrata]
gi|297328642|gb|EFH59061.1| hypothetical protein ARALYDRAFT_341414 [Arabidopsis lyrata subsp.
lyrata]
Length = 294
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 27/218 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V A+L +P +P++G +IF + SP A+P+FE E + EL +
Sbjct: 55 LGQTHVMAFVTAQLVQPYKDRPNEGSFSIFTEFSPMADPSFEPVHPGESAVELGRIIDRA 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + +D SL V GK+ W NL+DA A AAL P
Sbjct: 115 LRESRV-----VDTESLCVFAGKLVW-------------NLVDAANIAALAALLTFRRPD 156
Query: 121 VHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV--DATLEEESQM 175
V E + + PE + E L +P+ T K I+ D T+ EE+ M
Sbjct: 157 CTVGGENSQEVIIHPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTVVEEAVM 212
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
S +++++N G IC + K G G++ SVIL + +A+
Sbjct: 213 SGRMTVTVNANGDICAIQKPGEEGVNQSVILHCLRLAS 250
>gi|356526509|ref|XP_003531860.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 302
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 20/208 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++ ++K E+ PS PD+G +AI CSP P +S +LS
Sbjct: 67 IGSTTILTAIKMEVMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPVVSKQLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + IDL L +V GK W Y+D + +DG L DA + A+LS+
Sbjct: 127 I---------SSSKMIDLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVASLSHL 177
Query: 117 GIPSVH-------VAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATL 169
IP V V ++ E + ++E + +P T + + D T
Sbjct: 178 QIPVVAMNDDGKIVLVSEEDGQKREQEPVNKEKRKLTLRSIPFSLTCILHKNYILADPTA 237
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGG 197
EEES M + V++ ++ G + + K GG
Sbjct: 238 EEESIMETHVTVVLDTSGQLISLYKPGG 265
>gi|66529825|ref|XP_624000.1| PREDICTED: exosome complex exonuclease RRP43-like [Apis mellifera]
Length = 281
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 12/207 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ +K+EL P A P+ G + ++ P P F G A++ + L
Sbjct: 53 IGNTTIVCGIKSELAVPKAESPECGYIVPNIELPPLCSPKFRP-GPPSDQAQVITKLVEN 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L A IDL L V +GK+ W LY D + I+ DG+++DA A+ A L+ +P
Sbjct: 112 ILRN----SAAIDLKELCVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLNTLTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQMSSAV 179
+ E V I+ + ++F +PV T ++ D T +EES +
Sbjct: 168 IFYNVETG-----HVSINSTKRIRFPIKALPVSITFAIFDNQLLIADPTDDEESLCLGKL 222
Query: 180 SISINRQGHICGMIKRGGVGLDPSVIL 206
+I +N + IC + K GG+ + + L
Sbjct: 223 TIVMNEE-KICCIHKPGGIPISQDIFL 248
>gi|224138050|ref|XP_002322717.1| predicted protein [Populus trichocarpa]
gi|222867347|gb|EEF04478.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 113/256 (44%), Gaps = 30/256 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A++K E+ PS PD+G +AI CSP P +S +LS
Sbjct: 67 IGSTTMLAAIKMEVMTPSTESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDT 126
Query: 57 L-------------QHCLLGGK-SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLL 102
+ Q +L + SG I+L L +V GK W Y+D + +DG L
Sbjct: 127 ISRQVKFSASIDSPQRLILHAEISGM---INLKELSLVSGKAAWMAYLDIYCLDADGALF 183
Query: 103 DALGAAIKAALSNTGIPSVH--------VAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154
DA + AA S+ IP V + +E + E + ++E + S +P
Sbjct: 184 DAALLSAVAAFSHLQIPIVSLNDDGKIVLVSEEDEGAKLEKEPVNKEKRKLTLSSIPFSL 243
Query: 155 TLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVAN 213
T + + D T EEES M + V++ ++ + K GG V S + D +++
Sbjct: 244 TCILHKNYILADPTAEEESIMETLVTVVLDSSARLVSFYKPGGSVFAYTSAVKDCVALTR 303
Query: 214 FVSRQLMDKLDSEIAA 229
++L + LD I+A
Sbjct: 304 QRVKELQEILDEAISA 319
>gi|389740648|gb|EIM81838.1| hypothetical protein STEHIDRAFT_171488 [Stereum hirsutum FP-91666
SS1]
Length = 287
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 9/201 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ P +PD+G + +D P P F+ + + LS L
Sbjct: 69 LGDTTIVCGVKAEIAEPDLDRPDEGWIVPNIDLPPICSPKFKPGPPSDEAQALSDRLFDS 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + LSSL + GK W LY+D I+ DGN+ DA A+ +AL NT +P
Sbjct: 129 LTSSNV-----LPLSSLCIEPGKSAWVLYVDATCINYDGNVFDAALVAMVSALKNTLLPK 183
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTS-GVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
+ E+ E + S G+P+ + + + D T EE + + +
Sbjct: 184 ATFDPDT---ERTTCSRKKELMSPLELSEGLPISLSFGLFDSNILADPTSFEEPLLDTTI 240
Query: 180 SISINRQGHICGMIKRGGVGL 200
SI++N + + G GL
Sbjct: 241 SITLNTSTKQLLAVSQLGEGL 261
>gi|83283957|gb|ABC01886.1| 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum
tuberosum]
Length = 314
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 22/241 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A++K E+ P+ PD+G +AI CSP P +S +LS
Sbjct: 67 IGSTTMLAAIKMEVMTPTVECPDEGSIAIEFHMPPICSPLVRPGRPAEAASVISKQLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + IDL L +V GK W Y+D + +DG L D + AA S+
Sbjct: 127 IL---------SSGMIDLKELCLVGGKAAWMAYLDIYCLDADGALFDTALLSAVAAFSHL 177
Query: 117 GIPSVH--------VAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDAT 168
IP V + +E + E + + E + + +P T + + D T
Sbjct: 178 NIPVVSLNDDGRIVLVSEDTVRLKLEKEPVNTEKRKLKLNSLPFSLTCILHKNYILADPT 237
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGL-DPSVILDMISVANFVSRQLMDKLDSEI 227
EEE M + V++ ++ + + K GG L SVI D I +A +++L L+ I
Sbjct: 238 AEEEPIMETIVTVVLDSSHQLVSLNKPGGPVLSHTSVIQDCIGLARRRAKELQSVLNEAI 297
Query: 228 A 228
+
Sbjct: 298 S 298
>gi|380026683|ref|XP_003697074.1| PREDICTED: exosome complex component RRP43-like [Apis florea]
Length = 281
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 12/207 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ +K+EL P A P+ G + ++ P P F + + ++ +++
Sbjct: 53 IGNTTIVCGIKSELAVPKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLIENI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L A IDL L V +GK+ W LY D + I+ DG+++DA A+ A L+ +P
Sbjct: 113 LRNS-----AAIDLKELCVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLNTLTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQMSSAV 179
+ E V I+ + ++F +PV T ++ D T +EES +
Sbjct: 168 IFYNIETG-----HVSINSTKRIKFPIKALPVSITFAIFDNQLLIADPTDDEESLCLGKL 222
Query: 180 SISINRQGHICGMIKRGGVGLDPSVIL 206
+I +N + IC + K GG+ + + L
Sbjct: 223 TIVMNEE-KICCIHKPGGIPISQDIFL 248
>gi|116754658|ref|YP_843776.1| exosome complex RNA-binding protein Rrp42 [Methanosaeta thermophila
PT]
gi|116666109|gb|ABK15136.1| ribosomal RNA-processing protein RRP42 [Methanosaeta thermophila
PT]
Length = 257
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K + G P P++G + + P A P FE E EL+ +
Sbjct: 52 LGKTQVMVGIKIQPGEPFPDAPNRGVIVTNAELVPLASPIFEPGPPNEYGIELARVVDR- 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G +G+ +DL +L +V G+ W ++ID ++ GN++DA AAL +P+
Sbjct: 111 ---GVRESGS-VDLDALCIVPGEKVWIIFIDIHILDDCGNIMDASSLGAIAALLGATVPA 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
E+F Q +P+ TT + G + D ++EE+ + ++
Sbjct: 167 SRFGL-------------GEDF-QLPVRDIPIATTAVEFGDVVLFDPDVDEEAIADAKLT 212
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ G ICGM K G L + ++ +A +R++ +K
Sbjct: 213 VITKADGTICGMQKSGPGMLSEDQVYRIVDIACDNAREIREKF 255
>gi|170039450|ref|XP_001847547.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
gi|167863024|gb|EDS26407.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
Length = 274
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 9/183 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P ++P+ G + ++ SP P + E + S +L
Sbjct: 54 IGNTTVVCGIKAELTPPKPVEPETGFLVPNIEISPLCSPKYRPGPPSEEAQVYSCSLADA 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L SG ++L L + + K+ W LY D + + DG + DA A+ AAL +P
Sbjct: 114 ILN--SGC---VNLKDLCITKEKLVWALYCDLVCLDHDGCVFDASVIALVAALHTLTLPR 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ A+ +DE+ ++ E L S +PV T+ + + D T EEE+ +S ++
Sbjct: 169 MRHNAD--TDEREVLEEEPREALTL--SSIPVTTSFAVLCGRIVADPTAEEEALATSTIT 224
Query: 181 ISI 183
I+I
Sbjct: 225 ITI 227
>gi|339244851|ref|XP_003378351.1| 3' exoribonuclease family, domain 1 [Trichinella spiralis]
gi|316972750|gb|EFV56404.1| 3' exoribonuclease family, domain 1 [Trichinella spiralis]
Length = 309
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 23/223 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKG----KVAIFVDCSPTAEPTFEGRGGEELSAELSSA 56
+G V ASV + G P PD+G K F+ E + + + E +S A
Sbjct: 53 IGEMSVTASVWLDFGTPLETAPDQGMIEFKSRFFISEESDEETSNDVKEAENISRIFKQA 112
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + D L +V G++CW+L +D L++ GNL D A+K AL NT
Sbjct: 113 YY---------SQSAFDRKQLCLVTGRLCWNLKVDLLIMGKGGNLFDVASIAVKMALHNT 163
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
IP V + ++ + + S VP++ T+ G +I+D +E M
Sbjct: 164 IIPQVEASCPKNDTRTINIENDINKGFSLNISNVPMLVTIGIYGTMHIIDMNQKESECMH 223
Query: 177 SAVSISIN-------RQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I I+ R +I G +KRG L S L +I+ A
Sbjct: 224 KIMVIGISGDELEYARVTYI-GSLKRG--ALMNSSFLKVIATA 263
>gi|342877488|gb|EGU78940.1| hypothetical protein FOXB_10540 [Fusarium oxysporum Fo5176]
Length = 247
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 12/224 (5%)
Query: 8 ASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSG 67
A V AE+ P + +P G I + SP P++E LS L+ + +SG
Sbjct: 12 AKVSAEVTVPYSDRPFDGVFTITSELSPMVAPSYEVNRPSLEEVLLSRLLEKTI--RRSG 69
Query: 68 AGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEA 127
A +D SL ++ G+ CW + +D V++ DGNL DA A+ AAL + P + E
Sbjct: 70 A---LDTESLCLIAGQKCWSIRVDLHVLTHDGNLTDAACLAVVAALRHFRKPDSSIEGEN 126
Query: 128 ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK---HYIVDATLEEESQMSSAVSISIN 184
+ P ++ E + P T + G+ +VD EE S + S+N
Sbjct: 127 ITIYTP----AEREPVPLSWLHSPFCVTFSFFGEDGSQVLVDTNWLEEQLRISHCTYSLN 182
Query: 185 RQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ G IC + K GG LD + + A S++L D +DS++A
Sbjct: 183 KHGEICQIAKLGGTSLDAPLFIQCAQGALNRSKELSDLVDSKLA 226
>gi|357618708|gb|EHJ71589.1| hypothetical protein KGM_20827 [Danaus plexippus]
Length = 371
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 7/122 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++A V E+ +P ++P++G + I V+ SP A P FE +L+ L+ L+ C
Sbjct: 50 LGETKILAQVSCEVVQPKQIRPNEGILFINVEISPMAAPQFEANRQTDLTVYLNRLLEKC 109
Query: 61 LLGGKSGAGAGIDLSSL-VVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K IDL SL +VVE KV W L +D V++ DGNL++ A A+L++ P
Sbjct: 110 YKDSKC-----IDLESLCIVVEEKV-WSLRVDIKVLNHDGNLIECASIATLASLAHFKRP 163
Query: 120 SV 121
V
Sbjct: 164 DV 165
>gi|20090627|ref|NP_616702.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina
acetivorans C2A]
gi|29336812|sp|Q8TGX5.1|ECX2_METAC RecName: Full=Probable exosome complex exonuclease 2
gi|19915669|gb|AAM05182.1| tRNA nucleotidyltransferase [Methanosarcina acetivorans C2A]
Length = 266
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 55 LGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W ++ID V++ DGN++DA A AAL T +P+
Sbjct: 115 I--RESGA---IDIKKLCITVGESVWIVFIDVHVLNDDGNIIDASCLAAIAALMTTMVPN 169
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ ++ P +PV T+ K+G +VD +L+EE+ + ++
Sbjct: 170 EQ---QGLGEDVP-----------LAMKEMPVGITIAKIGSKLMVDPSLDEEAVCETKLT 215
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
I + G + GM K G L + + + I +A
Sbjct: 216 IVSSSDGSVAGMQKMGISPLTEAELFEAIDLA 247
>gi|326914227|ref|XP_003203428.1| PREDICTED: exosome complex exonuclease RRP43-like [Meleagris
gallopavo]
Length = 291
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 104/232 (44%), Gaps = 19/232 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAE---LSSA 56
+G+T VI VKAEL P+ +KG + V+ F G GEE A ++
Sbjct: 68 LGNTTVICGVKAELAAPAVDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADV 127
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++ + K L + EGK+ W LY D + + DGN+LDA A+ AAL N
Sbjct: 128 IENSQIIAKE---------DLCIAEGKLAWVLYCDIICLDYDGNILDASTFALLAALKNV 178
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQM 175
+PSV + E EV++ + L PV T+ IVD T EEE
Sbjct: 179 QLPSVTINEETGLS---EVNLKQKNPLVIRKH--PVATSFAIFDDXLLIVDPTAEEEDLA 233
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ V++ + +C + K GG L + + D IS A +++ +D I
Sbjct: 234 TGTVTVVTDEDDRLCSVHKPGGSPLTGAKLQDCISRAITRHKEVKKLIDKVI 285
>gi|213410258|ref|XP_002175899.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
gi|212003946|gb|EEB09606.1| exosome subunit Rrp45 [Schizosaccharomyces japonicus yFS275]
Length = 291
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 14/240 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+ + A++ +P +P G I + +P A P+ E GR ++ L
Sbjct: 51 LGETRVLCHITAQIAKPYPDKPFDGIFTIHTELTPMAHPSLEAGRLSDQ------EVLIS 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ +D SL ++ G+ CW + ++ DGN++DA A+ AAL + P
Sbjct: 105 RLIETSVRRSRALDTESLCILSGQKCWSVRATVHFVNHDGNMVDAACLAVVAALCHYRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSS 177
V V E PE + + +P+ TT G + DAT EEE +
Sbjct: 165 DVTVTGEEVVVHSPEERVP----VPLSVLHMPICTTFFFFHDGSISVTDATAEEEELSTG 220
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
++I++N+ IC K GGV +D + I+ A ++++ ++L ++ A D + E+
Sbjct: 221 TMTITLNKNREICQFFKAGGVPIDQTKIISCAHAAFKNTQEICEQL-KQVLAQDLQKRET 279
>gi|224090167|ref|XP_002308947.1| predicted protein [Populus trichocarpa]
gi|222854923|gb|EEE92470.1| predicted protein [Populus trichocarpa]
Length = 318
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 31/258 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++A++K E+ PS P++G +AI CSP P +S +LS
Sbjct: 67 IGSTTMLAAIKMEVMTPSTESPEEGSIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + G I+L L +V GK W Y+D + +DG L DA + A S++
Sbjct: 127 ISRQVNSGM------INLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAVGAFSHS 180
Query: 117 G-------IPSVHVAAEAASDEQPEVDISDE-------------EFLQFDTSGVPVITTL 156
I +V + + +D+ V +S+E E + S +P T
Sbjct: 181 AFIYYRSLICAVQIPIVSLNDDGKIVLVSEEDDGTKLEEEPVNKEKRKLTLSSIPFSLTC 240
Query: 157 TKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGL-DPSVILDMISVANFV 215
+ + D T EEES M + V++ ++ + K GG L S + D +++
Sbjct: 241 ILHKNYILADPTAEEESIMETLVTVVLDSSSRLVSFYKPGGPVLAQTSAVQDCVALTRQR 300
Query: 216 SRQLMDKLDSEIAAADAD 233
++L D LD I+ + D
Sbjct: 301 VKELQDILDETISGMEID 318
>gi|255075435|ref|XP_002501392.1| predicted protein [Micromonas sp. RCC299]
gi|226516656|gb|ACO62650.1| predicted protein [Micromonas sp. RCC299]
Length = 291
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 12/241 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V A+L PS + ++G + I V+ SP A P FE GR GE+ + EL+ L+
Sbjct: 53 LGDTRVLAVVSAKLEPPSGARGNEGTITINVEFSPMASPNFEPGRPGEQ-AQELALVLER 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ ++GA +D+ SL V+ G+ W + D V+ + GN+ A A AAL + P
Sbjct: 112 AI--RETGA---VDVESLCVLAGRRVWHVRCDVHVLDACGNIAGAASLAADAALLSFRRP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMS 176
V+ + D+ E + +PV T + I D T+ EE +
Sbjct: 167 EATVSPDTQLITVHPADV--REPVPLALHHLPVAITFGYFAEQDGLVIADPTVNEEMVIG 224
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
S + + +N +C + G V + PS I + +A+ +S+ L L AA + + D+
Sbjct: 225 SELVVVLNAHDELCAVRYGGEVAVKPSEISRCVRIASRISKDLTKDLKKAHAAWEVERDK 284
Query: 237 S 237
Sbjct: 285 R 285
>gi|242007204|ref|XP_002424432.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
gi|212507832|gb|EEB11694.1| Exosome complex exonuclease RRP43, putative [Pediculus humanus
corporis]
Length = 276
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 12/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK EL +P A PD+G + VD P ++ + + E + +
Sbjct: 53 IGNTAVVCGVKLELAKPKAETPDQGYLIPNVDLPPLCSGQYQPGPPCDYAQEATKFVNEI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL + IDL +L +V ++ W +Y+D + ++ DGNLLDA AA AAL T +P
Sbjct: 113 LLESQC-----IDLKALCIVPDRLAWVIYLDIICLNQDGNLLDAALAAGIAALKVTTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAV 179
V E+ E ++ + Q + +P+ TT+ ++D T+EEES S +
Sbjct: 168 VIYNVESG-----EKVVNPLKRQQLNVKKLPLSTTIAVFKSDCLLIDPTVEEESFSSGTI 222
Query: 180 SISINR-QGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
SI I G ICG+ + G L PS I I+ A ++ + + + + I
Sbjct: 223 SIVIEADSGDICGIHQPGTEPLKPSEIDFCITQAQVKTKAVAELIKTAI 271
>gi|325088441|gb|EGC41751.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H88]
Length = 293
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 16/237 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + + G + V+ + A P +E EL ++L L
Sbjct: 51 LGKTSVVVRISAEVTKPRSERENDGIFTVSVELNDMASPAYETGRQSELESQLVRTLDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D V+ SDG L+D+ AI L + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V + +PE + + + +P+ TT G+ ++DAT +EE+ +
Sbjct: 166 AVVREGRVTVYRPEERVPS----PLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGS 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADED 235
+ I++++ G I K G DP L MIS + ++ K S+ +A +ED
Sbjct: 222 LIIALDKTGEIALYTKPDGTPGDP---LSMISCSTVALAKI--KAMSKFISAKLEED 273
>gi|295664845|ref|XP_002792974.1| exosome complex exonuclease RRP45 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278495|gb|EEH34061.1| exosome complex exonuclease RRP45 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 295
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + G + V+ + P F+ E+ +L+ L
Sbjct: 51 LGKTSVVVRISAEVTKPHPERENDGIFTVVVELNDMTSPAFKTGWQSEMETQLARILDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D VI SDG L+D+ AI AL + +
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHIRADVHVIDSDGGLVDSCCLAIMTALLHFRL-- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFL--QFDTSGVPVITTLTKV--GKHYIVDATLEEESQMS 176
+EA E + S EE + + + +P+ TT G+ ++DA +EE+
Sbjct: 164 ----SEAIVREGRVIVFSPEERVPSPLNLTKLPLSTTFNIYDEGRIIVLDAVSKEEAVSD 219
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
+ I++N+ G + IK G DP L MIS +N
Sbjct: 220 GNLIIALNKTGELALYIKSDGTPADP---LSMISCSN 253
>gi|225711778|gb|ACO11735.1| Exosome complex exonuclease RRP43 [Caligus rogercresseyi]
Length = 279
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 12/227 (5%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGE--ELSAELSSALQH 59
G T VI + ++ P KG + VD P G E + L+ +
Sbjct: 58 GHTTVICGITLQIASLDEETPTKGYIVPHVDLPSMCHPRIYKSKGPTAEEAMILTKFIMD 117
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+L + +D L +V G++ W L ID ++ DGNL DAL A+ AL + P
Sbjct: 118 VILNSEV-----VDPKDLCIVPGEIVWVLKIDLTCLNQDGNLRDALVTALILALKSLRFP 172
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSA 178
V V+ +A +++ ++++ ++E +PV ++ + G+ +VD T EEE+ + +
Sbjct: 173 KV-VSYKAEDEDKTQINVFEKEHSSLRLKNIPVSVSIAVMEGERLLVDPTDEEETFATDS 231
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVAN---FVSRQLMDK 222
+++ +N + +C + K GG + ++ +I +A R+L++K
Sbjct: 232 ITVVLNAEEELCYLSKNGGEPIFDELMNKVIDLARAQALTVRKLINK 278
>gi|297527571|ref|YP_003669595.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
gi|297256487|gb|ADI32696.1| 3' exoribonuclease [Staphylothermus hellenicus DSM 12710]
Length = 285
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 109/213 (51%), Gaps = 12/213 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VI VK E+G P + +P++G + + + P A PTFE +E + E + +
Sbjct: 58 LGNTFVITGVKLEIGTPYSDRPNEGVLQVHAEFVPLASPTFEPGPPDENAIETARVIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ I L LVV+ GK W ++ D +I GN++D + AL+ T IP
Sbjct: 118 LREPKA-----IRLEDLVVIPGKKVWLIFNDLYLIDHYGNIIDTGMLSTMLALNMTKIPR 172
Query: 121 VHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
+ V+ E DE +D + +E L + + V V TL + IVD ++EE + S +
Sbjct: 173 I-VSIE---DENVVIDKTVKEAPLPLNLNVVTV--TLGIIDDIIIVDPNIDEELVVDSRI 226
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ +I+ I G+ K G G+ P +I ++ +A
Sbjct: 227 TFAIDETNRIVGIQKMGMKGIKPKMIDQLVDIA 259
>gi|315427142|dbj|BAJ48757.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
gi|315427161|dbj|BAJ48775.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
gi|343485776|dbj|BAJ51430.1| exosome complex component RRP42 [Candidatus Caldiarchaeum
subterraneum]
Length = 271
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 24/229 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ +K E+G P +P++G + + P A TFE +E + ELS +
Sbjct: 54 LGKTKILTGIKVEVGTPYPDRPNEGVFTVNAELLPLASKTFEPGPPDERAIELSRIVDRV 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ I++ L +VEG+ + ++ID V+ DGN DA + AAL +P
Sbjct: 114 IRESKA-----IEVEKLCIVEGQKVYMIFIDCYVLDYDGNYFDASVLSAVAALRTMTLPV 168
Query: 121 VHVA---AEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSS 177
V EA E+ ++ +PV T+ + IVD EE +
Sbjct: 169 YRVVDGRVEAVPGEK----------MKLPMRTLPVSVTMALIRDKIIVDPLPAEEDVADT 218
Query: 178 AVSISINRQGHICGMIKRGGVGLDP-SVILDMISV----ANFVSRQLMD 221
V+I + G + I++ GL P ++ +M+ + +N + R+L++
Sbjct: 219 VVTIGYDSDG-VLSAIQKSSPGLLPVNMFKEMVKIGLDASNMLRRRLVE 266
>gi|170056939|ref|XP_001864258.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
gi|167876545|gb|EDS39928.1| exosome complex exonuclease RRP43 [Culex quinquefasciatus]
Length = 274
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 9/183 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P ++P+ G + ++ SP P + E + S +L
Sbjct: 54 IGNTTVVCGIKAELAPPKPVEPETGFLVPNIEISPLCSPKYRPGPPSEEAQVYSCSLADA 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L SG ++L L + + K+ W LY D + + DG + DA A+ AAL +P
Sbjct: 114 ILN--SGC---VNLKDLCITKEKLVWALYCDLVCLDHDGCVFDASVIALVAALHTLTLPR 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ A+ +DE+ ++ E L S +PV T+ + + D T EEE+ + ++
Sbjct: 169 MRHNAD--TDEREVLEEEPREALTL--SSIPVTTSFAVLCGRIVADPTAEEEALATCTIT 224
Query: 181 ISI 183
I+I
Sbjct: 225 ITI 227
>gi|393247723|gb|EJD55230.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 285
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 21/239 (8%)
Query: 1 MGSTD-VIASVKAELGRPSAMQPDK---GKVAIFVDCSPTAEPTFEGRGGE--ELSAELS 54
+G T+ VIAS++A++ RP QPD+ G + I + SP A +EG G E E++
Sbjct: 51 LGKTNRVIASIEAKMVRP---QPDRLFEGIITIHSELSPMASSEYEGGYGRPSEQEVEIT 107
Query: 55 SALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALS 114
L L +S A ID SL V+ G+ W L + ++ GN+LD A AL
Sbjct: 108 RMLDKVL--RRSDA---IDKESLCVLAGQRVWHLRLTFHFLADAGNMLDCACLAGITALK 162
Query: 115 NTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY--IVDATLEEE 172
+ P V V + + PE + L P+ T ++D T E+
Sbjct: 163 HFRRPEVEVVGDEVTIHAPE----ERAPLPLAIHHTPLCLTFALFDNDLPPLLDPTYLEQ 218
Query: 173 SQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
+ S +SI++N Q +C + K GGV L+ IL ++ + ++L D+L + +AD
Sbjct: 219 TLCSGTMSIALNAQRELCVVQKAGGVPLEADAILKLLEIGVLKVKEL-DQLVEQALSAD 276
>gi|424814254|ref|ZP_18239432.1| RNase PH-related exoribonuclease [Candidatus Nanosalina sp.
J07AB43]
gi|339757870|gb|EGQ43127.1| RNase PH-related exoribonuclease [Candidatus Nanosalina sp.
J07AB43]
Length = 262
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 16/225 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + ++ P + +P+ G + + +P A+ FE E EL+ +
Sbjct: 48 IGDTKVLVGISIDVEEPYSDRPESGTIVTNAELAPMADRDFESGPPREPGVELARVVDRG 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ IDL L + G+ + ++ID V+++DGNL+D A AAL + +P+
Sbjct: 108 IRESEA-----IDLEELCIEPGEKVYTVFIDIHVLNNDGNLIDCSSLAAMAALKSGHLPA 162
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ + +Q DI + + PV T+ K+ + D T EE+ + ++
Sbjct: 163 YSTEERSLNRDQKWKDI--------ELTTEPVTATVCKINGEMVFDTTREEQEAQEARLT 214
Query: 181 ISINRQGHICGMIKRGGVGLDPSVI---LDMISVANFVSRQLMDK 222
+SI++ G + M K G I +D + R L+DK
Sbjct: 215 VSIDQDGQVVAMQKGGTNSFSSDEISQAMDKVKDKTQEFRSLIDK 259
>gi|225559371|gb|EEH07654.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus G186AR]
Length = 293
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 16/237 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + + G + V+ + A P +E EL ++L L
Sbjct: 51 LGKTSVVVRISAEVTKPRSERENDGIFTVSVELNDMASPAYETGRQSELESQLVRTLDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D ++ SDG L+D+ AI L + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHVRADVHIVDSDGGLVDSCCLAIMTGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V + +PE + + + +P+ TT G+ ++DAT +EE+ +
Sbjct: 166 AVVREGRVTVYRPEERVPS----PLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGS 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADED 235
+ I++++ G I K G DP L MIS + ++ K S+ +A +ED
Sbjct: 222 LIIALDKTGEIALYTKPDGTPGDP---LSMISCSTVALAKI--KAMSKFISAKLEED 273
>gi|294461855|gb|ADE76485.1| unknown [Picea sitchensis]
Length = 302
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 30/246 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G T ++A VK E+ P+A D+G++A+ CSP P +S +LS+
Sbjct: 64 IGHTTMLAGVKLEVMTPAAEALDEGRIAVDFQMPPICSPDVRPGRPVDAAAVISEQLSNV 123
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L SG I+L L + +G+ W Y+D + +DG L DA A A ++
Sbjct: 124 L------ASSGV---INLKELSISKGQAAWMAYLDIYCLDADGALFDAALLAAIGAFAHL 174
Query: 117 GIPSVHVAAEAA-------------SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY 163
P+V + E + EQP+V E+ Q VP T KH
Sbjct: 175 RFPAVSMTEEGKVIPLSGDTVLEDGNKEQPKVQ---EQRQQLTLGKVPFSLTCMLYKKHI 231
Query: 164 IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGL-DPSVILDMISVANFVSRQLMDK 222
+ D T EEES + +++ ++ G + K GG L S I D +++ + ++L
Sbjct: 232 LADPTAEEESVFQTTITVVLDPSGRLVSFYKPGGSALASTSTIQDCVALTKYRVKELQKI 291
Query: 223 LDSEIA 228
LD ++
Sbjct: 292 LDEALS 297
>gi|190345706|gb|EDK37633.2| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
6260]
Length = 312
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 15/243 (6%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G+T + V AE+ +P +P +G I + SP A P FE + +S ++ +
Sbjct: 60 GNTKLAVRVSAEIAKPYDDRPFEGIFTINTEISPMASPQFENGKNSDDEVLVSRIVEKAI 119
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
+S A +DL SL +V G W + D + DG L+DA + AL + P V
Sbjct: 120 --RRSNA---LDLESLCIVAGSKVWAVRADVNFLDFDGGLIDACALGVMVALQHFRKPDV 174
Query: 122 HVAAEA----ASDEQPEVDISDEE------FLQFDTSGVPVITTLTKVGKHYIVDATLEE 171
+ E+ + DE+ V +S F F+ S + + ++DAT EE
Sbjct: 175 SIDGESIVVHSMDERQPVALSILHVPLCVSFSFFNPSDIEETVKGDASDEIAVMDATHEE 234
Query: 172 ESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
E ++ +++N+ I + K GG+ +D V++D+ A V+ +L D++ + D
Sbjct: 235 ELVRDGSLVVTLNKNREILQVSKSGGLPIDAVVLMDLCRKAYTVTSELTDRVKEILKKDD 294
Query: 232 ADE 234
A+
Sbjct: 295 AER 297
>gi|156553642|ref|XP_001600402.1| PREDICTED: exosome complex component RRP43-like [Nasonia
vitripennis]
Length = 277
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 14/215 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T V+ +KAEL P A PD G + VD SP + F G GEE + ++
Sbjct: 53 IGNTSVVCGIKAELASPKAETPDCGFIIPNVDLSPLSSSKFRPGPPGEETQCA-TKLVER 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ + +DL L + + K+ W LY D + I DG+++DA A+ AA +P
Sbjct: 112 ILVNSE-----AVDLKDLCIHKDKLVWVLYCDLICIDYDGSVIDACIGALVAAFKILTLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQMSSA 178
V E + + + D+ + +P TT ++ D T +EE S
Sbjct: 167 VVEYTIETGATK-----VDDKNRISVPLRQLPASTTFAIFDNQLLITDPTEDEEKLALST 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
++I N + +C + K GG+ + ++ +S A
Sbjct: 222 LTIVFNEKS-MCMVHKSGGIPMSQKLLSKCVSKAK 255
>gi|297739657|emb|CBI29839.3| unnamed protein product [Vitis vinifera]
Length = 311
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 24/251 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEE---LSAEL 53
+G T ++A+VK E+ P PD+G +AI CSP P GR EE +S +L
Sbjct: 67 IGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRP---GRPAEEAPVVSKQL 123
Query: 54 S-SALQHC-LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKA 111
S + L+H ++ SG I+L L +V GK W Y+D + +DG+L DA A A
Sbjct: 124 SDTILRHVNVVTSFSGM---INLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVA 180
Query: 112 ALSNTGIPSVHVAAEAASDE--------QPEVDISDEEFLQFDTSGVPVITTLTKVGKHY 163
A S+ IP V + E + E + ++ + S +P T +
Sbjct: 181 AFSHLRIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYI 240
Query: 164 IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGL-DPSVILDMISVANFVSRQLMDK 222
+ D T EEES M + V++ ++ G + + K GG L S + D I++ ++L
Sbjct: 241 LADPTAEEESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSI 300
Query: 223 LDSEIAAADAD 233
L+ I+ + D
Sbjct: 301 LNEAISDMEVD 311
>gi|349603366|gb|AEP99224.1| Exosome complex exonuclease RRP43-like protein, partial [Equus
caballus]
Length = 197
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 13/158 (8%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
I L + GK+ W LY D + + DGN+LDA A+ AAL N +P V ++ E A
Sbjct: 40 IQKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTISEETA--- 96
Query: 132 QPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAVSISINRQGHIC 190
EV++ + FL T PV T+ IVD T EEE + +++ ++ +G +C
Sbjct: 97 LAEVNLKKKSFLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLC 154
Query: 191 GMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+ K GG GL + + D +S A V+R +LMD++
Sbjct: 155 CLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 190
>gi|240282302|gb|EER45805.1| exosome complex exonuclease RRP45 [Ajellomyces capsulatus H143]
Length = 293
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 16/237 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + + G + ++ + A P +E EL ++L L
Sbjct: 51 LGKTSVVVRISAEVTKPRSERENDGIFTVSMELNDMASPAYETGRQSELESQLVRTLDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D V+ SDG L+D+ AI L + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V + +PE + + + +P+ TT G+ ++DAT +EE+ +
Sbjct: 166 AVVREGRVTVYRPEERVPS----PLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGS 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADED 235
+ I++++ G I K G DP L MIS + ++ K S+ +A +ED
Sbjct: 222 LIIALDKTGEIALYTKPDGTPGDP---LSMISCSTVALAKI--KAMSKFISAKLEED 273
>gi|212532847|ref|XP_002146580.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
gi|210071944|gb|EEA26033.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
Length = 294
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 16/224 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ + AE+ +P + G I ++ + P +E E +S L
Sbjct: 51 LGQTSLVVRISAEVSKPRDDRQSDGTFLIAMELTAMGSPAWENLRQSEFETYVSRVLDRV 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + +D SL +++GK CW++ D V + DGNL+D+ I A L + P
Sbjct: 111 IRHSNA-----LDTESLCILKGKSCWNIRADVHVTNFDGNLIDSACIGIMAGLQHFRRPD 165
Query: 121 VHVAAEAASDEQPEV-DISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSS 177
+ V D Q V I++ + + + P+ T GK I+DAT +EE
Sbjct: 166 IEV-----KDGQVTVFGINERVPVPLNITHKPLAITFQSFHEGKVLILDATRKEEQASKG 220
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
+ I++N G C + K G P L++I+ N +++++
Sbjct: 221 DLIIALNNTGETCAVYKSAG---SPVSALEVINKTNLAQQKVLE 261
>gi|389584933|dbj|GAB67664.1| exosome complex exonuclease, partial [Plasmodium cynomolgi strain
B]
Length = 280
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 21/235 (8%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L PS PD+G + + +DC + R ++ +SS + L
Sbjct: 49 NNVICGIKLSLLTPSLDAPDEGVINLQIDCPASVAA---NRIKKDHLQIMSSIIYDLCLK 105
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
ID L ++ K W + I +V+++ G LLD + AI AL +T +P V
Sbjct: 106 N------NIDRKKLCILPSKFVWGVDISVMVLNAGGGLLDIISMAIYVALKDTIVPVV-- 157
Query: 124 AAEAASDEQP----------EVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
A+ DE EV+I + + F VP+ ++ ++ Y+ D + EE
Sbjct: 158 KAKRKIDESNTFHHTKCADYEVEIIENQKTNFPYENVPICVSIGEINNKYVYDMSKVEEE 217
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ + +++ G K G+ ++ + IL+M ++ +S L +K++ IA
Sbjct: 218 LVENIFVVAVTSSGKCVAFHKLYGISMEIASILNMTENSSKISHHLFEKINEAIA 272
>gi|193664372|ref|XP_001942983.1| PREDICTED: exosome complex exonuclease RRP43-like [Acyrthosiphon
pisum]
Length = 267
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 19/217 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ +KAELG P A PD G + + ++ CS P ++++ L+
Sbjct: 52 IGNTAVVCGIKAELGVPKAEAPDIGYLLVNIELPSLCSKKIRPGIPCDEAMQMTSFLNEV 111
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+C + +DL L + K+ W L D ++ DG++LDA A+ +AL
Sbjct: 112 CNNCKI---------LDLQQLCISVDKLVWILSCDIYCLNYDGSVLDACLIALLSALQTV 162
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
IP E D++ E E ++ + +PV +T + YI+ EEE Q+
Sbjct: 163 KIP------EVKYDKETEETTVIENYIPLKVNSLPVSSTFGVFNEKYILADPTEEEEQLC 216
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
+ + I + K GG + S I + I AN
Sbjct: 217 VSKLTVVTNGSLIFSLHKPGGEFIKDSQIQNCIKHAN 253
>gi|340709348|ref|XP_003393272.1| PREDICTED: exosome complex component RRP43-like [Bombus terrestris]
Length = 278
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 12/201 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P A P+ G + ++ P P F + + ++ +++
Sbjct: 53 IGNTTVVCGIKAELAAPKAESPECGYIVPNIELPPLCSPKFRPGPPSDQAQVITKLIENI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L A IDL L V +GK+ W LY D + I+ DG+++DA A+ A LS +P
Sbjct: 113 LRNS-----AAIDLKDLCVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLSTLTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQMSSAV 179
E V ++ + ++F +PV T +V D T +EES +
Sbjct: 168 TLYNVETG-----RVSVNSTKRIRFLVKALPVSITFAIFNDQLLVADPTDDEESLCLGRL 222
Query: 180 SISINRQGHICGMIKRGGVGL 200
+I +N + IC + K GG+ +
Sbjct: 223 TIVMNEE-KICCIHKPGGIPI 242
>gi|146420206|ref|XP_001486060.1| hypothetical protein PGUG_01731 [Meyerozyma guilliermondii ATCC
6260]
Length = 312
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 111/243 (45%), Gaps = 15/243 (6%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G+T + V AE+ +P +P +G I + SP A P FE + +S ++ +
Sbjct: 60 GNTKLAVRVLAEIAKPYDDRPFEGIFTINTEISPMASPQFENGKNSDDEVLVSRIVEKAI 119
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
+S A +DL SL +V G W + D + DG L+DA + AL + P V
Sbjct: 120 --RRSNA---LDLESLCIVAGSKVWAVRADVNFLDFDGGLIDACALGVMVALQHFRKPDV 174
Query: 122 HVAAEA----ASDEQPEVDISDEE------FLQFDTSGVPVITTLTKVGKHYIVDATLEE 171
+ E+ + DE+ V +S F F+ S + + ++DAT EE
Sbjct: 175 SIDGESIVVHSMDERQPVALSILHVPLCVSFSFFNPSDIEETVKGDASDEIAVMDATHEE 234
Query: 172 ESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
E ++ +++N+ I + K GG+ +D V++D+ A V+ +L D++ + D
Sbjct: 235 ELVRDGSLVVTLNKNREILQVSKSGGLPIDAVVLMDLCRKAYTVTSELTDRVKEILKKDD 294
Query: 232 ADE 234
A+
Sbjct: 295 AER 297
>gi|350425266|ref|XP_003494065.1| PREDICTED: exosome complex component RRP43-like [Bombus impatiens]
Length = 278
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 12/201 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P A P+ G + ++ P P F G A++ + L
Sbjct: 53 IGNTTVVCGIKAELAAPKAESPECGYIVPNIELPPLCSPKFRP-GPPSDQAQVITKLVEN 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L A IDL L V +GK+ W LY D + I+ DG+++DA A+ A LS +P
Sbjct: 112 ILRN----SAAIDLKDLCVYKGKLVWVLYCDLVCINYDGSIIDACIGALTATLSTLTLPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQMSSAV 179
E V ++ + ++F +PV T +V D T +EES +
Sbjct: 168 TLYNVETG-----RVSVNSTKRIRFLVKALPVSITFAIFNDQLLVADPTDDEESLCLGRL 222
Query: 180 SISINRQGHICGMIKRGGVGL 200
+I +N + IC + K GG+ +
Sbjct: 223 TIVMNEE-KICCIHKPGGIPI 242
>gi|380025250|ref|XP_003696390.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP45-like [Apis florea]
Length = 411
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 10/193 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA V ++ +P +P++G + I V+ +P A F+ E+S +S L+ C
Sbjct: 50 LGQTRVIAQVTCDIQQPKTSRPNEGMLHINVELNPMAAQHFDSGRQSEISILISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K IDL SL ++ K W+L +D VI+ D NL+D A AALS+ P
Sbjct: 110 YQDSKC-----IDLESLCIIADKKVWNLRVDINVINHDXNLIDCASIATLAALSHFHRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPV-ITTLTKVGKHYIVDATLEEESQMSSAV 179
V E P S+++ L PV ++ +T + ++D T EE + +
Sbjct: 165 VTSNGEDII-VHP---FSEKDPLPLTLYHYPVCVSFITFESGNTVMDPTYLEERIGVAQL 220
Query: 180 SISINRQGHICGM 192
++ IN +C +
Sbjct: 221 TLGINSYRELCSL 233
>gi|124514000|ref|XP_001350356.1| exosome complex exonuclease, putative [Plasmodium falciparum 3D7]
gi|23615773|emb|CAD52765.1| exosome complex exonuclease, putative [Plasmodium falciparum 3D7]
Length = 477
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 17/217 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + +E+ +P + +G + I +D E + E+ + +
Sbjct: 47 IGFTKVICKITSEIVKPHDRKLKEGILKINLDIDNFIEDNENSDNMSDECLEIKNIIDRV 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L I+ SL ++ GK W + I+ +VI +DGNL DA + L +
Sbjct: 107 L-----KTSNIINFESLCIIPGKKVWCICINIMVIENDGNLTDACYLSAYCGLVHFKNHQ 161
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGV---PVITTLTKVGKH--YIVDATLEEESQM 175
V V I D+E + + + P++TT +H ++D L EE M
Sbjct: 162 VRVIKNGDI-------IIDKEEINYSPLSILNSPIVTTFAYYEEHDVCLIDPCLHEEEFM 214
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
SS +SI++N+ G++ ++K GG+ L S I++ I +A
Sbjct: 215 SSKISIALNKNGNLISLLKPGGIPLACSHIMESIEIA 251
>gi|288930698|ref|YP_003434758.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
gi|288892946|gb|ADC64483.1| 3' exoribonuclease [Ferroglobus placidus DSM 10642]
Length = 259
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 20/227 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P P+KG + + P A PTFE +E + EL+ +
Sbjct: 53 LGNTQVLVGVKMQPGEPFPDAPNKGIIITNAELVPLASPTFEPGPPDENAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DL L + EG+ W ++ID + DGNLLDA AAL NT +P+
Sbjct: 113 IRESEA-----VDLEKLCIEEGEKVWLIFIDIWALDDDGNLLDASALGAIAALLNTTVPA 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
E D +PV T V +VD +E S + ++
Sbjct: 168 ERF--EVGDD------------FPLPVRDLPVAITSLIVENKILVDPIKDETSVAKNFLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
I+ + + +I + K G L + I ++ +R++ KL +E+
Sbjct: 214 ITTDSEDNIVAIQKSGSYLLPEEKFYEAIELSIRKAREVR-KLLAEV 259
>gi|398404486|ref|XP_003853709.1| hypothetical protein MYCGRDRAFT_108491 [Zymoseptoria tritici
IPO323]
gi|339473592|gb|EGP88685.1| hypothetical protein MYCGRDRAFT_108491 [Zymoseptoria tritici
IPO323]
Length = 292
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 15/216 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ ++ AE+ P + G I + SP A P FE ++ LS L+
Sbjct: 51 LGKTRVMVAISAEVIAPYTDRKFDGVFTISTELSPIASPAFEVGRQDQTEILLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL ++ G C+ + D V+ DGN++DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCIIAGSKCFHIRADIHVLDHDGNIIDAACVALVAALMHFRRPD 165
Query: 121 VHVAAEAAS----DEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+ + E + E+ V LQ + T+ + G+ + DATL EE
Sbjct: 166 IEIHGEEVTVFSLQEREPVK------LQMQHQPFCITTSYYESGEVMLQDATLLEEHCRE 219
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
V +SINR G +C + K GG +D +L+ + A
Sbjct: 220 GEVVVSINRFGEVCQIAKYGGAPVDGLSVLNCTTAA 255
>gi|261190048|ref|XP_002621434.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239591262|gb|EEQ73843.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239606325|gb|EEQ83312.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327353102|gb|EGE81959.1| exosome complex exonuclease RRP45 [Ajellomyces dermatitidis ATCC
18188]
Length = 293
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 14/214 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AE+ +P + + G + V+ + A P +E EL +L L
Sbjct: 51 LGKTSVVVRISAEVTKPRPERENDGIFTVSVELNDMASPAYETGRQSELETQLVRTLDRI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + GK CW + D V+ SDG L+D+ AI L + +P
Sbjct: 111 I--RRSNA---LDTESLCIAAGKNCWHVRADVHVVDSDGGLVDSCCLAIMTGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V + +PE + + + +P+ TT G+ ++DAT +EE+ +
Sbjct: 166 AVVRDGRVTVYRPEERVPS----PLNLTKLPLSTTFNMYDEGRIIVLDATSKEEAVSEGS 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++++ G I K G DP L MIS +
Sbjct: 222 LIIALDKTGEISLYTKPDGTPGDP---LSMISCS 252
>gi|124513540|ref|XP_001350126.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
gi|23615543|emb|CAD52535.1| exoribonuclease PH, putative [Plasmodium falciparum 3D7]
Length = 278
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 107/238 (44%), Gaps = 17/238 (7%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L P D+G V + +DC + R ++ +++ + + +
Sbjct: 49 NNVICGIKLSLITPDVDTYDEGNVNLQIDCPASVAA---NRIKKDHLQTMTTIIYNLCIK 105
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
I+ L ++ GK W + I+ +V+++ G LLD + AI AL +T P V
Sbjct: 106 N------NINKKILCILPGKFAWSVDINVMVLNAGGGLLDIISIAIYVALKDTFFPIVKP 159
Query: 124 AAEA--------ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
E S++ +++I + E + F +P+ ++ ++ YI D + EE +
Sbjct: 160 KKEIEEENTFHEISNKDYQLEIVENEHVNFPYENIPICISIGEINNKYIYDMSKVEEELV 219
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
+ ++I +G K G+ ++ S IL++ ++ +S L DK+ + A+
Sbjct: 220 QNIFVVAITSKGKCVAFHKLYGISMEISSILNITENSSKISHTLFDKIHQALDKIHAN 277
>gi|340371255|ref|XP_003384161.1| PREDICTED: exosome complex component RRP45-like [Amphimedon
queenslandica]
Length = 410
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 17/241 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V A V E+ P +P G + V SP A P ++ G L+ + L C
Sbjct: 54 IGETRVQACVGCEVVVPRPQRPTDGLLYFNVLPSPMAAPNYDI-GKSSLTMRVERLLDRC 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S +D SL ++ G+ W + +D +++ GN+ D A AL + P
Sbjct: 113 FKESRS-----LDTESLCIIAGQKVWSIRVDIHILNDSGNITDCCVMASFCALKHCRRPY 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
V V+ E A+ +S+ E + + P+ T + G + +VD ++EEE ++
Sbjct: 168 VTVSGEHATIH----PVSEREPVPLNIHHTPICITFGFLSEGNYLLVDPSIEEEKVLTGH 223
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA----NFVSRQLMDKLDSEIAAADADE 234
+ I +N IC M + GV L ++ +A N +++ + + A + DE
Sbjct: 224 LYIVMNIHREICTM-QLEGVALQHEEVVKCTKIAMTKVNELNKSINKYMGIRTNAKNMDE 282
Query: 235 D 235
D
Sbjct: 283 D 283
>gi|268573886|ref|XP_002641920.1| C. briggsae CBR-EXOS-9 protein [Caenorhabditis briggsae]
Length = 434
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 29/203 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE----GRGGEELSAELSSA 56
+G+T VIA+V A++ PS+M+P KG + I VD SP A + E G G EL L
Sbjct: 50 IGNTKVIAAVSAQIAEPSSMRPHKGVIIIDVDLSPMANVSNEHDRLGSKGMELIRLLELI 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ ID+ SL + GK W + +D ++ DG+LLD A AL +
Sbjct: 110 IRD---------SRCIDVESLCIRAGKEIWKVRVDVRILDEDGSLLDCACLAAITALQHF 160
Query: 117 GIPSV-----HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATL 169
P+V H + ++ P + + +P+ TT L G+ ++D T
Sbjct: 161 KRPNVTLEPHHTLIYSEYEKAP---------VPLNIYHMPICTTIGLLDKGQMVVIDPTE 211
Query: 170 EEESQMSSAVSISINRQGHICGM 192
+E + + ++ ++ N++ +C +
Sbjct: 212 KEAACLDGSIVVACNKRREVCAL 234
>gi|326469540|gb|EGD93549.1| 3' exoribonuclease [Trichophyton tonsurans CBS 112818]
gi|326478933|gb|EGE02943.1| exosome complex exonuclease RRP45 [Trichophyton equinum CBS 127.97]
Length = 292
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 116/240 (48%), Gaps = 18/240 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AEL P + G + V+ + A P +E EL LS L
Sbjct: 51 LGKTAVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G++CW++ D ++ DG L+DA AI A L + +P
Sbjct: 111 V--RRSNA---LDTESLCIAKGRICWNVRADIHILDCDGGLIDASCLAIMAGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSS 177
V D + V ++E+ +Q + + +P+ T L GK ++DAT EE+
Sbjct: 166 STV-----RDGEVTVFTTEEKVPVQLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEG 220
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
++ +++++ G I K G DP +++ ++A R+L +++ AA +ED+
Sbjct: 221 SLVVALDKTGEIALYSKPDGAPADPVNMVNCSTLALEKVREL-----NKLLAARLEEDKQ 275
>gi|302654106|ref|XP_003018865.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Trichophyton verrucosum HKI 0517]
gi|291182546|gb|EFE38220.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Trichophyton verrucosum HKI 0517]
Length = 292
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 116/240 (48%), Gaps = 18/240 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AEL P + G + V+ + A P +E EL LS L
Sbjct: 51 LGKTAVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G++CW++ D ++ DG L+DA AI A L + +P
Sbjct: 111 V--RRSNA---LDTESLCIAKGRICWNVRADIHILDCDGGLIDASCLAIMAGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSS 177
V D + V ++E+ +Q + + +P+ T L GK ++DAT EE+
Sbjct: 166 STV-----RDGEVTVFTTEEKVPVQLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEG 220
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
++ +++++ G I K G DP +++ ++A R+L +++ AA +ED+
Sbjct: 221 SLVVALDKTGEIALYSKPDGAPADPVNMVNCSTLALEKVREL-----NKLLAARLEEDKQ 275
>gi|452823313|gb|EME30324.1| exosome complex component RRP45 [Galdieria sulphuraria]
Length = 389
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 19/234 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTA------EPTFEGRGGEEL--SAE 52
+G T V +S AE+ P+ +P +G V VD SP A E + GR L +AE
Sbjct: 50 LGKTKVFSSAIAEVVEPTIDRPAEGFVTFSVDLSPMASENLMLEYLYSGRTSSTLEEAAE 109
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAA 112
+ LQ + ++ ID +L +V G W + +D V+ GN+LDA A A+
Sbjct: 110 IVRFLQQIIRENQA-----IDTETLCIVAGVQVWAIRVDIHVLDHCGNVLDACCMAAVAS 164
Query: 113 LSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLE 170
L + P V V + I + E + +P+ + G +D +++
Sbjct: 165 LLHMRKPVVTVVGKDVFIH----GIDEREPVPLTVHHLPISVSFGIFLDGDLIAIDPSIQ 220
Query: 171 EESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
EES M +SI++N IC K GG ++ S+I S A + ++ +L+
Sbjct: 221 EESVMEGTLSIAVNAHKEICAFRKAGGASIETSLIFKNASYAYLRATEVTVQLE 274
>gi|443926780|gb|ELU45348.1| Opa-interacting protein OIP2 [Rhizoctonia solani AG-1 IA]
Length = 294
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 13/215 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G + ++ VKAE+ P +P +G + +D CSP +P + LS +++
Sbjct: 67 IGDSTIVCGVKAEIAEPDLERPSEGFIVPNLDLPAICSPKFKPGPPAEEAQMLSEKIT-- 124
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+L + + ID +L + GK W +Y+D + I+ DGN+LDA A+ AAL N
Sbjct: 125 ----ILTKLTYSSNAIDPKTLCIHPGKAAWVIYVDAVCINYDGNILDATMLAVVAALQN- 179
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK-HYIVDATLEEESQM 175
GI + + S E L + +PV + + H I D + EE +
Sbjct: 180 GILPARIPVPTYDLDTGRTTCSRTETLPLALTHMPVTISFGIFDRAHLISDPSSFEEPLL 239
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMIS 210
+A++++I+ G I + G PS L+ I+
Sbjct: 240 DAAITVTIDVSSGALGGINQVGFSA-PSATLETIT 273
>gi|326430620|gb|EGD76190.1| hypothetical protein PTSG_00897 [Salpingoeca sp. ATCC 50818]
Length = 304
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 15/218 (6%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPT---FEGRGGEELSAELSSALQHC 60
TDV+ VK E+ P+ +PD+G + + S +A T + R ++++ L +
Sbjct: 71 TDVLVGVKVEVATPTDDRPDEGMLEFSIS-SSSANATVAALDARTADKMTRSLEFLAEQ- 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISS-DGNLLDALGAAIKAALSNTGIP 119
L S A +DL L ++ GK W + +D LV+ S GN+++ + AIKAAL +T IP
Sbjct: 129 -LQKTSHA---LDLKKLCILPGKAVWCVRVDVLVLQSLGGNVVECVFLAIKAALHDTTIP 184
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGV---PVITTLTKVGKHYIVDATLEEESQMS 176
+ + + ++ E + DIS + GV PVI +G D EEE
Sbjct: 185 NCTLIKD-SNGEAVDFDISSNAYDVSPIEGVAEFPVILCFGIIGARVFADPLFEEEECAD 243
Query: 177 SAVSISINRQGHICGMIKR-GGVGLDPSVILDMISVAN 213
+ V + ++ G +C + G G+DP+ I++ + A
Sbjct: 244 AFVLVGVSASGAVCLTQQVCAGRGVDPTTIIEAVDTAR 281
>gi|59006476|emb|CAI46226.1| hypothetical protein [Homo sapiens]
Length = 248
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
I L + GK+ W LY D + + DGN+LDA A+ AAL N +P V + E A
Sbjct: 91 IQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA--- 147
Query: 132 QPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAVSISINRQGHIC 190
EV++ + +L T PV T+ IVD T EEE + ++I ++ +G +C
Sbjct: 148 LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLC 205
Query: 191 GMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+ K GG GL + + D +S A V+R +LMD++
Sbjct: 206 CLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 241
>gi|363729290|ref|XP_003640625.1| PREDICTED: exosome complex component RRP43-like [Gallus gallus]
Length = 276
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 107/233 (45%), Gaps = 26/233 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAE---LSSA 56
+G+T VI VKAEL P+ +KG + V+ F G GEE A ++
Sbjct: 53 LGNTTVICGVKAELAAPALDSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADV 112
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++ + K L + +GK+ W LY D + + DGN+LDA A+ AAL N
Sbjct: 113 IENSQVIAKE---------DLCIADGKLAWVLYCDIICLDYDGNILDASTFALLAALKNV 163
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQM 175
+PSV + E EV++ + L PV T+ IVD T EEE
Sbjct: 164 QLPSVTINEETGLS---EVNLKQKNPLVIRKH--PVATSFAIFDDTLLIVDPTAEEEDLA 218
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+ V++ + +C + K GG L + + D IS A ++R +L+DK+
Sbjct: 219 TGTVTVVTDEDDRLCSVHKPGGSPLTGAKLQDCISRA--ITRHKEVKKLIDKV 269
>gi|320582164|gb|EFW96382.1| Exosome non-catalytic core component [Ogataea parapolymorpha DL-1]
Length = 311
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 32/228 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG---RGGEELSAELSSAL 57
+G T V V AE+ +P +P G I D SP P FE G ++ + E+ L
Sbjct: 52 LGKTKVACRVTAEITKPYEDRPFDGIFQISTDISPICSPFFESGLTTGSKQSNDEI---L 108
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
L+ +DL SL ++ G CW + D ++ DGN +D A+ AL +
Sbjct: 109 ISRLIEKAVRRSGALDLESLCIIAGSKCWAVRADLQFLNYDGNFIDISSIAVMVALLHFR 168
Query: 118 IPSVHVAAEAA----SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH----------- 162
P + + D++ V +S +P+ T +
Sbjct: 169 KPDMEIDGNNVILFDEDQRNPVPLS--------ILHIPLCFTFQFYNPNDDEENIKGNLN 220
Query: 163 ---YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILD 207
++DA L EE +++++IN+ +C M+K GG+ +D S+I++
Sbjct: 221 NELILLDANLIEERLSLGSMTLTINKNKELCQMVKCGGLNIDASMIMN 268
>gi|12847890|dbj|BAB27749.1| unnamed protein product [Mus musculus]
Length = 395
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTIQSSGGIML 242
>gi|344245223|gb|EGW01327.1| Exosome complex exonuclease RRP45 [Cricetulus griseus]
Length = 386
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVPLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|409050427|gb|EKM59904.1| hypothetical protein PHACADRAFT_181840 [Phanerochaete carnosa
HHB-10118-sp]
Length = 287
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 15/225 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VKAE+ P P+ G + +D P F + + LS L
Sbjct: 72 LGDTTVVCGVKAEIAEPELDSPEDGFLVPNLDLPAICSPKFRPGPPSDEAQVLSDRLNET 131
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ + I SL + K W LY+D I+ DGN LDA A+ AAL NT +P
Sbjct: 132 LV-----STGVISTRSLCIESRKAVWVLYVDATCINYDGNALDATLVAMIAALQNTRLP- 185
Query: 121 VHVAAEAASDEQP-EVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSA 178
+A DE V + +E + S P+ + G H + D T EE + +
Sbjct: 186 -----KATFDEDTGRVLCTRKEMIPLQISRFPLSMSFGVFDGTHILTDPTSFEEPLLDTT 240
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+++++ G + +++ G D V+ I+ RQL ++
Sbjct: 241 FTVTVDENGGVISVVQLGLASQD--VLRKCIATTKSRYRQLAKQV 283
>gi|340505571|gb|EGR31888.1| hypothetical protein IMG5_100370 [Ichthyophthirius multifiliis]
Length = 355
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 13/214 (6%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG-RGGEELSAELSSALQHC 60
G T + + + P +P++G + VD S T + + + +E S E+ L+
Sbjct: 49 GDTHIATKTHSSITDPKKEKPNEGFLFFKVDLSSTQDEQQQNLQNFKEYSNEIQKLLEKI 108
Query: 61 LLGGKSG---------AGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKA 111
+ G K ID++SL ++ GK W++ ++ VIS+ GNL+D + +
Sbjct: 109 IKGSKQFFQFKTKQKIYKRAIDVASLCIITGKKVWNITVETSVISNGGNLIDNIYLCVMI 168
Query: 112 ALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEE 171
+L + P + + ++ P+ + + L +P L K + D +E
Sbjct: 169 SLLHFRKPYISIEQQSKIKIHPD---KNPQPLSIHHMPIPFTFALFKNATLLVADPLAQE 225
Query: 172 ESQMSSAVSISINRQGHICGMIKRGGVGLDPSVI 205
E M ++IS+N IC + K GG L VI
Sbjct: 226 EQLMEGRITISVNIYNDICNIHKPGGAPLKLDVI 259
>gi|9506981|ref|NP_062266.1| exosome complex component RRP45 [Mus musculus]
gi|14285679|sp|Q9JHI7.1|EXOS9_MOUSE RecName: Full=Exosome complex component RRP45; AltName:
Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
component 9; AltName: Full=P75 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 1; AltName:
Full=Polymyositis/scleroderma autoantigen 75 kDa;
Short=PM/Scl-75
gi|8132103|gb|AAF73218.1|AF152841_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 a [Mus
musculus]
gi|8132105|gb|AAF73219.1|AF152842_1 polymyositis scleroderma overlap syndrome (PM-SCL) antigen 1 b [Mus
musculus]
gi|13542847|gb|AAH05622.1| Exosome component 9 [Mus musculus]
gi|30354433|gb|AAH52156.1| Exosome component 9 [Mus musculus]
Length = 438
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTIQSSGGIML 242
>gi|187957240|gb|AAI58076.1| Exosc9 protein [Mus musculus]
Length = 438
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTIQSSGGIML 242
>gi|397565050|gb|EJK44452.1| hypothetical protein THAOC_37004 [Thalassiosira oceanica]
Length = 344
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 41/234 (17%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCS--------------PTAEPTFEGRGGEE 48
+T+V+ SVKA+L PS +P +G + + VD S A + R E
Sbjct: 63 TTEVVCSVKADLVHPSPSKPSEGMIGLNVDLSLCGGGGSVIGVSSSVGAAGQSQRRQQRE 122
Query: 49 LSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAA 108
++++S LQ +L ++ L V GK W L +D +++ DG +LD A
Sbjct: 123 EESQIASLLQRLVLP------HALNYEQLAVWPGKYVWRLAVDLVILRCDGCVLDTSSIA 176
Query: 109 IKAALSNTGIPSVHVAAEAA-SDEQPEVD--ISDEEFLQFDTSG----VPVITTLTKVGK 161
++ AL NT +P V E S+E + + D +F + + P++ T++ + +
Sbjct: 177 LREALRNTKLPKVQAVMEGKESNEGSSKNDLVVDGDFSKARSPAGADECPLVVTVSVLSE 236
Query: 162 HY--------------IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLD 201
I+DA EEE+ SS + +S + G ICG+ GG G D
Sbjct: 237 PLSTTEGEPKRRRSVTIIDARTEEEACASSRICVSADPTGMICGVHTVGGSGTD 290
>gi|225441838|ref|XP_002284088.1| PREDICTED: exosome complex component RRP43-like [Vitis vinifera]
Length = 303
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 22/246 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G T ++A+VK E+ P PD+G +AI CSP P GR EE + +S
Sbjct: 67 IGCTTMLAAVKMEVMTPPKESPDEGSIAIEFYMPPICSPLVRP---GRPAEE-APVVSKQ 122
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L +L + I+L L +V GK W Y+D + +DG+L DA A AA S+
Sbjct: 123 LSDTIL-----SSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHL 177
Query: 117 GIPSVHVAAEAASDE--------QPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDAT 168
IP V + E + E + ++ + S +P T + + D T
Sbjct: 178 RIPVVSLNEEGRVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPT 237
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGL-DPSVILDMISVANFVSRQLMDKLDSEI 227
EEES M + V++ ++ G + + K GG L S + D I++ ++L L+ I
Sbjct: 238 AEEESIMETLVTVVLDSSGQLVSLYKPGGPVLAYASAVQDCIALTRQRVKELKSILNEAI 297
Query: 228 AAADAD 233
+ + D
Sbjct: 298 SDMEVD 303
>gi|196007548|ref|XP_002113640.1| hypothetical protein TRIADDRAFT_14906 [Trichoplax adhaerens]
gi|190584044|gb|EDV24114.1| hypothetical protein TRIADDRAFT_14906, partial [Trichoplax
adhaerens]
Length = 267
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 12/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G++ V+A EL RP +P++G++ V+ SP A P + L L+ C
Sbjct: 47 LGASRVLAVTTCELIRPIT-RPEEGRLLFNVELSPMASPLNHSNDVIDRRIALERRLEQC 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ A IDL SL V+ G+ W + + V+ GN+LD A A+L++ P
Sbjct: 106 FV-----ESAAIDLESLCVIAGEKVWFIRVAIHVLDDVGNILDCASIAAIASLAHFRRPQ 160
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--YIVDATLEEESQMSSA 178
V V E + + ++++++ + +P+ T + +D T +EE+ M S
Sbjct: 161 VTVVGEDVTIH----NRNEKDYIPLNIHHMPLCITFAFFHGNGCMAIDPTDQEEAVMESK 216
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ +++NR IC + GGV L +L ++A
Sbjct: 217 LVMALNRHREICTIQFTGGVTLKVDQVLHCCNIA 250
>gi|239790360|dbj|BAH71746.1| ACYPI003501 [Acyrthosiphon pisum]
Length = 267
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ +KAELG P A PD G + + ++ CS P ++++ L+
Sbjct: 52 IGNTAVVCGIKAELGVPKAEAPDIGYLLVNIELPSLCSKKIRPGIPCDEAMQMTSFLNEV 111
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+C + +DL L + K+ W L D ++ DG++LDA A+ +AL
Sbjct: 112 CNNCKI---------LDLQQLCISVDKLVWVLSCDIYCLNYDGSVLDACLIALLSALQTV 162
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
IP E D++ E E ++ + +PV +T + YI+ EEE Q+
Sbjct: 163 KIP------EVKYDKETEETTVIENYIPLKVNSLPVSSTFGVFNEKYILADPTEEEEQLC 216
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
+ + I + K GG + S I + I N
Sbjct: 217 VSKLTVVTNGSLIFSLHKPGGEFIKDSQIQNCIKHVN 253
>gi|148703131|gb|EDL35078.1| exosome component 9, isoform CRA_a [Mus musculus]
gi|148703133|gb|EDL35080.1| exosome component 9, isoform CRA_a [Mus musculus]
Length = 437
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTIQSSGGIML 242
>gi|406604497|emb|CCH44059.1| hypothetical protein BN7_3618 [Wickerhamomyces ciferrii]
Length = 304
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 117/257 (45%), Gaps = 43/257 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T V+A + AE+ P + +G + + SP A FE GR ++ ++ + A
Sbjct: 51 LGKTRVVARISAEIVTPYEDRAFEGLFQVSTEISPMASAMFENGRQSDDELLITRTVEKA 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +SGA +DL SL ++ G CW + D + DG +DA A+ A L +
Sbjct: 111 VR------RSGA---LDLESLCIIAGSKCWSIRADVHFLDCDGGFIDASCIAVMAGLQHF 161
Query: 117 GIPSVHVAAEA----ASDEQPEVDISDEEFLQFDTSGVPVITTL-----TKVGKHY---- 163
+ V+ E +E+ V++S VP+ T T V ++
Sbjct: 162 RKNDITVSGEQIIVHPVEERAPVELS--------ILHVPICVTFAFYNPTNVEENIKGDS 213
Query: 164 -----IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDM----ISVANF 214
+VDATL+EE ++++IN+ IC + K GG+ +D ++D ++A
Sbjct: 214 NNEISVVDATLQEELSQDGTLTVTINKNREICQITKAGGLPMDALTLMDCSRKAYTIAEK 273
Query: 215 VSRQLMDKLDSEIAAAD 231
++ Q+ + L+ + +
Sbjct: 274 ITNQIKNLLEKDFKKRN 290
>gi|380479303|emb|CCF43100.1| 3' exoribonuclease [Colletotrichum higginsianum]
Length = 298
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 12/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ V AE+ P A +P +G I + SP A P FE E LS L+
Sbjct: 51 LGKTRILVKVSAEVTVPYADRPFEGIFQITSELSPMASPAFEINRPTEAEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ W + D V+S DGNL DA A+ AAL + P
Sbjct: 111 I--RRSGA---LDTESLCLVAGQKVWSVRADVHVLSHDGNLTDAACLAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQMSS 177
E+ + P ++ E + P T + G +VDA EE +S
Sbjct: 166 TSNEGESLTIFTP----AEREPVPLSWLHSPFCVTFSFFGDEGEITLVDANWIEEQLRTS 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ ++S+N+ G I + K GG ++ +L +VA ++ +D ++A
Sbjct: 222 SATVSLNKHGEISQISKLGGTPVEAVTLLHCGNVALQKAKDFSTLVDEKLA 272
>gi|116207378|ref|XP_001229498.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
gi|88183579|gb|EAQ91047.1| hypothetical protein CHGG_02982 [Chaetomium globosum CBS 148.51]
Length = 268
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A AE+ P +P G I + SP P FE E LS L+
Sbjct: 51 LGKTRVLAKATAEVTVPYVDRPLDGIFTIATELSPMTSPAFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D SL +V G+ CW + +D V+S DG L DA A+ AAL + P
Sbjct: 111 V--RRSGA---LDTESLCLVAGQKCWSVRVDVHVVSHDGGLTDAACVAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV---GKHYIVDATLEEESQMSS 177
+ A + P ++ E + P+ T + G+ ++DAT EE +
Sbjct: 166 TSMEAGRLTVYTP----AEREPVPLSWLHSPLCVTWSFFGDDGETAVLDATWLEEQVRVA 221
Query: 178 AVSISINRQGHICGMIK 194
+ ++S+N+ G IC + K
Sbjct: 222 SCTVSLNKHGEICQIAK 238
>gi|354496605|ref|XP_003510416.1| PREDICTED: exosome complex component RRP45-like [Cricetulus
griseus]
Length = 437
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVPLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|91081401|ref|XP_972667.1| PREDICTED: similar to exosome component 8 [Tribolium castaneum]
gi|270006123|gb|EFA02571.1| hypothetical protein TcasGA2_TC008282 [Tribolium castaneum]
Length = 271
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +KAEL +P A ++G + V+ P F G A++++ L
Sbjct: 53 VGRTTVVCGIKAELCQPKAEAANEGFLIPNVELPPLCSSKFRP-GPPTEQAQVATQLVAD 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L +DL +L + K+ W LY D + + DG L+DA A+ AAL + +P+
Sbjct: 112 ILKNSDC----LDLKTLCIFPDKLAWCLYADLICLDLDGALIDACVVALMAALKSVTLPA 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V + A D + +V++ + + L + P+ TT ++D T++EE +S V+
Sbjct: 168 VQY--DPALDNK-QVNVQERKALS--VTNTPIATTFAMFDDKILIDPTVDEEDLSTSLVT 222
Query: 181 ISINRQGHICGMIKRGG 197
I + ++ +C + K GG
Sbjct: 223 IVV-KEEELCFVHKPGG 238
>gi|70794772|ref|NP_001020577.1| exosome complex component RRP45 [Rattus norvegicus]
gi|81918190|sp|Q4QR75.1|EXOS9_RAT RecName: Full=Exosome complex component RRP45; AltName:
Full=Exosome component 9
gi|67678411|gb|AAH97413.1| Exosome component 9 [Rattus norvegicus]
gi|149048739|gb|EDM01280.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
gi|149048740|gb|EDM01281.1| exosome component 9, isoform CRA_b [Rattus norvegicus]
Length = 437
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTIQSSGGIML 242
>gi|327303316|ref|XP_003236350.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326461692|gb|EGD87145.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 292
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 13/222 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AEL P + G + V+ + A P +E EL LS L
Sbjct: 51 LGKTAVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G++CW++ D ++ DG L+DA AI A L + +P
Sbjct: 111 V--RRSNA---LDTESLCIAKGRICWNIRADIHILDCDGGLIDASCLAIMAGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSS 177
V D + V ++E+ +Q + + +P+ T L GK ++DAT EE+
Sbjct: 166 STV-----RDGEVTVFTTEEKVPVQLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEG 220
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
++ +++++ G I K G DP +++ ++A R+L
Sbjct: 221 SLVVALDKTGEIALYSKPDGAPADPVNMVNCSTLALEKVREL 262
>gi|269115421|gb|ACZ26287.1| putative exosome complex exonuclease [Mayetiola destructor]
Length = 273
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 11/198 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VI +KAEL P+ +P G + +D +P P + + + L+ L
Sbjct: 53 LGNTTVICGIKAELTAPNVEEPQNGYLIPNIDLTPLCSPKYRSAASTDDAQVLTCHLNDI 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K IDL L + + K+ W LY D I DG++LDA A+ AAL + +P
Sbjct: 113 IRDSK-----WIDLKQLCIAKEKLVWILYCDITCIDYDGSILDASVVALCAALRSLMLPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG-KHYIVDATLEEESQMSSAV 179
V E + + + S E + PV TT K D EEE ++ +
Sbjct: 168 VQYDIETNNYTVHQTERSPLEL----SENCPVSTTCMVFDEKSIFADPDAEEEELANTLI 223
Query: 180 SISINRQGHICGMIKRGG 197
+I+ + G +C + K GG
Sbjct: 224 TIA-SCDGELCLVNKAGG 240
>gi|83314648|ref|XP_730452.1| 3' exoribonuclease domain 1 [Plasmodium yoelii yoelii 17XNL]
gi|23490177|gb|EAA22017.1| 3' exoribonuclease family, domain 1, putative [Plasmodium yoelii
yoelii]
Length = 281
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 17/238 (7%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L P D+G V + +DC + + E L S C+
Sbjct: 49 NNVICGIKLSLLPPEPHSIDEGFVNLQIDCPASVASNRIKK--EHLQIMTSIIYDLCI-- 104
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
ID L V+ K W + I+ +V++ G LLD + AI AL++ IP V
Sbjct: 105 -----KNNIDKKKLCVLPSKFVWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKA 159
Query: 124 AAEA--------ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
+ ++ E++I + E L F +P+ ++ ++ YI D + EE +
Sbjct: 160 PKKIDELNMFHNTKSKEYELEIVENEKLPFPCENIPICISIGEINNKYIYDMSKIEEELV 219
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
+ +++ G K G+ ++ S IL+M + +S+ L K++ I A+
Sbjct: 220 ENVFVVAVTSSGKCVAFHKLYGISMEVSSILNMSENSVKISQNLFKKINEAIDKIQAN 277
>gi|402592869|gb|EJW86796.1| hypothetical protein WUBG_02293 [Wuchereria bancrofti]
Length = 393
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 14/215 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V L PS + + G + + VD SP A P +E EL L+
Sbjct: 50 LGETKVLAQVSCSLVEPSTTRGNMGTIEVQVDMSPMASPDYEDGRLNSKGLELMRILE-- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL G +DL SL + K W + ID V++SDG+L+D A AL++ P
Sbjct: 108 LLYRDCGV---VDLESLCLRTFKQVWQIRIDVHVLASDGSLVDCACIASSTALAHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSS 177
V V ++ + +DE+ + + +P+ T +T G++ I+D T +EE +
Sbjct: 165 VSVLPDSII-----IHSNDEKIPISLNIYHMPICVTFGITSDGQN-IIDPTDKEEQCLGG 218
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
++ ++ N++ IC + + G L +I+ + A
Sbjct: 219 SLIVATNKRHEICALHQSGKFLLSEQLIVQCVDRA 253
>gi|332244454|ref|XP_003271389.1| PREDICTED: exosome complex component RRP45 isoform 3 [Nomascus
leucogenys]
Length = 392
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A +L + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|126654493|ref|XP_001388417.1| exoribonuclease PH [Cryptosporidium parvum Iowa II]
gi|126117122|gb|EAZ51222.1| exoribonuclease PH, putative [Cryptosporidium parvum Iowa II]
Length = 295
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
Query: 65 KSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVA 124
K DLS L ++E K+ W++YID ++S GN++D + AI AL T IP +HV+
Sbjct: 123 KDMCFKNFDLSKLTILENKLYWNIYIDATILSFGGNMVDWVTIAIHTALRTTRIPKIHVS 182
Query: 125 AEAASDEQPEVDISDE------EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
++ E + D+S F +P I + + I D ++E+ +
Sbjct: 183 PSISTKENNK-DVSYTVSPSVCSGTPFPFQDIPFIISAGCIRGKVIWDMNMQEQICSKTI 241
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
+++SIN +G M K LD ++I +I+ A +S ++ LD
Sbjct: 242 IALSINSKGECVAMNKVYSNTLDLNLIPTIINKAAEISSEISKSLD 287
>gi|145246552|ref|XP_001395525.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus niger CBS 513.88]
gi|134080243|emb|CAK97146.1| unnamed protein product [Aspergillus niger]
Length = 292
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 19/218 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + AE+ +P +P G I ++ + P ++ GR G+ +++ L
Sbjct: 51 LGKTSLIVRISAEVTKPHDDRPFDGLFTIAMELTAMGSPAWDNGRQGD-FETYVTNVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D V DGNL+DA I A L
Sbjct: 110 VVRHSNA-----LDTESLCILKGVSCWSIRADVHVTDYDGNLIDAACIGIMAGLQ----- 159
Query: 120 SVHVAAEAA--SDEQPEVDISDEEF-LQFDTSGVPVITTLTKV--GKHYIVDATLEEESQ 174
H + A D Q V DE + + + P+ T GK I+DAT +EE
Sbjct: 160 --HFRRQDAVVKDGQVIVYRLDERVPVALNITHKPLSVTFHTFDEGKRVIIDATRKEEQA 217
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ V I IN G +C + K G +D V +D SVA
Sbjct: 218 AEADVVIGINNAGDVCFVSKFSGSPVDAMVFVDKTSVA 255
>gi|353236941|emb|CCA68925.1| hypothetical protein PIIN_02785 [Piriformospora indica DSM 11827]
Length = 333
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 52/277 (18%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+A+V+ E+ ++ D+G++ V CSP A P +++ +L+S LQ
Sbjct: 56 VGGTEVVAAVRLEV-EDIDLELDEGRMRCNVTCSPAAYPHLSANQQDDIQKDLTSLLQST 114
Query: 61 LLGGKSGAGAGIDLSS-----LVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
KS G +S L ++ G+ W +Y+D +V+S GN+ D L A +AA+ +
Sbjct: 115 FSPTKSHDSNGDSFTSVMSKSLTILPGRKAWTMYLDAVVLSDAGNVHDVLFLACRAAICD 174
Query: 116 TGIPSVHVAAEA----------ASDEQPEVDISDE-----------------EFLQFDTS 148
T +P A A + E+D+ +E +F DT+
Sbjct: 175 TRVPRTRAVEYAQPSKGSSTRRAGETGGEMDVEEEADIWKTAVQSKRAARAADFELEDTA 234
Query: 149 ----------GVPVITTLTKVGKHYIVDATLEEESQ-------MSSAVSISINRQGHICG 191
PV TL + +I+DAT EE + S +IS ++G G
Sbjct: 235 DEGGWLEGRERCPVAVTLNVLPTMHILDATHAEEQAVPLKLVLIYSFATISTQKEGEFMG 294
Query: 192 MIKRGGVGLDPSVILD-MISVANFVSRQLMDKLDSEI 227
M + G G P L +I ++QL+ L+ ++
Sbjct: 295 M-RLLGPGQVPMAYLSGLIQEGETYAKQLVSALNVQM 330
>gi|402217991|gb|EJT98069.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 299
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 20/242 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---------LS 50
+G T V+A + A + RP +P +G + I + SP A +E GR EE +
Sbjct: 51 IGETRVVAQISATVTRPYFDRPFEGIIVIHTEFSPMASSAYETGRPSEEEITMARILEKT 110
Query: 51 AELSSALQH---CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGA 107
S AL C+L G+ + + ++ +V G+ W L + ++ +GNLLD
Sbjct: 111 IRRSEALDREALCILAGQKVSVPHRETNT-KIVRGQQVWTLRLTIQFLADEGNLLDCACM 169
Query: 108 AIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY--IV 165
A AAL + P V V + A+ PE + + P+ + +G ++
Sbjct: 170 AAMAALRHFRKPEVEVVGDEATMFSPE----ERAPVPLALHHQPLCVSFVSLGPRNTPVM 225
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
D + EE ++IS+N Q IC + K GGV L +L ++VA R + D L+
Sbjct: 226 DPSRLEEQLAHGKMTISLNAQKEICVLQKAGGVALPADEVLHAVNVAVSRVRDMSDLLNR 285
Query: 226 EI 227
+
Sbjct: 286 SL 287
>gi|348582824|ref|XP_003477176.1| PREDICTED: exosome complex component RRP45-like [Cavia porcellus]
Length = 439
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VCVQGEEVTLYTPE----ERDPVALSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|405968426|gb|EKC33499.1| Exosome complex exonuclease RRP43 [Crassostrea gigas]
Length = 300
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 12/232 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAE +P +P G + V+ SP P F R G + E + L
Sbjct: 79 IGNTTVMCGIKAECAKPKTEEPAHGFIVPNVELSPMCSPQF--RPG--MPGEQARVLSQF 134
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + ID+ L + G++ W LY D + + GN+ DA ++ AAL+NT +P+
Sbjct: 135 MLEVMKNSNC-IDVKKLCIEPGRLVWTLYCDIVCLDYGGNVTDACVLSLLAALNNTVLPN 193
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI-VDATLEEESQMSSAV 179
V + + ++ E LQ +S PV +T + VD T EEE+ + +
Sbjct: 194 VVLNKDT---DKFEAFPDQSTTLQLQSS--PVSSTFAIFDDEILFVDPTAEEENLATGQL 248
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
+I + +C + K GG L + I A +++++ +D I++ +
Sbjct: 249 TI-VTTDDKLCMVHKPGGTPLTDQQLCLCIKQAFERTKEVLRLIDDTISSVE 299
>gi|390366534|ref|XP_783510.2| PREDICTED: exosome complex component RRP43-like [Strongylocentrotus
purpuratus]
Length = 279
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 31/237 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIF----VDCSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ +K E P+ +P KG + VD P F+ G + A+++S
Sbjct: 53 LGNTTVVCGIKGEFASPTVEEPKKGYLVYLTFPNVDLPPLCSAQFKP-GPPSIQAQVTSQ 111
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L + + ++ L + EG + W LY D + + DGN++DA A+ AAL N
Sbjct: 112 L----VADTLLSSNLLNYEDLCIKEGNMVWVLYCDMMCLDYDGNIIDACLIALLAALRNV 167
Query: 117 GIPSVHV-----AAEAASDEQPEVDISDE----EFLQFDTSGVPVITTLTKVGKHYIVDA 167
+P V + AE +S E ++I ++ F FD S + +VD
Sbjct: 168 RLPVVTIDEDTGLAELSSTEDRSLNIVNQFAATTFSVFDDSIL-------------LVDP 214
Query: 168 TLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
T+EEE + +++ + + G +C + K GG L I D I A ++++ +D
Sbjct: 215 TVEEEDLATGLMTVIVTQDGRLCNIHKPGGTPLSTDQIQDCIGRAQTRAKEICSLID 271
>gi|440790324|gb|ELR11607.1| exosc8 protein [Acanthamoeba castellanii str. Neff]
Length = 278
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 27/240 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V A VKAE G + P + V+ +P P F+ ELS +++ L
Sbjct: 54 IGNTSVSAGVKAECG----LAPPTTPGNVNVELTPLCSPNFKPGKPSELSQYIATILNRL 109
Query: 61 LLGGKSGAGAGIDL--SSLVVVEGK---------VCWDLYIDGLVISSDGNLLDALGAAI 109
+ DL S++ +E K + W LY+D + DGN+ DA A+
Sbjct: 110 V--------RTTDLVDESVLRIEDKEEQSKERKAMVWYLYVDMYCLDYDGNVFDACLIAL 161
Query: 110 KAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DAT 168
+AL+N +P+ V ++ D+ V + E + P+ T + Y++ D T
Sbjct: 162 LSALANVRLPAARVVSK---DDNFTVVTTGEANIGLRLRHFPIPLTFAIFDEIYVLADPT 218
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
EEES S +I N + IC ++K GG L S + + + A ++M L +A
Sbjct: 219 AEEESLAGSTFTIIYNDKKEICSVLKPGGTTLSDSTLKECMERAKVRVDEVMPLLAHTMA 278
>gi|84998310|ref|XP_953876.1| exosome ribonuclease PH (Rrp42 ) [Theileria annulata]
gi|65304873|emb|CAI73198.1| exosome ribonuclease PH (Rrp42 homologue), putative [Theileria
annulata]
Length = 268
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 110/235 (46%), Gaps = 15/235 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G V +V + P PD+G +D + T FE ELS L +
Sbjct: 43 FGDNIVQTTVNFSIVSPEDSTPDEG----IIDLTITGTNIFEN---SELSQRNYEILCN- 94
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L A +DL SL ++ G++CW++ I V+ G ++DAL + ++L + +P
Sbjct: 95 ILYDLEFQHAFLDLKSLCILPGQLCWNIRIHSTVVKRGGCVIDALSIGVLSSLMCSDVPD 154
Query: 121 VHVA------AEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
V V + S+ Q ++ + + + P+IT++ KV K+Y+ T EEE
Sbjct: 155 VEVMFRDELESYQRSNLQLKLSLDKNKIISQLVERFPLITSVGKVSKNYLWGMTREEELC 214
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
+S+++++ G C +K G + + I ++I+ + ++ +KL+ I++
Sbjct: 215 SDGTMSVAVDKTGK-CLSVKANGSCFELNCIQNLINTSTEITLDNFNKLNQFISS 268
>gi|195351560|ref|XP_002042302.1| GM13365 [Drosophila sechellia]
gi|194124145|gb|EDW46188.1| GM13365 [Drosophila sechellia]
Length = 405
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 105/239 (43%), Gaps = 29/239 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAI--------FVDCSPTAEPTFEGRGGEELSAE 52
MG T V+A V E+G P+ +P++GK+ + F+D A T + R S +
Sbjct: 56 MGDTKVMAQVTCEMGPPALSRPNEGKLHLNVLLGGVAFLD---EAYSTHDQR-----SLK 107
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAA 112
L+S L+ KS IDL SL V K W + ++ VI+ DGNL DA A AA
Sbjct: 108 LNSLLERTFRSSKS-----IDLESLCVAAEKHVWCIRVNVNVINHDGNLYDASSIATLAA 162
Query: 113 LSNTGIPSV-HVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATL 169
L + P V + E +Q ++ EF L F V V + K I+D TL
Sbjct: 163 LMHFRRPDVSYKDGELCIFKQ-----NEREFMPLLFHHYPVSVTYCVYKSSGQPILDPTL 217
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
EE+ S + +S N +C + G + ++ A + L+D + +A
Sbjct: 218 LEENAADSVIVLSFNSYQELCSLTAGGTAPTNAPTVMQCARNAAARCKSLLDFVRKALA 276
>gi|167043480|gb|ABZ08177.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 264
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 18/194 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V A VK ++ P +P++G + + P A P +E S EL +
Sbjct: 53 MGDTIVYAGVKLQIMVPYPDRPNQGGLMCSAEVRPVAGPNWEPGPPSPESIELGRVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SG ID+ L ++ G+ W + +D IS DGNL DA A AA+ IP
Sbjct: 113 IR--ESGC---IDVDGLCLIPGEKAWQVILDLFAISDDGNLFDAFALAGIAAMRTAMIPE 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
E + +++P + S P++ + KVG ++ DA EE +
Sbjct: 168 ERF--EISGEDRP-----------LNISKTPIMCSYHKVGGRFVYDADGREELGGDERIH 214
Query: 181 ISINRQGHICGMIK 194
I++ GH+ + K
Sbjct: 215 ITLGDDGHVHSLQK 228
>gi|332244450|ref|XP_003271387.1| PREDICTED: exosome complex component RRP45 isoform 1 [Nomascus
leucogenys]
Length = 439
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A +L + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|332244452|ref|XP_003271388.1| PREDICTED: exosome complex component RRP45 isoform 2 [Nomascus
leucogenys]
Length = 456
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A +L + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVSLCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|242776727|ref|XP_002478890.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
gi|218722509|gb|EED21927.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
Length = 252
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 16/221 (7%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+ ++ + AE+ RP + G I ++ + P +E EL +S L +
Sbjct: 12 SSLVVRISAEVSRPRDDRQSDGTFLIAMELTAMGSPAWENLRQNELETYVSRVLDRVIRH 71
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
+ +D SL +++GK CW++ D V DGNL+D+ I A L + P + V
Sbjct: 72 SNA-----LDTESLCILKGKSCWNIRADVHVTDYDGNLIDSACIGIMAGLQHFRRPDIEV 126
Query: 124 AAEAASDEQPEV-DISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSAVS 180
D Q V I++ + + + P+ T GK I+DAT +EE +
Sbjct: 127 -----KDGQVRVFGINERVPVPLNITHKPLSITFQSFHEGKVLILDATRKEEQASEGDLI 181
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
I++N G C + K G P L++I+ N +++++
Sbjct: 182 IALNSTGETCAVYKAAG---SPVSALEVINKTNLAQQKVLE 219
>gi|341897277|gb|EGT53212.1| CBN-EXOS-9 protein [Caenorhabditis brenneri]
Length = 432
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 19/198 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A+V A++ PS+M+P KG + I VD SP A E EL L+
Sbjct: 50 IGNTKVLAAVSAQIAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSRGMELIRLLELI 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + ID+ SL + GK W + +D ++ DG+LLD A AL + P+
Sbjct: 110 IRDSRC-----IDVESLCIRAGKEIWKVRVDVRILDDDGSLLDCACLAAITALQHFKRPN 164
Query: 121 VHVAAEAASDEQPEVDISDEEF----LQFDTSGVPVITT--LTKVGKHYIVDATLEEESQ 174
V + +P + E+ + + +P+ TT L G+ ++D T +E +
Sbjct: 165 VTL--------EPHHTLIYSEYEKAPVPLNIYHMPICTTIGLLDKGQMVVIDPTDKEAAC 216
Query: 175 MSSAVSISINRQGHICGM 192
+ ++ ++ N++ +C +
Sbjct: 217 LDGSIVVACNKRREVCAL 234
>gi|356568754|ref|XP_003552575.1| PREDICTED: exosome complex component RRP43-like [Glycine max]
Length = 301
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 30/213 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++ ++K E+ PS PD+G +AI CSP P +S +LS+
Sbjct: 67 IGSTTMLTAIKMEIMTPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEASPMVSKQLSNT 126
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + DL L +V GK W Y+D + +DG L DA + AALS+
Sbjct: 127 I---------SSSRMTDLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAIAALSHL 177
Query: 117 GIPSVHVAAEAASDEQPEVDISDE------------EFLQFDTSGVPVITTLTKVGKHYI 164
IPS+ A +D+ V +SDE E + +P T + +
Sbjct: 178 QIPSI-----AMNDDGKIVLVSDEDGQKRAQEPVNKEKRKLTLRSIPFSLTCILHKNYIL 232
Query: 165 VDATLEEESQMSSAVSISINRQGHICGMIKRGG 197
D T EEES M + V++ ++ G + + K GG
Sbjct: 233 ADPTAEEESIMETHVTVVLDTSGQLISLYKPGG 265
>gi|355686813|gb|AER98195.1| exosome component 9 [Mustela putorius furo]
Length = 394
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|70944649|ref|XP_742234.1| exoribonuclease PH [Plasmodium chabaudi chabaudi]
gi|56521094|emb|CAH75418.1| exoribonuclease PH, putative [Plasmodium chabaudi chabaudi]
Length = 281
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 17/238 (7%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L P D+G V + +DC + + E L S C+
Sbjct: 49 NNVICGIKLSLLPPDQNSIDEGFVNLQIDCPASVASNRIKK--EHLEIMTSIIYDLCI-- 104
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
ID L V+ K W + I+ +V++ G LLD + AI AL++ IP V
Sbjct: 105 -----KNNIDKKKLCVLPSKFVWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKA 159
Query: 124 AAEA--------ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
+ ++ E++I + E L F +P+ ++ ++ YI D + EE +
Sbjct: 160 PKKIDELNMFHNTKSKEYELEIVENEKLPFPCDNIPICISIGEINNKYIYDMSKIEEELV 219
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
+ +++ G K G+ ++ S IL+M + +S+ L K++ I A+
Sbjct: 220 ENVFVVAVTSSGKCVAFHKLYGISMEISSILNMSENSVQISQNLFKKINEAIEKIQAN 277
>gi|195168570|ref|XP_002025104.1| GL26867 [Drosophila persimilis]
gi|194108549|gb|EDW30592.1| GL26867 [Drosophila persimilis]
Length = 398
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 13/209 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++G P+ +P++GK+ ++V + + + ++ S L+S L+
Sbjct: 56 LGDTKVMAQVTCDMGTPTTSRPNEGKLQLYVTLAGVSYLDSVQKTHDKRSLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL V W + +D V++ DGNL DA A+ AAL + P
Sbjct: 116 FRTSRC-----VDLESLCVASELHVWCIRVDVNVLNHDGNLYDASTVAVLAALMHFRRPD 170
Query: 121 VHVA-AEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY--IVDATLEEESQMSS 177
V E + + E D+ FL + PV T ++ VD TL EE+ S
Sbjct: 171 VTFTDGELRTYTEKERDMIPLLFLHY-----PVSVTYCIYTSNFQPFVDPTLLEENTADS 225
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVIL 206
+ +S N +C + G V D I+
Sbjct: 226 TIILSFNSYQELCTLNAGGTVPTDVRTIM 254
>gi|426345383|ref|XP_004040394.1| PREDICTED: exosome complex component RRP45 isoform 3 [Gorilla
gorilla gorilla]
Length = 392
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|320033639|gb|EFW15586.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Coccidioides posadasii str. Silveira]
Length = 265
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 14/212 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + AE+ P + G + ++ + A P FE +L +LS L
Sbjct: 51 LGRTSVIVRISAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G CW++ D ++ +DG L+D AI A L + IP
Sbjct: 111 V--RRSNA---LDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSSA 178
V+ + PE + + + + VP+ T L GK ++DAT EE+ A
Sbjct: 166 STVSDGKVTVYSPEEKVP----VPLNLTKVPLSITFNLYDEGKITLMDATSSEEAVSEGA 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMIS 210
V I++++ G I K G DP L+M++
Sbjct: 222 VIIALDKTGEIALYTKAEGTPADP---LNMVA 250
>gi|321458150|gb|EFX69223.1| hypothetical protein DAPPUDRAFT_301019 [Daphnia pulex]
Length = 276
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 24/225 (10%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKG----KVAIFVDCSPTAEPTFEGRGGEELSAELSSAL 57
G+T VI +KAEL P +P KG V + CS + G + + ++ +
Sbjct: 54 GNTTVICGIKAELAAPEREEPSKGFIIPNVTLPSLCSSQIKSGPPGETAQAATQFIAELV 113
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ ++ +DL +L + K W L+ D L I+ DG+LLDA A+ AAL N
Sbjct: 114 NNNII---------MDLETLCIKVSKWAWVLHCDLLCINLDGSLLDACVMALVAALKNLK 164
Query: 118 IPSVHVAAEAASDEQPEVDISD-EEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQM 175
+P V + DE+ + IS+ +E + FDT PV +T + ++ D T EEE Q+
Sbjct: 165 LPIV------SYDEEMDKLISNPDEKMGFDTIKQPVTSTFSLFDNGILISDPTFEEE-QL 217
Query: 176 SSAVSISINRQG-HICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
++ ++ SI +G + M K GG LD + +I + ++++
Sbjct: 218 AAGLT-SITMEGTSVTHMYKPGGCTLDEKQVKKLIQQSELKTKEV 261
>gi|297674272|ref|XP_002815156.1| PREDICTED: exosome complex component RRP45 isoform 5 [Pongo abelii]
Length = 392
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREECVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|297293310|ref|XP_001101063.2| PREDICTED: exosome complex exonuclease RRP45 [Macaca mulatta]
Length = 432
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|426345379|ref|XP_004040392.1| PREDICTED: exosome complex component RRP45 isoform 1 [Gorilla
gorilla gorilla]
Length = 439
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|402870361|ref|XP_003899195.1| PREDICTED: exosome complex component RRP45 isoform 2 [Papio anubis]
Length = 456
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|332820219|ref|XP_001154217.2| PREDICTED: exosome complex component RRP45 isoform 7 [Pan
troglodytes]
Length = 392
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|389739495|gb|EIM80688.1| ribosomal protein S5 domain 2-like protein [Stereum hirsutum
FP-91666 SS1]
Length = 286
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 24/238 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
G T V+A V A++ RP+ +P +G++ I + SP A +E GR +E A LS L
Sbjct: 50 FGKTRVLAQVDAKMIRPTPERPYEGQILIHSEISPMASSEYEPGRPSDEEVA-LSRMLDK 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D L ++ G+ W L I ++ GNLLD A AAL + P
Sbjct: 109 VL--RRSDA---VDKEGLCILAGQRVWQLRITIHCLADAGNLLDCACLAGIAALKHFRRP 163
Query: 120 SVHVAAEAASDEQP----EVDISDEE------FLQFDTSGVPVITTLTKVGKHYIVDATL 169
V V + + P V +S F F + P T ++D +
Sbjct: 164 EVEVVGDEVTVHPPSSRAPVPLSLHHTPFCITFAYFPSPSHPHTPTC-------LLDPSH 216
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
E+ + +S+++N Q +C + K GG+ L P +L + VA +R+L L+ +
Sbjct: 217 LEQRLSTGTLSLALNAQRELCVVHKAGGLPLAPEEVLRAVEVAVGKARELEKFLEGRL 274
>gi|410956922|ref|XP_003985085.1| PREDICTED: exosome complex component RRP45 [Felis catus]
Length = 445
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|402870363|ref|XP_003899196.1| PREDICTED: exosome complex component RRP45 isoform 3 [Papio anubis]
Length = 392
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|344277527|ref|XP_003410552.1| PREDICTED: exosome complex component RRP45 [Loxodonta africana]
Length = 439
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|198471344|ref|XP_001355587.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
gi|198145876|gb|EAL32646.2| GA21908 [Drosophila pseudoobscura pseudoobscura]
Length = 398
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 9/207 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++G P+ +P++GK+ ++V + + + ++ S L+S L+
Sbjct: 56 LGDTKVMAQVTCDMGTPTTSRPNEGKLQLYVTLAGVSYLDSVQKTHDKRSLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL V W + +D V++ DGNL DA A+ AAL + P
Sbjct: 116 FRTSRC-----VDLESLCVASELHVWCIRVDVNVLNHDGNLYDASTVAVLAALMHFRRPD 170
Query: 121 VHVA-AEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V E + + E D+ FL + S I T VD TL EE+ S +
Sbjct: 171 VTFTDGELRTYTEKERDMIPLLFLHYPVSVTYCIYT---SNFQPFVDPTLLEENTADSTI 227
Query: 180 SISINRQGHICGMIKRGGVGLDPSVIL 206
+S N +C + G V D I+
Sbjct: 228 ILSFNSYQELCTLNAGGTVPTDVRTIM 254
>gi|402870359|ref|XP_003899194.1| PREDICTED: exosome complex component RRP45 isoform 1 [Papio anubis]
gi|380813850|gb|AFE78799.1| exosome complex component RRP45 isoform 2 [Macaca mulatta]
Length = 439
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|114595908|ref|XP_001154164.1| PREDICTED: exosome complex component RRP45 isoform 6 [Pan
troglodytes]
gi|410265114|gb|JAA20523.1| exosome component 9 [Pan troglodytes]
gi|410292732|gb|JAA24966.1| exosome component 9 [Pan troglodytes]
Length = 439
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|355687576|gb|EHH26160.1| hypothetical protein EGK_16059 [Macaca mulatta]
gi|355749543|gb|EHH53942.1| hypothetical protein EGM_14660 [Macaca fascicularis]
Length = 456
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|301776905|ref|XP_002923870.1| PREDICTED: exosome complex exonuclease RRP45-like [Ailuropoda
melanoleuca]
Length = 440
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|303312521|ref|XP_003066272.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240105934|gb|EER24127.1| 3' exoribonuclease family, domain 1 containing protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 292
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 14/212 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + AE+ P + G + ++ + A P FE +L +LS L
Sbjct: 51 LGRTSVIVRISAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G CW++ D ++ +DG L+D AI A L + IP
Sbjct: 111 V--RRSNA---LDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSSA 178
V+ + PE + + + + VP+ T L GK ++DAT EE+ A
Sbjct: 166 STVSDGKVTVYSPEEKVP----VPLNLTKVPLSITFNLYDEGKITLMDATSSEEAVSEGA 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMIS 210
V I++++ G I K G DP L+M++
Sbjct: 222 VIIALDKTGEIALYTKAEGTPADP---LNMVA 250
>gi|170084377|ref|XP_001873412.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650964|gb|EDR15204.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 284
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 24/237 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGG---EELSAELSSA 56
+G T V+A V+A++ +P+ +P +G + I + SP A +E GRG EE++ ++
Sbjct: 50 LGKTRVLAQVEAKMVKPAPERPFEGTITIHSEISPMASSEYEPGRGRPSDEEVA--ITRM 107
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L L +S A +D SL ++ G+ W + + ++ GN+LD A AL +
Sbjct: 108 LDKVL--KRSDA---VDKESLCILAGQRVWHIRLTLHFLADAGNMLDCACLAGITALRHF 162
Query: 117 GIPSVHVAAEAASDEQP------EVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLE 170
P V V + P + I F F + P ITT ++D
Sbjct: 163 RRPDVEVVGDEVIVHSPLDRAPVPLAIHHTPFC-FTFAFFPDITTPP------VLDPNQL 215
Query: 171 EESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
E+ + VSI++N Q IC + K GGV L+ +L +++VA +++L LD+++
Sbjct: 216 EQRLSAGLVSIALNAQKEICVLQKLGGVPLETEEVLSLVNVAVGKAKELHGFLDTQL 272
>gi|297674264|ref|XP_002815152.1| PREDICTED: exosome complex component RRP45 isoform 1 [Pongo abelii]
gi|297674266|ref|XP_002815153.1| PREDICTED: exosome complex component RRP45 isoform 2 [Pongo abelii]
Length = 439
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREECVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|426345381|ref|XP_004040393.1| PREDICTED: exosome complex component RRP45 isoform 2 [Gorilla
gorilla gorilla]
Length = 456
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRHSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|281343292|gb|EFB18876.1| hypothetical protein PANDA_013099 [Ailuropoda melanoleuca]
Length = 456
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|73983962|ref|XP_533302.2| PREDICTED: exosome complex component RRP45 isoform 1 [Canis lupus
familiaris]
Length = 440
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|378733642|gb|EHY60101.1| exoribonuclease like to ribonuclease PH [Exophiala dermatitidis
NIH/UT8656]
Length = 291
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 28/235 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T V + AE+ +P + +G I + SP A P +E GR E+ LS L A
Sbjct: 51 LGKTRVHVQISAEVTKPLEERKFEGIFTIVTELSPIASPAYEVGRQTEQEVILSRILEKA 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +S A +D SL ++ G CW + D V+ SDG L+DA AI AAL +
Sbjct: 111 IR------RSNA---LDTESLCIIAGAKCWSVRADVHVLDSDGGLIDASCIAIVAALRHF 161
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQ 174
P V V E + +++ + PV T + G+ ++DAT EE
Sbjct: 162 RRPDVSVDGENVTI----YTMAERVPVPLSLMHNPVCITFSFYHGGETVLLDATRSEEQV 217
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA--------NFVSRQLMD 221
+ V +++N +C + K GG +D V+L + A FV+++L +
Sbjct: 218 REAEVILTVN-DFELCQIAKLGGSPIDALVLLKCTNTALAKGKEINGFVAKKLAE 271
>gi|25144570|ref|NP_741217.1| Protein EXOS-9, isoform a [Caenorhabditis elegans]
gi|351062706|emb|CCD70741.1| Protein EXOS-9, isoform a [Caenorhabditis elegans]
Length = 434
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 27/202 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE----GRGGEELSAELSSA 56
+G+T V+A+V AE+ PS+M+P KG + I VD SP A E G G EL L
Sbjct: 50 IGNTKVMAAVSAEIAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSKGMELIRLLELI 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ ID+ +L + GK W + +D ++ DG+LLD A AL +
Sbjct: 110 IRD---------SRCIDVEALCIRAGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHF 160
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEF----LQFDTSGVPVITT--LTKVGKHYIVDATLE 170
P+V + +P + E+ + + +P+ TT L G+ ++D T +
Sbjct: 161 RRPNVTL--------EPHHTLIYSEYEKAPVPLNIYHMPICTTIGLLDKGQIVVIDPTDK 212
Query: 171 EESQMSSAVSISINRQGHICGM 192
E + + ++ ++ N++ +C +
Sbjct: 213 ETACLDGSIVVACNKRREVCAL 234
>gi|358369855|dbj|GAA86468.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus kawachii IFO 4308]
Length = 292
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 19/218 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + AE+ +P +P G I ++ + P ++ GR G+ +++ L
Sbjct: 51 LGKTSLIVRISAEVTKPHDDRPFDGLFTIAMELTAMGSPAWDNGRQGD-FETYVTNVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D V DGNL+DA I A L
Sbjct: 110 VVRHSNA-----LDTESLCILKGVSCWSIRADVHVTDYDGNLIDAACIGIMAGLQ----- 159
Query: 120 SVHVAAEAA--SDEQPEVDISDEEF-LQFDTSGVPVITTLTKV--GKHYIVDATLEEESQ 174
H + A D Q V DE + + + P+ T GK I+DAT +EE
Sbjct: 160 --HFRRQDAVVKDGQVIVYGLDERVPVALNITHKPLSVTFHTFDEGKRVIIDATRKEEQA 217
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ V I IN G +C + K G +D V +D SVA
Sbjct: 218 AEADVVIGINNAGDVCFVSKFSGSPVDAMVFVDKTSVA 255
>gi|431899671|gb|ELK07625.1| Exosome complex exonuclease RRP45 [Pteropus alecto]
Length = 440
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|335293904|ref|XP_003129265.2| PREDICTED: exosome complex component RRP45-like [Sus scrofa]
Length = 440
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|68076189|ref|XP_680014.1| exoribonuclease PH [Plasmodium berghei strain ANKA]
gi|56500878|emb|CAH99972.1| exoribonuclease PH, putative [Plasmodium berghei]
Length = 281
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 17/232 (7%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L P D+G V + +DC + + E L S C+
Sbjct: 49 NNVICGIKLSLLPPEQHSIDEGFVNLQIDCPASVASNRIKK--EHLQIMTSIIYDLCI-- 104
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
ID L V+ K W + I+ +V++ G LLD + AI AL++ IP V
Sbjct: 105 -----KNNIDKKKLCVLPSKFVWGIDINVMVLNGGGGLLDIISIAIYVALNDMNIPVVKA 159
Query: 124 AAEA--------ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
+ ++ E++I + E L F +P+ ++ ++ YI D + EE +
Sbjct: 160 PKKIDELNMFHNTKSKEYELEIVENEKLPFPCENIPICISIGEINNKYIYDMSKIEEELV 219
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ +++ G K G+ ++ S IL+M + +S+ L K++ I
Sbjct: 220 ENVFVVAVTSSGKCVAFHKLYGISMEVSSILNMSENSVKISQNLFKKINEAI 271
>gi|297674268|ref|XP_002815154.1| PREDICTED: exosome complex component RRP45 isoform 3 [Pongo abelii]
gi|297674270|ref|XP_002815155.1| PREDICTED: exosome complex component RRP45 isoform 4 [Pongo abelii]
Length = 456
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREECVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|119192860|ref|XP_001247036.1| hypothetical protein CIMG_00807 [Coccidioides immitis RS]
gi|392863730|gb|EAS35502.2| exosome complex endonuclease 2/ribosomal RNA processing protein
[Coccidioides immitis RS]
Length = 292
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 14/212 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + AE+ P + G + ++ + A P FE +L +LS L
Sbjct: 51 LGRTTVIVRISAEVTAPRPERDSDGIFTVSIELNDMALPGFETGRQSDLETQLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G CW++ D ++ +DG L+D AI A L + IP
Sbjct: 111 V--RRSNA---LDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAGLLHFRIPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSSA 178
V+ + PE + + + + VP+ T L GK ++DAT EE+ A
Sbjct: 166 STVSDGKVTVYSPEEKVP----VPLNLTKVPLSITFNLYDEGKITLMDATSSEEAVSEGA 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMIS 210
V I++++ G I K G DP L+M++
Sbjct: 222 VIIALDKTGEIALYTKAEGTPADP---LNMVA 250
>gi|444721920|gb|ELW62627.1| Exosome complex component RRP45 [Tupaia chinensis]
Length = 438
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|350636872|gb|EHA25230.1| hypothetical protein ASPNIDRAFT_49678 [Aspergillus niger ATCC 1015]
Length = 292
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 19/218 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + AE+ +P +P G I ++ + P ++ GR G+ +++ L
Sbjct: 51 LGKTSLIVRISAEVTKPHDDRPFDGLFTIAMELTAMGSPAWDNGRQGD-FETYVTNVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D V DGNL+DA I A L
Sbjct: 110 VVRHSNA-----LDTESLCILKGVSCWSIRADVHVTDYDGNLIDAACIGIMAGLQ----- 159
Query: 120 SVHVAAEAA--SDEQPEVDISDEEF-LQFDTSGVPVITTLTKV--GKHYIVDATLEEESQ 174
H + A D Q V DE + + + P+ T GK I+DAT +EE
Sbjct: 160 --HFRRQDAVVKDGQVIVYGLDERVPVALNITHKPLSVTFHTFDEGKRVIIDATRKEEQA 217
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ V I IN G +C + K G +D V +D SVA
Sbjct: 218 AEADVVIGINNAGDVCFVSKFSGSPVDAMVFVDKTSVA 255
>gi|114595906|ref|XP_001154031.1| PREDICTED: exosome complex component RRP45 isoform 4 [Pan
troglodytes]
Length = 456
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|169783852|ref|XP_001826388.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus oryzae RIB40]
gi|238493679|ref|XP_002378076.1| exosome complex endonuclease 2, putative [Aspergillus flavus
NRRL3357]
gi|83775132|dbj|BAE65255.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220696570|gb|EED52912.1| exosome complex endonuclease 2, putative [Aspergillus flavus
NRRL3357]
gi|391869452|gb|EIT78650.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Aspergillus
oryzae 3.042]
Length = 292
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 15/216 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + +E+ +P +P G I ++ + P +E GR G+ L +S+ L
Sbjct: 51 LGKTSLIVRISSEVTKPHDDRPFDGIFTIALELTAMGSPAWENGRQGD-LETYVSNVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL V++G CW++ D + + DGNL+DA + A L + P
Sbjct: 110 VIRHSNA-----LDTESLCVLKGVSCWNVRADVHITNYDGNLIDAACIGVMAGLQHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMS 176
V D Q V DE + + + P+ T GK IVDAT +EE
Sbjct: 165 DAVV-----KDGQVIVYGVDERVPVALNITHKPLSVTFHTFDEGKRVIVDATRKEEQASE 219
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ V + +N G +C + K G + V ++ SVA
Sbjct: 220 ADVVMGLNNAGDVCYLSKFSGSPVSAMVFVNKSSVA 255
>gi|403290342|ref|XP_003936279.1| PREDICTED: exosome complex component RRP45 [Saimiri boliviensis
boliviensis]
Length = 440
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|397490989|ref|XP_003816463.1| PREDICTED: exosome complex component RRP45 isoform 3 [Pan paniscus]
Length = 392
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D + + DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|15218985|ref|NP_176216.1| 3' exoribonuclease domain 1-containing protein [Arabidopsis
thaliana]
gi|4249388|gb|AAD14485.1| Similar to gb|AF025438 Opa-interacting protein (OIP2) from Homo
sapiens [Arabidopsis thaliana]
gi|28416659|gb|AAO42860.1| At1g60080 [Arabidopsis thaliana]
gi|110735926|dbj|BAE99938.1| hypothetical protein [Arabidopsis thaliana]
gi|332195536|gb|AEE33657.1| 3' exoribonuclease domain 1-containing protein [Arabidopsis
thaliana]
Length = 302
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 16/211 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST ++A+++ E+ PS PD+G +AI P PT E + +S L
Sbjct: 67 IGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDT 126
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L + IDL L +V GK W Y+D + +DG L DA A AA SN IP
Sbjct: 127 IL-----SSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPI 181
Query: 121 V------HVAAEAASDEQPEVDISDEEFL-----QFDTSGVPVITTLTKVGKHYIVDATL 169
V + A +Q I+++E + + +P T + + D T
Sbjct: 182 VALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPTT 241
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGGVGL 200
EEES M + V++ ++ + K GG L
Sbjct: 242 EEESIMDTLVTVVLDSSDQMVSFYKSGGAAL 272
>gi|284161629|ref|YP_003400252.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
gi|284011626|gb|ADB57579.1| 3' exoribonuclease [Archaeoglobus profundus DSM 5631]
Length = 259
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 19/219 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK ++G P PD+G + + P A PTFE +E + EL+ +
Sbjct: 53 LGNTQVVAGVKMQIGEPFPDTPDQGIIITNAELVPLASPTFEPGPPDENAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DL L + EG+ W ++ID + DGNL+DA A AAL NT +P+
Sbjct: 113 IRHSEA-----VDLKKLCIEEGEKVWIIFIDIWALDDDGNLMDASALAAIAALLNTTVPA 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
E D +PV T +VD +E S + ++
Sbjct: 168 ERF--EVGDD------------FPLPVRDLPVAITSLVYDDKILVDPCRDELSVGKNTIT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
I+ ++ +I + K G L +++ V+ +R++
Sbjct: 214 ITTDQNDNIVSIQKSGPFLLSEKAFEEVLEVSIRKAREV 252
>gi|122920907|pdb|2NN6|A Chain A, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 358
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 67 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 126
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 127 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 181
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 182 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 237
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 238 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 271
>gi|397490987|ref|XP_003816462.1| PREDICTED: exosome complex component RRP45 isoform 2 [Pan paniscus]
Length = 456
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D + + DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|291401826|ref|XP_002717277.1| PREDICTED: exosome component 9 [Oryctolagus cuniculus]
Length = 440
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFCNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----MDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD T EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGMYLLVDPTEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|417400960|gb|JAA47389.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp45
[Desmodus rotundus]
Length = 440
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMASPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL V+ G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVIAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G +VD + EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSVHHMPICVSFAFFQQGTFLLVDPSEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTLQSSGGIML 242
>gi|397490985|ref|XP_003816461.1| PREDICTED: exosome complex component RRP45 isoform 1 [Pan paniscus]
Length = 439
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D + + DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLFNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|353237792|emb|CCA69757.1| probable RRP45-Exosome complex exonuclease [Piriformospora indica
DSM 11827]
Length = 313
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 44/246 (17%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+ASV+A++ +P+ +P +G + I + SP A +E GR +E ++ L
Sbjct: 51 MGKTRVLASVEAKMVKPTPDRPYEGTINIHSEFSPMASSEYEQGRTSDE-EVTITRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D SL VV G+ W L + +S GN+LD A AL + P
Sbjct: 110 VL--RRSDA---LDKESLCVVAGQRVWSLKLTVQFLSDAGNMLDCACLAGIVALRHFRKP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL----------TK----------- 158
V + E P+ L P+ T TK
Sbjct: 165 EVEIDGEEVIVHSPD----SRAPLPLAIHHTPICFTFALYSYQKLSVTKSKGTSSTTEQQ 220
Query: 159 ---------VGKHY---IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVIL 206
H ++D L EE+ +SI++N QG +C + K GGV LD S IL
Sbjct: 221 SISTVPSGSFSTHQTFALLDPILLEETLAHGTLSIALNAQGELCVLQKNGGVPLDQSEIL 280
Query: 207 DMISVA 212
+I++A
Sbjct: 281 RLINIA 286
>gi|254572173|ref|XP_002493196.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|238032994|emb|CAY71017.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328352789|emb|CCA39187.1| exosome complex component RRP45 [Komagataella pastoris CBS 7435]
Length = 298
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 23/229 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTF-EGRGGEELSAELSSALQH 59
+G V+ + +E+ P +P +G + + P+F E +E LS ++
Sbjct: 45 LGDAKVVVRISSEIVTPYEDRPFEGIFQVSSELDGMGHPSFNEASHRQEEEVMLSRLIEK 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +S A +DL SL ++ G+ CW + D +I DGN+ D + + A L + P
Sbjct: 105 AI--RRSNA---LDLESLCIIAGQKCWSVRADVHIIDYDGNMTDIVCIGVIAGLLHFKKP 159
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV------------GKHY-IVD 166
+ + D+S+ E + +P+ T G+ + IVD
Sbjct: 160 DISIRNGTVILH----DMSEREPVPLSVLHIPICVTFQIYSSGSMEDNVKGDGREFVIVD 215
Query: 167 ATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFV 215
ATL+EE+ +++++N +C M K GG+ L+ IL + + A +
Sbjct: 216 ATLKEEALTQGTITLTLNSNKELCQMSKSGGINLEVDEILSLTNEAQII 264
>gi|194378034|dbj|BAG63380.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|395324492|gb|EJF56931.1| ribosomal protein S5 domain 2-like protein [Dichomitus squalens
LYAD-421 SS1]
Length = 339
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 116/269 (43%), Gaps = 47/269 (17%)
Query: 2 GSTDVIASVKAELGR-PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G TDV+A+VK E+ S D G+VA V CSP+A +EL +L+ LQ
Sbjct: 64 GGTDVLAAVKLEVEDVESGDGVDGGRVACSVTCSPSAYSHLSSNALDELQHDLTVILQQT 123
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ A + S+L ++ G+ W L ID +V++ GN++DAL A +AAL +T +P
Sbjct: 124 I------AHRSLHPSNLTIIPGRKAWLLNIDAVVLADSGNVVDALFMAARAALWDTKVPR 177
Query: 121 VH----------------------------------VAAEAASDEQPEVDISDEEFLQFD 146
+A +AA E P D DE +
Sbjct: 178 TRPVEYRAPESSRATEKETQDSMDVDQGTSGFDTRDMARDAADFELP--DYWDEGEVLHG 235
Query: 147 TSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISIN---RQGHICGMIKRGGVG-LDP 202
P+ TL + +++DATL EE+ + + + + I I+ G G LD
Sbjct: 236 RERWPICVTLNLLPPIHLLDATLTEEASLPLRLHLMFSFPPSAPPILQAIRLLGPGELDL 295
Query: 203 SVILDMISVANFVSRQLMDKLDSEIAAAD 231
+ + I+ +R+L L+S++ D
Sbjct: 296 AYLKSCITDGEKYARELFSALESKLREED 324
>gi|241608403|ref|XP_002405972.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
gi|215500728|gb|EEC10222.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43, putative
[Ixodes scapularis]
Length = 425
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 13/201 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V +E+ P +P++G++ + ++ SP A P FE GR G + E++ L+
Sbjct: 51 LGETKVLAQVSSEVIVPKPNRPNEGELFVNLELSPMAAPHFEAGRLG-DFGVEIARLLER 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
C+ +DL SL +V + W L +D V++ GN+ + A AAL + P
Sbjct: 110 CVRDSHC-----VDLESLCIVAREKVWSLRVDVQVLNHRGNIAECASVATVAALLHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSS 177
V V + P + E + P + + GK +VD + EE
Sbjct: 165 DVTVVGTEVTVHDPR----EREPVPLHLHHYPYLMSFAFYDEGKTVLVDPSELEERIADG 220
Query: 178 AVSISINRQGHICGMIKRGGV 198
+++ +N IC + +RG +
Sbjct: 221 LLTLGVNAHYEICTLHQRGCI 241
>gi|328862357|gb|EGG11458.1| hypothetical protein MELLADRAFT_70820 [Melampsora larici-populina
98AG31]
Length = 292
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 18/204 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ ++ E+ P+ M P++G + ++ F+ E S + + L+
Sbjct: 79 IGNTSVLCGIRFEVSEPNFMNPNQGYIIPNIEIGSLCSSKFKPNQINEQSQTILTQLKMI 138
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + I+ SSLV+ K+ W +YID + +S+DGN+LDA +I AL P
Sbjct: 139 L-----KSSEIIEPSSLVIQPEKLVWVIYIDVICLSNDGNVLDASIISITQALQTAKRPQ 193
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV------GKHYIVDATLEEESQ 174
V E EV + D F F+ +P+ T+ + ++VD TL EE
Sbjct: 194 VEFDIETN-----EVILLDPNF--FEPIPIPLNHTIHPFTFSIFEKREWLVDPTLFEEDH 246
Query: 175 MSSAVSISINRQGHICGMIKRGGV 198
+V++ ++ + + ++ G V
Sbjct: 247 SKGSVTVVLDSKKKLRYLLVSGEV 270
>gi|383858184|ref|XP_003704582.1| PREDICTED: exosome complex component RRP45-like [Megachile
rotundata]
Length = 410
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T +A V ++ +P +P++G + I V+ + F+ E+S +S L+ C
Sbjct: 50 LGQTRAVAQVTCDIQQPKTSRPNEGMLHINVELNAMVTQNFDAGKQAEVSVLISRQLEKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
K IDL SL ++ K W+L +D +I+ DGNL+D A AALS+ P
Sbjct: 110 FKDSKC-----IDLESLCIIADKKVWNLRVDINIINHDGNLIDCASIATLAALSHFHRPD 164
Query: 121 VHVAAEAASDEQPEVDI---SDEEFLQFDTSGVPV-ITTLTKVGKHYIVDATLEEESQMS 176
V E E+ I +++ L PV ++ +T + ++D T EE
Sbjct: 165 VTSTGE-------EIIIHPFCEKDPLPLTIYHYPVCVSFITFESGNTVMDPTYMEERVGV 217
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMIS-----VANFVSRQLMDKLDSEIA 228
+ +++ IN +C + I D+IS AN+ + +L+ ++ E+A
Sbjct: 218 AQLTLGINSYRELCSL--HFNYLTKTMTIQDVISAVSSYAANYAT-ELVQQIKEEVA 271
>gi|149698257|ref|XP_001503169.1| PREDICTED: exosome complex component RRP45-like [Equus caballus]
Length = 440
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ +++N+ IC + GG+ L +L +A
Sbjct: 221 LVLAMNKHREICTIQSSGGIMLLKEQVLRCSKIA 254
>gi|367002015|ref|XP_003685742.1| hypothetical protein TPHA_0E02160 [Tetrapisispora phaffii CBS 4417]
gi|357524041|emb|CCE63308.1| hypothetical protein TPHA_0E02160 [Tetrapisispora phaffii CBS 4417]
Length = 303
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 32/242 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG---RGGEEL--SAELSS 55
+G T V V + +P +P +G I + SP A P FE G +E+ S +
Sbjct: 51 LGKTKVQCRVSCSITQPYEDRPFEGLFIISTEMSPMAGPQFENGSNTGDDEVLCSRIIEK 110
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
A++ +SGA +D+ L +V G CW + D V+ DG ++DA A+ AL +
Sbjct: 111 AIR------RSGA---LDVEGLCIVAGSKCWAIRADVHVLDCDGGIIDASCLAVICALLH 161
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH------------- 162
P V + E + P I++ E + +P+ T +
Sbjct: 162 FRKPDVSILGEQVT-VHP---INEREPVALGILHIPICVTFSFFNPQDVEENIKGAGNNE 217
Query: 163 -YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
I+DATL+EES +++++N+ + + K GG+ +D ++D A ++ ++ D
Sbjct: 218 IAIIDATLKEESLRDGVLTVTLNKNREVVQVSKAGGLPMDALSLMDCCHKAYDITERITD 277
Query: 222 KL 223
++
Sbjct: 278 QI 279
>gi|77812670|ref|NP_005024.2| exosome complex component RRP45 isoform 2 [Homo sapiens]
gi|147744559|sp|Q06265.3|EXOS9_HUMAN RecName: Full=Exosome complex component RRP45; AltName:
Full=Autoantigen PM/Scl 1; AltName: Full=Exosome
component 9; AltName: Full=P75 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 1; AltName:
Full=Polymyositis/scleroderma autoantigen 75 kDa;
Short=PM/Scl-75
gi|28172864|emb|CAD44530.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
gi|119625653|gb|EAX05248.1| exosome component 9, isoform CRA_b [Homo sapiens]
Length = 439
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|119625657|gb|EAX05252.1| exosome component 9, isoform CRA_f [Homo sapiens]
Length = 423
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 34 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 93
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 94 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 148
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 149 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 204
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 205 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 238
>gi|24642649|ref|NP_573163.1| Rrp45 [Drosophila melanogaster]
gi|19527801|gb|AAL90015.1| AT07738p [Drosophila melanogaster]
gi|22832411|gb|AAF48665.2| Rrp45 [Drosophila melanogaster]
gi|220949552|gb|ACL87319.1| Rrp45-PA [synthetic construct]
gi|220958432|gb|ACL91759.1| Rrp45-PA [synthetic construct]
Length = 412
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 104/244 (42%), Gaps = 37/244 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAI--------FVDCSPTAEPTFEGRGGEELSAE 52
MG T V+A V E+G P+ +P++GK+ + F+D A T + R S +
Sbjct: 56 MGDTKVLAQVTCEMGPPALSRPNEGKIHLNVYLGGVAFLD---EAHTTHDQR-----SLK 107
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAA 112
L+S L+ +S IDL SL V K W + ++ V++ DGNL DA A AA
Sbjct: 108 LNSLLERTFRSSRS-----IDLESLCVAVEKHVWCIRVNVNVLNHDGNLYDASTIATLAA 162
Query: 113 LSNTGIPSVHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLE 170
L + P V E + EF L F V V + K I+D TL
Sbjct: 163 LMHFRRPDVWYK----DGELRIFKKKEREFIPLLFHHYPVSVTYCVYKSSVQPILDPTLL 218
Query: 171 EESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMI--------SVANFVSRQLMDK 222
EE+ S + +S N +C + G + +I+ S+ NFV + L
Sbjct: 219 EENAADSVIVLSFNSFQELCSLTAGGTAPTNARIIMQCARNAAVRCKSLLNFVRKALA-- 276
Query: 223 LDSE 226
LD E
Sbjct: 277 LDEE 280
>gi|308502001|ref|XP_003113185.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
gi|308265486|gb|EFP09439.1| CRE-EXOS-9 protein [Caenorhabditis remanei]
Length = 432
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 29/203 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE----GRGGEELSAELSSA 56
+G+T V+A+V A++ PS+M+P+KG + I VD SP A E G G EL L
Sbjct: 50 IGNTKVMAAVSAQIAEPSSMRPNKGVINIDVDLSPMANVANEHDRLGSKGMELIRLLELI 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ ID+ SL + G W + +D ++ DG+LLD A AL +
Sbjct: 110 IRD---------SRCIDVESLCIRAGSEIWKVRVDVRILDEDGSLLDCACLAAITALQHF 160
Query: 117 GIPSV-----HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATL 169
P+V H + ++ P + + +P+ TT L G+ ++D T
Sbjct: 161 KRPNVSLEAHHTLIYSEYEKAP---------VPLNIYHMPICTTIGLLDKGQMVVIDPTE 211
Query: 170 EEESQMSSAVSISINRQGHICGM 192
+E + + ++ ++ N++ +C +
Sbjct: 212 KEAACLDGSIVVACNKRREVCAL 234
>gi|268562221|ref|XP_002638538.1| C. briggsae CBR-EXOS-7 protein [Caenorhabditis briggsae]
Length = 300
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 21/225 (9%)
Query: 3 STDVIASVKAELGR--PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+TDV+A +K EL P+A + K ++ VD S A F G+GG++ E+S+A Q
Sbjct: 55 TTDVLAGIKLELESFDPAAEKEAKQPMSFHVDFSANASSQFAGKGGDQYGEEISAAFQ-- 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +LS ++ EG W + +D V+ G++ DA AI ALS+ +P
Sbjct: 113 -VAFSRSLDILPNLSKTLLAEGYR-WKINVDLSVLQWAGSVPDACSLAIIGALSDLEVPE 170
Query: 121 VHVAAEAASD-----EQPEV--DISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEE- 172
V VA + ++P ++ DEE + P++ T++K+G +VD + EEE
Sbjct: 171 VEVAPDDGGKVSIVLKRPRTGGNMRDEE---VPVAICPMLLTVSKIGSANLVDCSPEEEC 227
Query: 173 ---SQMSSAVSISINRQGHICGMIKRGGVG-LDPSVILDMISVAN 213
SQ+ V+ ++N + IK+ G G L+ I DM +A+
Sbjct: 228 CIRSQLLIGVAKNLNVDDYDITCIKQHGGGLLEMESIQDMTELAS 272
>gi|77812672|ref|NP_001029366.1| exosome complex component RRP45 isoform 1 [Homo sapiens]
gi|28172868|emb|CAD56889.1| polymyositis/scleroderma autoantigen 1 [Homo sapiens]
gi|119625652|gb|EAX05247.1| exosome component 9, isoform CRA_a [Homo sapiens]
Length = 456
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|410671928|ref|YP_006924299.1| 3' exoribonuclease [Methanolobus psychrophilus R15]
gi|409171056|gb|AFV24931.1| 3' exoribonuclease [Methanolobus psychrophilus R15]
Length = 255
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 19/195 (9%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T+V+ VK + G P +G + ++ +P A P FE +E + E++ +
Sbjct: 49 GETEVLVGVKVQAGAPFPDSAGEGVIITSLELNPLASPEFEAGPPKEGAIEMARVTDRGI 108
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
+SGA IDLS L + +G+ W ++ID V++ GN+ DA AAL T IP
Sbjct: 109 R--ESGA---IDLSKLCITKGEEVWIIFIDIHVLNDAGNIQDASSLGAIAALMTTTIP-- 161
Query: 122 HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSI 181
A E + + D P+ TL +G +VD +EE+ + ++I
Sbjct: 162 --AERNGKGEDMAMPMRD----------TPLAITLVNIGGSLMVDPGRDEETVCDTKITI 209
Query: 182 SINRQGHICGMIKRG 196
N+ G I GM K G
Sbjct: 210 VSNQDGSISGMQKSG 224
>gi|146218577|gb|AAI40040.1| Exosome component 9 [synthetic construct]
gi|146218579|gb|AAI40039.1| Exosome component 9 [synthetic construct]
gi|148745755|gb|AAI42979.1| Exosome component 9 [Homo sapiens]
Length = 439
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGAYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|82752803|ref|XP_727434.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483275|gb|EAA18999.1| similar to S. cerevisiae RRP45, putative [Plasmodium yoelii yoelii]
Length = 391
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 15/216 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ + +E+ +P +P++G + I +D + + E+ + ++
Sbjct: 47 IGNTKVVCKITSEIVKPYDKKPNEGIIKINLDVESFNTYNNDISKITDECLEIKNLIERI 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
A ++ SL ++ K W L I+ VI +DGNL D+ + +AL + +
Sbjct: 107 F-----KASNILNFESLCIIPYKKVWCLLINITVIENDGNLYDSCYLSAYSALLHFRNNN 161
Query: 121 VHVAAEAASDEQPEVDISDEE--FLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQMS 176
V++ D V I +EE + P++TT I +D +L EE MS
Sbjct: 162 VNI------DNTGNVIIDEEEVNYTSLSVHNSPILTTFAYFNFEEICLIDPSLYEEEFMS 215
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
S +SI+IN+ ++ ++K GG+ + IL I +A
Sbjct: 216 SKLSIAINKNENLISILKPGGLPISYDTILQGIELA 251
>gi|389612638|dbj|BAM19744.1| unknown protein, partial [Papilio xuthus]
Length = 204
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 16/198 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T VI K EL P A PD G + V+ P P F + + +S+ +
Sbjct: 17 YGNTTVICGTKLELAAPKAEDPDSGFLVTNVELVPLCSPKFRPGPPSDHAQVISNVVSEI 76
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I+L L +V K+ W LY D + + +DGN++DA A+ A+L +P+
Sbjct: 77 INNSKF-----INLKDLCIVSDKLAWVLYCDIVCLDNDGNVVDACITALTASLKTLSLPT 131
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH----YIVDA-TLEEESQM 175
V E E+ +VD ++ + +G+PV T+ + D T EEE
Sbjct: 132 VTYDPET---EEIKVDTNNR--ISLKVNGLPVATSFAIFPNCERSILLTDPNTFEEEMCG 186
Query: 176 SSAVSISIN-RQGHICGM 192
+ +I+++ G +CG
Sbjct: 187 GNGANITVSWNNGFLCGY 204
>gi|170109350|ref|XP_001885882.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639153|gb|EDR03426.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 282
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 20/234 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V+A++ +P+ +P +G + I + P A +E GR +E ++ L
Sbjct: 50 LGKTRVLAQVEAKMVKPAPERPFQGTITIHSEILPMASSEYEPGRPSDE-EVTITRMLDK 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D SL ++ G+ W + + ++ GN+LD A AL + P
Sbjct: 109 VL--KRSDA---VDKESLCILAGQRVWHIRLTLHFLADAGNMLDCACLAGITALQHFRRP 163
Query: 120 SVHVA-----AEAASDEQP-EVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
V V + D P + I F F + P ITT ++D E+
Sbjct: 164 DVEVVGDEVIVHSPWDRAPVPLAIHHTPFC-FTFAFFPDITTPP------VLDPNQLEQR 216
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ VSI++N Q IC + K GGV L+ +L +++VA +++L LD+++
Sbjct: 217 LSAGFVSIALNAQKEICVLQKLGGVPLETEEVLTLVNVAVGKAKELHGFLDTQL 270
>gi|449549379|gb|EMD40344.1| hypothetical protein CERSUDRAFT_148276 [Ceriporiopsis subvermispora
B]
Length = 291
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 18/203 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ P P+ G + +D P F+ E + +S L
Sbjct: 73 LGDTTIVCGVKAEIAEPELDSPEAGFIVPNLDLPAICSPKFKPGPPTEEAQVISDRLNEV 132
Query: 61 LLGGKSGAGAGI-DLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ AGI SSL + GK W LYID I+ DGN DA A+ AAL NT +P
Sbjct: 133 LVT------AGIVSPSSLCIQPGKAAWVLYIDATCINYDGNAFDATLLAMVAALKNTRLP 186
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQ-FDTSGVPVITTLTKV-GKHYIVDATLEEESQMSS 177
+A DE+ + + + +P T G H + D T EE + +
Sbjct: 187 ------KARFDEEAGRTVCSRKVKEPLHIGRLPTAMTFGIFDGTHVLSDPTSFEEPLLDT 240
Query: 178 AVSISINRQGHICGMIKRGGVGL 200
+S++++ G G++ VGL
Sbjct: 241 VLSVTVDESG---GLVSVTQVGL 260
>gi|432097876|gb|ELK27905.1| Exosome complex component RRP45 [Myotis davidii]
Length = 423
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 33 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 92
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 93 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 147
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G +VD + EE M
Sbjct: 148 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTFLLVDPSEREERVMDGL 203
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 204 LVIAVNKHREICTIQSSGGIMLLNEQVLRCSKIA 237
>gi|67609743|ref|XP_667059.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis
TU502]
gi|54658150|gb|EAL36827.1| polymyositis/scleroderma autoantigen 1 [Cryptosporidium hominis]
Length = 408
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 22/240 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSP-TAEPTFEG--RGGEELSAELSSAL 57
+G T V++ VK+EL PS + +G ++ VD P + PT L E+++ +
Sbjct: 41 IGRTHVLSVVKSELVAPSQERSSEGFISFTVDIGPLSINPTSHAFRHNRTTLGTEIANYI 100
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ L ++GA ID L ++ G W + + V+ DGNL DA A + L +
Sbjct: 101 ERTL--KETGA---IDTEILCILSGVCVWSVKCEIHVLFDDGNLFDACLMATLSGLKHYR 155
Query: 118 IPSVHVAA----------EAASDEQPEVDISDEEFLQFDTSGVPVITTLT----KVGKHY 163
+ V + E ++ E I E + F+ P+ ++ K G Y
Sbjct: 156 YNEIDVDSFLKKSKCEGLEERDYQRLENTIRKLEMIPFNVHHFPLSISIGYINGKEGLSY 215
Query: 164 IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
IVD +EES + + ISIN + +CG+ K GG L + I I +A S +L +
Sbjct: 216 IVDPNSDEESISDTIIHISINDKQEVCGISKFGGAKLSLNQINFAIQIATIHSEKLHQEF 275
>gi|195567204|ref|XP_002107160.1| GD15722 [Drosophila simulans]
gi|194204561|gb|EDX18137.1| GD15722 [Drosophila simulans]
Length = 407
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 105/241 (43%), Gaps = 33/241 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAI--------FVDCSPTAEPTFEGRGGEELSAE 52
MG T V+A V E+G PS +P++GK+ + F+D A T + R S +
Sbjct: 56 MGDTKVMAQVICEMGLPSLSRPNEGKLQLNVLLGGVAFLD---EAYSTHDQR-----SLK 107
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAA 112
L+S L+ K IDL SL V K W + ++ VI+ DGNL DA A AA
Sbjct: 108 LNSLLERTFRSSKC-----IDLESLCVAAEKHVWCIRVNVNVINHDGNLYDASSIATLAA 162
Query: 113 LSNTGIPSVHVAAEAASDEQPEVDISDE---EF--LQFDTSGVPVITTLTKVGKHYIVDA 167
L + P V S + E+ I + EF L F V V + K I+D
Sbjct: 163 LMHFRRPDV-------SYKDGELRIFKQNGLEFTPLLFHHYPVSVTYCVYKSSGQPILDP 215
Query: 168 TLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
TL EE+ S + +S N +C + G + +++ A + L+D + +
Sbjct: 216 TLLEENAADSVIVLSFNSYQELCSLTAGGTAPTNAPIVMQCARNAAARCKSLLDFVRKAL 275
Query: 228 A 228
A
Sbjct: 276 A 276
>gi|340344305|ref|ZP_08667437.1| 3' exoribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519446|gb|EGP93169.1| 3' exoribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 272
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 22/205 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFE-GRGGEELSAELSS 55
+G ++VI VK + RP PD G IF+ C+ P + PT E G G ++ EL+
Sbjct: 54 LGDSEVICGVKIQPDRPF---PDMGDKGIFI-CTAELLPLSHPTVETGPPGPDV-IELAR 108
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
+ + IDL+ LV+ + K ++ D +V+ DGNL DA A AA+ +
Sbjct: 109 VVDRGIR-----ESHMIDLTQLVIEKNKSVVGVFADNVVVDYDGNLFDACAYAATAAILS 163
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
+ P + + + + + E S +PV T+ K+G H IVD +E S M
Sbjct: 164 SKTPKWEMKNDVPT-------LVEGEESDVPISTIPVSVTMGKIGNHIIVDPNGDEWSSM 216
Query: 176 SSAVSISINRQGHICGMIKRGGVGL 200
+ ++I+ + G+IC + K G G
Sbjct: 217 DARITITTDSNGNICALQKGGNDGF 241
>gi|315050464|ref|XP_003174606.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
gi|311339921|gb|EFQ99123.1| exosome complex exonuclease RRP45 [Arthroderma gypseum CBS 118893]
Length = 292
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 13/231 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AEL P + G + V+ + A P +E EL LS L
Sbjct: 51 LGKTTVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G +CW++ D ++ DG L+DA AI A L + +P
Sbjct: 111 V--RRSNA---LDTESLCISKGMICWNVRADIHILDCDGGLVDASCLAIMAGLLHFRLPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSS 177
V D + V ++E+ +Q + + +P+ T L GK ++DAT EE+
Sbjct: 166 STV-----RDGEVTVFTTEEKVPVQLNLTKIPLSVTFNLYDEGKIMLLDATTSEEAVSEG 220
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
++ +++++ G I K G DP ++ ++A R+L L + +A
Sbjct: 221 SLVVALDKTGEIALYSKPDGAPADPVNMVSSSTLALEKVRELNKLLSARLA 271
>gi|392568344|gb|EIW61518.1| hypothetical protein TRAVEDRAFT_35012 [Trametes versicolor
FP-101664 SS1]
Length = 287
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 13/198 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ VKAE+ P +P+ G + +D P F+ + + LS L
Sbjct: 69 LGSTTVVCGVKAEIAEPELDRPEHGFLVPNLDLPAICSPKFKPGPPTDEAQVLSDRLNEV 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG + SL + GK W LY+D I+ DGN DA A+ AAL +T +P
Sbjct: 129 LVS--SGV---VSTKSLCIEPGKAVWVLYVDATCINYDGNAFDATLLAMVAALKSTTLP- 182
Query: 121 VHVAAEAASDEQPEVDISDEEFLQ-FDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSA 178
+A DE+ + I + + +P + G H + D T EE + +
Sbjct: 183 -----KATYDEETKRTICSRKVQEPLQIGRLPTSFSFGVFDGTHILADPTSFEEPLLDTT 237
Query: 179 VSISINRQGHICGMIKRG 196
+S+ ++ G + +++ G
Sbjct: 238 ISVVVDESGGLTSVMQLG 255
>gi|426231206|ref|XP_004009631.1| PREDICTED: exosome complex component RRP45 [Ovis aries]
Length = 440
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V DE + + + + +P+ + + G + +VD + EE M
Sbjct: 165 VSVQG----DEVTLYTLEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|440908962|gb|ELR58930.1| Exosome complex exonuclease RRP45 [Bos grunniens mutus]
Length = 446
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V DE + + + + +P+ + + G + +VD + EE M
Sbjct: 165 VSVQG----DEVTLYTLEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|296486842|tpg|DAA28955.1| TPA: exosome complex exonuclease RRP45 [Bos taurus]
Length = 440
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V DE + + + + +P+ + + G + +VD + EE M
Sbjct: 165 VSVQG----DEVTLYTLEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|78045505|ref|NP_001030225.1| exosome complex component RRP45 [Bos taurus]
gi|122140086|sp|Q3SWZ4.1|EXOS9_BOVIN RecName: Full=Exosome complex component RRP45; AltName:
Full=Exosome component 9
gi|74356309|gb|AAI04588.1| Exosome component 9 [Bos taurus]
Length = 440
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V DE + + + + +P+ + + G + +VD + EE M
Sbjct: 165 VSVQG----DEVTLYTLEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|195457250|ref|XP_002075492.1| GK14785 [Drosophila willistoni]
gi|194171577|gb|EDW86478.1| GK14785 [Drosophila willistoni]
Length = 415
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 100/232 (43%), Gaps = 24/232 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++G PS+ +P++G + + V A ++ L+S L+
Sbjct: 56 IGDTKVLAQVSCDIGTPSSARPNEGTLHLNVSLGGVAYLNESQTTHDQRFLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S +DL SL V + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRNSRS-----LDLESLCVAAEQHVWCVRVDITVLNHDGNLYDASTVAALAALMHFRRPD 170
Query: 121 VHVAAEAASDEQPEVDI-SDEE-------FLQFDTSGVPVITTLTKVGKHY-IVDATLEE 171
V E E+ I SD+E FL + S V L K HY VD L E
Sbjct: 171 VTFLDE-------EIRIYSDKERELIPLLFLHYPVS---VTYCLYKSNSHYPYVDPILLE 220
Query: 172 ESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
E+ S + +S N +C + G +I+ A S+ L+D L
Sbjct: 221 ENAADSIIVLSFNSYNELCSLNAGGSTPTKAGIIMQCARNAAKRSKSLVDFL 272
>gi|118371223|ref|XP_001018811.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89300578|gb|EAR98566.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 776
Score = 68.2 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 15/209 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTA-EPTFEGRGGEELSAELSSALQH 59
+G T +I AE+ +P +P++G + VD S E ++ S E+ L+
Sbjct: 493 IGDTHIITKTTAEIIQPKQEKPNEGSLKFNVDLSSMQDEQQPNNVNIKKYSNEIQKLLEK 552
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G K+ ID+ SL +V K W + +D V+S+ GNL+DA+ ++ +L + P
Sbjct: 553 IIKGSKA-----IDMESLCIVTNKRVWSINVDSSVVSNGGNLIDAIYLSVIISLLHFRKP 607
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQ-FDTSGVPVITTLTKVGKHYIV--DATLEEESQMS 176
V V ++Q + I E+ Q +P+ T K ++ D + EE M
Sbjct: 608 YVSV------EQQSNIKIHTEKNPQPLSIHHIPIPFTFAFFKKSTLLVSDPLVLEEQIME 661
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVI 205
++IS+N +C + K GG + +I
Sbjct: 662 GRLTISVNIYNDVCNIHKPGGAPIKLELI 690
>gi|341877085|gb|EGT33020.1| CBN-EXOS-7 protein [Caenorhabditis brenneri]
Length = 310
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 25/250 (10%)
Query: 3 STDVIASVKAEL-GRPSAMQPD-KGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+TD++ +K EL SA + + K + VD S A F G+GG++ E+S+A Q
Sbjct: 55 TTDILTGIKLELESYDSATEKEAKQPMQFHVDFSANASSQFAGKGGDQYGEEISAAFQ-- 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +LS + EG W + +D V+ G++ DA+ A+ ALS+ IP
Sbjct: 113 -VAYSRSLDIMSNLSKTHLAEGYR-WKINVDVSVLQWAGSIPDAISLAVIGALSDLEIPE 170
Query: 121 VHVAAEAASD-----EQPEV--DISDEE----FLQFDTSGVPVITTLTKVGKHYIVDATL 169
V VA + ++P + ++ DEE + D P++ T++K+G +VD +
Sbjct: 171 VEVAPDDGGKVSIVLKRPRIGGNVRDEEVPVQMWRLDVQSCPLLLTISKIGTANLVDCSP 230
Query: 170 EEESQMSSAVSISI--------NRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
EEE + S + I I N + + GG L+ I +MI +A S L +
Sbjct: 231 EEECCIRSQLLIGIAKSVSTPGNDTYQTTCIKQLGGGLLEMESIENMIEMAQKTSIGLYE 290
Query: 222 KLDSEIAAAD 231
L + A +
Sbjct: 291 ALAKRLKAEE 300
>gi|390601634|gb|EIN11028.1| hypothetical protein PUNSTDRAFT_142893 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 284
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 25/230 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G T ++ VKAE+ P P G + +D CSP +P + LS + +
Sbjct: 71 LGDTTIVCGVKAEIAEPDLNSPSAGFLVPNIDLPAICSPKFKPGPPSEEAQVLSEKFNDI 130
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L L G + L SL + GK CW LY+D I+ DGN DA A+ +AL +T
Sbjct: 131 LT---LSGL------LPLESLCIHPGKSCWVLYVDATCINYDGNAFDAALIAMVSALKDT 181
Query: 117 GIPSVHVAAEAASDE---QPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
+P +A+ DE + S+ L VPV L H + D T EE
Sbjct: 182 SLP------KASYDEDSGRTTCSRSEAMPLPLRQPPVPVSFGLFN-SNHLLADPTSFEEP 234
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ + +++ N G + + + G+ D S++ I A S+ L D++
Sbjct: 235 LLDTTITVIHNDIGELVN-VTQLGLASD-SILSSCIDAAKARSKALCDQI 282
>gi|395845692|ref|XP_003795559.1| PREDICTED: exosome complex component RRP45 [Otolemur garnettii]
Length = 439
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A ALS+ P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALSHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V DE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQG----DEVTLYTHEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>gi|353239012|emb|CCA70939.1| related to Exosome complex exonuclease RRP43 [Piriformospora indica
DSM 11827]
Length = 279
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 78/182 (42%), Gaps = 11/182 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ P P +G + V+ S F+ E + +S L
Sbjct: 55 LGETTIVCGVKAEIAEPDLDAPTRGFIVPNVEISAICAARFKPGPPSEEAQIISEQLNQI 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K + L SL + K W +YID + I+ DGN LDA A+ ALSNT +P
Sbjct: 115 IAKSKC-----LPLDSLCIEPRKAVWTIYIDAVCINYDGNALDATLLAMTTALSNTQLPQ 169
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSAV 179
D++ V S +P TT KH +VD T EE + S V
Sbjct: 170 ARY-----DDDKKMVLCSRMNKTPLALKTLPTATTFGIFESKHLLVDPTSFEEPLLESTV 224
Query: 180 SI 181
++
Sbjct: 225 TV 226
>gi|213408869|ref|XP_002175205.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
yFS275]
gi|212003252|gb|EEB08912.1| exosome complex exonuclease RRP43 [Schizosaccharomyces japonicus
yFS275]
Length = 274
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 20/218 (9%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSAL---- 57
G + + +KAE+ P P +G + V+ P F+ EL+ +S +
Sbjct: 63 GESVFVCGIKAEIAEPELEAPSRGWIVPNVEMGPLCNGKFKPGPPRELAQVVSEQMNQVL 122
Query: 58 -QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
Q CL + L SL + E K W LY D + ++ DGN D A+ AL T
Sbjct: 123 EQTCL----------VPLESLCIREKKAAWCLYADIVCLNYDGNAFDCAWKALMHALETT 172
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQ-FDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
+P+V V E DE+ V + DE S + T G + D T +EES
Sbjct: 173 RLPAV-VWDE---DEERVVCVHDERAKHPLALSSHIESFSWTVFGNCVLADPTDDEESLC 228
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213
++I ++ G IC ++K GG + ++ + +A
Sbjct: 229 VERLTIMLDNAGRICKLVKMGGTHIQKGLLKGCLQIAK 266
>gi|325184014|emb|CCA18471.1| exosome complex exonuclease RRP45like protein putati [Albugo
laibachii Nc14]
Length = 473
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 30/230 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A+V E+ P +P +G VD SP A FE LS EL+ +
Sbjct: 58 LGNTRVLANVHGEIVTPFPDRPTEGFFNTSVDLSPMASQNFETGRPSSLSIELAKMIDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + D +L ++ G+ W +Y + VI DGNL DA+ A AAL + P
Sbjct: 118 IRDCR-----AFDTEALAILAGEKVWAIYCEVHVIDHDGNLTDAVQIASIAALMHFRRPD 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT-----SGVPV------ITTLTKVGKH------- 162
+ + + ++ DI + F +DT +P+ + T + K+
Sbjct: 173 LSLELQKENE-----DIKN--FEAYDTIPLSLHHIPLSVSFSYMLTRDNMDKNDGSSSPL 225
Query: 163 YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ +D T EE M+ ++ N +C + K GG + IL +A
Sbjct: 226 FFMDPTSREEQVMNGVITFIFNSFRELCAVHKNGGAPISTEDILRCAQIA 275
>gi|393215116|gb|EJD00608.1| hypothetical protein FOMMEDRAFT_112158 [Fomitiporia mediterranea
MF3/22]
Length = 282
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 28/222 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V A++ +P +P +G + I + SP A FE GR EE ++ L+
Sbjct: 50 LGKTRVLAHVDAKMVKPPEERPLEGIITIHSEISPMASSDFEPGRPSEE-EVLITRMLEK 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D SL V+ G+ W L + ++ GN+LD A AL + P
Sbjct: 109 VL--RRSDA---VDKESLCVLAGQRVWHLRLTIHFLADAGNMLDCACLAGMVALKHFRRP 163
Query: 120 SVHVAAEAASDEQPE----VDISDEE------FLQFDTSGVPVITTLTKVGKHYIVDATL 169
V V + + PE V +S F FD P I+D
Sbjct: 164 EVEVIGDEVTLHSPEERAPVPLSLHHTPFCLTFAYFDEPDTP-----------SILDPAR 212
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISV 211
E++ + +S+++N Q +C + K GGV L IL MI V
Sbjct: 213 LEQTLATGTLSLALNAQRELCVVQKAGGVPLAQEEILRMIDV 254
>gi|221058609|ref|XP_002259950.1| exoribonuclease PH [Plasmodium knowlesi strain H]
gi|193810023|emb|CAQ41217.1| exoribonuclease PH, putative [Plasmodium knowlesi strain H]
Length = 281
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 103/235 (43%), Gaps = 21/235 (8%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L PS PD+G + + +DC + + ++ + + L CL
Sbjct: 49 NNVICGIKLSLLTPSLDAPDEGVINLQIDCPASVAANRIKKDHLQIMSSIIYDL--CL-- 104
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
ID L ++ K W + I +V+++ G LLD + AI AL +T +P V
Sbjct: 105 -----KNNIDRKKLCILPSKFVWGVDISVMVLNAGGGLLDIISMAIYVALKDTVVPV--V 157
Query: 124 AAEAASDEQP----------EVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
+ DE +++I + + F VP+ ++ ++ Y+ D + EE
Sbjct: 158 KPKRKIDESNTFHHTKCADYQIEIVENQKTDFPYENVPICVSIGEINNKYVYDMSKVEEE 217
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+ + +++ G K G+ ++ + IL+M ++ +S L +K++ I
Sbjct: 218 LVENIFVVAVTSSGKCVAFHKLYGISMEIASILNMTENSSKISHHLFEKINEAIV 272
>gi|409041875|gb|EKM51360.1| hypothetical protein PHACADRAFT_129278 [Phanerochaete carnosa
HHB-10118-sp]
Length = 283
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 14/223 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+A V ++ +P+ +P +G + I + SP A +E GR +E ++ L
Sbjct: 51 MGKTRVLAQVDGKMVKPTPERPLEGIITINSEISPMASSEYEPGRPSDE-EVTMTRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D SL V G+ W L + ++ GNLLD A AL + P
Sbjct: 110 VL--RRSDA---VDKESLCVQAGQRVWHLRLTIHCLADAGNLLDCACLAGIVALKHYRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK---VGKHYIVDATLEEESQMS 176
V V + + P S+ + P T ++D +L E+ +
Sbjct: 165 EVEVVGDEVTIHHP----SERAPVSLSLHHTPYCFTFAYFPDTSTQAVLDPSLLEQRLSA 220
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+SI++N Q +C + K GGV L P +L ++ +A +++L
Sbjct: 221 GVLSIALNAQRELCVVQKAGGVPLAPDEVLRIVDIAVQKAKEL 263
>gi|328861810|gb|EGG10912.1| hypothetical protein MELLADRAFT_33545 [Melampsora larici-populina
98AG31]
Length = 286
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 19/226 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V A V A + RP +P +G + + + +P A +E GR E+ LS L
Sbjct: 51 LGRTRVSAHVSATITRPRPDRPFEGLLQVSAEINPLASFVYEIGRASED-EVHLSRLLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ +SG ID +L ++ G+ W + +D ++ +GN+LD A AAL N P
Sbjct: 110 TLV--RSGV---IDREALCILAGQKVWCIRVDLHFLNDEGNMLDCASVAAIAALQNFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMS 176
+ + E + V DE + +P+ T ++ YI+ E Q+S
Sbjct: 165 DITLVGEEIT-----VHSFDERLPIPLTLHHLPICLTFAFFELPASYILLDPSRLEQQLS 219
Query: 177 S-AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
+ +++++N Q IC + K GG+ PS + +++ V SR++ +
Sbjct: 220 TGTMTLTLNAQREICVINKSGGM---PSDVEEIMRVVRIGSRRVQE 262
>gi|68074995|ref|XP_679414.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56500153|emb|CAI00593.1| exosome complex exonuclease, putative [Plasmodium berghei]
Length = 511
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 16/216 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ + +E+ +P +P++G + I +D + +E E+ + ++
Sbjct: 47 IGNTKVVCKITSEIVKPYDKKPNEGIIKINLDVESFNTYNDISKISDE-CLEIKNLIERI 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
A ++ SL ++ K W L I+ VI +DGNL D+ + +AL + S
Sbjct: 106 F-----KASNILNFESLCIIPYKKVWCLLINITVIENDGNLYDSCYLSAYSALLHFRNSS 160
Query: 121 VHVAAEAASDEQPEVDISDEE--FLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQMS 176
V + D V I +EE + P++TT I +D +L EE MS
Sbjct: 161 VDI------DNTGNVIIDEEEVNYTSLSVHNSPILTTFAYFNFEEICLIDPSLYEEEFMS 214
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
S +SI+IN+ ++ ++K GG+ + IL I +A
Sbjct: 215 SKLSIAINKNENLISILKPGGLPISYDKILQGIELA 250
>gi|347967668|ref|XP_312616.5| AGAP002348-PA [Anopheles gambiae str. PEST]
gi|333468355|gb|EAA07626.5| AGAP002348-PA [Anopheles gambiae str. PEST]
Length = 439
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 12/239 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T +A + E+ P A +P++G + + V+ P A P F+G + +L+ L+
Sbjct: 50 LGETRALARITCEVVEPKATRPNEGMLFLNVELGPMAAPHFDGGRQSDECVQLNRILERA 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +DL SL +V + W L +D V++ +GN +D A AL++ P
Sbjct: 110 LKDSNC-----VDLESLCLVSEEKVWKLRVDVTVLNHEGNAIDCCSIAALTALAHFKRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSSA 178
+ V E I +++ L+ P+ + + GK I D T EE +
Sbjct: 165 ITVDGEDVIVHT----IEEKDPLKVTLFHYPLCVSYAIFNQGKIAIADPTYLEERVAEAR 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
+ +N G +CG+ G ++L + A+ +R +++++ + I DA++ E
Sbjct: 221 MVFGLNSYGELCGLHLGGTTLTSAELLLRTSAKASKRARLVVERIKAAI-QKDAEDREK 278
>gi|327310388|ref|YP_004337285.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
768-20]
gi|326946867|gb|AEA11973.1| exosome complex RNA-binding protein Rrp42 [Thermoproteus uzoniensis
768-20]
Length = 273
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+ +
Sbjct: 59 LGKTRVVAGVKVGLGQPFPDAPDEGVLIVNAEILPHASPYSEIGPPDETAIELARVVDR- 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
G +G +D L + + KV + L++D V++ DGNL+DA A AAL +T +PS
Sbjct: 118 ---GIRHSGF-VDFKKLAIDQNKV-YVLWVDLYVLNDDGNLVDAANLAALAALRSTMLPS 172
Query: 121 VHVAAEAASDEQ-PEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
A DE ++D +++ L D S P+ ++ K+ IVD EEE + +
Sbjct: 173 ------AVKDETGVKLDRNNKTALPSDLSKAPIAVSIGKIDNRLIVDPNFEEELSLDGRI 226
Query: 180 SISI 183
+++I
Sbjct: 227 TVTI 230
>gi|121698408|ref|XP_001267812.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119395954|gb|EAW06386.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 292
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 15/216 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + +E+ +P +P G AI ++ + P ++ GR G+ L A ++ L
Sbjct: 51 LGKTSLIVRISSEVTKPRDDRPFDGLFAIALELTAMGSPAWDNGRQGD-LEAYVAHVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D + DGNL+DA + A L + P
Sbjct: 110 VVRHSNA-----LDTESLCILKGVSCWSIRADIHITDYDGNLIDAACIGVMAGLQHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMS 176
V D Q V DE + + + P+ T GK I+DAT +EE
Sbjct: 165 DAVV-----KDGQVIVYGLDERVPVPLNITHKPLSVTFHTFDEGKRVILDATRKEEQASE 219
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ V I +N G +C + K G +D V + SVA
Sbjct: 220 ADVVIGVNNAGDVCFVSKFSGSPVDALVFVTKSSVA 255
>gi|290990431|ref|XP_002677840.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
gi|284091449|gb|EFC45096.1| 3' exoribonuclease domain-containing protein [Naegleria gruberi]
Length = 367
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 26/244 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPT-AEP--TFEGRGGEELSAELSSAL 57
+G+T + V + P +P++G + +D S + P T + EL E+ +
Sbjct: 93 LGNTIALGIVSCSIMEPYMDRPNEGFLTFQIDFSTVGSRPIGTKQTSQQRELCIEIGRVI 152
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
L G +S ID +L ++ G+ W L +D ++ DGN+ D A AAL +
Sbjct: 153 DRSLRGSRS-----IDTEALCIIAGRKVWSLRVDVHILQDDGNVFDCCHLAAVAALLHFK 207
Query: 118 IPSV-----HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH----YIVDAT 168
P V V D QP + +P+ T+ + ++VD
Sbjct: 208 RPEVTIEGDRVVVHTVQDRQP---------VPLSVHHIPICTSFSFFDHDSATLFVVDPC 258
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
+EE ++I++N +C + K GG+ L IL+ + + S+++ + L +
Sbjct: 259 KKEEMIAEGFMTIALNAHKELCAIQKGGGLALTKDQILECAQIGSVKSKEITETLKQFLQ 318
Query: 229 AADA 232
A ++
Sbjct: 319 AEES 322
>gi|194891452|ref|XP_001977495.1| GG18224 [Drosophila erecta]
gi|190649144|gb|EDV46422.1| GG18224 [Drosophila erecta]
Length = 415
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 9/193 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+ V ++G P+ +P++GK + V+ + A ++ S L+S L+
Sbjct: 56 MGDTKVLTRVTCDMGTPATSRPNEGKFQLNVNLAGVAFLDELQTTHDQRSLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S +DL SL V W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRS-----VDLESLCVAAEHHVWCIRVDVNVLNHDGNLYDASTIATLAALMHFRRPD 170
Query: 121 VHVAAEAAS-DEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V A + + E D FL + S V + K IVD TL EE+ S +
Sbjct: 171 VTFADDKLRIYTEKERDFIPLLFLHYPVS---VTYCIYKSSWQPIVDPTLLEENAADSVI 227
Query: 180 SISINRQGHICGM 192
+S N +C +
Sbjct: 228 VLSFNSYQELCSL 240
>gi|73669985|ref|YP_306000.1| exosome complex RNA-binding protein Rrp42 [Methanosarcina barkeri
str. Fusaro]
gi|72397147|gb|AAZ71420.1| ribosomal RNA-processing protein RRP42 [Methanosarcina barkeri str.
Fusaro]
Length = 260
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 52 LGDTQVLVGVKLQPGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRG 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W YID V++ DGN++DA A AAL T +P+
Sbjct: 112 IR--ESGA---IDIKKLCISVGESVWIAYIDVHVLNDDGNIIDASSLAAIAALMTTIVPN 166
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
A +V ++ +E PV TL K+G +VD +L+E + + ++
Sbjct: 167 EQHGIGA------DVPLAMKEM--------PVGVTLAKIGSKLMVDPSLDEGAVCETKLT 212
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ + G + GM K G V + +L+ I +A
Sbjct: 213 VVSSSDGSVAGMQKMGTVPFTEAEVLEAIDMA 244
>gi|440473323|gb|ELQ42126.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae Y34]
gi|440486517|gb|ELQ66377.1| exosome complex exonuclease RRP45 [Magnaporthe oryzae P131]
Length = 251
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T ++A AE+ P +P G I + SP A P FE E LS L+
Sbjct: 51 FGKTRIVAKASAEVTIPYTDRPFDGIFNIVTELSPMASPAFEVNRPTETEVLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL +V G+ CW + +D S DGNL+DA A+ AAL + P
Sbjct: 111 I--RRSNA---LDTESLCLVAGQKCWSIRVDVHAESHDGNLIDASCLAVVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT---KVGKHYIVDATLEEE 172
+ E + P ++ E + P T + +G ++VDA EE
Sbjct: 166 TSIEGEVVTVYTP----AEREPVPLSWLHSPFCVTFSFFGDLGDMFVVDANWLEE 216
>gi|392572304|gb|EIW65456.1| hypothetical protein TREMEDRAFT_70580 [Tremella mesenterica DSM
1558]
Length = 281
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 18/230 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T V+A V A + +P +P +G + I + SP A +E GR E+ ++ L +
Sbjct: 51 LGKTAVLAQVTATIVKPRDDRPYEGSLLINSEISPMASTAYENGRSSEDELIITRMLEKS 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +D +L ++ G W L + +S GNLLD A AAL +
Sbjct: 111 IRR---------TEAVDREALCIIAGDKVWQLRLTLHFLSDSGNLLDCASLASMAALRHF 161
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK-HYIVDATLEEESQM 175
P + V + PE + + VP+ T I+D T EE
Sbjct: 162 RKPEIEVIGDEVIIHSPE----ERAPVPLSMHHVPLCVTFAYFENLPPILDPTHLEECLC 217
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +SI++N Q IC + K GG L + ++ +I V RQ++ +D
Sbjct: 218 TGTLSITLNAQREICVLSKAGGSALAANEMMGVIRVGVDQVRQMVATVDK 267
>gi|328871066|gb|EGG19437.1| hypothetical protein DFA_00014 [Dictyostelium fasciculatum]
Length = 294
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 32/243 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKG-------------KVAIFVDCSPTAEPTFEGRGGE 47
+G+T VIA VKAE+ A+ P + K+ + V+ P F
Sbjct: 52 IGNTSVIAGVKAEV----ALTPTQSDNSISSNNNNNNNKMFVNVEMGPICSNIFSSSKPS 107
Query: 48 E----LSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
E L ++L+S + + K +GK W LYID + +GNL+D
Sbjct: 108 EKAMSLCSQLNSLVNRLEINDKELYFDD---------QGKYSWYLYIDLYCLDYNGNLMD 158
Query: 104 ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVI-TTLTKVGKH 162
A AI +AL N +P + E+++ E P++ E+ ++ G +I T + +
Sbjct: 159 ACVLAIMSALKNVKLPK-GIVVESSASEAPQLFKDTEQPMRSLNIGTYLIPQTFVLLNDY 217
Query: 163 YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDK 222
+ D +LEEE S +SI+ N + IC ++ G + ++ + S ++++
Sbjct: 218 LLTDPSLEEEKLSSGTISITFNDRFEICTLLYTGITSISEKILEQCLEKTKKRSTEIINL 277
Query: 223 LDS 225
+D+
Sbjct: 278 IDN 280
>gi|395545183|ref|XP_003774484.1| PREDICTED: exosome complex component RRP45 isoform 1 [Sarcophilus
harrisii]
Length = 439
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V DE + + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQG----DEITLYALEERDPVPLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLQDQVLRCSKIA 254
>gi|302791854|ref|XP_002977693.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
gi|300154396|gb|EFJ21031.1| hypothetical protein SELMODRAFT_176463 [Selaginella moellendorffii]
Length = 291
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 19/207 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAI-FVD---CSPTAEPTFEGRGGEELSAELSSA 56
+G+T ++A K E P+A PD+G +++ FV CSP P GR EE + ++
Sbjct: 58 IGNTTMLAGAKLETMEPAADTPDQGCLSVDFVMPPICSPRVRP---GRPAEE-AYVITEQ 113
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
LQ+ LL SG +DL L +V GK W +Y+D + +DG+LLDA A AAL++
Sbjct: 114 LQNALLS--SGV---VDLRELSIVSGKAAWMIYLDVYCLDADGSLLDAALLASVAALAHL 168
Query: 117 GIPSVHVAAEAA-SDEQPEVDISDE--EFLQ---FDTSGVPVITTLTKVGKHYIVDATLE 170
+P++ V +E + P+ S + EF Q + P T+ K I D T E
Sbjct: 169 QVPAICVRSEGKITKAPPDAQASSDGIEFTQPRRLNLGEFPFALTVAMNQKSLIADPTAE 228
Query: 171 EESQMSSAVSISINRQGHICGMIKRGG 197
EE+ + + + + +N I + K GG
Sbjct: 229 EEAILDTKMIVILNSSQKIIALHKAGG 255
>gi|126330624|ref|XP_001362799.1| PREDICTED: exosome complex component RRP45-like isoform 1
[Monodelphis domestica]
Length = 438
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V DE + + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQG----DEITLYALEERDPVPLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTIQSSGGIML 242
>gi|395545185|ref|XP_003774485.1| PREDICTED: exosome complex component RRP45 isoform 2 [Sarcophilus
harrisii]
Length = 453
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V DE + + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQG----DEITLYALEERDPVPLSIHHMPICISFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLQDQVLRCSKIA 254
>gi|302795634|ref|XP_002979580.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
gi|300152828|gb|EFJ19469.1| hypothetical protein SELMODRAFT_233365 [Selaginella moellendorffii]
Length = 291
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 19/207 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAI-FVD---CSPTAEPTFEGRGGEELSAELSSA 56
+G+T ++A K E P+A PD+G +++ FV CSP P GR EE + ++
Sbjct: 58 IGNTTMLAGAKLETMEPAADTPDQGCLSVDFVMPPICSPRVRP---GRPAEE-AYVITEQ 113
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
LQ+ LL SG +DL L +V GK W +Y+D + +DG+LLDA A AAL++
Sbjct: 114 LQNALLS--SGV---VDLRELSIVSGKAAWMIYLDVYCLDADGSLLDAALLASVAALAHL 168
Query: 117 GIPSVHVAAEAA-SDEQPEVDISDE--EFLQ---FDTSGVPVITTLTKVGKHYIVDATLE 170
+P++ V +E + P+ S + EF Q + P T+ K I D T E
Sbjct: 169 QVPAICVRSEGKITKAPPDAQASSDGIEFTQPRRLNLGEFPFALTVAMNQKSLIADPTAE 228
Query: 171 EESQMSSAVSISINRQGHICGMIKRGG 197
EE+ + + + + +N I + K GG
Sbjct: 229 EEAILDTKMIVILNSSQKIIALHKAGG 255
>gi|324513828|gb|ADY45664.1| Exosome complex exonuclease RRP45 [Ascaris suum]
Length = 419
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 21/218 (9%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
GST V A V + P + + + G V + VD SP PT E GR G + EL+ L+
Sbjct: 51 GSTKVSAQVTCNIVEPKSARGNMGAVEVHVDMSPMGSPTHEDGRLGPK-GIELTRVLE-- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL GA +DL +L + K W + +D ++ +DG L+D A AL++ P
Sbjct: 108 LLCRDCGA---VDLEALCLTAYKKVWQIRVDVHILQADGALIDCASVAAITALAHFRRPD 164
Query: 121 VHVAAEA----ASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEESQ 174
V V ++ SD++ + ++ +P+ + + G+ ++D T E
Sbjct: 165 VTVLVDSILVHGSDKKAPIPLT--------VYHMPICVSFGIAPDGEQVVIDPTEREAMC 216
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ A ++ N++ +C + + G + L+ +I+ + +A
Sbjct: 217 LKGAFVVAANKRHEVCALHQTGNLLLNEQLIVRCVDMA 254
>gi|327400939|ref|YP_004341778.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
gi|327316447|gb|AEA47063.1| exosome complex exonuclease 2 [Archaeoglobus veneficus SNP6]
Length = 259
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 19/223 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P PDKG + + P A PTFE +E S EL+ +
Sbjct: 53 LGNTQVVVGVKMQPGEPFPDAPDKGIIITNAELVPLASPTFEPGPPDENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DL+ L + EG+ W ++ID + DGNL+DA A AAL T +P+
Sbjct: 113 IRESEA-----VDLTKLCIEEGEKVWLIFIDIHALDDDGNLMDASSLAAIAALLTTTVPA 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
D+ ++ +P+ T V +VD + +E S ++
Sbjct: 168 ER------------FDVGED--FPLPVRDLPISVTSLIVNNRILVDPSRDEVSVGEYFMT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
I+ ++ +I M K G L ++I ++ +R++ + L
Sbjct: 214 ITTDQADNIVAMQKSGSYLLSEEKFYELIDISIEKAREIRELL 256
>gi|308486185|ref|XP_003105290.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
gi|308256798|gb|EFP00751.1| CRE-EXOS-7 protein [Caenorhabditis remanei]
Length = 314
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 29/250 (11%)
Query: 3 STDVIASVKAELGR--PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+TDV+A +K EL P A + K ++ VD S A F G+GG++ ELS+A Q
Sbjct: 55 TTDVLAGIKLELEAYDPIAEKQPKQPMSFHVDFSANASSQFAGKGGDQYGEELSAAFQ-- 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +LS + G W +++D V+ G++ DA AI ALS+ IP
Sbjct: 113 -VAYSRSLDIIPNLSKTQLAAGYR-WKIHVDISVLQWAGSVPDACSLAIIGALSDLEIPE 170
Query: 121 VHVAAEAASD-----EQPEV--DISDEE----FLQFDTSGVPVITTLTKVGKHYIVDATL 169
V V + ++P + D+ DEE + + P++ T++K+G +VD +
Sbjct: 171 VDVTPDDGGKVSIVLKRPRIGGDVRDEEVPVAMWKLIVTSCPMLLTVSKIGTANLVDCSP 230
Query: 170 EEESQMSSAVSISINR------------QGHICGMIKRGGVGLDPSVILDMISVANFVSR 217
EEE + S + I + + + I + + GG L+ I DM +A ++
Sbjct: 231 EEECCIRSQLLIGVAKNLESTPESDDANEYDITCVKQHGGGLLEMESIDDMTKLATRTAK 290
Query: 218 QLMDKLDSEI 227
L + + + +
Sbjct: 291 GLYEAIGNRL 300
>gi|296812847|ref|XP_002846761.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
gi|238842017|gb|EEQ31679.1| exosome complex exonuclease RRP45 [Arthroderma otae CBS 113480]
Length = 292
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 36/248 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ + AEL P + G + V+ + A P +E EL LS L
Sbjct: 51 LGKTAVLVRISAELTTPRPERDCDGIFTVVVELNDMALPGYETGRPSELEVSLSRTLDKI 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL + +G++CW++ D ++ DG L+DA AI A L + +
Sbjct: 111 V--RRSNA---LDTESLCIAKGRICWNIRADIHILDCDGGLIDASCLAIMAGLLHFRL-- 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDT-SGVPVITTLTKV-----------GKHYIVDAT 168
PE + D E F VPV LTK+ G+ ++DAT
Sbjct: 164 ------------PESTVRDGEVTVFSMEEKVPVSLNLTKIPLAVTFNLYDEGRIVLLDAT 211
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
EE ++ I++++ G I K G DP ++ +VA R+L +++
Sbjct: 212 AGEEVVSEGSLVIALDKTGEIALYSKPDGAPADPVNMVTCSTVALAKVREL-----NKLI 266
Query: 229 AADADEDE 236
+A +ED+
Sbjct: 267 SAKLEEDK 274
>gi|298705981|emb|CBJ29102.1| similar to exosome component 6 [Ectocarpus siliculosus]
Length = 274
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 12/197 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+A + ++G PS P G + + V +P + F E + LS+ +++
Sbjct: 56 LGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAHVLSTFVKNS 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ +SGA + L+ L + +G W L +D + +S DGNL DA A AL +P
Sbjct: 116 IV--ESGA---LVLTDLAIDDGAFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPG 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ E+ ++++ Q VPV T I D +L EE +++ V+
Sbjct: 171 TRRIDD-------EIFVTEDTPTQLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVT 223
Query: 181 ISINRQGHICGMIKRGG 197
+ +G +CG+ K GG
Sbjct: 224 VVSTSEGKVCGVHKPGG 240
>gi|324510352|gb|ADY44328.1| Exosome complex exonuclease RRP45 [Ascaris suum]
Length = 431
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 21/218 (9%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
GST V A V + P + + + G V + VD SP PT E GR G + EL+ L+
Sbjct: 51 GSTKVSAQVTCNIVEPKSARGNMGAVEVHVDMSPMGSPTHEDGRLGPK-GIELTRVLE-- 107
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL GA +DL +L + K W + +D ++ +DG L+D A AL++ P
Sbjct: 108 LLCRDCGA---VDLEALCLTAYKKVWQIRVDVHILQADGALIDCASVAAITALAHFRRPD 164
Query: 121 VHVAAEA----ASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEESQ 174
V V ++ SD++ + ++ +P+ + + G+ ++D T E
Sbjct: 165 VTVLVDSILVHGSDKKAPIPLT--------VYHMPICVSFGIAPDGEQVVIDPTEREAMC 216
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ A ++ N++ +C + + G + L+ +I+ + +A
Sbjct: 217 LKGAFVVAANKRHEVCALHQTGNLLLNEQLIVRCVDMA 254
>gi|409075918|gb|EKM76293.1| hypothetical protein AGABI1DRAFT_122693 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 283
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 19/234 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T VIA V A++ +P+ +P +G ++I + SP A +E GR E ++ L
Sbjct: 50 LGKTMVIAQVDAKMVKPTPERPFEGSISIHSEISPMASSEYEAGRAASEEEVMINRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A ID SL ++ G W L I +S GN+LD A AL + P
Sbjct: 110 VL--RRSDA---IDKESLCILAGHRVWHLRITFHFLSDAGNMLDCACLAGIVALRHFRRP 164
Query: 120 SVHVAAEAASDEQP------EVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
V V + P + I F F + P +TT ++D + E+
Sbjct: 165 EVEVIGDEVIVHPPTERAPVPLAIHHTPFC-FTFAFFPDVTTSP------VLDPSQLEQR 217
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ +SI++N Q +C + K GGV L I+ ++ + +++L + +++ +
Sbjct: 218 LSAGLLSIALNAQKELCVLQKLGGVPLPHEEIIRLVDTSVQKAKELHEFVETRL 271
>gi|403346784|gb|EJY72799.1| Polymyositis/scleroderma autoantigen 1 [Oxytricha trifallax]
Length = 463
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 17/217 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSP---TAEPTFEGRGGEELSAELSSAL 57
+G T ++ +L P +P++G + S +AE T E+ +++ +
Sbjct: 49 IGKTHILTQASLKLVSPQPGKPNEGFFRFNTEFSSLLHSAEYTSSINTLSEMRVDITRFI 108
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
L + D SL +V+G++ W L +D +++ DGN++DA A L NT
Sbjct: 109 DKVL-----KSSRATDRESLCIVQGRLVWSLSVDLFLLNEDGNVMDACFIASVLCLMNTR 163
Query: 118 IPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG--KHYIVDATLEEESQM 175
+P V ++ + +V I+ E+ + +P+ TT + I+ A +EE
Sbjct: 164 LPEVTISKD-------QVKINYEKVKYLNVHHIPICTTFYFIEGIDQPILYANGKEEKLA 216
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
S +S+ +N +CGM G + +DP I+ +A
Sbjct: 217 KSRLSMCMNIFEDLCGMSTLGCLEIDPITIIQCSKIA 253
>gi|448085760|ref|XP_004195940.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
gi|359377362|emb|CCE85745.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
Length = 305
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 107/252 (42%), Gaps = 35/252 (13%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
G T + V AE+ +P +P +G I + SP A P FE GR ++ L
Sbjct: 53 GKTKLTVRVSAEVVKPFEDRPFEGIFTINTEISPMASPQFEQGRVSDD------EILMSR 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP- 119
L+ +DL +L +V G W + D V+ DG ++DA + AL + P
Sbjct: 107 LIEKAIRRSNALDLEALCMVAGAKVWYIRADVNVLEFDGGIIDAASFGVMVALQHFRKPD 166
Query: 120 -SVH---VAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH------------- 162
S+H V + + +P + VP+ T +
Sbjct: 167 VSIHGSDVIIHSLQEREP---------VPLSVLHVPICVTFSFFNPSDSEENIKGELNEE 217
Query: 163 -YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
I+DAT +EES ++ I+IN+ I + K GG+ +D V++D+ A ++ L +
Sbjct: 218 ISIIDATEKEESLRDGSLVITINKNREIVQLSKNGGLPIDVFVLMDLSKKAYTIAESLSE 277
Query: 222 KLDSEIAAADAD 233
K+ + + +++
Sbjct: 278 KIKAFLQKEESE 289
>gi|323509319|dbj|BAJ77552.1| cgd7_2380 [Cryptosporidium parvum]
Length = 408
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 22/240 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTA-EPTFEG--RGGEELSAELSSAL 57
+G T V++ VK+EL PS + +G ++ VD P + PT L E+++ +
Sbjct: 41 IGRTHVLSVVKSELVAPSQERSSEGFISFTVDIGPLSINPTSHAFRHNRTTLGTEIANYI 100
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ L ++GA ID L ++ G W + + V+ DGNL DA A + L +
Sbjct: 101 ERIL--KETGA---IDTEILCILSGVCVWSVKCEIHVLFDDGNLFDACLMATLSGLKHYR 155
Query: 118 IPSVHVAAEAASD----------EQPEVDISDEEFLQFDTSGVPVITTLT----KVGKHY 163
+ V + ++ E I E + F+ P+ ++ K G Y
Sbjct: 156 YNEIDVDSFLKKSKCEGFGERDYQRLENTIRKLEMIPFNVHHFPLSISIGYINGKEGLSY 215
Query: 164 IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
IVD +EES + + ISIN + +CG+ K GG L + I I +A S +L +
Sbjct: 216 IVDPNSDEESISDTIIHISINDKQEVCGISKFGGAKLSLNQINFAIQIATIHSEKLHQEF 275
>gi|66362890|ref|XP_628411.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
[Cryptosporidium parvum Iowa II]
gi|46229803|gb|EAK90621.1| RRP45-like archaeo-eukaryotic exosomal rnase, PH domain
[Cryptosporidium parvum Iowa II]
Length = 432
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 22/240 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTA-EPTFEG--RGGEELSAELSSAL 57
+G T V++ VK+EL PS + +G ++ VD P + PT L E+++ +
Sbjct: 65 IGRTHVLSVVKSELVAPSQERSSEGFISFTVDIGPLSINPTSHAFRHNRTTLGTEIANYI 124
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ L ++GA ID L ++ G W + + V+ DGNL DA A + L +
Sbjct: 125 ERIL--KETGA---IDTEILCILSGVCVWSVKCEIHVLFDDGNLFDACLMATLSGLKHYR 179
Query: 118 IPSVHVAAEAASD----------EQPEVDISDEEFLQFDTSGVPVITTLT----KVGKHY 163
+ V + ++ E I E + F+ P+ ++ K G Y
Sbjct: 180 YNEIDVDSFLKKSKCEGFGERDYQRLENTIRKLEMIPFNVHHFPLSISIGYINGKEGLSY 239
Query: 164 IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
IVD +EES + + ISIN + +CG+ K GG L + I I +A S +L +
Sbjct: 240 IVDPNSDEESISDTIIHISINDKQEVCGISKFGGAKLSLNQINFAIQIATIHSEKLHQEF 299
>gi|403171122|ref|XP_003330351.2| hypothetical protein PGTG_11688 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169041|gb|EFP85932.2| hypothetical protein PGTG_11688 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 281
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ ++K E +P + +P++G + V+ P P ++ + + L++ L+
Sbjct: 58 IGNTSVLCAIKFETAQPESAKPNQGFLVPNVELGPMCCPKYKPGPPPDQAQILATKLKDI 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ + + L SLV+ GK+ W +YID + +S+DGNL DA +A +AL + IP
Sbjct: 118 LI-----SSGFVPLDSLVIAPGKLVWVVYIDIVCLSNDGNLFDASLSATTSALKSARIPV 172
Query: 121 VHVAAEAAS 129
V E S
Sbjct: 173 VSFDHETQS 181
>gi|159464609|ref|XP_001690534.1| hypothetical protein CHLREDRAFT_114378 [Chlamydomonas reinhardtii]
gi|158280034|gb|EDP05793.1| predicted protein [Chlamydomonas reinhardtii]
Length = 302
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 29/243 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSA---ELSSA 56
+G T V+A V+ E+ RP P G + + V+ +P + + GR + +SA +LSSA
Sbjct: 70 VGRTTVLAGVRLEIMRPDETAPAAGALVLSVEMAPFSSADYRPGRAPDHVSAVVEKLSSA 129
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L G+GA +L + EGK W +D V+ +DG +LDA A AAL +T
Sbjct: 130 LL--------GSGA-----ALCIAEGKAAWRALLDVYVLDADGCVLDAALLAAVAALRDT 176
Query: 117 GIPSVHVAAEA-----------ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV 165
IP+V E + E + + +P+ T GKH +V
Sbjct: 177 RIPAVRNTREGHYYAARGAGGRKGGKAGEAGLVEGSPTAVGLGRLPLALTCCLYGKHVLV 236
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGL-DPSVILDMISVANFVSRQLMDKLD 224
D T +EE V++ ++ G + G+ K GG L D + ++ A R+L LD
Sbjct: 237 DPTADEERLAGCGVTVVVDGAGQLQGLYKAGGRVLADTATLVRCTEAARLRHRELSALLD 296
Query: 225 SEI 227
+ +
Sbjct: 297 ASL 299
>gi|365984549|ref|XP_003669107.1| hypothetical protein NDAI_0C02040 [Naumovozyma dairenensis CBS 421]
gi|343767875|emb|CCD23864.1| hypothetical protein NDAI_0C02040 [Naumovozyma dairenensis CBS 421]
Length = 306
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 24/238 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V + ++ +P +P +G I + SP A P FE G E ++ ++
Sbjct: 51 MGKTKVHCRISCQITQPYEDRPFEGLFLISTENSPMAGPQFENGNNTNEDEVLIARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D ++ DG +DA A+ A L + P
Sbjct: 111 AV--RRSGA---LDIEGLCIVAGSKCWAVRADVHFLNCDGGFIDASCIAVMAGLLHFRKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V E P + + E + VP+ T + I+
Sbjct: 166 DITVHGEQVI-MHP---VDEREPVPLGILHVPICVTFSFFNPMDTEENIKGDTNAEITII 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DATL+EE +++++N+ + + K GG+ +D +++ A ++ ++ DK+
Sbjct: 222 DATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALSLMECCRKAYAITEEITDKI 279
>gi|403170373|ref|XP_003329715.2| exosome complex component RRP45 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168691|gb|EFP85296.2| exosome complex component RRP45 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 288
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 110/240 (45%), Gaps = 14/240 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V A V A + +P A +P +G I + +P A ++ E ++S L
Sbjct: 51 LGNTRVAAHVSASITKPWADRPFEGLFQISSEINPMANFIYDTGRSSENEIQISRMLDKS 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +SG ID +L ++ G++ W + +D ++ +GNLLD A AAL P
Sbjct: 111 L--SRSGV---IDKEALCILAGQMVWSIRLDLHFLNDEGNLLDCASIAAIAALQTFQRPD 165
Query: 121 VHVAAEAASDE--QPEVDISDEEFLQFDTSGVPVITTLTKVGKH---YIVDATLEEESQM 175
V + E + Q V + L + + + ++ H ++D EE
Sbjct: 166 VTLVGEEITIHSIQERVPVP----LTLHHTPISLTYGFFELDSHKSSVVLDPNYLEEQLS 221
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADED 235
+ +++++N Q IC + K GGV L I++++ + + +QL + S I+ ++ D
Sbjct: 222 TGTITLALNPQKEICVVNKSGGVPLSIEEIMNVVKLGSQKVKQLDQLIKSLISNRNSPVD 281
>gi|336372937|gb|EGO01276.1| hypothetical protein SERLA73DRAFT_179422 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385769|gb|EGO26916.1| hypothetical protein SERLADRAFT_464533 [Serpula lacrymans var.
lacrymans S7.9]
Length = 288
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 89/207 (42%), Gaps = 12/207 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+ VKAE+ P PD+G + +D F+ E + LS L
Sbjct: 71 MGDTTVVCGVKAEIAEPELDHPDEGYLVPNLDLPAMCSSKFKPGPPTEEAQVLSDRLNQA 130
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG I LSSL + G+ W LY+D I+ GN DA A+ AAL NT IP
Sbjct: 131 LV--MSGV---ISLSSLCIHSGRSVWTLYVDATCINYAGNAFDATLLAMVAALKNTRIPQ 185
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
E+ + +F TS I +++ + D T EE + + V
Sbjct: 186 ASFDEESGRTVCSRKNRVPLTLSRFPTSASFGIFDASQI----LADPTAFEEPLLDATVC 241
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILD 207
+ ++ + +I GVGL + +D
Sbjct: 242 VVVDEEPE---LISVNGVGLGITTTVD 265
>gi|444315341|ref|XP_004178328.1| hypothetical protein TBLA_0A10310 [Tetrapisispora blattae CBS 6284]
gi|387511367|emb|CCH58809.1| hypothetical protein TBLA_0A10310 [Tetrapisispora blattae CBS 6284]
Length = 305
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 32/242 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
M T V + L +P +P +G I + SP A FE G + S L+
Sbjct: 51 MDKTKVHCRISCSLTQPYEDRPFEGLFVISTEISPIAGAQFENGNNTGDYEVLCSRILEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ AAL + P
Sbjct: 111 SI--RRSGA---LDVEGLCIVAGSKCWTIRADVHFLDCDGGFIDASCIAVMAALLHFKKP 165
Query: 120 SVHVAAEAA----SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH------------- 162
+ V E DE+P V + +P+ T +
Sbjct: 166 DISVHGEQVIILPVDERPPVPLG--------ILHIPICVTFSFFNPQDSEQNIKGDSNDE 217
Query: 163 -YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
I+DATL+EE +++++N+ I + K GG+ +D ++D A ++ ++ D
Sbjct: 218 IAIIDATLKEELLRDGELTVTLNKNREIVQVNKAGGLPMDALQLMDCCHKAYTITTEITD 277
Query: 222 KL 223
++
Sbjct: 278 QI 279
>gi|195480861|ref|XP_002101422.1| GE15642 [Drosophila yakuba]
gi|194188946|gb|EDX02530.1| GE15642 [Drosophila yakuba]
Length = 415
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 21/236 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+ V ++G P+ +P++GK+ + V+ A ++ S L+S L+
Sbjct: 56 MGDTKVLTHVTCDMGAPATSRPNEGKLQLNVNLGGVAFLDEVQTTHDQRSLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+S +DL SL V + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRS-----VDLESLCVAAEQHVWCIRVDVNVLNHDGNLYDASTIATLAALMHFRRPD 170
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V DE + EF L F V V + K IVD TL EE+ S
Sbjct: 171 VTF----TDDELRIYTEKEREFIPLLFLHYPVSVTYCIYKSSGQPIVDPTLLEENAADSV 226
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMI--------SVANFVSRQLMDKLDSE 226
+ +S N +C + G + I+ S+ +FV + L+ LD E
Sbjct: 227 IVLSFNSYQELCSLNAGGTAPTNVRTIMQCARNAATRCKSLVDFVRKALL--LDEE 280
>gi|336369000|gb|EGN97342.1| hypothetical protein SERLA73DRAFT_169702 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381784|gb|EGO22935.1| hypothetical protein SERLADRAFT_450637 [Serpula lacrymans var.
lacrymans S7.9]
Length = 282
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 20/219 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
MG T VIA V ++ +P +P +G + I + SP A +E GR EE ++ L
Sbjct: 50 MGDTRVIAQVDGKMVKPLPERPFEGMITIHSEISPMASSEYEPGRPSEEEVIITRMLDKV 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +S A +D SL V+ G+ W L + ++ GN+LD A AL +
Sbjct: 110 IR------RSDA---VDKESLCVLAGQRVWHLRLTIHCLADAGNMLDCACLAGIVALKHF 160
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI---VDATLEEES 173
P V V + + P ++ + P T I VD TL E+
Sbjct: 161 RRPEVEVIGDEVTIHAP----TERAPIPLAIHHTPYCFTFAFFPDPTIRPVVDPTLLEQR 216
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ ++I++N Q IC + K GG L P+ I +++ +A
Sbjct: 217 LSAGLLTIALNAQREICVLQKAGGTPLAPNEISNVVRIA 255
>gi|440792691|gb|ELR13899.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 524
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 14/233 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE--GRGGEELSAELSSALQ 58
+G T V V+ E+ P A +P +G + SP A +FE R EE + E+ ++
Sbjct: 57 LGQTRVYVVVRCEVVEPYADRPTEGFFIFNTEFSPMASASFEVGARVSEE-AVEVGRLIE 115
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
L ++ ID +L + G+ W + ID V+ GNL+DA A +AL +
Sbjct: 116 RSLRDSRA-----IDTEALCIRAGEKVWAVQIDVHVLDDGGNLIDAASIATVSALLHFRR 170
Query: 119 PSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK--HYIVDATLEEESQMS 176
P V + +A + ++D E + +P+ T G +VD +EE ++
Sbjct: 171 PDVSITGDAITVH----SVADREPVPLSIHHLPLCVTFAVFGDGDQVVVDPWFKEEQSLN 226
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
V++ N+ +CG+ K GG GL + ++ +A + ++ + S I A
Sbjct: 227 GRVTLIHNQHRELCGVHKSGGPGLPLNTLVKCSKIAAVKVQDVIQAIQSAITA 279
>gi|430811931|emb|CCJ30637.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 250
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
+D SL ++ GK CW + D + DGNL+DA A+ AAL + P V V E
Sbjct: 84 LDKESLCIIYGKQCWSIRADVHYLDHDGNLIDATSIAVVAALYHFKKPVVTVEGEKVIVH 143
Query: 132 QPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQMSSAVSISINRQGHI 189
E + L + +P+ T + ++ I +D TL+EE ++ I++N+ I
Sbjct: 144 SIEERVPVPLIL----THIPISITFSFFNENQISLMDTTLQEEKLREGSMVITLNKNKEI 199
Query: 190 CGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
C + K GGV L S IL + +A+ + ++ + L+ ++
Sbjct: 200 CQISKVGGVILQTSHILKCLQLASKKALEITNYLNEKL 237
>gi|156841697|ref|XP_001644220.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
70294]
gi|156114858|gb|EDO16362.1| hypothetical protein Kpol_1051p10 [Vanderwaltozyma polyspora DSM
70294]
Length = 305
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 24/251 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V V + +P +P +G I + SP A P FE G E + ++
Sbjct: 51 MGNTKVQCRVSCSIAQPYEDRPFEGLFFISTESSPMAGPQFENGNNTGEDEVLCARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D ++ DG +DA A+ AAL + P
Sbjct: 111 AV--RRSGA---LDIEGLCIVAGSKCWAIRADVHFLNCDGGFIDASCIAVMAALMHFRKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V E + P + + E + +P+ T + I+
Sbjct: 166 DISVFGEQVT-VHP---VDEREPVPLGILHIPICVTFSFFNPEDTEENIKGESNSEITII 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
DA+L+EE +++++N+ + + K GG+ +D ++ A ++ Q+ D +
Sbjct: 222 DASLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALSLMQCCHKAFGITEQITDLIIE 281
Query: 226 EIAAADADEDE 236
+I + D+
Sbjct: 282 KIKEESKERDK 292
>gi|170086802|ref|XP_001874624.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649824|gb|EDR14065.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 345
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 109/280 (38%), Gaps = 50/280 (17%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T+V+A+ K E+ D G+V V CSP A P E+L ++++ + L
Sbjct: 64 GGTEVLAAAKVEVESVEEGGVDAGRVVCTVSCSPAAYPQLATAALEDLQYDMTTIVHQTL 123
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
+ + +L ++ GK W L +D +V++ GN+ DAL A +AAL +T IP
Sbjct: 124 ------SHPSLHPKNLRILPGKKSWLLNLDLIVLADSGNIYDALFMAARAALWDTKIPRT 177
Query: 122 HVAAEAASDEQP----------------EVDISDEEFLQFDTSGV--------------- 150
A P ++DI +E FDT +
Sbjct: 178 RAVEYKARKGVPGSAGLSAAVGKVGGSGDMDIDEEAPSGFDTRQIQHATDFELPDYWDEG 237
Query: 151 ---------PVITTLTKVGKHYIVDATLEEESQMSSAV----SISINRQGHICGMIKRGG 197
PV TL V + +DA L EE+ + S + + + GM G
Sbjct: 238 EVLDGRDIWPVCITLNLVPPVHFLDAILREEAAAPLKILLIYSFPPSEKPRVQGMRMLGP 297
Query: 198 VGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
L I D+++ +R + L +++ D ++
Sbjct: 298 GELTLEQIKDLVNRGEHYARDVFTALHTKLKDEDVRRNQK 337
>gi|428672169|gb|EKX73083.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
equi]
Length = 305
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 24/239 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T V +SV AE+ P++ +P++G + + P +E EL +S C
Sbjct: 61 FGNTTVFSSVCAEVVEPNSERPNEGFLFFNAELMPLTSGLYEPGKASELEQNIS-----C 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++L SL + GK W + + V+ DGNL D + A+L + I
Sbjct: 116 FIESVFKESGSLNLESLCITSGKHVWAIRVYIHVLQDDGNLFDVCSFSALASLLHYRIQE 175
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG--------KHYIVDATLEEE 172
V V + V IS+ + + G P+ + + ++VD T+ EE
Sbjct: 176 VKVVDDT-------VKISEINWHK----GTPLNIYNIPIPINILILTEERFLVDPTIFEE 224
Query: 173 SQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
S+ + + N+ G + + K GG+ + +I I + ++QL L E+A+ +
Sbjct: 225 QINSTQIFLVFNQFGEVIWVQKPGGIPVMLDIIKTAIEIGERKTKQLYSLLRKELASNE 283
>gi|390595104|gb|EIN04511.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 290
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 116/245 (47%), Gaps = 17/245 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A +++ L RP +P +G ++I + SP A +E GR EE ++ L
Sbjct: 50 LGKTKVMAHIESRLVRPPPERPYEGIISIHSEVSPMASSEYEAGRPSEE-EVTITRMLDK 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL ++ G+V W L + ++ GN+LD A AL + P
Sbjct: 109 VIRRSDT-----VDKESLCILAGQVVWHLRLTLHFLADAGNVLDCACLASIVALRHFRRP 163
Query: 120 SVHVAAEAASDEQPE------VDISDEEF-LQFDTSGVPVITTLTKVGKHYIVDATLEEE 172
V V E QP+ + + F F P +T+ ++ ++D +L E+
Sbjct: 164 EVEVVGEDVVLHQPDERAPVPLAMHHTPFCFTFAFFHPPSSSTVDEIIT--VLDPSLLEQ 221
Query: 173 SQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA 232
+ +S+++N Q +C + K GGV L IL ++++A +LM++ + A+D
Sbjct: 222 TLCGGTMSVALNAQRELCVVQKAGGVPLAQHEILHVVNLA-VQQAKLMERFVEDTLASDW 280
Query: 233 DEDES 237
++ +
Sbjct: 281 EKRKK 285
>gi|145476653|ref|XP_001424349.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391413|emb|CAK56951.1| unnamed protein product [Paramecium tetraurelia]
Length = 299
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 108/229 (47%), Gaps = 16/229 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V A+ A + P+ ++P +G + +D + + +L E+ ++
Sbjct: 43 LGETRVFATTSASITTPNPIRPSEGFLKFHLDLQVLRDTGY-MHNPIKLGMEIEKYIEKV 101
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ G K+ +D SL ++ GK W + ++ +I++DGNLLDA+ +L + P
Sbjct: 102 IKGSKA-----LDTESLCILSGKNVWSIDVNVALINNDGNLLDAMYLCCIFSLQHFRRPQ 156
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIV--DATLEEESQMS 176
V V+ + E ++ + +P+ T + ++ + I+ D LEEE+ +
Sbjct: 157 VSVSLQGVKVE------VEKRLVPLSIHHIPLSLTYAILELNEQTILLQDPCLEEEAVQN 210
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
++ S+N IC + K GG ++ S++ + +V S+ +++ S
Sbjct: 211 GRITYSVNIYNDICHVHKPGGSPINISILQQLTTVTLMKSKPYTEEIRS 259
>gi|384499441|gb|EIE89932.1| hypothetical protein RO3G_14643 [Rhizopus delemar RA 99-880]
Length = 204
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V A+V AE+ RP A +P +G + + SP A PTFE E +S ++
Sbjct: 51 LGKTKVAANVTAEVVRPYADRPTEGILIFNTEISPMAAPTFESGSRSEEEVLISRVVEKA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ ID L +V G+ W + +D + + DGNL+D A AL + P
Sbjct: 111 LRRSRA-----IDTEGLCIVSGEKVWQIRVDLMFLDHDGNLVDCACIAAITALLHFRRPD 165
Query: 121 VHVAAE 126
V V+ E
Sbjct: 166 VTVSGE 171
>gi|367014585|ref|XP_003681792.1| hypothetical protein TDEL_0E03380 [Torulaspora delbrueckii]
gi|359749453|emb|CCE92581.1| hypothetical protein TDEL_0E03380 [Torulaspora delbrueckii]
Length = 305
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 110/251 (43%), Gaps = 24/251 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A P FE G E + ++
Sbjct: 51 MGNTKVQCRISCQIAQPYEDRPFEGLFLISTESSPMAGPQFENGNNTGEDEVLCARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ AL + P
Sbjct: 111 AV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCVAVMTALLHFKKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V + + P + + E + +P+ T + I+
Sbjct: 166 DISVLGDRVT-VHP---VDEREPVSLGILHIPICVTFSFFNPQDTEENIKGDSNSEIAII 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
DATL+EE +++++N+ + + K GG+ +D +++ A ++ +L +++
Sbjct: 222 DATLKEELLRDGTLTVTLNKNREVVQVSKAGGLPMDALSLMENCHKAYTITERLTEQILD 281
Query: 226 EIAAADADEDE 236
I DA+ ++
Sbjct: 282 VIKKDDAERNK 292
>gi|167521539|ref|XP_001745108.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776722|gb|EDQ90341.1| predicted protein [Monosiga brevicollis MX1]
Length = 313
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 39/237 (16%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIF-------------------VDCSPTAEPTFEGR 44
TDV+ VKAE G D+G++ + V + +A GR
Sbjct: 58 TDVLVGVKAERGVALGQNEDEGQIEVLSRMFKKTQHALGNVVEQFAVQFASSATAMLSGR 117
Query: 45 GGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGN-LLD 103
E+ ++ ALQ + GA ID +L ++ G+ + L +D ++++++G + D
Sbjct: 118 EREDYGRAIALALQE--MADVRGA---IDRQALCIIAGREAFTLKVDVMILAANGGAIYD 172
Query: 104 ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFL-----QFDTSGVPVITTLTK 158
A+ AAL++ IPSV + +A + D+ D EF Q D S +P++TT+
Sbjct: 173 TAAVAVYAALASCDIPSVTLVKDA------DGDVVDWEFADTPDHQLDVSRLPLLTTIAS 226
Query: 159 VGKHYIVDATLEEESQMSSAVSISINRQGHICG--MIKRGGVGLDPSVILDMISVAN 213
+ ++DAT E + +A+ + I+ QG +C ++ R G G+DP ++ +M +A
Sbjct: 227 INDFAVLDATTAEMACADAAMILGIDAQGELCTCRLVGRTG-GVDPELLTEMTLMAQ 282
>gi|50305471|ref|XP_452695.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641828|emb|CAH01546.1| KLLA0C11099p [Kluyveromyces lactis]
Length = 305
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 32/242 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG--RGGEE---LSAELSS 55
MG+T V + E+ +P +P +G I + +P A FE GEE +S +
Sbjct: 51 MGNTKVHCRISCEIAQPYEDRPFEGLFHISTETTPMAGAQFENGNNTGEEEVLISRMIEK 110
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
A++ +SGA +D+ L ++ G CW L D + DG L+DA A+ A L +
Sbjct: 111 AVR------RSGA---LDVEGLCIIAGSKCWSLRADVHFLDCDGGLIDASCIAVMAGLLH 161
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG--------------K 161
P V V E + P I + E + VP+ T + +
Sbjct: 162 FKKPDVTVLGERVT-VHP---IDEREPVSLGVLHVPICVTFSFFNPDDTEENIKGEDNAE 217
Query: 162 HYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
I+DA+L+EE +++++N+ + + K GG+ ++ ++D A + ++ D
Sbjct: 218 ISIIDASLKEELLRDGVLTVTLNKNREVVQISKAGGLPMEALSLIDCCHKAYGIVEKITD 277
Query: 222 KL 223
++
Sbjct: 278 QI 279
>gi|58259313|ref|XP_567069.1| Opa-interacting protein OIP2 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134107613|ref|XP_777691.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260385|gb|EAL23044.1| hypothetical protein CNBA8110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223206|gb|AAW41250.1| Opa-interacting protein OIP2, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 297
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T ++ VKAE+G P A P +G V +D + P F+ G G+E + S+ L
Sbjct: 94 MGDTTMVCGVKAEVGEPDAEAPGEGFVVPNIDLPALSSPKFKPGPPGDE-AQTYSNWLYE 152
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ K+ I LSSL++ GK W LYID + I+ DGN DA A+ AAL NT +P
Sbjct: 153 LLVSSKT-----IPLSSLLIAPGKAAWVLYIDVVCINYDGNAFDAAVLAVMAALRNTRLP 207
>gi|336381696|gb|EGO22847.1| hypothetical protein SERLADRAFT_471294 [Serpula lacrymans var.
lacrymans S7.9]
Length = 334
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 41/271 (15%)
Query: 2 GSTDVIASVKAELGRPSAMQ-PDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T+++A+VK E+ + + D G+V V CSP A P ++L +L+S L
Sbjct: 62 GGTEILAAVKLEVETVADGEGVDGGRVVGTVSCSPAAYPHLPSGALDDLQHDLTSVLHDT 121
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP- 119
+ + + +L ++ GK W L +D +V+S DGN+ DAL A +AAL +T +P
Sbjct: 122 V------SHPSLRPKNLGIIPGKKSWLLNLDVIVLSDDGNVCDALFMAARAALWDTKVPR 175
Query: 120 --SVHVAAEAASDE---QPEVDISDEEFLQFDTSGV------------------------ 150
SV A+ A + ++++ +E FDT
Sbjct: 176 TRSVEYQAKKAGNNAEGNRDIEMDEEGKSGFDTRITKKVTDFELPDYWDEGEILDGRNIW 235
Query: 151 PVITTLTKVGKHYIVDATLEEES----QMSSAVSISINRQGHICGMIKRGGVGLDPSVIL 206
P+ TL + + +DA L+EES ++ S+ + + + G G+D +I
Sbjct: 236 PICVTLNLLPPVFFLDAALQEESSIPLRLHLMFSLPPSEKPRLQTFRLLGPSGVDVPLIK 295
Query: 207 DMISVANFVSRQLMDKLDSEIAAADADEDES 237
+I +R + LD+++ D ++
Sbjct: 296 SLIKEGEVHARSIWTALDAKLKDEDIRRNQK 326
>gi|326428882|gb|EGD74452.1| hypothetical protein PTSG_05816 [Salpingoeca sp. ATCC 50818]
Length = 280
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 18/231 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAE--LSSALQ 58
+G+T I V + RP +P KG V V SP A P ++ GG +A L+ L+
Sbjct: 57 IGNTQAICRVSCSIVRPHEDRPTKGFVRYGVTLSPMASPDYDA-GGRPSAASIYLTRLLE 115
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
H ++ +D SL +V G+ W + ++ V + DGN+ DA A A L +
Sbjct: 116 HIFREARA-----LDDESLCIVAGEKVWAVSVNVTVTNDDGNMEDACALAALAGLMHFRR 170
Query: 119 PSVHVAAE----AASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQ 174
P V +A + DE V L + + V T L G +VD T E
Sbjct: 171 PYVSIAGQDVVVHPFDEHEPVS------LAINHRPLNVTTALFDNGDLALVDPTKIELKV 224
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
++S+++N G ICG+ G+ +DP + +++ L L+
Sbjct: 225 ADGSISVAMNTHGEICGINSSEGLAVDPEQMEAIVAATKHRVTHLFTALNK 275
>gi|302685534|ref|XP_003032447.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
gi|300106141|gb|EFI97544.1| hypothetical protein SCHCODRAFT_15142 [Schizophyllum commune H4-8]
Length = 281
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 13/215 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
G T V+A V A++ RP +P G + I + SP A +E GR EE ++ L
Sbjct: 50 FGQTRVVAQVDAKMVRPPPERPFDGIITIHSELSPMASTEYEIGRASEE-EVVITRVLDK 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D SL V+ G+ W + + ++ GN+LD A AAL + P
Sbjct: 109 --LIKRSEA---VDRESLCVLAGERVWHVRLTIHCLADAGNMLDCACFAAMAALKHFRRP 163
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK--HYIVDATLEEESQMSS 177
V V + + P S+ + + P T G ++D + E +
Sbjct: 164 DVEVVGDEVTIHPP----SERAPVPLAINHAPYCLTFAFFGSGAPPLLDPSQLEATLALG 219
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+S+++N Q IC M K GG L IL ++ VA
Sbjct: 220 TLSVALNAQREICVMQKMGGAPLAADEILGLVDVA 254
>gi|167044511|gb|ABZ09186.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 272
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 24/206 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFEGRGGEELSAELSSA 56
+G T+V++ +K + +P PD G IF+ C+ P A P+ E + E++
Sbjct: 54 LGDTEVVSGIKVQPDKPF---PDMGDKGIFI-CTAEILPLAHPSAETGPPQPNVIEIARV 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + +SG IDLS +V+ + K ++ D +V DGNL DA A AA+ +
Sbjct: 110 VDRGI--RESGM---IDLSQMVLQKDKSVIGVFADNVVTDHDGNLFDACSYAAVAAIITS 164
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDT--SGVPVITTLTKVGKHYIVDATLEEESQ 174
IP + D++P V I D+ DT + +P+ T+ +G+ IVD L+E
Sbjct: 165 KIPKWEM-----KDDKP-VLIEDQ---ASDTPITTIPISVTMGLIGEFIIVDPNLDEWEC 215
Query: 175 MSSAVSISINRQGHICGMIKRGGVGL 200
+ + ++I+ N G+I + K G G
Sbjct: 216 LDARITITTNSDGNIVALQKGGSDGF 241
>gi|346971187|gb|EGY14639.1| exosome complex exonuclease RRP45 [Verticillium dahliae VdLs.17]
Length = 305
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 21/241 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + AE+ P A +P G + + SP A P FE + LS L+
Sbjct: 51 LGKTRVIVRISAEVTVPHADRPFDGIFQLATELSPMASPHFEPGKPTDTEMLLSRLLEKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA +D+ SL +V G W + D V+S DGN++DA A AAL + P
Sbjct: 111 I--RRSGA---LDMESLCLVAGAKVWSVRADVHVVSHDGNIVDAACLAAVAALRHFRKPD 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY------------IVDAT 168
V E + P ++ + P T G ++D
Sbjct: 166 AQVDGEDLTVFTP----AERAPVPLGWLHSPFCVTFAHFGARDGGPDGDGRDGVTLLDPD 221
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
EE ++ +IS+N+ G +C K GG ++ + +L ++A +L D +D +A
Sbjct: 222 WREEQLRVASCTISLNKHGEVCQASKLGGDAVEATTLLQCAALAARKVGELSDLVDRTLA 281
Query: 229 A 229
A
Sbjct: 282 A 282
>gi|413943885|gb|AFW76534.1| hypothetical protein ZEAMMB73_585681 [Zea mays]
Length = 280
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 16/182 (8%)
Query: 37 AEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVI 95
A+ +FE GR GE + EL + L ++ +D+ L VV GK W + +D ++
Sbjct: 2 ADLSFEPGRPGES-TIELGRVIDRGLRESRA-----VDMEFLCVVAGKHVWSVRVDLHIL 55
Query: 96 SSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEE---FLQFDTSGVPV 152
+ GNL+DA AALS P V D+ +V + D E L +P+
Sbjct: 56 DNGGNLIDAANIVALAALSTFWRPECTVGG----DDGQQVTVHDPEVRDLLPLTIHHMPI 111
Query: 153 ITTLTKVGKHYIV--DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMIS 210
+ T G+ IV D T +EE+ M ++ +N G +C + K GG G SV + +
Sbjct: 112 VVTFAYFGEGNIVVLDPTYKEEAVMGGRMTAIVNSNGDVCAIQKAGGEGPVSSVTMQCLR 171
Query: 211 VA 212
+A
Sbjct: 172 IA 173
>gi|393245799|gb|EJD53309.1| hypothetical protein AURDEDRAFT_110988 [Auricularia delicata
TFB-10046 SS5]
Length = 287
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T V+ VKAE+ P +PD+G + +D + P F+ G EE LS L
Sbjct: 66 LGDTTVVCGVKAEIAEPELDKPDEGFLVPNLDLPAISSPKFKPGAPSEEAQVLSNRLYDL 125
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L C + + LSSL + GK W +++D + I+ DGN DA AA AAL N
Sbjct: 126 LTSCDV---------LPLSSLCIEPGKAVWTIFLDIICINYDGNAFDATVAAAVAALKNA 176
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK-HYIVDATLEEESQM 175
+P ++E + S E + +P+ + H + D + EE +
Sbjct: 177 RLPKATF-----NEETRKTTCSRTEKQALTLNRIPLAMSFGVFDTLHLVADPSSFEEPLV 231
Query: 176 SSAVSISINRQGHICGMIKRGGV 198
SS ++I+++ GHIC + + G V
Sbjct: 232 SSTITIAVDAVGHICSLQQEGPV 254
>gi|430813254|emb|CCJ29382.1| unnamed protein product [Pneumocystis jirovecii]
Length = 280
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 16/228 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T ++AE+ +PS +P +G + + SP ++ ++ + LQ
Sbjct: 62 MGDTIFTCGIQAEITKPSIERPLEGWIVPHITFSPICSQKYKSNHHNHIAQAM---LQRI 118
Query: 61 L-LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L L S + LSSL++ E K W LY+D + ++ DGN +D A+ +AL T +P
Sbjct: 119 LSLMHTSNI---LPLSSLLISEYKAAWVLYVDLICLNYDGNAMDVAWIALISALETTKLP 175
Query: 120 SVHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIV-DATLEEESQMS 176
A +E E I +E+ L+ + + YI+ D +EES +S
Sbjct: 176 L------AIWNEDTESVICKKEYKNLKLNQRLFSASFGIFDGSSKYILSDLNDDEESLIS 229
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
++I I + + K GG+ + +I+ I +A +L + +D
Sbjct: 230 ETINIIIGNDKQLLSINKNGGITMTQEMIISCIKLAKERYDELYNLID 277
>gi|50290581|ref|XP_447723.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527034|emb|CAG60670.1| unnamed protein product [Candida glabrata]
Length = 303
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 24/251 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V + ++ P +P +G I + SP A P FE G E + ++
Sbjct: 51 MGKTLVQCRISCQITEPYEDRPFEGLFVISTEISPMAGPQFENGNSTGEDEVLCARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D ++ DG +DA A+ AALS+ P
Sbjct: 111 AV--RRSGA---LDVEGLCIVAGSKCWAVRADVHYLNCDGGFIDASCIAVMAALSHFRKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V E + + E + +P+ T + I+
Sbjct: 166 DISVHGEDVV----VYPVDEREPVPLGILHIPICVTFSFFNPQDTEENIKGDSNAEISII 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
DAT +EE +++++N+ + + K GG+ +D ++ A ++ QL D +
Sbjct: 222 DATTKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALQLMQCCHKAYEITEQLTDMILK 281
Query: 226 EIAAADADEDE 236
E+ A D+
Sbjct: 282 EVKHDLAKRDK 292
>gi|403418833|emb|CCM05533.1| predicted protein [Fibroporia radiculosa]
Length = 286
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 15/199 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ P P G + +D P F+ E + LS L
Sbjct: 69 LGDTTIVCGVKAEIAEPELDSPGDGFLVPNLDLPAICSPKFKPGPPTEEAQVLSDRLNEA 128
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ A + SSL + GK W LY+D I+ DGN DA A+ AAL NT +P
Sbjct: 129 LI-----ASGILPTSSLCIARGKAVWVLYVDATCINYDGNAFDATLLAMVAALKNTQLP- 182
Query: 121 VHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSS 177
EA DE+ + LQ S + + H + D T EE + +
Sbjct: 183 -----EATYDEETGRTTCSRKVKQPLQLGRSPTSMSFGIFD-STHVLADPTSFEEPLLDT 236
Query: 178 AVSISINRQGHICGMIKRG 196
+S+ ++ G + + + G
Sbjct: 237 TLSVVVDENGDLVSVAQLG 255
>gi|255718091|ref|XP_002555326.1| KLTH0G06644p [Lachancea thermotolerans]
gi|238936710|emb|CAR24889.1| KLTH0G06644p [Lachancea thermotolerans CBS 6340]
Length = 305
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 25/247 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V + + +P +P +G I + SP A P FE G E S ++
Sbjct: 51 MGKTKVHCRISCTITQPYEDRPFEGLFFISTETSPMAGPQFENGNNTGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D ++ DG +DA A+ L + P
Sbjct: 111 AV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLNCDGGFIDASCIAVMVGLLHFKKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
V V+ E + + + E + VP+ + + I+
Sbjct: 166 DVSVSGEQVTIHP----VDEREPVPLGVLHVPICVSFSFFNPEDAEENIKGESNSEICII 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
DATL+EE +++++N+ + + K GG+ +D +++ A ++ + D++++
Sbjct: 222 DATLKEELLRDGTLTVTLNKNREVVQVSKAGGLPMDALTLMECCHKAYKITEAITDQINN 281
Query: 226 EIAAADA 232
+ ADA
Sbjct: 282 -VLKADA 287
>gi|156101467|ref|XP_001616427.1| exosome complex exonuclease [Plasmodium vivax Sal-1]
gi|148805301|gb|EDL46700.1| exosome complex exonuclease, putative [Plasmodium vivax]
Length = 518
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + +E+ +P +P++G + + +D + +E E+ + ++
Sbjct: 47 IGHTKVICKITSEIVKPFDKRPNEGIIKVNLDIDSFTNVNDNSQISDEC-LEIKNLIERI 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + ++L SL ++ K W L ++ +VI +DGNL D+ + + L
Sbjct: 106 L-----KSSNLLNLESLCIIPHKKVWCLLVNIIVIENDGNLYDSCYLSAYSGL------- 153
Query: 121 VHVAA-EAASDEQPEVDISDEE--FLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQM 175
VH E D + I + E + P++TT I +D ++ EE M
Sbjct: 154 VHYRNNEVTVDSSGNIIIEEGETNYTPLSIHNTPILTTFAYFNCEDICLIDPSIHEEEFM 213
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
SS +S+++N+ G + ++K GG + IL+ I +A
Sbjct: 214 SSKLSVALNKNGKLVSILKPGGSPISYEKILEAIELA 250
>gi|119480721|ref|XP_001260389.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408543|gb|EAW18492.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 292
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 15/216 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + +E+ +P +P G I ++ + P ++ GR G+ L A ++ L
Sbjct: 51 LGKTSLIVRISSEVTKPRDDRPFDGIFTIALELTAMGSPAWDNGRQGD-LEAYVAHVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D V DGNL+DA + A L + P
Sbjct: 110 LVRHSNA-----LDTESLCILKGVSCWSIRADVHVTDYDGNLIDAACIGVMAGLQHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMS 176
V D Q V DE + + + P+ T GK I+DAT +EE
Sbjct: 165 DAVV-----KDGQVVVYGLDERVPVPLNITHKPLSVTFHTFDEGKRVILDATRKEEQASE 219
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ V +N G +C + K G +D V + SVA
Sbjct: 220 ADVVFGMNNAGDVCFVSKFSGSPVDALVFVSKSSVA 255
>gi|156551918|ref|XP_001607202.1| PREDICTED: exosome complex component RRP45-like [Nasonia
vitripennis]
Length = 412
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 16/196 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T A V ++ +P A +P++G + + V+ +P A FE E +A ++ L+
Sbjct: 50 LGQTRAAAQVSCDIQQPKASRPNEGMLHVNVELNPLAAQHFESGRQSEAAALINRQLEKS 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + +DL SL +V K W++ +D +I+ DGNL+D A AAL + P
Sbjct: 110 LKESRC-----VDLESLCIVADKKVWNIRVDVSIINHDGNLIDCASIAALAALMHFHRPD 164
Query: 121 VHVAAEAASDEQPEVDI---SDEEFLQFDTSGVPV-ITTLTKVGKHYIVDATLEEESQMS 176
V E EV I ++++ L PV I+ +T +VD + EE +
Sbjct: 165 VTSTGE-------EVIIHPFTEKDPLPLTLYHHPVCISFITFENGKTVVDPSYLEERVGA 217
Query: 177 SAVSISINRQGHICGM 192
+ +++ IN +C +
Sbjct: 218 AILTLGINAYREVCSL 233
>gi|119625656|gb|EAX05251.1| exosome component 9, isoform CRA_e [Homo sapiens]
Length = 242
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHIC 190
+ I++N+ IC
Sbjct: 221 LVIAMNKHREIC 232
>gi|302686574|ref|XP_003032967.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
gi|300106661|gb|EFI98064.1| hypothetical protein SCHCODRAFT_76318 [Schizophyllum commune H4-8]
Length = 291
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 13/198 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ +P P+ G + VD P F+ E + LS L
Sbjct: 77 LGDTTIVCGVKAEIAQPDLDSPEDGFIVPNVDLPAICSPKFKPGPPTEEAQVLSDRLNEV 136
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L A + SSL++ GK W LYID I+ DGN DA A+ AAL +T +P
Sbjct: 137 LT-----AHDVLPTSSLIIHPGKAAWVLYIDATCINYDGNAFDATLIAMIAALKSTRLP- 190
Query: 121 VHVAAEAASDEQP-EVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSA 178
A DE +V S + + +P+ + G + D T EE M +
Sbjct: 191 -----RAKYDEDTGKVTCSRHDRDPLTLTNLPIAMSFGVFNGDTIMSDLTSFEEPLMDTN 245
Query: 179 VSISINRQGHICGMIKRG 196
V++ + + G + + + G
Sbjct: 246 VTVILGQDGGVLSVTQAG 263
>gi|393796027|ref|ZP_10379391.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 271
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 23/204 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFE-GRGGEELSAELSS 55
+G ++V+ VK + RP PD G IF+ C+ P + P+ E G G ++ EL+
Sbjct: 54 LGDSEVVCGVKIQPDRPF---PDMGDKGIFI-CTAELLPLSHPSVETGPPGPDV-IELAR 108
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
+ + IDLS LV+ + K ++ D +V+ DGNL DA A AAL +
Sbjct: 109 VVDRGIRESHM-----IDLSQLVIEKNKSVVGVFADNVVVDYDGNLFDACAYAATAALLS 163
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
+ P E +D V+ + E + +PV T+ K+G H IVD +E M
Sbjct: 164 SKSPK----WEMQNDVPTLVEGGESEV---PITTIPVSVTMGKIGNHIIVDPNGDEWDSM 216
Query: 176 SSAVSISINRQGHICGMIKRGGVG 199
+ ++I+ + G+IC + ++GG+G
Sbjct: 217 DARITITTDSNGNICAL-QKGGIG 239
>gi|330804424|ref|XP_003290195.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
gi|325079706|gb|EGC33294.1| hypothetical protein DICPUDRAFT_154682 [Dictyostelium purpureum]
Length = 303
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 10/198 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V S+ ++ P +P++G D SP + + + G L EL ++
Sbjct: 49 LGKTRVYTSITCDIVEPKPERPNEGFYVFNTDISPMSSVSVDPNRGNPLENELGRIIEKG 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ ID SL ++ G W + I ++ GNLLD ++ AAL + P
Sbjct: 109 LKESRA-----IDTESLCIISGSKVWSIKISIHILDDCGNLLDCASISVIAALLHFRKPD 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAV 179
V V A+ I + E + P+ T IVD +EES M +
Sbjct: 164 VTVIGNEATIHP----IDEREPVPLSIHHTPISITFGFFPNEIMIVDPDNKEESVMDGKL 219
Query: 180 SISINRQGHICGMIKRGG 197
S +N ICG+ K GG
Sbjct: 220 SFLVNIHKEICGVSKGGG 237
>gi|19113177|ref|NP_596385.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe 972h-]
gi|1723274|sp|Q10205.1|RRP43_SCHPO RecName: Full=Exosome complex component rrp43; AltName:
Full=Ribosomal RNA-processing protein 43
gi|3451295|emb|CAA20427.1| exosome subunit Rrp43 (predicted) [Schizosaccharomyces pombe]
Length = 270
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 90/216 (41%), Gaps = 20/216 (9%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G + +KAE+ P P++G + ++ SP F+ +L+ +S L L
Sbjct: 66 GENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTL 125
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
I+L SL + E K W LY D + ++ DG+ D AA+ AAL +P+
Sbjct: 126 -----QQSNLINLQSLCIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPT- 179
Query: 122 HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK-----HYIVDATLEEESQMS 176
A DE E I T V + T + + D T EEE +
Sbjct: 180 -----AVWDEDLERVICASTL----TRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLST 230
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
++I +N +I +IK GG + P ++ I VA
Sbjct: 231 EFLTIMLNSSKNIVKIIKLGGTHIQPLLLKKCIEVA 266
>gi|329766295|ref|ZP_08257842.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137197|gb|EGG41486.1| exosome complex RNA-binding protein Rrp42 [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 271
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 35/210 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFE-GRGGEELSAELSS 55
+G ++V+ VK + RP PD G IF+ C+ P + P+ E G G ++ EL+
Sbjct: 54 LGDSEVVCGVKIQPDRPF---PDMGDKGIFI-CTAELLPLSHPSVETGPPGPDV-IELAR 108
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
+ + IDLS LV+ + K ++ D +V+ DGNL DA A AAL +
Sbjct: 109 VVDRGIRESHM-----IDLSQLVIEKNKSVVGVFADNVVVDYDGNLFDACAYAATAALLS 163
Query: 116 TGIPS------VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATL 169
+ P V E E P + +PV T+ K+G H IVD
Sbjct: 164 SKSPKWEMQNDVPTLVEGGESEVP-------------ITTIPVSVTMGKIGNHIIVDPNG 210
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGGVG 199
+E M + ++I+ + G+IC + ++GG+G
Sbjct: 211 DEWDSMDARITITTDSNGNICAL-QKGGIG 239
>gi|392587997|gb|EIW77330.1| ribosomal protein S5 domain 2-like protein [Coniophora puteana
RWD-64-598 SS2]
Length = 303
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 27/237 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V A++ +P +P +G + I + SP A P ++ E +S L
Sbjct: 56 LGKTRVLAQVDAKMVKPLPERPYEGLITIHSEISPMAGPEYDTARPSEEEIGISRMLDKI 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +D SL V+ G+ W L + IS GN+LD A AL + P
Sbjct: 116 V--KRSDA---LDKESLCVLAGQRVWHLRLTVHFISDAGNMLDCAVLASMVALRHFRRPE 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL-------TKVGKH----------- 162
V V + P S+ + +P+ T K+
Sbjct: 171 VEVIGDEVIIHSP----SERAPVPLALHHIPLCLTFAFFPPPSNPTSKNNEVQEETPPPI 226
Query: 163 YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+ D EE +S+++N Q +C + K GG+ L+P+ ++ ++ A F+ ++L
Sbjct: 227 VLADPNTLEERLADGTLSVALNVQRELCVLHKAGGLPLEPAEVMKVVQRATFLVKEL 283
>gi|426192955|gb|EKV42890.1| hypothetical protein AGABI2DRAFT_228615 [Agaricus bisporus var.
bisporus H97]
Length = 283
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 19/234 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T VIA V A++ +P+ +P +G ++I + SP A +E GR E ++ L
Sbjct: 50 LGKTMVIAQVDAKMVKPTPERPFEGSISIHSEISPMASSEYEAGRAASEEEVMINRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A ID SL ++ G W L I +S GN+LD A AL + P
Sbjct: 110 VL--RRSDA---IDKESLCILAGHRVWHLRITFHFLSDAGNMLDCACLAGIVALRHFRRP 164
Query: 120 SVHVAAEAASDEQP------EVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
V V + P + I F F + P TT ++D + E+
Sbjct: 165 EVEVIGDEVIVHPPTERAPVPLAIHHTPFC-FTFAFFPDATTSP------VLDPSQLEQR 217
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ +SI++N Q +C + K GGV L I+ ++ + +++L + +++ +
Sbjct: 218 LSAGLLSIALNAQKELCVLQKLGGVPLPHEEIIRLVDTSVQKAKELHEFVETRL 271
>gi|321250323|ref|XP_003191768.1| ribosomal RNA-processing protein 43 [Cryptococcus gattii WM276]
gi|317458235|gb|ADV19981.1| Ribosomal RNA-processing protein 43, putative [Cryptococcus gattii
WM276]
Length = 303
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T ++ VKAE+G P P +G V +D + P F+ G G+E + S+ L
Sbjct: 93 MGDTTMVCGVKAEIGEPDTETPGEGFVVPNIDLPALSSPRFKPGPPGDE-AQTYSNWLNE 151
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ K+ I LSSL++ GK W LYID + I+ DGN DA A+ AAL NT +P
Sbjct: 152 LLVSSKT-----IPLSSLLIAPGKAAWVLYIDVVCINYDGNAFDAAVLAVMAALRNTRLP 206
>gi|395329798|gb|EJF62183.1| ribosomal protein S5 domain 2-like protein [Dichomitus squalens
LYAD-421 SS1]
Length = 291
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 13/198 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ VKAE+ P +P G + +D P F+ + + +S L
Sbjct: 73 LGSTTVVCGVKAEIAEPELDKPKDGFLVPNLDLPAICSPKFKPGPPTDEAQVISDRLNDV 132
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ SG + SSL + K W LY+D I+ DGN DA A+ AAL NT +P
Sbjct: 133 LIS--SGV---VSTSSLCIEPSKSAWVLYVDATCINYDGNAFDATLLAMVAALKNTRLP- 186
Query: 121 VHVAAEAASDEQPEVDISDEEFLQ-FDTSGVPVITTLTKVGKHYIV-DATLEEESQMSSA 178
+A DE + I + + +PV + YI+ D T EE + ++
Sbjct: 187 -----KARYDEDRQQTICSRKVKEPLQIGRLPVSFSFGIFDGAYILADPTSFEEPLLDTS 241
Query: 179 VSISINRQGHICGMIKRG 196
VS+ ++ G + +++ G
Sbjct: 242 VSVVVDDAGGLISVMQLG 259
>gi|448081285|ref|XP_004194851.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
gi|359376273|emb|CCE86855.1| Piso0_005372 [Millerozyma farinosa CBS 7064]
Length = 305
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 35/242 (14%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHC 60
G++ + V AE+ +P +P +G I + SP A P FE GR ++ L
Sbjct: 53 GNSKLTVRVSAEVVKPFEDRPFEGIFTINTEISPMASPQFEQGRVSDD------EILISR 106
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP- 119
L+ +DL +L +V G W + D V+ DG ++DA + AL + P
Sbjct: 107 LIEKAIRRSNALDLEALCMVAGAKVWYIRADVNVLEFDGGIIDAASFGVMVALQHFRKPD 166
Query: 120 -SVH---VAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH------------- 162
S+H V + + +P + VP+ T +
Sbjct: 167 VSIHGSDVIVHSLQEREP---------VPLSVLHVPICVTFSFFNPSDSEENIKGELNEE 217
Query: 163 -YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
I+DAT +EES ++ I+IN+ I + K GG+ +D V++D+ A ++ L +
Sbjct: 218 ISIIDATEKEESLRDGSLVITINKNREIVQLSKNGGLPIDVFVLMDLSKKAYTIAESLSE 277
Query: 222 KL 223
K+
Sbjct: 278 KI 279
>gi|167044982|gb|ABZ09647.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 272
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 24/206 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFEGRGGEELSAELSSA 56
+G T+V++ +K + +P PD G IF+ C+ P A P+ E + E++
Sbjct: 54 LGDTEVVSGIKIQPDKPF---PDMGDKGIFI-CTAEILPLAHPSAETGPPQPNVIEIARV 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ + +SG IDLS LV+ + K ++ D +V DGNL DA A AA+ +
Sbjct: 110 VDRGI--RESGM---IDLSQLVLQKDKSVIGVFADNVVTDHDGNLFDACSYAAVAAIITS 164
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDT--SGVPVITTLTKVGKHYIVDATLEEESQ 174
IP + D++P V I D+ DT + +P+ T+ +G+ IVD L+E
Sbjct: 165 KIPKWEM-----KDDKP-VLIEDQ---ASDTPITTIPISVTMGLMGEFIIVDPNLDEWEC 215
Query: 175 MSSAVSISINRQGHICGMIKRGGVGL 200
+ + ++I+ N G+I + K G G
Sbjct: 216 LDARITITTNSDGNIVALQKGGSDGF 241
>gi|67539882|ref|XP_663715.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
gi|40738896|gb|EAA58086.1| hypothetical protein AN6111.2 [Aspergillus nidulans FGSC A4]
gi|259479699|tpe|CBF70162.1| TPA: exosome complex endonuclease 2/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G08860)
[Aspergillus nidulans FGSC A4]
Length = 295
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 15/216 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T ++ + AE+ +P +P G I ++ + P +E GR G+ L +++ L
Sbjct: 51 LGKTSLVVRISAEVAKPHDDRPFDGIFNIAMELTAMGSPAWENGRQGD-LETYVTNVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D + DGNL+DA + A L + P
Sbjct: 110 VIRHSNA-----LDTESLCILKGVSCWTIRADVHITDYDGNLIDASCIGVMAGLQHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMS 176
V D Q V DE + + P+ T GK I+DAT +EE
Sbjct: 165 DAVV-----KDGQVIVYGLDERVPAPLNITHKPLSVTFHTFDDGKLAILDATRKEEQASE 219
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ V I +N G +C + K G +D V + S+A
Sbjct: 220 ADVVIGMNNAGDVCYLSKFQGSPVDALVFITKTSLA 255
>gi|32566065|ref|NP_508024.2| Protein EXOS-7 [Caenorhabditis elegans]
gi|24817316|emb|CAB07377.2| Protein EXOS-7 [Caenorhabditis elegans]
Length = 312
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 17/194 (8%)
Query: 3 STDVIASVKAELGRPSAM--QPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+TDV+A +K EL A + K + VD S A F G+GG+E + ELS+A Q
Sbjct: 55 TTDVLAGIKLELESYDAETEKEPKQPINFNVDFSANASSQFAGKGGDEYAEELSAAFQAA 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L+ + +G W + +D V+ DG++ DA+ AI ALS+ P
Sbjct: 115 Y---SKALDIMPNLAKTQLADGYR-WKINVDISVLQWDGSVSDAISIAIIGALSDLEFPE 170
Query: 121 VHVAAEAASD-----EQPEV--DISDEE----FLQFDTSGVPVITTLTKVGKHYIVDATL 169
VA + ++P+V ++ DE + D P++ T++K+G +VD T
Sbjct: 171 GDVAPDDGGKVRIVLKRPKVAGNVRDENVQVAMWKLDVMRCPLLLTISKIGTANLVDCTP 230
Query: 170 EEESQMSSAVSISI 183
EEE + S + + +
Sbjct: 231 EEECCIRSQLLVGL 244
>gi|422294053|gb|EKU21353.1| exosome complex rna-binding protein rrp42, partial [Nannochloropsis
gaditana CCMP526]
Length = 188
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 83/158 (52%), Gaps = 8/158 (5%)
Query: 82 GKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA---EAASDEQPEVDIS 138
GK W +Y+D +V+ GN+LDA+ A AAL +P V + ++A++ + ++S
Sbjct: 2 GKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELS 61
Query: 139 DEEFLQ---FDTSGVPVITTLTKVGKHYIVDATLEEESQ--MSSAVSISINRQGHICGMI 193
+ L +P+ TL ++G +VD EEE++ + + ++++++ GHICG+
Sbjct: 62 STDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLY 121
Query: 194 KRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231
K G G + + A +++++++ L + I D
Sbjct: 122 KGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTD 159
>gi|168006598|ref|XP_001755996.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692926|gb|EDQ79281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 319
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 29/217 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T ++A VK E+ PS P++G+VA+ CSP P +S +LS+A
Sbjct: 70 IGNTTMLAGVKLEVITPSTASPNQGQVAVDFQMPSICSPLVRPGRPAEAAWVVSEQLSNA 129
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L + ++L L +V GK W Y+D + +DG+LLDA A AAL++
Sbjct: 130 LV---------SSNFVNLQQLCIVPGKAAWIAYVDVYCLDADGSLLDAALLAAVAALTHL 180
Query: 117 GIPSVHVAAEA-----------ASDEQPEVDISDEEFL-----QFDTSGVPVITTLTKVG 160
+P+V V A E + +E+ + + + S +P+ T
Sbjct: 181 QLPAVKVTETGRVVPLKNHNGDAGQEVDSIAKKNEDQIVKSRQRLERSSMPIALTCVSHR 240
Query: 161 KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG 197
KH + D + EEES + ++++ ++ G + K GG
Sbjct: 241 KHLLADPSAEEESILQMSLTVIMDTSGRLISFYKPGG 277
>gi|326489127|dbj|BAK01547.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 235
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 9/162 (5%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 130
+D+ SL VV GK W L +D ++ + GNL+DA A AALS P V D
Sbjct: 20 AVDMESLCVVAGKHVWSLRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGG----D 75
Query: 131 EQPEVDISDEEF---LQFDTSGVPVITTLTKVG--KHYIVDATLEEESQMSSAVSISINR 185
+ +V + D E L +P+ T G ++D T +EE+ M ++ +IN
Sbjct: 76 DGQQVTVHDPEVMDPLPLTIHHLPIAVTFAYFGDGNIMVIDPTYKEEAVMGGRMTATINS 135
Query: 186 QGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
G +C + K GG G+ SVI+ + +A+ + + K+ +++
Sbjct: 136 NGDVCAIQKAGGEGVMSSVIMQCLRIASVKAADITSKITTKV 177
>gi|145344856|ref|XP_001416940.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577166|gb|ABO95233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 285
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 12/202 (5%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTA-EPTFEGR--GGEELSAELSSALQ 58
G+T A V A + P A +P++G + I VD +P A E +GR G E +A ++
Sbjct: 55 GATTACAGVTATIATPDATRPEEGFLEIAVDHAPQASEDARDGRTRGRREAAAAACASAV 114
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
+ A G DL L V G W + +D +V+ DG D A+ AAL + +
Sbjct: 115 ------ANAAVLGKDLKQLCVERGTFAWRVRVDVIVLCDDGGAADCAVTAVMAALRDCVL 168
Query: 119 PSVHVAAEAASDEQPEVDISDE---EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
P V V + E ++ + + + D +PV T +H +VD T EEE+
Sbjct: 169 PEVAVTRGKVALEGDGTAMNGDGVRKGTRLDVQTMPVCLTTALYREHLLVDPTREEEALS 228
Query: 176 SSAVSISINRQGHICGMIKRGG 197
VS+ + G + G+ K GG
Sbjct: 229 ECEVSVVLTEDGLLRGVFKPGG 250
>gi|351710102|gb|EHB13021.1| Exosome complex exonuclease RRP45 [Heterocephalus glaber]
Length = 364
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVAPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI-- 118
L K D SL V G+ W + +D +++ DGN+ DA A+I A +++
Sbjct: 110 LRNLKC-----TDTESLCAVAGEKVWQIRVDIHLLNHDGNITDA--ASIDAIVASCHFRR 162
Query: 119 PSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
P V V E E D L + V + G + +VD EE M
Sbjct: 163 PDVSVQGEVTLYTPEE---HDPVALSIHHMPICVSFAFFQQGTYLLVDPNEREECVMDGL 219
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 220 LVIAMNKHREICTIQYSGGIML 241
>gi|71001078|ref|XP_755220.1| exosome complex endonuclease 2/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66852858|gb|EAL93182.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
gi|159129307|gb|EDP54421.1| exosome complex endonuclease 2/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 292
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 15/216 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T +I + +E+ +P +P G I ++ + P ++ GR G+ L A ++ L
Sbjct: 51 LGKTGLIVRISSEVTKPRDDRPFDGIFTIALELTAMGSPAWDNGRQGD-LEAYVAHVLDR 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +D SL +++G CW + D V DGNL+DA + A L + P
Sbjct: 110 LVRHSNA-----LDTESLCILKGVSCWSIRADVHVTDYDGNLVDAACIGVMAGLQHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMS 176
V D Q V DE + + + P+ T GK I+DAT +EE
Sbjct: 165 DAVV-----KDGQVIVYGLDERVPVPLNITHKPLSVTFHTFDEGKRVILDATRKEEQASE 219
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ V +N G +C + K G +D V + SVA
Sbjct: 220 ADVVFGMNNAGDVCFVSKFSGSPVDALVFVSKSSVA 255
>gi|148703330|gb|EDL35277.1| exosome component 8, isoform CRA_e [Mus musculus]
Length = 146
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQF 145
W LY D + + DGN+LDA A+ AAL N +P V + E A EV++ + +L
Sbjct: 3 WVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA---LAEVNLKKKSYLNV 59
Query: 146 DTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSV 204
T+ PV T+ IVD T EEE + +++ + G +C + K GG GL +
Sbjct: 60 RTN--PVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGKLCCLHKPGGSGLTGAK 117
Query: 205 ILDMISVANFVSRQLMDKLDSEI 227
+ D +S A +++ LD I
Sbjct: 118 LQDCMSRAVTRHKEVSKLLDEVI 140
>gi|395328492|gb|EJF60884.1| ribosomal protein S5 domain 2-like protein [Dichomitus squalens
LYAD-421 SS1]
Length = 281
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 13/225 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+A V ++ +P +P +G ++I + SP A +E GR EE A L+ L
Sbjct: 51 MGKTRVLAQVDGKMVKPPPERPLEGIISIHSELSPMASNEYEPGRPTEEEVA-LTRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +S A +D SL V+ G+ W + + V+S GN++D A AL + P
Sbjct: 110 VL--RRSDA---VDKESLCVLAGQRVWHIRLTIHVLSDAGNMVDCACLAGIVALKHFRRP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG-KHYIVDATLEEESQMSSA 178
V V + + P S+ + P T +VD EE+ +
Sbjct: 165 EVEVEGDEITVHHP----SERAPVPLSMHHTPFCFTFAFFPDAPPLVDPARLEETLSAGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+S+++N Q +C + K GG L +L ++ +A +R+L D+L
Sbjct: 221 LSVALNAQKELCVVQKAGGSPLPAEEVLAIMDIAVAKAREL-DRL 264
>gi|409079432|gb|EKM79793.1| hypothetical protein AGABI1DRAFT_38968 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 352
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG + ++ VKAE+ P PD+G + VD P F+ + + LS L
Sbjct: 79 MGGSTIVCGVKAEIAEPDLENPDEGFLVPNVDLPAMCHPKFKPGPPSDEAQVLSERLFET 138
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L + SLVV GK W LY+D I+ DGN+ DA A+ +AL NT +P
Sbjct: 139 LTSSNF-----MSPKSLVVHPGKFVWTLYVDATCINYDGNVFDATLIAMVSALLNTRLP 192
>gi|254586253|ref|XP_002498694.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
gi|238941588|emb|CAR29761.1| ZYRO0G16412p [Zygosaccharomyces rouxii]
Length = 306
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 109/252 (43%), Gaps = 26/252 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T + + ++ +P +P +G I + SP A P FE G E ++
Sbjct: 51 MGKTKIHCRISCQIAQPYEDRPFEGLFLISTETSPMAGPQFENGNSTGEDEVLCVRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG LLDA A+ AL + P
Sbjct: 111 AV--RRSGA---LDVEGLCIVAGSKCWAIRADVHFLDCDGGLLDASCIAVMTALLHFKKP 165
Query: 120 SVHVAAEAASDEQPEVDISDE-EFLQFDTSGVPVITTLTKVGKH--------------YI 164
+ V + + V +DE E + +P+ T + I
Sbjct: 166 DITVLGDRVT-----VHPTDEREPVPLGILHIPICVTFSFFNPQDTEENIKGDSNAEIAI 220
Query: 165 VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
+DA L+EE +++++N+ + + K GG+ +D +++ A ++ +L D++
Sbjct: 221 IDANLKEELLRDGTLTVTLNKNREVVQVSKAGGLPMDALSLMENCYKAYTITEKLTDQIL 280
Query: 225 SEIAAADADEDE 236
+ + D+ ++
Sbjct: 281 ACVKEDDSKRNQ 292
>gi|387192361|gb|AFJ68652.1| exosome complex component RRP45 [Nannochloropsis gaditana CCMP526]
gi|422294192|gb|EKU21492.1| exosome complex component RRP45 [Nannochloropsis gaditana CCMP526]
Length = 620
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 57/252 (22%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V +EL P +P +G + + V+ SP A + E+ ++ C
Sbjct: 57 LGKTRVLTVVTSELTPPYPDRPAEGFLNLNVEYSPMATLGIDNARTNPTLVEVDRVIERC 116
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ +D +L V+ G W L D ++ GN++DA A AAL + +P
Sbjct: 117 LRQSRA-----LDTEALCVIAGSKVWSLRCDVRILDDAGNVVDAACLATVAALMHFRLPE 171
Query: 121 VHVAAEAASDEQPEVDISDEE--------------------------------------- 141
V V SDE+ +D E
Sbjct: 172 VTVLT-GGSDERSNSSANDGESSVGRVRGGGGLGHASVVVHHSFEKEPSALPIHHVPICV 230
Query: 142 -FLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGL 200
F+ F+TS P+++ ++D T EE M ++ SIN +C M K GG+ L
Sbjct: 231 TFVLFNTS--PIVS---------VIDPTEREELVMGGRITFSINVHREVCAMQKIGGLAL 279
Query: 201 DPSVILDMISVA 212
P+ + + +A
Sbjct: 280 APTSLARLAEIA 291
>gi|392590636|gb|EIW79965.1| hypothetical protein CONPUDRAFT_166613 [Coniophora puteana
RWD-64-598 SS2]
Length = 289
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 92/202 (45%), Gaps = 21/202 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
MG T ++ VKAE+ P +P +G + +D CSP +P + LS L+ A
Sbjct: 72 MGDTRIVCGVKAEIAEPELDKPHEGFLVPNLDLPALCSPKFKPGPPAEEAQILSERLNEA 131
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L A + L SL + GK W +YID + ++ DGN DA A+ AAL NT
Sbjct: 132 LV---------ASGILPLESLAIHPGKAVWTIYIDAICLNFDGNAFDAALLAMVAALYNT 182
Query: 117 GIPSVHVAAEAASDEQP-EVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQ 174
+P A DE +E + + + P+ T+ + ++ D T EE
Sbjct: 183 RLPV------ATFDEDTGHTTCLRKETVPLELTCKPISTSFGMLDSLQVLSDPTSFEEPL 236
Query: 175 MSSAVSISINRQGHICGMIKRG 196
M + VS+ +N +G + + + G
Sbjct: 237 MDTTVSVVVNEKGDLLAVNELG 258
>gi|281207355|gb|EFA81538.1| Putative exosome complex exonuclease [Polysphondylium pallidum
PN500]
Length = 470
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 10/200 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V +V E+ P +P++G D SP + + + G + AEL ++
Sbjct: 49 LGRTRVYTTVTCEVTEPKPERPNEGFFIFNTDVSPMSSVSVDSSRGNPVEAELGRLIERG 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + ID +L +V G W + + V+ GNLLD ++ AL + P
Sbjct: 109 LKESR-----AIDTEALCIVAGSKVWKVKTNVHVLDDCGNLLDCASISVITALLHFRKPD 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAV 179
V V A+ I + E + P+ T K IVD +EE M +
Sbjct: 164 VTVVGNDATIH----PIDEREPVPLSIHHTPISITFGFFPKAIMIVDPDNKEEQVMDGKL 219
Query: 180 SISINRQGHICGMIKRGGVG 199
S +N ICG+ K GG+
Sbjct: 220 SFYVNVHKEICGVSKGGGMS 239
>gi|426192626|gb|EKV42562.1| hypothetical protein AGABI2DRAFT_195867 [Agaricus bisporus var.
bisporus H97]
Length = 318
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG + ++ VKAE+ P PD+G + VD P F+ + + LS L
Sbjct: 79 MGGSTIVCGVKAEIAEPDLENPDEGFLVPNVDLPAMCHPKFKPGPPSDEAQVLSERLFET 138
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L + SLVV GK W LY+D I+ DGN+ DA A+ +AL NT +P
Sbjct: 139 LTSSNF-----MSPKSLVVHPGKFVWTLYVDATCINYDGNVFDATLIAMVSALLNTRLP 192
>gi|281348318|gb|EFB23902.1| hypothetical protein PANDA_021543 [Ailuropoda melanoleuca]
Length = 196
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 14/153 (9%)
Query: 77 LVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVD 136
L + GK+ W LY D + + DGN+LDA A+ AAL N +P V + E EV
Sbjct: 45 LCISPGKLSWVLYCDIICLDYDGNILDACTFALLAALKNVQLPEVTINEETG---LAEVH 101
Query: 137 ISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAVSISINRQGHICGMIKR 195
+ + +L T PV T+ IVD T EEE + +++ ++ +G +C + +
Sbjct: 102 LKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGTLTVVMDEEGKLCCL-HK 158
Query: 196 GGVGLDPSVILDMISVANFVSR-----QLMDKL 223
G+GL + + D +S A V+R +LMD++
Sbjct: 159 PGIGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 189
>gi|255513310|gb|EET89576.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 258
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 18/199 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK PD+G + + + P A +E + EL +
Sbjct: 51 LGATKVLAGVKLVQEDVYEDTPDQGNLVVSAELLPLAAAEYETGPPSPEAIELGRVVDRA 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ AG IDL SL++ EGK W +Y+D V++ DGNL DA A +A+ + +P
Sbjct: 111 IR-----AGNCIDLKSLLLEEGK-AWTVYVDVYVLNFDGNLFDASVIAAMSAILDARVPE 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
A+ +D E+ L+ D V TT K+GK ++D T EE M + ++
Sbjct: 165 Y---ADGKADYTKR-----EKKLKVDN--VVSSTTFAKIGKAILLDPTGNEELGMDARLT 214
Query: 181 ISINRQGHICGMIKRGGVG 199
IS + G + +++G G
Sbjct: 215 ISTD--GKMIRAMQKGLAG 231
>gi|115443084|ref|XP_001218349.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188218|gb|EAU29918.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 294
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 1 MGSTDV--IASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSAL 57
+G T V I + +E+ +P +P G I ++ + P ++ GR G+ L +++ L
Sbjct: 51 LGKTRVSLIVRISSEVTKPRDDRPFDGIFTIALELTAMGSPAWDNGRQGD-LETYVTNVL 109
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ + +D SL +++G CW + D + DGNL+DA + A L +
Sbjct: 110 DRVVRHSNA-----LDTESLCILKGVSCWSVRADVHITDYDGNLIDAACIGVMAGLQHFR 164
Query: 118 IPSVHVAAEAASDEQPEVDISDEEF-LQFDTSGVPVITTLTKV--GKHYIVDATLEEESQ 174
P V D Q V DE + + + P+ T G H ++DAT +EE
Sbjct: 165 RPDAVV-----KDGQVIVYGVDERVPVALNITHKPLSVTFHTFDEGNHVVLDATRKEEQA 219
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ V I +N G +C M K G +D V + +VA
Sbjct: 220 SEADVIIGMNNAGDVCYMSKFSGSPVDAMVFVRKSAVA 257
>gi|242003305|ref|XP_002422688.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
corporis]
gi|212505510|gb|EEB09950.1| Exosome complex exonuclease RRP45, putative [Pediculus humanus
corporis]
Length = 349
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G + V++ VK E+ P A++P++G + V+ S A P E LS + L C
Sbjct: 50 LGESKVVSQVKCEIQEPQAVRPNEGLFFMNVELSLMASPYIEPGRASNLSTHIQRLLDKC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ IDL SL +V W + ID V++ DG+L+D + AAL++ P
Sbjct: 110 LYDSKA-----IDLESLCIVAEDKVWAIKIDVHVLNHDGSLVDCASISALAALAHFKRPD 164
Query: 121 V-------HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
V V + A D P L + V L ++ D T EE
Sbjct: 165 VTTDGEEIKVHSTAERDPIP---------LTLHHYPICVSFALLNNSENIFADPTEIEER 215
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVIL 206
+ ++ IN IC + G + P +I+
Sbjct: 216 VSDANLTFGINAYKEICCLHLGGTALIKPKLIM 248
>gi|401881827|gb|EJT46109.1| hypothetical protein A1Q1_05320 [Trichosporon asahii var. asahii
CBS 2479]
gi|406701090|gb|EKD04244.1| hypothetical protein A1Q2_01463 [Trichosporon asahii var. asahii
CBS 8904]
Length = 312
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T ++ +KAE+ PS PD+G V +D + P F+ + + +S+ L
Sbjct: 70 MGDTTIVCGIKAEIAEPSGAAPDEGFVVPNIDLPALSSPKFKPGPPVDEAQTMSNWLNDM 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L+ ++ + SL++ GK W +YID + I+ DGN DA A+ AAL NT +PS
Sbjct: 130 LVSSRT-----LPPKSLIIAPGKAAWVIYIDVVCINYDGNAYDAAVLAVMAALRNTRLPS 184
>gi|330797129|ref|XP_003286615.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
gi|325083440|gb|EGC36893.1| hypothetical protein DICPUDRAFT_31155 [Dictyostelium purpureum]
Length = 276
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 31/211 (14%)
Query: 1 MGSTDVIASVKAELG-RPSAMQPDKGKVA---------IFVDCS--PTAEPTFEGRGGEE 48
+G+T V+ V+AE+G +PS DK K+ IF++ P TF +
Sbjct: 52 IGNTSVVCGVRAEVGEKPST---DKSKLQSINNHENSNIFINIELGPICSNTFSSTKPSD 108
Query: 49 LSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAA 108
++ L S L + D EGK W LY+D + DGN+ DA +
Sbjct: 109 MAMTLCSRLNSLI-----NRLEIPDTDFYFDEEGKALWYLYVDIYCLDYDGNIYDAAVLS 163
Query: 109 IKAALSNTGIPS--VHVAAEAASD-EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV 165
I +AL N +P + E D EQP +++ + +L +P T+ + + + +
Sbjct: 164 ILSALKNVKLPKGIIENNDEYYKDLEQPLRELNIKHYL------IP--TSFSVIEDYILS 215
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRG 196
D +LEEE + ++I+ N IC ++ G
Sbjct: 216 DPSLEEEKLSTGTINITYNEHKEICLLLVTG 246
>gi|363752717|ref|XP_003646575.1| hypothetical protein Ecym_4741 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890210|gb|AET39758.1| hypothetical protein Ecym_4741 [Eremothecium cymbalariae
DBVPG#7215]
Length = 305
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V AE+ +P +P +G I + SP A FE G E +S ++
Sbjct: 51 LGETKVHCRTTAEISQPYDNRPFEGLFLISTEMSPMAGTQFEHGNNTGEDEVLISRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +DL L + G CW + D + DG +DA A+ A+L + P
Sbjct: 111 SV--RRSGA---LDLEGLCISAGSKCWSIRADVHFLDCDGGFIDASCIAVMASLLHFRKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG--------------KHYIV 165
V V E + I + E + +P+ T + + I+
Sbjct: 166 DVTVFGERVTVHS----IEEREAVPLGILHIPICVTFSFFNPDATEENIKGDSNKEISII 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DA+L+EE +++++N+ + ++K GG+ +D +++ A ++ + ++
Sbjct: 222 DASLKEEHLRDGVLTVTLNKNREVVQVLKAGGLPMDALTLMECCQKAYHITETITTQI 279
>gi|221057472|ref|XP_002261244.1| exosome complex exonuclease [Plasmodium knowlesi strain H]
gi|194247249|emb|CAQ40649.1| exosome complex exonuclease, putative [Plasmodium knowlesi strain
H]
Length = 514
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 99/217 (45%), Gaps = 18/217 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + +E+ +P +P++G + + +D + +E E+ + ++
Sbjct: 47 IGHTKVICKITSEIVKPFDKRPNEGIIKVNLDIDSFTNVNDNSQISDE-CLEIKNLIERI 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + ++ SL ++ K W L ++ +V+ +DGNL D+ + + L
Sbjct: 106 L-----KSSNLLNFESLCIIPHKKVWCLLVNIIVVENDGNLYDSCFLSAYSGL------- 153
Query: 121 VHVAA-EAASDEQPEVDISDEE--FLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQM 175
VH E D + I E + P++TT I +D +++EE M
Sbjct: 154 VHYRNNEVTVDSIGNIFIEQGETNYTPLSIHNTPILTTFAYFNCEDICLIDPSIQEEEFM 213
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
SS +S+++N+ G + ++K GG + IL+ I +A
Sbjct: 214 SSKLSVALNKNGKLVSILKPGGSPISYEKILEAIELA 250
>gi|170091308|ref|XP_001876876.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648369|gb|EDR12612.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 276
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 23/189 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ VKAE+ P + +G + +D CSP +P + LS L+ A
Sbjct: 58 LGNTTVVCGVKAEIAEPELDEGVRGFLVPNLDLPAMCSPRFKPGPPSEEAQVLSDRLNDA 117
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L A + L+SL + K W LY+D + I+ DGN+ DA A+ AL NT
Sbjct: 118 LV---------ASNILPLTSLSIHPNKAAWVLYVDAICINYDGNVFDAALIAMVEALRNT 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKV-GKHYIVDATLEEE 172
+P +A DE+ + L+ + + +PV + H + D T EE
Sbjct: 169 QLP------KATYDEETGRTTCSRKIKVPLELNHTSLPVPLSFGVFDSTHVLADPTSFEE 222
Query: 173 SQMSSAVSI 181
+ + +SI
Sbjct: 223 PLLDTTISI 231
>gi|209879934|ref|XP_002141407.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209557013|gb|EEA07058.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 414
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 26/229 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSP-TAEPTFEGRGGEE--LSAELSSAL 57
+G T V+ +KAEL P+ +P +G+V VD P + P + E LS EL++ +
Sbjct: 41 IGKTHVLCIIKAELMIPNIDRPSEGQVTFSVDYGPLSLNPNGQVYRHERNALSIELANYI 100
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ L ++GA D L ++ G W + D + DGNL D A +A +
Sbjct: 101 ERTL--KETGA---FDTEVLCIISGLCAWSIRCDIRALCDDGNLFDTCILATLSAFRHFR 155
Query: 118 IPSVHVAAEAASDE----------QPEVDISDEEFLQFDTSGVPVITTL--TKVGK--HY 163
+ ++ + + E I + + + + P+ ++ T+V Y
Sbjct: 156 YKDIDCSSFLNKLKLNKYKNKDYLRIEQAIKNMDMIPLNIYHFPLSISIGYTRVNNELQY 215
Query: 164 IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
IVD EEES + + + I+IN +CG+ K GG L +D I+ A
Sbjct: 216 IVDPCSEEESILQAVLHIAINGGQQVCGLSKPGGEKL----TIDQINFA 260
>gi|346467463|gb|AEO33576.1| hypothetical protein [Amblyomma maculatum]
Length = 215
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+ VKAEL P+ P +G G GE+ A++ S L
Sbjct: 43 MGCTTVVCGVKAELAEPAVAMPKQGYXX--------------GPPGEQ--AQVLSKLMLD 86
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L +DL L + EGK+ W L +D + DGN+ +A A AAL + +P
Sbjct: 87 ILTSSDS----LDLEKLCIEEGKLVWSLNVDLTCLDYDGNVAEACILAATAALCSLTLPK 142
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI-VDATLEEESQMSSAV 179
V +D + V + EE + P+ T + I VD T EEE +
Sbjct: 143 V-----LTTDGEVNVLLEREE---AKVTEGPLAATFAVLADDTIVVDPTHEEECLAAETF 194
Query: 180 SISINRQGHICGMIKRGGVGL 200
++ +N ICG+ K GG L
Sbjct: 195 TVILNADNKICGVHKPGGSAL 215
>gi|164661509|ref|XP_001731877.1| hypothetical protein MGL_1145 [Malassezia globosa CBS 7966]
gi|159105778|gb|EDP44663.1| hypothetical protein MGL_1145 [Malassezia globosa CBS 7966]
Length = 291
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 114/283 (40%), Gaps = 60/283 (21%)
Query: 1 MGSTDVIASVKAELGRPSA----------------MQPDKGKVAIFVDCSPTAEPTFEGR 44
+GST+V+ VK E+ A P K + + VD +P+
Sbjct: 13 LGSTEVMCGVKLEMDSQEAPTVTVSQGERKIDFTPWLPSKPCIQVQVDYTPSLLREHNAS 72
Query: 45 GGEELSAELSSALQHCLLGGKSGAGAG-IDLSSLVVVEGKVCWDLYIDGLVIS-SDGNLL 102
L++ + LQ C SG G + VVV W L++D V+S S GN+L
Sbjct: 73 ELSMLTSTMQDMLQACY--AFSGDSYGPLPARQFVVVPYAKYWVLHVDVYVMSWSGGNVL 130
Query: 103 DALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF-----LQFDTSG-------- 149
D + AA+ AL NT IP V A ++ Q E D +E+ ++F T G
Sbjct: 131 DTVFAAVFCALWNTRIPETRVMAMDRTN-QGEQDAMNEDHDDPAGIKFITRGRKNTSQNT 189
Query: 150 ----------------------VPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQG 187
VPV ++ +++D TLEEE +S V++ + QG
Sbjct: 190 NAVDYALVNEWEHGRALEGREDVPVCVSVYPFQGTFLLDPTLEEECALSCCVAVLASPQG 249
Query: 188 HICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230
+ G+ +RG + + LD I A V Q L + A+
Sbjct: 250 RLYGVRQRG----EGELTLDSIHKATEVGLQYAKLLAQSLPAS 288
>gi|224002617|ref|XP_002290980.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972756|gb|EED91087.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 222
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS--------------PTAEPTFEGRGGE 47
+TDV+ SVKA+L PS+ +P++G V + VD S ++ R
Sbjct: 70 STTDVLCSVKADLVHPSSSKPNEGVVELNVDLSLCGGSVSGFMGGGSHSSSAGKRKRLQR 129
Query: 48 ELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGA 107
E +++SS LQ +L ++ LVV GK W L ID V+ DG +LDA
Sbjct: 130 EEESQISSLLQRLVLPH------AVNYEKLVVWPGKYVWRLSIDVCVLRCDGCVLDAASM 183
Query: 108 AIKAALSNTGIPSVH 122
++ AL NT +P V
Sbjct: 184 GVREALQNTMLPVVQ 198
>gi|156096300|ref|XP_001614184.1| exosome complex exonuclease [Plasmodium vivax Sal-1]
gi|148803058|gb|EDL44457.1| exosome complex exonuclease, putative [Plasmodium vivax]
Length = 281
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 103/239 (43%), Gaps = 21/239 (8%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
+VI +K L PS PD+G + + +DC + R ++ +SS + L
Sbjct: 49 NNVICGIKLSLLTPSLDAPDEGVINLQIDCPASV---VANRIKKDHLQIMSSIIYDLCLK 105
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI----- 118
ID + ++ W + I+ +V+++ G LLD + AI AL +T +
Sbjct: 106 N------NIDRKKMCILPSTFVWGVDINVMVLNAGGGLLDIISMAIYVALKDTVVPVVKP 159
Query: 119 -----PSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEES 173
S +D Q V+I + + F VP+ ++ ++ Y+ D + EE
Sbjct: 160 KKKIDESNTFHHTKCADYQ--VEIVENQKTNFPYENVPICVSIGEINNKYVYDMSKVEEE 217
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA 232
+ + +++ G K G+ ++ + IL+M ++ +S L +K++ IA +
Sbjct: 218 LVENIFVVAVTSSGKCVAFHKLYGISMEIASILNMTENSSRISHHLFEKINEAIAKIET 276
>gi|403413602|emb|CCM00302.1| predicted protein [Fibroporia radiculosa]
Length = 283
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V+A V A + +P +P +G + I + SP A +E GR +E ++ L
Sbjct: 51 MGKTRVMAQVDARMVKPPPERPLEGIITIHSELSPMASNEYEVGRPSDE-EVTITRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +D SL V+ G+ W + + ++ GN+LD A AL + P
Sbjct: 110 VLRRSDV-----VDKESLCVLAGQRVWHIRLTIHCLADAGNMLDCACLAGIVALKHFRRP 164
Query: 120 SVHVAAEAASDEQP------EVDISDEEF-LQF----DTSGVPVITTLTKVGKHYIVDAT 168
V V + + P + + F L F D S +PV+ D +
Sbjct: 165 EVEVVGDEVTVHHPLERAPMPLSMHHTPFCLTFAYFPDPSTLPVL------------DPS 212
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
E+ + +S+++N Q +C + K GG+ L P IL ++++A +++L DK+
Sbjct: 213 HLEQRLSTGLLSVALNAQRELCVVQKAGGIPLTPEEILRIVNIAVEKAKEL-DKI 266
>gi|194766922|ref|XP_001965573.1| GF22565 [Drosophila ananassae]
gi|190619564|gb|EDV35088.1| GF22565 [Drosophila ananassae]
Length = 412
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 11/223 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V +++G P+ + ++GK+ + V+ A ++ L+S L+
Sbjct: 56 LGETKVLAQVSSDIGVPTTARANEGKLQLNVNIGGVAFLDEAQSTHDQRFLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL V + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRC-----LDLESLCVAAEQHVWCVRVDINVLNHDGNLYDASTIATLAALMHYRRPD 170
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V A DE + EF L F V V + K IVD +L EE+ S
Sbjct: 171 VTF----AEDELRIYTEKEREFQPLLFLHYPVSVTYCIYKSSSQPIVDPSLLEENAADSV 226
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
+ +S N +C + G + I+ A S+ L+D
Sbjct: 227 IVLSFNSYKELCTLNAGGSAPTNVRTIMQCARNAATRSKALVD 269
>gi|281206474|gb|EFA80660.1| hypothetical protein PPL_06243 [Polysphondylium pallidum PN500]
Length = 278
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 16/232 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPD----KGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA 56
+G+T VI V+AE+ Q K ++ + ++ P F E + L +
Sbjct: 52 IGNTSVICGVRAEIAEKQQDQTTSNTCKSQIIVNIEMGPICSNIFSSTKPSEKAMSLCTQ 111
Query: 57 LQHCLLGGKSGAGAGIDLSSLVV-VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
L + ID L V+GK W LY+D + +GN+LDA A+ +AL N
Sbjct: 112 LNQLV------QLLDIDPKQLYFDVDGKYLWYLYVDLYCLDYNGNILDAAIIAMLSALKN 165
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQM 175
+P V SD+ EV ++ + + + + ++ + D +LEEE
Sbjct: 166 VKLPKGVV-----SDDGSEVYKEEDTMRTLIINSYLIPLSFAVIDEYVLSDPSLEEEKLS 220
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ ++SI N + +C + G LD + + ++++ D +D I
Sbjct: 221 NGSISIVYNEKRELCLQLYSGITPLDEKTLQQCLDQTKQRTQEIKDLIDQSI 272
>gi|45184700|ref|NP_982418.1| AAL124Wp [Ashbya gossypii ATCC 10895]
gi|44980046|gb|AAS50242.1| AAL124Wp [Ashbya gossypii ATCC 10895]
gi|374105616|gb|AEY94527.1| FAAL124Wp [Ashbya gossypii FDAG1]
Length = 305
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 26/239 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T + + A++ +P +P +G I + SP A FE G E +S ++
Sbjct: 51 MGKTKIHCRISAQIAQPYEDRPFEGLFVISTEMSPMAGAQFENGNNTGEDEVLISRMIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ + +DL L ++ G CW + D + DG +DA A+ L + P
Sbjct: 111 AV-----RRSSAMDLEGLCIIAGSKCWAIRADVHFLDCDGGFIDASCIAVMTGLLHFRKP 165
Query: 120 SVHVAAEAASDEQPEVDISDE-EFLQFDTSGVPVITTLTKVGKH--------------YI 164
V V EQ V DE E + +PV T + I
Sbjct: 166 DVSVQG-----EQVIVHPVDEREPVALGILHIPVCVTFSFYNPEDAEVNVKGDSADEIAI 220
Query: 165 VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+DATL+EE +++++N+ + + K GG+ +D +++ A ++ ++ D++
Sbjct: 221 IDATLKEELLRDGVLTVTLNKNREVVQLSKAGGLPMDALSLMNCCHKAYTITEKITDQI 279
>gi|326435509|gb|EGD81079.1| hypothetical protein PTSG_11024 [Salpingoeca sp. ATCC 50818]
Length = 255
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 9/197 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K E P + G + V P F + LS +
Sbjct: 58 LGKTSVVCGIKLEFADPPLDNDNVGWIVPTVTLPPLCSDRFTPGPPPAEAQRLSEFITDI 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +D L ++ GK+ W LY+D ++ DGN++DA A AAL + +P
Sbjct: 118 FC-----SDTMLDKHDLCIIPGKLSWALYLDIQCVNYDGNVVDACVLAAMAALQSVTLPK 172
Query: 121 VHVAAEAASDE-QPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V + ++ + E P +D S L + V + V + D LEEE S+++
Sbjct: 173 VELPSDLSDLEGLPSIDRSAGHALNLKRT---VTSCTFAVLDDVLTDPCLEEEDLCSASM 229
Query: 180 SISINRQGHICGMIKRG 196
++ ++ G IC M G
Sbjct: 230 TVVVDDAGSICSMCSPG 246
>gi|195128659|ref|XP_002008779.1| GI11625 [Drosophila mojavensis]
gi|193920388|gb|EDW19255.1| GI11625 [Drosophila mojavensis]
Length = 417
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A V ++G PS+ + ++G + + VD A ++ L+S L+
Sbjct: 56 MGDTKVLAQVSCDIGTPSSARANEGTLYLNVDIKGVAFLDEIQSTHDQRFLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL + + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRC-----LDLESLCIAVEQHVWCVRVDINVLNHDGNLYDASTIAALAALMHFRRPE 170
Query: 121 VHVAAEA-ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V A E + + E ++ FL + V V L K + +VD TL EE+ S +
Sbjct: 171 VSYAEEKIHTFSERERELMPLLFLHY---PVSVTYCLYKSSSNPLVDPTLLEENAADSII 227
Query: 180 SISINRQGHICGM 192
+S N +C +
Sbjct: 228 VLSFNSYQELCTL 240
>gi|366996108|ref|XP_003677817.1| hypothetical protein NCAS_0H01580 [Naumovozyma castellii CBS 4309]
gi|342303687|emb|CCC71468.1| hypothetical protein NCAS_0H01580 [Naumovozyma castellii CBS 4309]
Length = 303
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 24/238 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T V + ++ +P +P +G I + SP A P FE G +E + ++
Sbjct: 51 MGDTRVHCRISCQISQPYEDRPFEGLFLISTENSPMAGPQFENGNNTDEDEILCARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D ++ DG +DA A+ A L + P
Sbjct: 111 AV--RRSGA---LDIEGLCIVAGSKCWAVRADVHFLNCDGGFIDASCIAVMAGLIHFKKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V E I + E +P+ T + ++
Sbjct: 166 DITVHGEQVIIHP----IEEREPTPLGILHIPICVTFSFFNPKETEENIKGESNEEITVI 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DATL+EE +++++N+ + + K GG+ +D ++ A ++ ++ D++
Sbjct: 222 DATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALSLMSCCHKAYSITEKVTDQI 279
>gi|405118209|gb|AFR92984.1| opa-interacting protein OIP2 [Cryptococcus neoformans var. grubii
H99]
Length = 272
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG T ++ VKAE+G P P +G + +D + P F+ G G+E + S+ L
Sbjct: 94 MGDTTMVCGVKAEIGEPDTETPGEGFIVPNIDLPALSSPKFKPGPPGDE-AQTYSNWLNE 152
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
L+ K+ I LSSL++ GK W LYID + I+ DGN D
Sbjct: 153 LLVSSKT-----IPLSSLLIAPGKAAWVLYIDVVCINYDGNAFD 191
>gi|413953850|gb|AFW86499.1| hypothetical protein ZEAMMB73_626410 [Zea mays]
Length = 448
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
+D+ L VV GK W +++D ++ GNL+DA A AALS P V D+
Sbjct: 20 VDMEFLCVVAGKHVWSVHVDLHILDDGGNLIDAANIAALAALSTFWRPECTVGG----DD 75
Query: 132 QPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYIV--DATLEEESQMSSAVSISINRQ 186
+V + D E L +P+ T G+ IV D T +EE+ M ++ +N
Sbjct: 76 GQQVTVHDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMAAIVNSN 135
Query: 187 GHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233
G +C + K GG GL SV + + +A+ + + K+ + D +
Sbjct: 136 GDVCAIQKAGGEGLMSSVTMQCLRIASVKAADITSKIKKAVLIWDVE 182
>gi|219129727|ref|XP_002185033.1| ribosomal RNA processing protein [Phaeodactylum tricornutum CCAP
1055/1]
gi|217403528|gb|EEC43480.1| ribosomal RNA processing protein [Phaeodactylum tricornutum CCAP
1055/1]
Length = 354
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGE-ELSAELSSALQHCL 61
S ++ SVKAE+ PSA+ P +G + + V+ ++ P + R + EL A LS L L
Sbjct: 79 SLHMLCSVKAEVVHPSALHPAQGAMELHVESLTSSGPNSQRRKTQDELEATLSKLLMRDL 138
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVI---SSDGNLLDALGAAIKAALSNTGI 118
+DL +L +V W L++D V+ SS G+L DA I+AAL T +
Sbjct: 139 ----------VDLEALCIVPYHYVWRLHVDLFVLTAGSSHGSLCDAASHVIRAALQCTRL 188
Query: 119 PSV 121
P++
Sbjct: 189 PAI 191
>gi|392559741|gb|EIW52925.1| ribosomal protein S5 domain 2-like protein [Trametes versicolor
FP-101664 SS1]
Length = 283
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 12/222 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++ +P +P +G + I + S A FE + ++ L
Sbjct: 51 LGKTRVLAQVDGKMVKPLPERPLEGIITIHSELSSMASNEFEPGRPSDQEVTITRMLDKV 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L +S A +D SL V+ G+ W + + V+S GN+LD A AL + P
Sbjct: 111 L--RRSDA---VDKESLCVLAGQRVWHIRLTIHVLSDAGNMLDCACLAGIVALKHFRRPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL---TKVGKHYIVDATLEEESQMSS 177
V V + + P S+ + P T + ++D + EE+ +
Sbjct: 166 VEVQGDEVTIHHP----SERAPVPLALHHAPFCFTFAFFSDTTTPPLLDPSHLEETLSAG 221
Query: 178 AVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
+S+++N Q +C + K GGV L P+ +L ++ VA +R+L
Sbjct: 222 LLSVALNAQRELCVVQKAGGVPLAPADVLAIMDVAVQKAREL 263
>gi|342321513|gb|EGU13446.1| Hypothetical Protein RTG_00162 [Rhodotorula glutinis ATCC 204091]
Length = 298
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V E+ P +P++G + VD SP P F + + LSS L+
Sbjct: 70 LGKTSVVCGVTLEIAPPDLARPNEGFIVPNVDLSPLCSPLFRPGPPPDEAQVLSSRLRDV 129
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL + LSSLV+ GK W +YID + ++ DG +LDA A AL N P
Sbjct: 130 LLSSNI-----LPLSSLVIEPGKAVWVVYIDVVCLNYDGGVLDAAVLAAVGALRNLRFPE 184
Query: 121 V-------HVAAEAASDEQPEVDIS 138
V E ++E P IS
Sbjct: 185 TTFDVDTSEVTCERVAEEHPGSRIS 209
>gi|399218325|emb|CCF75212.1| unnamed protein product [Babesia microti strain RI]
Length = 278
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
GST V+ +V E+ P +P +G V+ FE E + S ++H
Sbjct: 46 FGSTIVLCTVNGEVIPPVDSRPTEGFYHFHVEIGSLTTVGFEPGKPTEQEMFICSTIEHL 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L SG I+ SL +V GK W + +D LV+ GN LDA A+ A S
Sbjct: 106 L--RDSGT---IETESLCIVSGKYVWSIRVDMLVLEDAGNALDA--CALSAVASTMHFKR 158
Query: 121 VHVAAEAASDEQPEVD--ISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V + E +D E F+ +P+ T V ++D + EE +
Sbjct: 159 QQVKIDGEKIELLSLDHFTPGELFIH----HIPIFVTFAIVDDFIMIDPSTMEEMLADTL 214
Query: 179 VSISINRQGHICGMIKRGG 197
+S+++N+ IC + K GG
Sbjct: 215 ISVAVNQFEQICKIQKIGG 233
>gi|194694796|gb|ACF81482.1| unknown [Zea mays]
gi|414869689|tpg|DAA48246.1| TPA: hypothetical protein ZEAMMB73_220271 [Zea mays]
Length = 218
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 15/210 (7%)
Query: 33 CSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDG 92
CSP P GR +++ +S AL+ L + ++L L ++ GK W Y+D
Sbjct: 18 CSPLVRP---GRP-TDVAPVISKALEDVL-----TSSGMLNLKDLCLITGKASWLAYLDI 68
Query: 93 LVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEA------ASDEQPEVDISDEEFLQFD 146
+++DG+L DA + AA ++ IP V V + +D + + ++ + E +
Sbjct: 69 YCLNADGSLFDAALISAVAAFTHLEIPLVSVGDDGRLFTVGGNDGKNKFELVNREKRKLT 128
Query: 147 TSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVIL 206
+P+ T + D T EEES + + V++ ++ + + K GG + I
Sbjct: 129 LGAIPLSLTCALHKDEILADPTSEEESIIETYVTVVVDSSDRLVSLQKLGGAVTCMATIK 188
Query: 207 DMISVANFVSRQLMDKLDSEIAAADADEDE 236
+ IS+A R L + L I A + D+ E
Sbjct: 189 ECISLAKERRRSLREILLDSIKAMEVDQTE 218
>gi|391334104|ref|XP_003741448.1| PREDICTED: exosome complex component RRP45-like [Metaseiulus
occidentalis]
Length = 294
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 20/245 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A A + P +P++G++AI D SP A + R + E +
Sbjct: 52 LGDTKVLAQCSAHICEPKPTRPNEGRLAIQFDVSPVAASLQDSR-----TMEYRVGIGR- 105
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL +DL +L +V G+ W++ +D ++++ GN+ + A AAL++ P
Sbjct: 106 LLDRVIRDSECVDLENLCLVAGERAWEVRVDVVLMNLGGNVAECASIASVAALAHFKRPE 165
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI-VDATLEEESQMSSAV 179
V + + E +++ E + P + I VD + EEE+ +
Sbjct: 166 VTIVGK----EMTVHPVTEHEPVPLHIYHYPYCLSFAFFETETILVDPSFEEEACCDGIL 221
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVA--------NFVSRQLMDKLDSEIAAAD 231
+ +N +C + +RG V L I I +A + + RQL K ++I D
Sbjct: 222 IVGVNSHEEVCALQQRGSV-LTADQIELCIKLACSRAKLITDTIKRQLASKSGTDIDTID 280
Query: 232 ADEDE 236
+ D+
Sbjct: 281 PESDQ 285
>gi|260950159|ref|XP_002619376.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
gi|238846948|gb|EEQ36412.1| hypothetical protein CLUG_00535 [Clavispora lusitaniae ATCC 42720]
Length = 305
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 34/254 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + V E+G+P +P +G I + S A P FE + +S ++
Sbjct: 52 LGDTKLAVRVSCEIGKPFEDRPFEGTFTINTEISSMASPMFENGKNSDEEVLISRLIEKA 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +S A +DL SL V+ G+ W + D ++ DG L+DA + AL + P
Sbjct: 112 V--RRSNA---LDLESLCVIAGEKVWHIRADINFLNYDGGLIDASCIGVMTALQHFKKPD 166
Query: 121 VHVAAEAAS----DEQPEVDISDEEFLQFDTSGVPVITTLTKVG--------------KH 162
V + + DE+ V +S VP+ T + +
Sbjct: 167 VSIQGTDVTIYSFDERQPVPLS--------ILHVPICVTYSFFNPGDKEENIKGALNQEI 218
Query: 163 YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDK 222
I+DA +EE+ ++ I++N+ + + K GG+ +D +L + + V+ +L D+
Sbjct: 219 AIMDANSKEEAIRDGSLVITMNKNRELIQLSKNGGLPIDGVALLSLAQNSFAVAEKLTDQ 278
Query: 223 LDSEIAAADADEDE 236
+ A DE+E
Sbjct: 279 IK---ALLKEDEEE 289
>gi|449269974|gb|EMC80708.1| Exosome complex exonuclease RRP43, partial [Columba livia]
Length = 277
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 19/234 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAE---LSSA 56
+G+T VI VKAEL P+A +KG + V+ F G GEE A ++
Sbjct: 54 LGNTTVICGVKAELAAPAADSANKGYIVPNVELPSLCSTRFRSGPPGEEAQAASQFIADV 113
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+++ + K L + GK+ W LY D + + DGN+LDA A+ AAL N
Sbjct: 114 IENSQMIAKE---------DLCIASGKLAWVLYCDIICLDYDGNILDASAFALLAALKNV 164
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQM 175
+PSV + E EV++ + L PV T+ IVD T EEE
Sbjct: 165 QLPSVTINEETGLS---EVNLKQKNPLIIRKH--PVATSFAVFDDTLLIVDPTAEEEDLA 219
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
+ V+I + + +C + K GG L + + D I+ A +++ +D I +
Sbjct: 220 TGTVTIVTDDEDKLCSVHKPGGSPLTGAKLQDCITRAITRHKEVKKLIDKVIKS 273
>gi|66801297|ref|XP_629574.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
gi|60462952|gb|EAL61149.1| hypothetical protein DDB_G0292692 [Dictyostelium discoideum AX4]
Length = 293
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 31/211 (14%)
Query: 1 MGSTDVIASVKAELG-RPSAMQPDKGKVA---------IFVDCS--PTAEPTFEGRGGEE 48
+GST V+ V+AE+G +PS DK K + IF++ P TF +
Sbjct: 52 IGSTSVVCGVRAEVGEKPSI---DKSKFSTLNVHENKNIFINIELGPICSNTFSSSKPSD 108
Query: 49 LSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAA 108
++ L S L + L+ EGK W LY+D + DGN+ DA +
Sbjct: 109 IAMSLCSRL-NSLINRLEIPETDYYFDE----EGKALWYLYVDVYCLDYDGNIYDAAVLS 163
Query: 109 IKAALSNTGIPS--VHVAAEAASD-EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV 165
I +AL N +P + E D E P+ ++ + +L +P+ + + + + +
Sbjct: 164 IISALKNVKLPKGIIENNDEFYKDLESPQRKLNIQHYL------IPL--SFSVIDDYILA 215
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRG 196
D +L+EE S ++I+ N IC ++ G
Sbjct: 216 DPSLDEEKLSSGTINITYNELNEICLLLSSG 246
>gi|312374015|gb|EFR21670.1| hypothetical protein AND_16645 [Anopheles darlingi]
Length = 371
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 13/211 (6%)
Query: 29 IFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDL 88
+ V+ P A P F+G + S L+ L+ L SG +DL SL +V + W+L
Sbjct: 4 VNVELGPMAAPHFDGGRQSDESVHLNRILERAL--KDSGC---VDLESLCLVAEEKVWNL 58
Query: 89 YIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTS 148
ID V++ +GN++D A AL++ P + V E E ++E ++
Sbjct: 59 RIDVTVLNHEGNVIDCCSIAALTALAHFKRPDITVDGENVIVHTLE----EKEPIKVTLF 114
Query: 149 GVPVITT--LTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVIL 206
P+ + + G + D + EE + + IN G +CG+ GG+ L + +L
Sbjct: 115 HYPICVSYAIFNKGTVAVADPSYLEERVAEAMMVFGINSYGELCGL-HLGGITLTSADLL 173
Query: 207 DMISV-ANFVSRQLMDKLDSEIAAADADEDE 236
SV A+ +R L++K+ S IA AD ++
Sbjct: 174 LRTSVKASKRARMLVEKIKSAIAKDAADREK 204
>gi|390344472|ref|XP_003726131.1| PREDICTED: exosome complex exonuclease RRP42-like
[Strongylocentrotus purpuratus]
Length = 123
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 130 DEQPEVDISD--EEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQG 187
D ++D+S +F+ DT +PV+ T+T VG +IVDATLEEE+ + + ++N++G
Sbjct: 2 DGTEDIDVSSNPHDFVTLDTKNLPVLVTVTTVGSGHIVDATLEEEACSMACIVAAVNKEG 61
Query: 188 HICGMIKRGGVGLDPSVILDMISVANFVSR 217
I GM+K+G L I M++ A + +
Sbjct: 62 AIDGMVKKGSGSLTIDSIYKMLTSAKQIGK 91
>gi|339239765|ref|XP_003375808.1| exosome complex exonuclease RRP45 [Trichinella spiralis]
gi|316975514|gb|EFV58947.1| exosome complex exonuclease RRP45 [Trichinella spiralis]
Length = 448
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 12/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T V + PS +P G + I ++ P A +E G E E L+
Sbjct: 66 FGNTKVFVKTSCSVVTPSLTRPSSGILKINLEFGPQAVAHYEV-GRLEKCIEYQRLLERN 124
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + + L +L ++ G+ W + D V+++DG+L+D AI +AL + IPS
Sbjct: 125 IKDARC-----VCLDTLCIISGEKVWQIRCDVYVLNNDGSLVDCACVAILSALRHFRIPS 179
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL-TKVGKH-YIVDATLEEESQMSSA 178
V +D D+E L+ D P + TL GK +I + +L EE+ +
Sbjct: 180 V---TRHGTDYTIH-SFDDKEPLRLDIFHYPCMITLGYYSGKEIFICEPSLLEETVLDQC 235
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++N + S+IL S+ + +QL+D ++ EI
Sbjct: 236 FILAMNAHFEFTLIHHLKPQPYKDSLILRAKSIIHSRVKQLVDLINREI 284
>gi|410083339|ref|XP_003959247.1| hypothetical protein KAFR_0J00440 [Kazachstania africana CBS 2517]
gi|372465838|emb|CCF60112.1| hypothetical protein KAFR_0J00440 [Kazachstania africana CBS 2517]
Length = 306
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 32/246 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG---RGGEE--LSAELSS 55
MG T V + ++ +P +P +G I + +P A P FE G+E +S +
Sbjct: 51 MGETKVHVRISCQVTQPYEDRPFEGLFLISTESTPMAGPQFENGTNTSGDEVLISRIIEK 110
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
A++ +SGA +D+ L +V G CW + + ++ DG +DA A+ A L +
Sbjct: 111 AIR------RSGA---LDVEGLCIVAGSKCWAVRANVHFLNCDGGFIDASCIAVIAGLMH 161
Query: 116 TGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH------------- 162
P + V E P + + E + +P+ T +
Sbjct: 162 FKKPDITVHGEKVI-VHP---LDEREPVPLGILHIPICVTFSFFNPQDTEENIKGESNQE 217
Query: 163 -YIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
I+DATL+EE +++++N+ + + K GG+ +D +++ A + ++ D
Sbjct: 218 IAIIDATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALQLMECCHKAYSIIERITD 277
Query: 222 KLDSEI 227
++ ++I
Sbjct: 278 QIINQI 283
>gi|403214419|emb|CCK68920.1| hypothetical protein KNAG_0B04860 [Kazachstania naganishii CBS
8797]
Length = 307
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 28/245 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V + E+ P +P +G I + +P A FE G E ++ ++
Sbjct: 51 LGGTKVHCRISCEVTLPYEDRPFEGLFLISTEFTPMAGGQFENGNSTGEDEVLIARIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ AAL + P
Sbjct: 111 AV--RRSGA---LDVEGLCIVAGSKCWAIRADVHFLDCDGGFIDASCIAVMAALMHFKKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V + P + + E + VP+ T + +
Sbjct: 166 DITVQGHSVV-VHP---VEEREPVPLGILHVPICVTFSFFNPQDSETNFKGQDNLEIVVT 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
DATL+EE +++++N+ + + K GG+ +D ++D A ++ DK+ S
Sbjct: 222 DATLKEELLREGVLTVTLNKNREVVQVSKAGGLPMDALTLMDCCHKA----YEITDKVTS 277
Query: 226 EIAAA 230
+I AA
Sbjct: 278 QIIAA 282
>gi|195020434|ref|XP_001985193.1| GH14641 [Drosophila grimshawi]
gi|193898675|gb|EDV97541.1| GH14641 [Drosophila grimshawi]
Length = 415
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A V ++G PS+ + ++G + + VD A ++ L+S L+
Sbjct: 56 MGDTKVLAQVSCDIGTPSSARGNEGTLHLNVDIKGVAFLDEVQATHDQRQLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL + + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FRSSRC-----LDLESLCIATEQHVWCVRVDINVLNHDGNLYDASTIAALAALMHFRRPD 170
Query: 121 V-HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V + E + + E ++ FL + S V + K +VD TL EE+ S +
Sbjct: 171 VSFIEDEIRTYSERERELMPLLFLHYPVS---VTYCVYKSSTQPLVDPTLLEENAADSII 227
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQ 218
+S N +C + G P+ + ++ A+ +R+
Sbjct: 228 VLSFNSYQELCTL---NAGGTAPTNVRTIMQCAHGAARR 263
>gi|225710860|gb|ACO11276.1| Exosome complex exonuclease RRP45 [Caligus rogercresseyi]
Length = 364
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 104/233 (44%), Gaps = 25/233 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+AS +G P +++P++G + + EP + E EL+ ++
Sbjct: 47 LGDTRVLASTSCSVGEPRSVRPNEGILKTHI------EPLSKRSISTETLVELNRVIERV 100
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D+ SL + + W + ++ +++ GN D A AAL + P
Sbjct: 101 LKESKC-----VDMESLCISSEEKVWIISLEMTLLNDAGNAADCASIAGLAALCHFKRPD 155
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGV-----PVITTLTKVGKHYIVDATLEEESQM 175
V + + I F + D + PV++T G+ ++D + EEE M
Sbjct: 156 VTLKGDK---------IRIHPFYERDPVSLAIHHHPVLSTFALYGRVALLDPSKEEEIVM 206
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
V + +N IC + G +D +++L + S A S++++D+L + ++
Sbjct: 207 DGKVVLGMNPYREICALHLAGQKLVDKTLVLQLASKAAEESKRIVDQLKNALS 259
>gi|148703132|gb|EDL35079.1| exosome component 9, isoform CRA_b [Mus musculus]
Length = 353
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 37 AEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVIS 96
A P FE +L +L+ L+ CL K ID SL VV G+ W + +D +++
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLLERCLRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLN 56
Query: 97 SDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
DGN++DA A AL + P V V E + PE + + + +P+ +
Sbjct: 57 HDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE----ERDPVPLSIHHMPICVSF 112
Query: 157 T--KVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGL 200
+ G + +VD EE M + I++N+ IC + GG+ L
Sbjct: 113 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 158
>gi|307111676|gb|EFN59910.1| hypothetical protein CHLNCDRAFT_132943 [Chlorella variabilis]
Length = 301
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 111/253 (43%), Gaps = 47/253 (18%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEP-TFEGRGGEE---LSAELSSA 56
+GST +A +K E+ SA P++G++A+ V+ +P T GR E L+ +LSS
Sbjct: 46 VGSTAALAGIKCEVMPASADTPEEGRLALQVELAPLCSADTRPGRPSEAAAVLTEQLSSL 105
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L+ GAG +D L + GK W +Y+D V+ +DG+L DA A+ AALS+
Sbjct: 106 LE--------GAGV-VDRRQLCIDPGKAAWAVYVDVYVLDADGSLHDACLLAVLAALSSL 156
Query: 117 GIPSVHV-----------------------------AAEAASDEQPEVDISDEEFLQFDT 147
+ +V V A A +QP+ L
Sbjct: 157 RLHAVAVDDTGRIQKAPADAAAAGAAGAQRQQGAADGAATALQQQPQGHQRRPLLLACH- 215
Query: 148 SGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVIL 206
PV T +VD T EEE + +A++ +++ G I G K GG L +L
Sbjct: 216 ---PVSLTCGLYRDRLLVDPTAEEEPLLEAAMTTTVDESGDILGFYKAGGSATLSRERML 272
Query: 207 DMISVANFVSRQL 219
+ I A SR++
Sbjct: 273 ECIEAAKQRSREV 285
>gi|149048738|gb|EDM01279.1| exosome component 9, isoform CRA_a [Rattus norvegicus]
Length = 353
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 37 AEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVIS 96
A P FE +L +L+ L+ CL K ID SL VV G+ W + +D +++
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLLERCLRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLN 56
Query: 97 SDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
DGN++DA A AL + P V V E + PE + + + +P+ +
Sbjct: 57 HDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPE----ERDPVPLSIHHMPICVSF 112
Query: 157 T--KVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGL 200
+ G + +VD EE M + I++N+ IC + GG+ L
Sbjct: 113 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 158
>gi|240849627|ref|NP_001155833.1| 3 exoribonuclease-like [Acyrthosiphon pisum]
gi|239791374|dbj|BAH72161.1| ACYPI010191 [Acyrthosiphon pisum]
Length = 400
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 29/234 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V A V E+ +P+ +P++G + I +AE G+ +L+ Q
Sbjct: 50 LGCTRVFAQVSCEIYQPNNSRPNEGVLQI------SAE-----LAGDNKINDLTKINQ-- 96
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+L IDL +L ++ + W + +D V++ DGN L A AAL + P
Sbjct: 97 VLERFYKDSKCIDLEALCIIAEEKVWKIKVDLSVLNMDGNTLGCCSIATLAALMHFRYPD 156
Query: 121 V-----HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--YIVDATLEEES 173
V V ++S+ P + PVI + K+ I+D +L E+
Sbjct: 157 VVSTGEKVVVYSSSERDP---------IPLSLHHHPVIASFAIFEKYDFIILDPSLLEDK 207
Query: 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ +SI N +CG+ G L +++++ + A V+ +L+DK+ S I
Sbjct: 208 VCDNKLSICFNNHSEMCGVDIEGCASLSQNLLMNCSNQAASVAIKLVDKIKSAI 261
>gi|221484017|gb|EEE22321.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
gi|221505289|gb|EEE30943.1| exosome complex exonuclease, putative [Toxoplasma gondii VEG]
Length = 291
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 25/131 (19%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAE----------PTF---EGRGGEELSAE 52
V+ V +L RP+A PD+G+V + VDCS +F EG L A
Sbjct: 92 VLCGVSMQLARPTA-APDEGEVFLTVDCSAALGVGGVGGGVALESFGLGEGSSNSSLQAL 150
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAA 112
LS + + +D L +V GK+ W +++D +V+ + G LLDA+ A+ AA
Sbjct: 151 LSDMVL-----------SAVDKKKLCLVPGKLIWRVFVDCMVLKAGGCLLDAVSLAVHAA 199
Query: 113 LSNTGIPSVHV 123
L T +P V V
Sbjct: 200 LRTTVLPCVFV 210
>gi|237836521|ref|XP_002367558.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211965222|gb|EEB00418.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
Length = 297
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 25/131 (19%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAE----------PTF---EGRGGEELSAE 52
V+ V +L RP+A PD+G+V + VDCS +F EG L A
Sbjct: 98 VLCGVSMQLARPTA-APDEGEVFLTVDCSAALGVGGVGGGVALESFGLGEGSSNSSLQAL 156
Query: 53 LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAA 112
LS + + +D L +V GK+ W +++D +V+ + G LLDA+ A+ AA
Sbjct: 157 LSDMVL-----------SAVDKKKLCLVPGKLIWRVFVDCMVLKAGGCLLDAVSLAVHAA 205
Query: 113 LSNTGIPSVHV 123
L T +P V V
Sbjct: 206 LRTTVLPCVFV 216
>gi|126459545|ref|YP_001055823.1| exosome complex RNA-binding protein Rrp42 [Pyrobaculum calidifontis
JCM 11548]
gi|126249266|gb|ABO08357.1| ribosomal RNA-processing protein RRP42 [Pyrobaculum calidifontis
JCM 11548]
Length = 274
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 18/190 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVVAGVKIGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L+HC +D L V EG + L++D VI+ DGNL+DA A AAL N
Sbjct: 119 LRHC---------GYVDFKKLSV-EGGKAYVLWVDLYVINDDGNLVDAANLAAVAALKNA 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P+V V E + ++D + + D P+ ++ K+ +D EEE +
Sbjct: 169 ALPAV-VKDETGA---VKLDRNSRTPMPLDLEKAPIAVSVGKIANVLFLDPIFEEELSLD 224
Query: 177 SAVSISINRQ 186
++ + ++
Sbjct: 225 GRITYTFAQE 234
>gi|58264608|ref|XP_569460.1| exosome complex exonuclease rrp45 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134109839|ref|XP_776469.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259145|gb|EAL21822.1| hypothetical protein CNBC5230 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57225692|gb|AAW42153.1| exosome complex exonuclease rrp45, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 281
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 12/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T ++A V A + +P +P +G + I + P A +E GR G++ +
Sbjct: 51 LGKTAILAQVSATIVKPRDDRPYEGFLLINSEIGPMASSVYENGRPGDD------EVMIG 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL ID +L ++ G+ W L + +S GNLLD A AAL + P
Sbjct: 105 RLLEKSIRRTEAIDREALCILAGEKVWQLRLTLHFLSDSGNLLDCAALAGMAALKHFRKP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK-HYIVDATLEEESQMSSA 178
V V + PE + + P+ T I+D + E S
Sbjct: 165 DVEVIGDEVIIHSPE----ERAPVPLAIHHTPLCLTFAYFENLPPILDPSHVEMMLCSGT 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++++N Q IC + K GG L I+ ++ V R+L+ L+ E+
Sbjct: 221 LTLTLNAQREICVLSKAGGAPLGAEEIMGVVKVGVDKVRELVRHLEEEL 269
>gi|349805879|gb|AEQ18412.1| hypothetical protein [Hymenochirus curtipes]
Length = 111
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAEL 53
+G TDV+ VKAE+G P +P +G + FVDCS A P FEGR GEEL E+
Sbjct: 53 IGHTDVLVGVKAEMGTPKLERPGEGYLEFFVDCSANATPEFEGR-GEELGTEI 104
>gi|225713980|gb|ACO12836.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
Length = 363
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 101/232 (43%), Gaps = 25/232 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+AS +G P + +P++G + I + EP + E EL+ ++
Sbjct: 47 LGETRVLASTSCSVGEPQSSRPNEGVLKIRM------EPLAKRSMTTEALVELNRVIERV 100
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D+ SL + + W + ++ +++ GN D A AAL + P
Sbjct: 101 LKQSKC-----LDMESLCISSEEKVWIISLEMTILNDAGNAADCASVAGLAALCHFKRPD 155
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGV-----PVITTLTKVGKHYIVDATLEEESQM 175
V + + I F + D + PV++T G+ + D + +EE M
Sbjct: 156 VTLKGDK---------IRIHPFYERDPVSLAVHHHPVLSTFALYGRVALSDPSRDEEVVM 206
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
V + +N IC + G +D ++L + S A ++ +++KL +E+
Sbjct: 207 DGKVVLGMNPYREICALHLAGQKLVDKRLVLQLASKAAEYAKNIVNKLKNEL 258
>gi|195379528|ref|XP_002048530.1| GJ11305 [Drosophila virilis]
gi|194155688|gb|EDW70872.1| GJ11305 [Drosophila virilis]
Length = 423
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A V ++G PS+ + ++G + + VD A ++ L+S L+
Sbjct: 56 IGETKVLAQVSCDIGTPSSARANEGTLFLNVDIKGVAFLDEAQATHDQRFLTLNSLLERT 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL SL + + W + +D V++ DGNL DA A AAL + P
Sbjct: 116 FKSSRC-----LDLESLCIAVEQSVWCVRVDINVLNHDGNLYDASTIAALAALMHFRRPE 170
Query: 121 V-HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V +V E + + E ++ FL + S V + K +VD TL EE+ S +
Sbjct: 171 VSYVEEEIRTFSERERELLPLLFLHYPVS---VTYCVYKSSSQPLVDPTLLEENAADSVI 227
Query: 180 SISINRQGHICGM 192
+S N +C +
Sbjct: 228 VLSFNSYQELCTL 240
>gi|344234677|gb|EGV66545.1| ribosomal protein S5 domain 2-like protein [Candida tenuis ATCC
10573]
Length = 301
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 114/252 (45%), Gaps = 34/252 (13%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T V+ +E+ +P +P++G + I + SP A F+ R +E+ ++ ++ +
Sbjct: 50 GQTKVVIKTSSEIVKPFEDRPNEGLLVINNELSPMASIKFDERSVDEVM--INRIIEKSI 107
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA-----LGAAIKAALSNT 116
KS A +DL L + G+ W + +D +I+ DGNL+D+ + + I L N
Sbjct: 108 --RKSNA---LDLEGLCIKTGEKVWLIRVDLSIINFDGNLIDSCCFGSIISLIHFKLPNY 162
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT-----------KVGKHY-- 163
+ + DE+P + +S +P+ +++ K +Y
Sbjct: 163 SLDTNGNIKVYNLDEKPPISLS--------VLHIPITLSISFFNPLNDEENLKSNNNYEI 214
Query: 164 -IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDK 222
+ DAT++EE S + +S+N + + K GG+ +D ++++ + +L +
Sbjct: 215 SVFDATMKEELVRDSYLVVSVNSNKELIQLTKLGGIPIDSVELVNLCQRCYAYAEELTEL 274
Query: 223 LDSEIAAADADE 234
+ + + + +E
Sbjct: 275 IKTTVKRKEEEE 286
>gi|403220409|dbj|BAM38542.1| exosome complex exonuclease [Theileria orientalis strain Shintoku]
Length = 296
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 13/205 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T V + E+ P+ +P++G + V+ SP ++ + L L++
Sbjct: 60 FGNTVVFCCISQEIVEPNFERPNEGFLYFNVELSPFTSENYDPGKTSDSENNLIYFLENI 119
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL +L V GK W L + V+ DGNLL A A A+LS P+
Sbjct: 120 F-----KESSFLDLETLCVKSGKEVWALRVYVHVLQDDGNLLGACSFAALASLSQYRKPN 174
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSA 178
+ + E + + + +P++ T++ + Y++DA EE +++
Sbjct: 175 LQESEEFTYSSY----MLWHKGVPLSIYNMPIMMTVSIMEGQDQYVLDANAFEEKILNTQ 230
Query: 179 VSISINRQGHICGMIKRGG--VGLD 201
+SI N+ G + K G VGL+
Sbjct: 231 ISILYNQFGEVFWTYKYGSTPVGLE 255
>gi|392588434|gb|EIW77766.1| ribosomal protein S5 domain 2-like protein [Coniophora puteana
RWD-64-598 SS2]
Length = 342
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 46/211 (21%)
Query: 2 GSTDVIASVKAELGRPSAMQPD-------KGKVAIFVDCSPTAEPTFEGRGGEELSAELS 54
G T+V+A++K E+ S D +G++ V CSP A P ++L +L+
Sbjct: 61 GGTEVVAAIKLEVEDASDRDEDGVDEAEVEGRIIGAVSCSPAAYPHLSSNAVDDLQHDLT 120
Query: 55 SALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALS 114
+ L L A + +L +V GK W +++D +V S GN+ DA+ A +AAL
Sbjct: 121 AVLHSVL------AHPTLRPKNLTIVPGKKAWAVHLDVVVYSDAGNVCDAIFMAARAALW 174
Query: 115 NTGIPSVHVAAEAA-------SDEQPEVD------------------ISDEEFLQFDTSG 149
+T +P A D+ EVD +D E + G
Sbjct: 175 DTKVPKTRSVEYRALGRKGDREDDAMEVDDGVQKSGLDTRTKRSVSTKADFELTDYWDEG 234
Query: 150 --------VPVITTLTKVGKHYIVDATLEEE 172
PV TL + + +DATL+EE
Sbjct: 235 ESLDGREAWPVCVTLNILPSVHFLDATLKEE 265
>gi|258574161|ref|XP_002541262.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901528|gb|EEP75929.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 282
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 32/216 (14%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
VI + AE+ P + G + ++ + A P FE + +LS L + +
Sbjct: 46 VIVRISAEVTAPRPERESDGIFTVSIELNDMAIPGFETGRQSDSETQLSRTLDKIV--RR 103
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
S A +D SL + +G CW++ D ++ +DG L+D AI AAL + +P V
Sbjct: 104 SNA---LDTESLCIAKGLSCWNVRADVHIVDADGGLVDICCLAIMAALLHFRLPESTV-- 158
Query: 126 EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-----------GKHYIVDATLEEESQ 174
D + V ++E+ VPV LTKV GK ++DAT EE+
Sbjct: 159 ---RDGKVTVYSAEEK--------VPVPLNLTKVPLSVTFNLYDEGKTTLLDATSSEEAV 207
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMIS 210
++ I++++ G I K G DP L+M++
Sbjct: 208 SEGSLIIALDKTGEIALYSKADGTPADP---LNMVA 240
>gi|313236011|emb|CBY11338.1| unnamed protein product [Oikopleura dioica]
Length = 271
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 20/204 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T VI + AE +P+A P G ++ + CSP A+ + +S L
Sbjct: 59 LGNTKVICGITAETIKPAAATPKDGSFSVNFEFSSVCSPNAKAGPPNEVAQTMSIFLDGI 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L+ + + L + + W L+ID + DGN+ DA ++ ++L +
Sbjct: 119 LKQVF-----------ETNQLCIEPDLLAWTLFIDVYCLEDDGNVTDAAMMSVISSLRDL 167
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P + + E A +P V++ + D PV TT + ++D T E S
Sbjct: 168 KLPEITIDEETA---KPVVNLEKQS--PVDLKMFPVSTTYGEFSGILLLDPTARETELGS 222
Query: 177 SAVSISINRQGHICGMIKRGGVGL 200
S +++ + +G + + GG L
Sbjct: 223 SPITVVCSEKGALLCFNRSGGSPL 246
>gi|323334135|gb|EGA75519.1| Rrp45p [Saccharomyces cerevisiae AWRI796]
Length = 255
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 100/238 (42%), Gaps = 24/238 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 1 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 60
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 61 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 115
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V E +++ E + +P+ T + I+
Sbjct: 116 DITVHGEQIIVHP----VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISII 171
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DATL+EE +++++N+ + + K GG+ +D ++ A + ++ D++
Sbjct: 172 DATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 229
>gi|365766354|gb|EHN07852.1| Rrp45p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 305
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 24/238 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V E P +++ E + +P+ T + I+
Sbjct: 166 DITVXGEQII-VHP---VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISII 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DATL+EE +++++N+ + + K GG+ +D ++ A + ++ D++
Sbjct: 222 DATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 279
>gi|70948509|ref|XP_743754.1| exosome complex exonuclease [Plasmodium chabaudi chabaudi]
gi|56523406|emb|CAH76566.1| exosome complex exonuclease, putative [Plasmodium chabaudi
chabaudi]
Length = 434
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 12/150 (8%)
Query: 68 AGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEA 127
A ++ SL ++ K W L I+ VI +DGNL D+ + +AL VH +
Sbjct: 37 ASNILNFESLCIIPYKKVWCLLINITVIENDGNLYDSCYLSAYSAL-------VHFRNNS 89
Query: 128 ASDEQPEVDISDEEFLQFDTSGV---PVITTLTKVGKHYI--VDATLEEESQMSSAVSIS 182
+ + I DEE + + + V P++TT I +D + EE MSS +SI+
Sbjct: 90 VNIDNAGNVIIDEEEVNYSSLSVHNSPILTTFAYFNFEEICLIDPSSYEEEFMSSKLSIA 149
Query: 183 INRQGHICGMIKRGGVGLDPSVILDMISVA 212
IN+ G++ ++K GG+ + IL I +A
Sbjct: 150 INKNGNLISILKPGGLPISYDKILHGIELA 179
>gi|323338208|gb|EGA79441.1| Rrp45p [Saccharomyces cerevisiae Vin13]
Length = 305
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 24/238 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V E P +++ E + +P+ T + I+
Sbjct: 166 DITVHGEQII-VHP---VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISII 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DATL+EE +++++N+ + + K GG+ +D ++ A + ++ D++
Sbjct: 222 DATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 279
>gi|390594716|gb|EIN04125.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 343
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 2 GSTDVIASVKAEL---GRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQ 58
G T+V+A+VK E+ G+ + D G++ V C P+A P +ELSA+LS AL
Sbjct: 59 GGTEVLAAVKLEVEDVGKDDGV--DGGRLNCSVTCLPSAYPHLAPTALDELSADLS-ALL 115
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
H L S + S+L ++ K W ++D ++ S GN LDAL A +AAL +T +
Sbjct: 116 HTTLAHPS-----LLPSNLTIIPNKKSWVAHLDCVLRSDGGNALDALFVAARAALWDTKV 170
Query: 119 PSVH 122
P
Sbjct: 171 PRTR 174
>gi|448262633|pdb|4IFD|A Chain A, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 304
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 24/238 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 50 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 110 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V E P +++ E + +P+ T + I+
Sbjct: 165 DITVHGEQII-VHP---VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISII 220
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DATL+EE +++++N+ + + K GG+ +D ++ A + ++ D++
Sbjct: 221 DATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 278
>gi|6320486|ref|NP_010566.1| Rrp45p [Saccharomyces cerevisiae S288c]
gi|14285753|sp|Q05636.1|RRP45_YEAST RecName: Full=Exosome complex component RRP45; AltName:
Full=Ribosomal RNA-processing protein 45
gi|266618484|pdb|2WP8|A Chain A, Yeast Rrp44 Nuclease
gi|1230649|gb|AAB64446.1| Ydr280wp [Saccharomyces cerevisiae]
gi|45269387|gb|AAS56074.1| YDR280W [Saccharomyces cerevisiae]
gi|151942253|gb|EDN60609.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|190404776|gb|EDV08043.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
gi|256270394|gb|EEU05592.1| Rrp45p [Saccharomyces cerevisiae JAY291]
gi|259145518|emb|CAY78782.1| Rrp45p [Saccharomyces cerevisiae EC1118]
gi|285811296|tpg|DAA12120.1| TPA: Rrp45p [Saccharomyces cerevisiae S288c]
gi|323309622|gb|EGA62830.1| Rrp45p [Saccharomyces cerevisiae FostersO]
gi|323349166|gb|EGA83396.1| Rrp45p [Saccharomyces cerevisiae Lalvin QA23]
gi|349577332|dbj|GAA22501.1| K7_Rrp45p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300393|gb|EIW11484.1| Rrp45p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 305
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 24/238 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V E P +++ E + +P+ T + I+
Sbjct: 166 DITVHGEQII-VHP---VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISII 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DATL+EE +++++N+ + + K GG+ +D ++ A + ++ D++
Sbjct: 222 DATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 279
>gi|167392472|ref|XP_001740171.1| exosome complex exonuclease RRP45 [Entamoeba dispar SAW760]
gi|165895849|gb|EDR23438.1| exosome complex exonuclease RRP45, putative [Entamoeba dispar
SAW760]
Length = 244
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 14/199 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTF-EGRGGEELSAELSSALQH 59
+G++ + E P +PD+G I V+ A P F + RG +L E+ ++
Sbjct: 39 IGNSKALGECVVEPVSPGRSRPDQGIFNIRVNFLEMANPNFYDSRGPRDL-IEIGKVVER 97
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL ++ ID+ LV++ GK+ W + + +I+ GNL+D + +AL
Sbjct: 98 GLLSTRA-----IDVDGLVIIRGKLVWKITVCVHIINDCGNLMDLVSITAISALLTAVRR 152
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSS 177
V + PE + + + +P+ + +T G ++D + EES S
Sbjct: 153 EVQICGTDVKILTPE----ERKPVPLAIHHIPITVSFGITDSGVP-LLDPSEREESVCKS 207
Query: 178 AVSISINRQGHICGMIKRG 196
++I+IN++G +C + K G
Sbjct: 208 RLTIAINKEGEVCAVQKSG 226
>gi|313236007|emb|CBY11334.1| unnamed protein product [Oikopleura dioica]
Length = 271
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 20/204 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T VI + AE +P+A P G ++ + CSP A+ + +S L
Sbjct: 59 LGNTKVICGITAETIKPAAATPKDGSFSVNFEFSSVCSPNAKAGPPNEVAQTMSIFLDGI 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L+ + L + + W L+ID + DGN+ DA ++ ++L +
Sbjct: 119 LKQVFQTNQ-----------LCIEPDLLAWTLFIDVYCLEDDGNVTDAAMMSVISSLRDL 167
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P + + E A +P V++ + D PV TT + ++D T E S
Sbjct: 168 KLPEITIDEETA---KPLVNLEKQS--PVDLKMFPVSTTYGEFSGILLLDPTARETELGS 222
Query: 177 SAVSISINRQGHICGMIKRGGVGL 200
S +++ + +G + + GG L
Sbjct: 223 SPITVVCSEKGALLCFNRSGGSPL 246
>gi|179287|gb|AAA58384.1| autoantigen [Homo sapiens]
gi|63992811|gb|AAY40968.1| unknown [Homo sapiens]
Length = 355
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 37 AEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVIS 96
A P FE +L +L+ ++ CL K ID SL VV G+ W + +D +++
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLMERCLRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLN 56
Query: 97 SDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
DGN++DA A AL + P V V + + PE + + + +P+ +
Sbjct: 57 HDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSF 112
Query: 157 T--KVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGL 200
+ G + +VD EE M + I++N+ IC + GG+ L
Sbjct: 113 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 158
>gi|358057917|dbj|GAA96162.1| hypothetical protein E5Q_02823 [Mixia osmundae IAM 14324]
Length = 292
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 102/250 (40%), Gaps = 47/250 (18%)
Query: 29 IFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGG--KSGAGAGIDLSSLVVVEGKVCW 86
I VDCSP A + L + +++AL+ G K L+++ GK W
Sbjct: 33 IDVDCSPMALQALDHDPTGGLVSFIATALKSHFFGASPKKSTTRRRVRDQLIILPGKRRW 92
Query: 87 DLYIDGLVI-SSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQP------------ 133
L ID +V+ +S GNL D A++AAL + IP A +P
Sbjct: 93 SLAIDVIVLGASGGNLYDVAFMAVRAALWDLRIPRTRSTALLNQRRKPGEDGEQPGSSVA 152
Query: 134 -----------------------------EVDISDEEFL--QFD-TSGVPVITTLTKVGK 161
+ ++ D E L Q D +PV TL + +
Sbjct: 153 QPGGDMSAFLKGTADGIRKKNLKTAGRVVDFELDDSESLGDQLDERDQLPVCVTLNLIHQ 212
Query: 162 HYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMD 221
+DATL EES S + ++ + ++C M L+ + + D++ A+ V+ ++
Sbjct: 213 EPFLDATLHEESASQSRLIVAFDGADNVCSMRLERCQELELTRLRDLLKTAHGVATEMRL 272
Query: 222 KLDSEIAAAD 231
L++ +A+AD
Sbjct: 273 SLNARMASAD 282
>gi|67474914|ref|XP_653189.1| exosome complex exonuclease [Entamoeba histolytica HM-1:IMSS]
gi|56470120|gb|EAL47803.1| exosome complex exonuclease, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407042424|gb|EKE41318.1| exosome complex exonuclease, putative [Entamoeba nuttalli P19]
gi|449703501|gb|EMD43942.1| exosome complex exonuclease, putative [Entamoeba histolytica KU27]
Length = 265
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 14/199 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTF-EGRGGEELSAELSSALQH 59
+G++ + E P +PD+G I V+ A P F + RG +L E+ ++
Sbjct: 39 IGNSKALGECVVEPVCPGRSRPDQGIFNIRVNFLEMANPNFYDSRGPRDL-IEIGKVVER 97
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL ++ ID+ LV++ GK+ W + + +I+ GNL+D + +AL
Sbjct: 98 GLLSTRA-----IDVDGLVIIRGKLVWKITVCVHIINDCGNLMDLVSITAISALLTAVRR 152
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEESQMSS 177
V + PE + + + +P+ + +T+ G ++D + EES S
Sbjct: 153 EVQICGTDVKILTPE----ERKPVPLAIHHIPITVSFGITESGV-PLLDPSEREESVCKS 207
Query: 178 AVSISINRQGHICGMIKRG 196
++I+IN++G +C + K G
Sbjct: 208 HLTIAINKEGEVCAVQKSG 226
>gi|242088451|ref|XP_002440058.1| hypothetical protein SORBIDRAFT_09g025240 [Sorghum bicolor]
gi|241945343|gb|EES18488.1| hypothetical protein SORBIDRAFT_09g025240 [Sorghum bicolor]
Length = 325
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 159 VGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGV 198
+G+HYI+DAT EEESQMSSAV +S+NR ICG + G V
Sbjct: 1 MGQHYIIDATSEEESQMSSAVLVSVNRHDQICGAYQEGSV 40
>gi|343426851|emb|CBQ70379.1| probable RRP45-Exosome complex exonuclease [Sporisorium reilianum
SRZ2]
Length = 316
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 37/255 (14%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGG-EELSAELSSALQHCLL 62
T V SVKA L P + +P +G + I D SP A ++ GG SA L L+
Sbjct: 56 TRVSTSVKATLIPPRSDRPYEGFLQITTDISPMAGIEYDTTGGGANSSARAREVLFERLI 115
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP--- 119
+D +L VV G+ W++++ ++S G LDA +L + P
Sbjct: 116 EKAVRRTEAVDREALCVVAGEQVWNVHLSVHLLSDTGAALDAAVLCSMLSLRHFRRPDYA 175
Query: 120 -----SVHVAAEAASDEQPEVDISDEE------FLQFDTSGVPVITTLTKVGKHYIVDA- 167
VH+ ++DE+ V ++ F F+ +P ++ TK K ++D
Sbjct: 176 IDNGTHVHL---FSTDERVPVPLAIHHTPLCVTFAIFN--NLPAASS-TKTDKDSLIDPS 229
Query: 168 ---------------TLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
TL EES +S +++ +N Q IC + K G + P ++LD+I V
Sbjct: 230 SSSFAPASTAALLDPTLLEESLATSKLTLVLNAQREICVLDKSYGSPIQPQLLLDLIQVG 289
Query: 213 NFVSRQLMDKLDSEI 227
+QL L+ +
Sbjct: 290 LNRVQQLTQTLEQAL 304
>gi|397495404|ref|XP_003818546.1| PREDICTED: exosome complex component RRP42-like, partial [Pan
paniscus]
Length = 137
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 114 SNTGIPSVHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEE 171
S + IP V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+E
Sbjct: 7 SASRIPRVRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIITLCKIGYRHVVDATLQE 64
Query: 172 ESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
E+ +++ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 65 EACSLASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 118
>gi|365761400|gb|EHN03058.1| Rrp45p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401838753|gb|EJT42221.1| RRP45-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 305
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 24/238 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ L + P
Sbjct: 111 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVITGLMHFKKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V E P I++ E + +P+ T + I+
Sbjct: 166 DITVHGEQII-VHP---INEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISII 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DATL+EE +++++N+ + + K GG+ +D +++ A + ++ D++
Sbjct: 222 DATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALMLMRCCHEAYAIIEKITDQI 279
>gi|150865099|ref|XP_001384176.2| hypothetical protein PICST_59559 [Scheffersomyces stipitis CBS
6054]
gi|149386355|gb|ABN66147.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 307
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 106/238 (44%), Gaps = 29/238 (12%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T + V A++G+P +P +G I + S A F+ ++ ++ +
Sbjct: 53 GLTKLAVRVSAQIGKPYEDRPFEGLFQINCEISSMAWAHFDNSKNSNEEILIARIIEKAI 112
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDA--LGAAIKAALSNTGIP 119
S +DL +L ++ G+ W++ +D ++ DGN +D GA + AL + P
Sbjct: 113 RRSNS-----LDLEALCIIAGEKVWNITVDLNFLNFDGNFVDVGCFGAML--ALHHFKKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG--------------KHYIV 165
+ + ++ DI + + + VP+ T + + Y++
Sbjct: 166 DISIVN--GGEDIIVHDIDERQPVPLSILHVPICLTYSFYNPGNKESNLKGEDDDEIYLL 223
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DA L EE ++ +++N+ + + K GG+ + +V+LD+ +F S +++D+L
Sbjct: 224 DANLIEEQVREGSIVVTLNKNRELIQLSKNGGIPISANVLLDL----SFKSMKIVDEL 277
>gi|198426220|ref|XP_002120565.1| PREDICTED: similar to Exosome complex exonuclease RRP43 (Ribosomal
RNA-processing protein 43) (Exosome component 8) (p9)
(Opa-interacting protein 2) [Ciona intestinalis]
Length = 279
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 19/205 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T V+ VKAEL +P+A +P KG + +D CS +P G A++ +
Sbjct: 53 IGNTMVMCGVKAELTQPTAEEPKKGIIVPNLDLPALCSSKFKP-----GPPNTQAQVGTK 107
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L ++ L +V K+ W LY D ++ DG ++DA A+ AAL +
Sbjct: 108 F----LDNLIKIANLVNSEDLCIVPDKLVWVLYCDVTCLNYDGCVIDAAVVALVAALRSV 163
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQM 175
+PSV + E + P +I+++ L + +PV ++ + +H I D TL EE
Sbjct: 164 SLPSVTLNEET---DTPVTNINEKTPLTINC--LPVASSFSFFESEHIITDPTLSEEDIT 218
Query: 176 SSAVSISINRQGHICGMIKRGGVGL 200
S +++ + ++ + + GGV +
Sbjct: 219 SGCLTVVSDEHENLLLVDRPGGVSI 243
>gi|321253395|ref|XP_003192721.1| exosome complex exonuclease rrp45 [Cryptococcus gattii WM276]
gi|317459190|gb|ADV20934.1| Exosome complex exonuclease rrp45, putative [Cryptococcus gattii
WM276]
Length = 281
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 12/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T ++A V A + +P +P +G + I + P A +E GR G++ +
Sbjct: 51 LGKTSILAQVSATIVKPRDDRPYEGFLLINSEIGPMASSVYENGRPGDD------EVMIG 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL ID +L ++ G+ W L + +S GNLLD A AAL + P
Sbjct: 105 RLLEKSIRRTEAIDREALCILAGEKVWQLRLTLHFLSDSGNLLDCAALAGMAALKHFRKP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK-HYIVDATLEEESQMSSA 178
V V + P+ + + P+ T I+D + E S
Sbjct: 165 DVEVIGDEVIIHSPD----ERAPVALAIHHTPLCLTFAYFENLPPILDPSHIEAILCSGT 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++++N Q IC + K GG L I+ ++ R+L+ L+ E+
Sbjct: 221 LTLTLNAQREICVLSKAGGAPLGAEEIMGVVKFGVDKVRELVRHLEEEL 269
>gi|414879372|tpg|DAA56503.1| TPA: hypothetical protein ZEAMMB73_591171 [Zea mays]
Length = 545
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 9/144 (6%)
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
L G +D+ L V GK W + +D ++ + GN +DA AALS P
Sbjct: 64 LLNHPGESRAVDMEFLCVFAGKHVWSVRVDLHILDNGGNPIDAANITALAALSTFWRPEC 123
Query: 122 HVAAEAASDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKHYIV--DATLEEESQMS 176
V D +V + D E L +P+ T G+ IV D T +EE+ M
Sbjct: 124 TVGG----DNGQQVTVHDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMG 179
Query: 177 SAVSISINRQGHICGMIKRGGVGL 200
++ +N G +C + K GG GL
Sbjct: 180 ERMTAIVNSNGDVCAIQKAGGEGL 203
>gi|497643|gb|AAA18832.1| PM-Scl-75 autoantigen [Homo sapiens]
Length = 372
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 37 AEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVIS 96
A P FE +L +L+ ++ CL K ID SL VV G+ W + +D +++
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLMERCLRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLN 56
Query: 97 SDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156
DGN++DA A AL + P V V + + PE + + + +P+ +
Sbjct: 57 HDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSF 112
Query: 157 T--KVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGL 200
+ G + +VD EE M + I++N+ IC + GG+ L
Sbjct: 113 AFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 158
>gi|66824935|ref|XP_645822.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
gi|60473944|gb|EAL71882.1| hypothetical protein DDB_G0271100 [Dictyostelium discoideum AX4]
Length = 526
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 18/204 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V ++ ++ P +P++G D SP + + + +EL ++
Sbjct: 49 LGKTRVFTAITCDIVEPKPERPNEGFYIFNTDISPMSSVSVNVNQPNPMESELGRIIEKG 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + ID +L ++ G W + I V+ GNLLD ++ AL + P
Sbjct: 109 LKDSR-----AIDTEALCIISGSKVWSIKIAIHVLDDCGNLLDCASISVMTALIHFRKPD 163
Query: 121 VHVAAEAAS----DEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQM 175
V V A+ DE+ V +S P+ T IVD +EES M
Sbjct: 164 VTVIGNDATIHSLDEREPVPLS--------IHHTPISITFGFFPNEIMIVDPDTKEESVM 215
Query: 176 SSAVSISINRQGHICGMIKRGGVG 199
+S +N ICG+ K GG
Sbjct: 216 DGKLSFFVNIHKEICGVSKGGGTS 239
>gi|336368904|gb|EGN97246.1| hypothetical protein SERLA73DRAFT_123997 [Serpula lacrymans var.
lacrymans S7.3]
Length = 323
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 115/271 (42%), Gaps = 52/271 (19%)
Query: 2 GSTDVIASVKAELGRPSAMQ-PDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T+++A+VK E+ + + D G+V V CSP A P ++L +L+S L
Sbjct: 62 GGTEILAAVKLEVETVADGEGVDGGRVVGTVSCSPAAYPHLPSGALDDLQHDLTSVLH-- 119
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP- 119
++ +E K W L +D +V+S DGN+ DAL A +AAL +T +P
Sbjct: 120 --------------DTVSYLEKK-SWLLNLDVIVLSDDGNVCDALFMAARAALWDTKVPR 164
Query: 120 --SVHVAAEAASDE---QPEVDISDEEFLQFDTSGV------------------------ 150
SV A+ A + ++++ +E FDT
Sbjct: 165 TRSVEYQAKKAGNNAEGNRDIEMDEEGKSGFDTRITKKVTDFELPDYWDEGEILDGRNIW 224
Query: 151 PVITTLTKVGKHYIVDATLEEES----QMSSAVSISINRQGHICGMIKRGGVGLDPSVIL 206
P+ TL + + +DA L+EES ++ S+ + + + G G+D +I
Sbjct: 225 PICVTLNLLPPVFFLDAALQEESSIPLRLHLMFSLPPSEKPRLQTFRLLGPSGVDVPLIK 284
Query: 207 DMISVANFVSRQLMDKLDSEIAAADADEDES 237
+I +R + LD+++ D ++
Sbjct: 285 SLIKEGEVHARSIWTALDAKLKDEDIRRNQK 315
>gi|156083393|ref|XP_001609180.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
bovis T2Bo]
gi|154796431|gb|EDO05612.1| 3' exoribonuclease family, domain 1 containing protein [Babesia
bovis]
Length = 196
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V +V +E+ P+ P +G V V+ SP +E ++ E+S A++
Sbjct: 61 LGDTIVFVAVSSEIVPPNVEHPTEGIVTFSVELSPMCSLNYEPGKASDVEQEISYAIEK- 119
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ SG ID+ SL +V K W L ++ ++ +DGNLLDA A+ AL + P
Sbjct: 120 -IYKDSGI---IDVESLCIVSRKHVWCLRVNIHILQNDGNLLDATNIAVFKALMSYRKP 174
>gi|322790229|gb|EFZ15228.1| hypothetical protein SINV_06363 [Solenopsis invicta]
Length = 139
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T + +KAEL P A PD G + V+ SP F G A++ S L
Sbjct: 30 LGDTTAVCGIKAELATPKADTPDHGYIVPNVELSPLCSSKFRP-GPPSEQAQVLSKLIDI 88
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
+L +DL L + K+ W LY D L ++ +G+++DA A+ AAL
Sbjct: 89 ILSN----SVALDLKDLCICRNKLVWVLYCDILCLNYNGSVIDACTGAMFAAL 137
>gi|332374620|gb|AEE62451.1| unknown [Dendroctonus ponderosae]
Length = 174
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
+G T VI VKAEL RP P+KG + ++ SP F+ G GEE L+ ++
Sbjct: 53 VGKTTVICGVKAELCRPRPECPNKGFLVPNLELSPLCSSKFKSGPPGEEAQVLTQLIADV 112
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
+++ I+L L +++ K+ W LY D + + DG+LLDA A+ A L
Sbjct: 113 IEN---------SRCINLEELCLLKDKLAWCLYADLVCLDYDGSLLDACIVALMACL 160
>gi|167518071|ref|XP_001743376.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778475|gb|EDQ92090.1| predicted protein [Monosiga brevicollis MX1]
Length = 330
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
ID SL +V+G+ W++ +D V+ + GN+ D + A A + P V +
Sbjct: 122 IDSESLCIVKGEKVWEVRVDVTVLENGGNMADGVCLAALAGILTFRRPYVSLTGGQVKIH 181
Query: 132 QPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQMSSAVSISINRQGHI 189
+ + E + P+ T+ + G+H +VD T EE+ +++ +N G I
Sbjct: 182 ----SLEEHEPVSLSVHHRPIAVTIASIAGGRHLLVDPTSLEEAVAEGCITVCLNGHGEI 237
Query: 190 CGMIKRGGVGLDPSVILDMISVAN 213
C + GG L P + +++ +A
Sbjct: 238 CSINSGGGTPLSPEQMKELLQLAK 261
>gi|156363855|ref|XP_001626255.1| predicted protein [Nematostella vectensis]
gi|156213125|gb|EDO34155.1| predicted protein [Nematostella vectensis]
Length = 225
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 15/195 (7%)
Query: 7 IASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKS 66
+ K E P+A P+KG + VD P P+F E + LS+ + + L+ +S
Sbjct: 12 LCFFKKEFAEPAADVPNKGFIVPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDN-LITKRS 70
Query: 67 GAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAE 126
L+ + W LYID + + DGN+ DA A+ AAL NT + +V + E
Sbjct: 71 --------MELLQHAKYLVWVLYIDLMCLDYDGNVADAAVIAMLAALQNTRLHTVTINEE 122
Query: 127 AASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQMSSAVSISINR 185
+ E S+ + + +PV T H D T EEE S VS+ +
Sbjct: 123 TETPEP-----SENKDIHLKLKSMPVAVTFGIFDDDHIYCDPTDEEERLASGKVSVVMTT 177
Query: 186 QGHICGMIKRGGVGL 200
+ + K GG L
Sbjct: 178 NNKVVAVHKPGGPPL 192
>gi|440637012|gb|ELR06931.1| hypothetical protein GMDG_02301 [Geomyces destructans 20631-21]
Length = 252
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A++ L PS +P G + + SP A PT + L+ L
Sbjct: 51 MGKTRVLATISCSLSPPSPPRPFDGIFTLTTEFSPMATPTVDPSRPSPPETLLARLLDKT 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L A +D SL ++ GK W + D ++S G LLDA A A L + P
Sbjct: 111 L-----RRSAALDTESLCLLAGKSVWAICCDLHILSHGGGLLDACCVAALAGLLHFRRPE 165
Query: 121 VHVAAEA----ASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG------KHYIVDATLE 170
V V E +++E+ V +S L +P T + G + ++DA
Sbjct: 166 VSVEGEKVTIYSAEERAPVPLS---LLH-----LPFCVTFSIFGIRSGEEEAVLLDADRA 217
Query: 171 EESQMSSAVSISINRQGHICGMIKRGG 197
EE AV++ +NR G +C + K GG
Sbjct: 218 EEGVREGAVTVGVNRHGEVCQIAKLGG 244
>gi|388579995|gb|EIM20313.1| exosome complex exonuclease rrp45 [Wallemia sebi CBS 633.66]
Length = 286
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 40/247 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS----PTAEPTFEGRGGEE---LSAEL 53
+G V++SV + +P+ +P +G++ I + S P EP G EE L+ +L
Sbjct: 51 LGECSVMSSVSCTVTQPTPERPYEGQLNISSELSAMTTPFYEPGMRGNTAEEEATLNRQL 110
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
A++ +SG +D +L ++ G+ W L + IS DGNL+DA A AAL
Sbjct: 111 DKAIR------RSGM---VDREALCIIGGEKVWSLNLTLHYISDDGNLIDAGVIAAAAAL 161
Query: 114 SNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-----DAT 168
+ P V EV E+ + VP+ T + Y+ +A
Sbjct: 162 LHFRRPDATVIGN-------EVTYHSED----ERVPVPLAINHTPISFSYVFFDDFDNAV 210
Query: 169 LEE---ESQMSSAV-SISINRQGHICGMIKRGGVGLDPSVILDMISVAN----FVSRQLM 220
L+ ESQ+SSA +I+ Q + + K GG P +LD + A +S+QL
Sbjct: 211 LDPTALESQLSSATFTITTTPQKEVLTITKNGGTTFAPQTVLDCLGHATERAAVISKQLH 270
Query: 221 DKLDSEI 227
++ ++
Sbjct: 271 TAINEDL 277
>gi|342319215|gb|EGU11165.1| Hypothetical Protein RTG_02968 [Rhodotorula glutinis ATCC 204091]
Length = 331
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 45/260 (17%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLL 62
ST+V A V+ E+ + + + GKV + ++C+PTA P+ + L++ L+S L
Sbjct: 79 STEVWAGVRGEV--ENMDEEEGGKVVVSLECAPTALPSLKPDLPIHLASILTSLFSASTL 136
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSD-GNLLDALGAAIKAALSNTGIPSV 121
LS LVV+ W LY+D L++SS GN++D A ++AL+ IP
Sbjct: 137 PPSL-------LSQLVVLPKSRSWTLYLDILILSSSGGNIIDLAILAARSALATARIPQT 189
Query: 122 HV--------AAEAASDEQPEVDISDEEFLQFDTSG------------------------ 149
A AA E + SDE F G
Sbjct: 190 RAIGFEEGDGTATAALGEGAGM-TSDEGFSGLVKGGKGGSKAVDFELVDGGSQGVRLQGW 248
Query: 150 --VPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILD 207
+P+ TL + + +DAT+ EES SS + G ICG+ + G ++ + ++
Sbjct: 249 EELPIGLTLNLINQLPHLDATVLEESASSSQLVACFLPSGTICGVTQLGEGEIEFARLMP 308
Query: 208 MISVANFVSRQLMDKLDSEI 227
+++ A +++L+ +++++
Sbjct: 309 LVTEAGKYAQELLKSVNAKL 328
>gi|294877908|ref|XP_002768187.1| Exosome complex exonuclease RRP43, putative [Perkinsus marinus ATCC
50983]
gi|239870384|gb|EER00905.1| Exosome complex exonuclease RRP43, putative [Perkinsus marinus ATCC
50983]
Length = 291
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAG 69
V LG P + P +G++ + VD P A+ + R +++S+ +++ + L G
Sbjct: 60 VHPLLGEPLSSMPRQGRLTVSVDLPPAADQS--RRQAQQVSSWVATKVGSILQMGPEV-- 115
Query: 70 AGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAAS 129
D S L VVEG+V W L++ V+S DG+L+D A AL + +P++ A EA S
Sbjct: 116 --FDPSQLCVVEGQVVWQLHLVITVLSVDGSLMDVCMRAAVEALQSVQLPALF-AGEALS 172
Query: 130 DEQPEVDIS 138
D +V+I+
Sbjct: 173 DRAADVNIA 181
>gi|428170337|gb|EKX39263.1| hypothetical protein GUITHDRAFT_76548 [Guillardia theta CCMP2712]
Length = 277
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 104/248 (41%), Gaps = 40/248 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-------GRGGEELSAEL 53
+G T V A + + PSA + +G V + V+ P F+ + LSA L
Sbjct: 38 VGRTVVAAGINLSVVCPSASRGAEGIVRVTVEFGPACSSRFQHFRYRKANLKAQALSAHL 97
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
+ + + +DLS+LV+ E W + + ++ GNL DA A+ +AL
Sbjct: 98 TRVINEARV---------VDLSALVMKEDAAVWVVDVHVTCLNHGGNLEDASMLAVLSAL 148
Query: 114 SNTGIPSVH-----VAAEAASDEQPEVDIS---DEEFLQFDTSGVPVITTLTKVGKHYIV 165
+T +P+V V AE D P V S F FD VPV +V
Sbjct: 149 VDTKLPAVEMKENDVMAEVEGDSVPLVIQSFPISHTFALFDFGDVPV---------KVLV 199
Query: 166 DATLEEESQMSSAVSISINRQG-------HICGMIKRGGVGLDPSVILDMISVANFVSRQ 218
D T EEE S VS+ ++ Q H + K GG+ + ++ +IS A +
Sbjct: 200 DPTDEEEKHCHSIVSVILDVQRGAEKEEEHAFFLNKSGGLPVSRKLLQQVISEARKRTEA 259
Query: 219 LMDKLDSE 226
+++K E
Sbjct: 260 ILNKFFPE 267
>gi|405123132|gb|AFR97897.1| exosome complex exonuclease rrp45 [Cryptococcus neoformans var.
grubii H99]
Length = 282
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 31/239 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T ++A V A + +P +P +G + I + P A +E GR G++ +
Sbjct: 51 LGKTAILAQVSAAIVKPRDDRPYEGFLLINSEIGPMASSVYENGRPGDD------EVMIG 104
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL ID +L ++ G+ W L + +S GNLLD A AAL + P
Sbjct: 105 RLLEKSIRRTEAIDREALCILAGEKVWQLRLTLHFLSDSGNLLDCAALAGMAALKHFRKP 164
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQF---DTSGVPVITTLTKVGKHY--------IVDAT 168
V V I DE +Q + + VP+ T + + I+D +
Sbjct: 165 DVEV-------------IGDEVIIQHSPDERAPVPLAIHHTPLCLTFAYFENLPPILDPS 211
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
E S +++++N Q IC + K GG L I+ ++ V R+L+ L+ E+
Sbjct: 212 HVEVILCSGTLTLTLNAQREICVLSKAGGGPLGAEEIMGVVKVGVDKVRELVRHLEEEL 270
>gi|392559604|gb|EIW52788.1| ribosomal protein S5 domain 2-like protein [Trametes versicolor
FP-101664 SS1]
Length = 342
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 49/212 (23%)
Query: 2 GSTDVIASVKAELGRPSAMQP----DKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSAL 57
G T+V+A+ K E+ M+ D G+V V CSP+A +EL +L+ L
Sbjct: 64 GGTEVLAATKLEV---EDMETGDGVDGGRVVCSVSCSPSAYSHLSSNALDELQHDLTVIL 120
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
Q + + + +L ++ K W L +D ++++ GN +DAL A +AAL +T
Sbjct: 121 QQTI------SHPSLHPQNLTIIPRKKSWLLNLDAVILADAGNAVDALFMAARAALWDTK 174
Query: 118 IPSVHV-------AAEAASDEQPEVDISDEEFLQ----FDTSGV---------------- 150
+P A++ A D +D+ + E + FDT +
Sbjct: 175 VPRTRAVEYNAPEASQVARDSAGAMDVDNREAIPAVSGFDTREMVRTAADFELPDYWDEG 234
Query: 151 ---------PVITTLTKVGKHYIVDATLEEES 173
PV TL + + +DAT EE+
Sbjct: 235 EVLQGQEKWPVCVTLNLLPPTHFLDATQPEEA 266
>gi|402219272|gb|EJT99346.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 329
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 114/274 (41%), Gaps = 50/274 (18%)
Query: 1 MGSTDVIASVKAELGR-------PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAEL 53
+G TDV+ +VK + R Q K + V+CSP+A P +LS++L
Sbjct: 52 VGDTDVLVAVKLDAVRLDDVVDGDDERQEGKAQFVCSVECSPSALPHLPTDTLPDLSSDL 111
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
++ L + + + L L++V + W L +D L++S GN+ D L AA++AAL
Sbjct: 112 TTLLSY-----YLSLPSLLPLRQLLIVPRRRAWQLSVDALLLSYGGNVTDVLFAAVRAAL 166
Query: 114 SNTGIPSVH---------------------------VAAEAASDEQPEV------DISDE 140
+ +P V A +PE D SDE
Sbjct: 167 WDLRVPKTRNFVYDTPDAADSALGPGLGGFRIERAGVLDHARGLRRPEAADFELEDGSDE 226
Query: 141 EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGL 200
+PV TL + + +DA EE+ V + + G +CG+ + G +
Sbjct: 227 GVPLEGRELLPVCITLNLLTPIFYLDALPAEEACTPCRVILFVRPSGALCGLHRVGDSEI 286
Query: 201 DPS----VILDMISVANFVSRQLMDKL-DSEIAA 229
P+ V+ + + +++ L D+L D +IA+
Sbjct: 287 MPAELKQVLHEAVKHGQELAKALNDRLRDPKIAS 320
>gi|443926207|gb|ELU44925.1| 3' exoribonuclease family domain-containing protein [Rhizoctonia
solani AG-1 IA]
Length = 325
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQP-----DKGKVAIFVDCSPTAEPTFEGRGGEELSAELSS 55
+G T+V +K E+ A D G+V V C+P + P G+ +++S E S+
Sbjct: 57 VGGTEVWTGIKLEVETNEAKLAGASGQDGGRVEFVVACTPGSHPHLSGQAIDDISLEYSN 116
Query: 56 ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
L A I +V G W +++D LVIS GNL+D L AI+ AL +
Sbjct: 117 QCAAAL------ASFLIPNPQFTIVPGYKSWLIHVDSLVISDAGNLVDVLWMAIRGALWD 170
Query: 116 TGIPSVH 122
IP +
Sbjct: 171 LRIPRTN 177
>gi|225718348|gb|ACO15020.1| Exosome complex exonuclease RRP45 [Caligus clemensi]
Length = 366
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 25/230 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+AS +G P +++P++G + + EP + E EL+ ++
Sbjct: 47 LGDTRVLASTSCSVGEPRSVRPNEGILKTHI------EPLSKRSMTTEALVELNRVIERV 100
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D+ SL + + W + ++ ++S GN D A AAL + P
Sbjct: 101 LKESKC-----VDMESLCISSEEKVWIISLEMTLLSDAGNAADCASIAGLAALCHFKRPD 155
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGV-----PVITTLTKVGKHYIVDATLEEESQM 175
V + + I F D + PV++T G+ ++D + EEE+ M
Sbjct: 156 VTLKGDK---------IRIHPFYGRDPVPLAIHHHPVLSTFALYGRVSLLDPSREEEAVM 206
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
V +N IC + G +D +++L + S A ++ ++++L +
Sbjct: 207 DGKVVPGMNPYREICALHLAGQKLVDKALVLQLASKAAEEAKNIVNQLKN 256
>gi|123508639|ref|XP_001329682.1| nucleolar autoantigen-like protein [Trichomonas vaginalis G3]
gi|121912729|gb|EAY17547.1| nucleolar autoantigen-like protein, putative [Trichomonas vaginalis
G3]
Length = 315
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 18/137 (13%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 130
+DL SLV+ GK+ W+L + +++ +DG L +A+ A+ L T +PS
Sbjct: 108 ALDLESLVIQIGKLVWELKCEIVILENDGGLFEAMTLAVGCGLLATKLPSTRGDRSLTLH 167
Query: 131 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHIC 190
P +P+ L + VD T+ E ++I N QG IC
Sbjct: 168 HLP----------------IPITFALIDQRTRF-VDPTVLEALACDGFLTICANAQGEIC 210
Query: 191 GMIKRGGVGLDPSVILD 207
+ K GGV L PS ++D
Sbjct: 211 SIRKNGGVTL-PSTVMD 226
>gi|71409477|ref|XP_807083.1| exosome-associated protein 1 [Trypanosoma cruzi strain CL Brener]
gi|70871001|gb|EAN85232.1| exosome-associated protein 1, putative [Trypanosoma cruzi]
Length = 383
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 96 SSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT 155
++DGNL + A+ AAL +PSV + EA+ EVD S D S +PV+T
Sbjct: 219 TNDGNLPSIISLAVHAALKAVKLPSVTLH-EASGGVSLEVDRSKPFCRPVDWSRLPVLTV 277
Query: 156 L-TKVGKHYIVDATLEEESQMSSAVSISINRQGHICGM 192
L +HY+VD T EE + + +++N GH+C M
Sbjct: 278 LLISPTRHYVVDPTPLEELALPQQLHLAMNAAGHVCYM 315
>gi|358058357|dbj|GAA95876.1| hypothetical protein E5Q_02533 [Mixia osmundae IAM 14324]
Length = 280
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 19/201 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ +V+ E P M+PD+G + I + P A F + + L+S L+
Sbjct: 62 VGQTTMMCTVRVETAEPDLMRPDEGFLIINAELMPIASSQFLSGPPSDDAQVLASRLRQV 121
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + + L L + K +Y+D +S DGN LD A+ AL + IP
Sbjct: 122 I-----SSSNMLPLRKLGIRRAKAVLVVYVDVACLSFDGNALDVAVMAVTQALYSARIPV 176
Query: 121 VHVAAE----AASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQM 175
+ E AS P + E PV+T + G+ + D T E +Q
Sbjct: 177 ITFEEENNRVIASASLPREPLKLSE---------PVLTCSFALFGQTVLSDPTDHESAQS 227
Query: 176 SSAVSISINRQGHICGMIKRG 196
S +++++R G I +++ G
Sbjct: 228 RSLATVALSRSGMIRYVLQSG 248
>gi|294873385|ref|XP_002766601.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239867633|gb|EEQ99318.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 418
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 28/217 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRG------GEELSAE-- 52
+G T + A V +L P + +P +G+++I V+ P A P G G + E
Sbjct: 31 IGKTRIRAVVTGQLTSPPSNRPREGRLSINVEAGPMAAPAVLPSGNSSGLVGSAQTPEGI 90
Query: 53 -LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKA 111
L + L+ L G + +D+ +L + G + W+L +D V+S +GN+ DA A
Sbjct: 91 SLCNQLERMLKGSNA-----VDVEALCIQSGSLVWELRLDVHVLSDNGNVGDAAAIASTV 145
Query: 112 ALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV----GKHYIVDA 167
AL + + AE + + D + + +P+ T + G++ ++ A
Sbjct: 146 ALRH------YRRAEVSVVNGEIIYKPDLDPIPLSVHHMPIPVTFASIPSSLGENPLLLA 199
Query: 168 ---TLEEESQMSSA-VSISINRQGHICGMIKRGGVGL 200
+LEE Q + + +N+ G +CG +K GG L
Sbjct: 200 DPSSLEESLQGDGGQLVVVMNQYGELCGALKSGGASL 236
>gi|407411255|gb|EKF33402.1| exosome-associated protein 2, putative,3' exoribonuclease, putative
[Trypanosoma cruzi marinkellei]
Length = 278
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 24/195 (12%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAG 69
V G P + P++G++ + V P F G ++ L + +S
Sbjct: 73 VTGMFGPPPSQHPEEGRLTVDV-----TAPFFPGYSAFQIEGTLHELARFV----RSTII 123
Query: 70 AGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAAS 129
+ +DL+ L V+ G+ CW L ++ +V+++DG L A A AAL N +P +
Sbjct: 124 SCLDLTKLCVISGEACWVLRVELIVMNADGGLRAATLHATVAALHNLTLPKARL------ 177
Query: 130 DEQPEVDISDEEFLQFDTSGVPVITTLTKVGK----HYIVDATLEEESQMSSAVSISINR 185
P D+ + L F +PV T+ G +++D EES +++ I+
Sbjct: 178 ---PSGDVVESRCLCFHR--IPVAATIGVCGTAGSMQFLLDTNAAEESVADVLLTVVIDE 232
Query: 186 QGHICGMIKRGGVGL 200
I + G L
Sbjct: 233 TDGIVSFVHHGRFPL 247
>gi|409041826|gb|EKM51311.1| hypothetical protein PHACADRAFT_129196 [Phanerochaete carnosa
HHB-10118-sp]
Length = 347
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 7/151 (4%)
Query: 2 GSTDVIASVKAELGR-PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G T+VIA+VK E+ + D G++ V CSP A P +EL + ++ L
Sbjct: 65 GGTEVIAAVKLEVENVENGDGVDGGRIVCTVLCSPAAYPQLSSNALDELQYDYTAVLHQT 124
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + + S+L ++ K W L +D ++S GN D + A +AAL +T +P
Sbjct: 125 L------SHPTLRPSNLGILPRKKSWLLNLDITIVSDAGNTYDVMFMAARAALWDTKVPR 178
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVP 151
AA + + E + D GVP
Sbjct: 179 TRSVQYAARKGSAPMIQAGEASMDVDEDGVP 209
>gi|389584408|dbj|GAB67140.1| exosome complex exonuclease [Plasmodium cynomolgi strain B]
Length = 505
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 93/217 (42%), Gaps = 34/217 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VI + +E+ +P +P +G + + +D + +E C
Sbjct: 47 IGHTKVICKITSEIVKPFDKRPCEGMIKVNLDIDSFTNVNDNSQISDE-----------C 95
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ +L+ K W L + +VI +DGNL D+ + +AL
Sbjct: 96 L-----------EIKNLIERILKSIWCLLVSIIVIENDGNLYDSCYLSAYSAL------- 137
Query: 121 VHVAA-EAASDEQPEVDISDEE--FLQFDTSGVPVITTLTKVGKHYI--VDATLEEESQM 175
VH E D + I + E + P++TT I +D +++EE M
Sbjct: 138 VHYRNNEVTVDSSGNIIIEEGETNYTPLSIHNTPILTTFAYFNCEDICLIDPSIQEEEFM 197
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
SS +S+++N+ G + ++K GG + IL+ I +A
Sbjct: 198 SSKLSVALNKNGKLVSILKPGGSPISYEKILEAIELA 234
>gi|74026302|ref|XP_829717.1| exosome-associated protein 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|22797842|emb|CAD23610.1| exosome-associated protein 2 [Trypanosoma brucei]
gi|70835103|gb|EAN80605.1| exosome-associated protein 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 294
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 9 SVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGA 68
+V G P + QPD+G++ + V A P F+ ++++A L + +S
Sbjct: 69 TVSGVFGPPPSDQPDEGRLTVDV-----AAPFFQSHSTDQVAAALREVARFV----RSTI 119
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
+ +DL+ L ++ G+ CW L ++ +++++DG L A A+ AA+ N +P +
Sbjct: 120 ISCMDLTELNIINGEACWVLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRL----- 174
Query: 129 SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK---HYIVDATLEEESQMSSAVSISINR 185
P D + L+F T V V + K+G +++D EES + +++ ++
Sbjct: 175 ----PNGDEVESRRLRFHTIPVAVTIGVYKLGASGVRFLMDTNAAEESVVDGLLTVVLSD 230
Query: 186 QGHICGMIKRG 196
+ I ++ G
Sbjct: 231 ENGIITFVQSG 241
>gi|403411789|emb|CCL98489.1| predicted protein [Fibroporia radiculosa]
Length = 824
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 13/122 (10%)
Query: 2 GSTDVIASVKAELGRPSAMQP----DKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSAL 57
G T+V+A+ K E+ +Q D G++A V CSP A P +EL ++++ L
Sbjct: 547 GGTEVLAAAKLEV---EDVQQGDGVDGGRIACSVTCSPAAYPYLTSNALDELQYDMTAVL 603
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
L + + +L ++ GK W L +D +V++ GN+ DA+ A +AAL +T
Sbjct: 604 HQTL------SHPSLHPKNLGILPGKKSWLLSLDVVVLADAGNVYDAVFMASRAALWDTK 657
Query: 118 IP 119
+P
Sbjct: 658 VP 659
>gi|261335755|emb|CBH18749.1| exosome-associated protein 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 294
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 9 SVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGA 68
+V G P + QPD+G++ + V A P F+ ++++A L + +S
Sbjct: 69 TVSGVFGPPPSDQPDEGRLTVDV-----AAPFFQSHSTDQVAAALREVARFV----RSTI 119
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAA 128
+ +DL+ L ++ G+ CW L ++ +++++DG L A A+ AA+ N +P +
Sbjct: 120 ISCMDLTELNIINGEACWVLQVELVILNADGGLRAAALHAVVAAIHNMLLPRSRL----- 174
Query: 129 SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK---HYIVDATLEEESQMSSAVSISINR 185
P D + L+F T V V + K+G +++D EES + +++ ++
Sbjct: 175 ----PSGDEVESRRLRFHTIPVAVTIGVYKLGASGVRFLMDTNAAEESVVDGLLTVVLSD 230
Query: 186 QGHICGMIKRG 196
+ I ++ G
Sbjct: 231 ENGIITFVQSG 241
>gi|358056344|dbj|GAA97711.1| hypothetical protein E5Q_04390 [Mixia osmundae IAM 14324]
Length = 287
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 23/238 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
MG T V+A V AE+ RP +P +G + I + +P A +E E ++ L+
Sbjct: 50 MGKTRVMAQVSAEVVRPPPERPYEGFLVISTEVTPLASAAYEMNRQTEEEILVARTLEKA 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +D SL +V G W + +D ++ DGNL D A AAL + P
Sbjct: 110 IRRTEA-----VDRESLCIVAGDKVWSIRVDVHFLNDDGNLADCACLAAMAALLHFRRPD 164
Query: 121 VHVAAEA-----ASDEQPEVDISDEE------FLQFDTSGVPVITTLTKVGKHYIVDATL 169
V V A + +E+ V ++ F F+ P + + +D T
Sbjct: 165 VTVENGADVTIHSLEERVPVPLAIHHTPLCVTFAFFENQASPSDSIVA-------IDPTG 217
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
E S ++ ++N Q IC + K GG L I+ M+ +A ++L + +D+ +
Sbjct: 218 LETQISSGEITYTLNAQSEICVLSKAGGTPLAGREIMRMMGLALVKVKELDELIDAAL 275
>gi|163311569|gb|ABY26743.1| Rrp45p, partial [Pichia kudriavzevii]
Length = 353
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 81/215 (37%), Gaps = 53/215 (24%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 130
+DL SL ++ G+ CW + D ++SDGNL+DA A+ AL + P V +
Sbjct: 124 ALDLESLCIIAGQKCWAVRADVRFLNSDGNLVDAASIAVITALLHFRKPDVELVGSGEGT 183
Query: 131 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI-------------------------- 164
E D E + +P+ T +
Sbjct: 184 ELIIYDEKQREMVPLSILHIPICVTFQFFSTESVERNIKGESLDSRSRSRQVKSNNGDEG 243
Query: 165 -----------------------VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLD 201
VDAT EEE ++++++N +C + K GG+ +D
Sbjct: 244 DDDLMDVDYEANDGPRASNEVVIVDATSEEELLSQGSMTVTLNSNKELCQISKSGGLNVD 303
Query: 202 PSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
+L+ +A+ +++DK +I AD+++
Sbjct: 304 SKKVLECCQIAS----KIVDKWTKQIKQVLADDEK 334
>gi|407843800|gb|EKG01641.1| exosome-associated protein 1, putative [Trypanosoma cruzi]
Length = 383
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 96 SSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT 155
++DGNL + A+ AAL +PSV + E + EVD S D S +PV+T
Sbjct: 219 TNDGNLPSIISLAVHAALKAVKLPSVTLH-ETSGGVSLEVDRSKPFRRPVDWSRLPVLTV 277
Query: 156 L-TKVGKHYIVDATLEEESQMSSAVSISINRQGHICGM 192
L +HY+VD T EE + + +++N GH+C M
Sbjct: 278 LLISPTRHYVVDPTPLEELALPQQLHLAMNAAGHVCYM 315
>gi|71656277|ref|XP_816688.1| exosome-associated protein 1 [Trypanosoma cruzi strain CL Brener]
gi|70881833|gb|EAN94837.1| exosome-associated protein 1, putative [Trypanosoma cruzi]
Length = 383
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 96 SSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT 155
++DGNL + A+ AAL +PSV + E + EVD S D S +PV+T
Sbjct: 219 TNDGNLPSIISLAVHAALKAVKLPSVTLH-ETSGGVSLEVDRSKPFRRPVDWSRLPVLTV 277
Query: 156 L-TKVGKHYIVDATLEEESQMSSAVSISINRQGHICGM 192
L +HY+VD T EE + + +++N GH+C M
Sbjct: 278 LLISPTRHYVVDPTPLEELALPQQLHLAMNAAGHVCYM 315
>gi|157823529|ref|NP_001099902.1| exosome complex exonuclease RRP43 [Rattus norvegicus]
gi|149064772|gb|EDM14923.1| exosome component 8 (predicted), isoform CRA_c [Rattus norvegicus]
Length = 140
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 98 DGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT 157
DGN+LDA A+ AAL N +P V + E A EV++ + +L + PV T+
Sbjct: 9 DGNILDACTFALLAALKNVQLPEVTINEETA---LAEVNLKKKSYL--NVRANPVATSFA 63
Query: 158 KVGKHY-IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVS 216
IVD T EEE + +++ ++ +G +C + K GG GL + + D +S A
Sbjct: 64 VFDDTLLIVDPTGEEEHLSTGTLTVVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVTRH 123
Query: 217 RQLMDKLDSEI 227
+++ LD I
Sbjct: 124 KEVSKLLDEVI 134
>gi|393216212|gb|EJD01703.1| hypothetical protein FOMMEDRAFT_88508 [Fomitiporia mediterranea
MF3/22]
Length = 294
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T ++ VKAE+ P P+ G + +D P F+ + + LS L
Sbjct: 77 LGDTTIVCGVKAEIAEPELDSPELGFIVPNLDLPAICSPKFKPGPPADEAQVLSERLYDA 136
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ ++ + L SL + K W LY+D I+ DGN+ DA A+ AAL NT +P
Sbjct: 137 LISSET-----VSLPSLCIHPRKAVWVLYVDATCINFDGNVFDAALLAMIAALKNTRLP 190
>gi|393248126|gb|EJD55633.1| ribosomal protein S5 domain 2-like protein [Auricularia delicata
TFB-10046 SS5]
Length = 310
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T+V+AS K E+ D+G +A V C +A PT ++L+A+ + L H
Sbjct: 50 IGGTEVLASAKLEV-----TDADRGAIACNVVCPVSAYPTLAPGALDDLAADHTHVL-HS 103
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+LG S + +L ++ K W L +D LV++ GN+ DAL A + AL +T +P
Sbjct: 104 VLGDPS-----LVPDTLTIIPKKKAWLLTLDLLVMADAGNIYDALFLAARIALIDTRVP 157
>gi|71031797|ref|XP_765540.1| exosome complex exonuclease Rrp45 [Theileria parva strain Muguga]
gi|68352497|gb|EAN33257.1| exosome complex exonuclease rrp45, putative [Theileria parva]
Length = 276
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 42/235 (17%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
G+T V + E+ P++ +P++G + V+ SP ++E + L L++
Sbjct: 60 FGNTVVFTCISQEIVEPNSERPNEGFLFFNVETSPFTSESYEPGKTTDQEHNLIYFLENM 119
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL +L + GK W L + V+ DGNLL A + A+L
Sbjct: 120 F-----KESSCLDLETLCITSGKQVWALRVYVHVLQDDGNLLSACSLSALASL------- 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQF----------DTSGVPVITT--LTKVGKHYIVDAT 168
+H +P +++SDE F + VP+ T L + H ++D
Sbjct: 168 LHY-------RKPLMELSDELNHSFYGLWHKGTPLNIYHVPMFVTVWLLEAPDHSLLDHN 220
Query: 169 LE-----------EESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
L EE + + VSI N+ G + + K G + ISV+
Sbjct: 221 LSEYKFVLEPNSFEEKLLKTQVSILFNQFGEVLWIYKNGSTPVPLETFESAISVS 275
>gi|403335752|gb|EJY67058.1| hypothetical protein OXYTRI_12647 [Oxytricha trifallax]
Length = 297
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
+I ++KA+L +P +P KG++ ++ S T F EE S + + L + L
Sbjct: 59 IICAIKADLQKPLPSEPKKGQIKFHLESSQTGSSLF---TREEQSEIIKNRLLNILY--- 112
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISS-DGNLLDALGAAIKAALSNTGIPSVH 122
+ G ID L V EG+ W L +D LV+ LD +G AI++A + +P+V+
Sbjct: 113 TLYGNIIDREELNVFEGQFSWLLNVDILVMEELSFQQLDYIGLAIRSAFLDFQLPAVN 170
>gi|167537668|ref|XP_001750502.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771042|gb|EDQ84716.1| predicted protein [Monosiga brevicollis MX1]
Length = 1499
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 26/194 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD------CSPTAEPTFEGRGGEELSAELS 54
MG T V+AS+KAE P + P+ + + CS T P LS LS
Sbjct: 1258 MGKTSVMASLKAEFANPP-LNPNAASGWLVANVTMPPMCSSTITPGPPSTQARALSTFLS 1316
Query: 55 SAL-QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
L +H + + LV+ K+ W L++D +V++ DGNL DA+ A AAL
Sbjct: 1317 DILLRHNV----------VRPEQLVIKANKLVWCLFLDVVVLNDDGNLPDAILLAAAAAL 1366
Query: 114 SNTGIPSVHVAAE---AASDEQPEVDISDEEFLQFDTSGVPVITT---LTKVGKHYIVDA 167
+P+V A E A D P VD S L +P+ T L + + +VD
Sbjct: 1367 QTATLPTVESADENEDAGEDTIPTVDPSQRVALSLGQ--LPLAATMAWLHQDAEEILVDP 1424
Query: 168 TLEEESQMSSAVSI 181
T EEE+ ++ +++
Sbjct: 1425 THEEENMATACMTV 1438
>gi|407404805|gb|EKF30129.1| exosome-associated protein 1 [Trypanosoma cruzi marinkellei]
Length = 384
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 96 SSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITT 155
++DGNL + A+ AAL +PSV + E + EVD S D S +PV+T
Sbjct: 220 TNDGNLPSVISLAVHAALKAVKLPSVTLH-ETSGGVSLEVDRSKPFLRPVDWSRLPVLTV 278
Query: 156 L-TKVGKHYIVDATLEEESQMSSAVSISINRQGHICGM 192
L +HY+VD T EE + + +++N GH+C M
Sbjct: 279 LLISPTRHYVVDPTPLEELALPQQLLLAMNAAGHVCYM 316
>gi|449544735|gb|EMD35707.1| hypothetical protein CERSUDRAFT_115670 [Ceriporiopsis subvermispora
B]
Length = 283
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 31/235 (13%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G T V+A V A++ +P +P +G + I + SP A +E GR +E ++ L
Sbjct: 51 LGKTRVLAQVDAKMVKPLPERPLEGIITIHSEISPMASSDYEPGRPSDE-EVTITRMLDK 109
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L +D SL ++ G+ W L + ++ GN+LD A A + P
Sbjct: 110 VLRRSDV-----VDKESLCILAGQRVWHLRLTIHCLADAGNMLDCACLAGVIAFKHFRRP 164
Query: 120 SVHVAAEAASDEQP----EVDISDEE------FLQF-DTSGVPVITTLTKVGKHYIVDAT 168
V V E + P V +S F F DTS PV+ D +
Sbjct: 165 EVEVVGEEVTVHHPSERAPVPLSMHHTPYCLTFAYFPDTSTAPVL------------DPS 212
Query: 169 LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
E+ + +SI++N Q +C + K GGV L IL +I VA +++L D+L
Sbjct: 213 HLEQRLSAGLLSIALNAQRELCVVQKAGGVPLGADEILGIIDVAVDKAKEL-DRL 266
>gi|443895452|dbj|GAC72798.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Pseudozyma
antarctica T-34]
Length = 321
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 38/242 (15%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGG-EELSAELSSALQHCLL 62
T V SV+A L P + +P +G + I D SP A ++ GG SA L L+
Sbjct: 56 TRVSTSVRATLMPPRSDRPYEGFLQITTDISPMAGVEYDSTGGGANSSARAREVLFDRLI 115
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDAL----------------- 105
+D +L VV G+ W++++ ++S G LDA
Sbjct: 116 EKAVRRTEAVDREALCVVAGEQVWNVHLTVHLLSDTGAALDAAVLSSMLSLRHFRRPDYS 175
Query: 106 ---GAAIKAALSNTGIP---SVHVAAEAAS----------DEQPEVDISDEEFLQFDTSG 149
G ++ ++ +P ++H + QPE + D++ L TS
Sbjct: 176 IENGNQVRLYSADERVPVPLAIHHTPLCVTFSIFNLVPTKPTQPEKN--DDDDLIEPTSS 233
Query: 150 VPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMI 209
P T G ++D +L EE+ S +++ +N Q IC + K G ++P +L++I
Sbjct: 234 TP--TQTADSGSVALLDPSLLEETLAHSKLTLVLNAQREICVLDKSYGSPINPHTLLELI 291
Query: 210 SV 211
+V
Sbjct: 292 NV 293
>gi|407425705|gb|EKF39504.1| ribosomal RNA processing protein 45, putative [Trypanosoma cruzi
marinkellei]
Length = 333
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 105/252 (41%), Gaps = 26/252 (10%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGR--GGEELSAELSSALQH 59
G T V A++ EL P +P G + V P E + G ++L+A L ++
Sbjct: 61 GGTIVTAAIACELVEPYPYRPKHGMLDFSVR-QPCTERDSSAKTAGLKKLTAFLERLIK- 118
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
G +D SL V+ G+ W + +D V++ +GN+ D A A L + P
Sbjct: 119 --------GGGVVDTESLCVLPGRRVWSISVDVTVLNDEGNVTDVAVWATVAVLLHYRRP 170
Query: 120 SVHVAAEAA----SDEQPEVDISDEE---FLQFDTSGVPVITTLTKVGKH-------YIV 165
+ + ++ + E+ V +S F + P G+ +V
Sbjct: 171 ELTIRGDSVIVHPTHERDPVPLSIHHTPLCFSFAVTMAPGDRNKLARGRRDSQEALEVVV 230
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
D T E + SS+V +++N +G +C + K G + + + + A+ ++ ++ +
Sbjct: 231 DPTFAEATAASSSVLVAVNAEGQVCSVSKSEGSCIHLNELNHCMETASLLAPHILSLIRD 290
Query: 226 EIAAADADEDES 237
+AA D E+
Sbjct: 291 AMAAHDKRRQEA 302
>gi|147852316|emb|CAN82224.1| hypothetical protein VITISV_011872 [Vitis vinifera]
Length = 1621
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 14/179 (7%)
Query: 69 GAG-IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEA 127
G+G I+L L +V GK W Y+D + +DG+L DA A AA S+ IP V + E
Sbjct: 130 GSGMINLKELSLVSGKAAWMAYLDIYCLDADGSLFDAALLAAVAAFSHLRIPVVSLNEEG 189
Query: 128 ASDE--------QPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
+ E + ++ + S +P T + + D T EEES M + V
Sbjct: 190 RVVVVSEENEEGKSEKEPVNKGKRKLTLSSLPFSLTCILHKNYILADPTAEEESIMETLV 249
Query: 180 SISINRQGHICGMIKRGGVGL-DPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
++ ++ G + + K GG L S + D I+ ++RQ + +L S + A +D +++
Sbjct: 250 TVVLDSSGQLVSLYKPGGPVLAYASAVQDCIA----LTRQRVKELKSILNEAISDMEKT 304
>gi|339244011|ref|XP_003377931.1| putative exosome complex exonuclease RRP43 [Trichinella spiralis]
gi|316973204|gb|EFV56824.1| putative exosome complex exonuclease RRP43 [Trichinella spiralis]
Length = 280
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 15/200 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T I + E+ + P G V SPT +++ ++ L S ++
Sbjct: 59 IGGTAAICGINLEIMENDTLIPSPGLVVNIESVSPTIVVSWQNEI-DKTKCILKSLIEKN 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
++ KS L + +G++ W +Y D +V+ G +L+ A+ AAL P
Sbjct: 118 IVNSKS----------LEIFDGELFWVIYCDFVVLDCAGGILEVCLVALLAALQELRFPV 167
Query: 121 VHVAAE--AASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQMSS 177
V V E + + +VD ++ + F + PV + K G ++ D T EE +
Sbjct: 168 VKVLHEDFKINLKNIKVDTAETSPVLF-PNVYPVACSFLKFGDEILICDPTDEETKLIGD 226
Query: 178 AVSISINRQGHICGMIKRGG 197
A +I + Q +CG+ K GG
Sbjct: 227 AFTIIVGAQKTLCGLFKTGG 246
>gi|218664806|gb|ACK99565.1| Rrp45p [Pichia kudriavzevii]
gi|218664811|gb|ACK99569.1| Rrp45p [Pichia kudriavzevii]
gi|218664815|gb|ACK99572.1| Rrp45p [Pichia kudriavzevii]
gi|218664819|gb|ACK99575.1| Rrp45p [Pichia kudriavzevii]
gi|218664823|gb|ACK99578.1| Rrp45p [Pichia kudriavzevii]
gi|218664827|gb|ACK99581.1| Rrp45p [Pichia kudriavzevii]
gi|218664831|gb|ACK99584.1| Rrp45p [Pichia kudriavzevii]
gi|218664835|gb|ACK99587.1| Rrp45p [Pichia kudriavzevii]
gi|218664839|gb|ACK99590.1| Rrp45p [Pichia kudriavzevii]
gi|218664843|gb|ACK99593.1| Rrp45p [Pichia kudriavzevii]
Length = 353
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 53/215 (24%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 130
+DL SL ++ G+ CW + D ++ DGNL+DA A+ AL + P V +
Sbjct: 124 ALDLESLCIIAGQKCWAVRADVRFLNYDGNLVDAASIAVITALLHFRKPDVELVGSGEGT 183
Query: 131 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI-------------------------- 164
E D E + +P+ T +
Sbjct: 184 ELIIYDEKQREMVPLSILHIPICVTFQFFSTESVERNIKGESLDSRSRSRQVKSNNGDEG 243
Query: 165 -----------------------VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLD 201
VDAT EEE ++++++N +C + K GG+ +D
Sbjct: 244 DDDLMDVDYEANDGPRASNEVVIVDATSEEELLSQGSMTVTLNSNKELCQISKSGGLNVD 303
Query: 202 PSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
+L+ +A+ +++DK +I AD+++
Sbjct: 304 SKKVLECCQIAS----KIVDKWTKQIKQVLADDEK 334
>gi|163311573|gb|ABY26746.1| Rrp45p, partial [Pichia kudriavzevii]
Length = 353
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 53/215 (24%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 130
+DL SL ++ G+ CW + D ++ DGNL+DA A+ AL + P V +
Sbjct: 124 ALDLESLCIIAGQKCWAVRADVRFLNYDGNLVDAASIAVITALLHFRKPDVELVGSGEGT 183
Query: 131 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI-------------------------- 164
E D E + +P+ T +
Sbjct: 184 ELIIYDEKQREMVPLSILHIPICVTFQFFSTESVERNIKGESLDSRSRSRQVKSNNGDEG 243
Query: 165 -----------------------VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLD 201
VDAT EEE ++++++N +C + K GG+ +D
Sbjct: 244 DDDLMDVDYEANDGPRASNEVVIVDATSEEELLSQGSMTVTLNSNKELCQISKSGGLNVD 303
Query: 202 PSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
+L+ +A+ +++DK +I AD+++
Sbjct: 304 SKKVLECCQIAS----KIVDKWTKQIKQVLADDEK 334
>gi|312372348|gb|EFR20329.1| hypothetical protein AND_20269 [Anopheles darlingi]
Length = 243
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KAEL P A++P++G + V+ SP + P++ E + S +L
Sbjct: 86 IGNTTVVCGIKAELAAPKAVEPNQGYLIPNVEISPVSSPSYRPGPPSEEAQVYSQSLADV 145
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYID 91
+ IDL+ L V GK+ W LY D
Sbjct: 146 FSKARC-----IDLAQLCVEPGKLVWVLYCD 171
>gi|342320414|gb|EGU12354.1| Hypothetical Protein RTG_01376 [Rhodotorula glutinis ATCC 204091]
Length = 1080
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 24/231 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG---RGG---------EE 48
+G T V+A V AE+ +P +P +G V + + SP A +E RGG E
Sbjct: 51 LGGTRVVAQVSAEIVKPLPDRPYEGFVNLVTEISPMASAAYEAGRLRGGACACDGVSKRE 110
Query: 49 LSAELSS------ALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLL 102
L++ + L LL +D +L +V G+ W + +D + +GNLL
Sbjct: 111 LTSTTARRASEDEVLMTRLLEKALRRSNTVDREALCIVAGQKVWSIRVDVHFLDDEGNLL 170
Query: 103 DALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH 162
D A AL + P V V E + +++ + P+ T G
Sbjct: 171 DCASIAAMTALRHFRKPDVTVVGEEVTVH----SMTERVPVPLAIHHSPMCLTFAFFGDD 226
Query: 163 Y--IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISV 211
++D + E + +++++N Q IC + K+GG L ++ +S+
Sbjct: 227 SLAVLDPSHLESQLCTGTLTLALNSQSEICVLSKQGGAPLGADEVIRAVSI 277
>gi|384248099|gb|EIE21584.1| 3'-5'-exoribonuclease/RNA binding-like protein [Coccomyxa
subellipsoidea C-169]
Length = 293
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 8/229 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +A +K + S+ QP +G +A+ ++ + A + E R G ++ + +Q
Sbjct: 65 IGNTTAMAGIKLQHFAISSDQPVEGTLAVNMEMAAFA--SSETRPGR--PSDAAQCVQEQ 120
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ AGA + L L + + W +++D V+ +DG LLD A AAL +P
Sbjct: 121 IRTALRTAGA-VKLEELAIDKSHA-WAVFLDIYVLDADGCLLDVCLLAAVAALLGLQLPR 178
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V V + +P + S + +F VP+ T I D T EEE+ ++S VS
Sbjct: 179 VEVNDQGQVVTKP-ISGSASDSRRFGLKAVPMALTCGLYSGSLIADPTSEEEALVASLVS 237
Query: 181 ISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDKLDSEIA 228
++ G + G+ K GG D ++L + ++LM L +A
Sbjct: 238 TIVDASGSLVGLYKAGGHATADEGLLLQCMEATKLRYKELMILLKQALA 286
>gi|163311555|gb|ABY26732.1| Rrp45p [Pichia kudriavzevii]
gi|163311560|gb|ABY26736.1| Rrp45p [Pichia kudriavzevii]
gi|163311565|gb|ABY26740.1| Rrp45p [Pichia kudriavzevii]
Length = 410
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 80/215 (37%), Gaps = 53/215 (24%)
Query: 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD 130
+DL SL ++ G+ CW + D ++ DGNL+DA A+ AL + P V +
Sbjct: 181 ALDLESLCIIAGQKCWAVRADVRFLNYDGNLVDAASIAVITALLHFRKPDVELVGSGEGT 240
Query: 131 EQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYI-------------------------- 164
E D E + +P+ T +
Sbjct: 241 ELIIYDEKQREMVPLSILHIPICVTFQFFSTESVERNIKGESLDSRSRSRQVKSNNGDEG 300
Query: 165 -----------------------VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLD 201
VDAT EEE ++++++N +C + K GG+ +D
Sbjct: 301 DDDLMDVDYEANDGPRASNEVVIVDATSEEELLSQGSMTVTLNSNKELCQISKSGGLNVD 360
Query: 202 PSVILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
+L+ +A+ +++DK +I AD+++
Sbjct: 361 SKKVLECCQIAS----KIVDKWTKQIKQVLADDEK 391
>gi|320166868|gb|EFW43767.1| opa-interacting protein 2 [Capsaspora owczarzaki ATCC 30864]
Length = 269
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 9/169 (5%)
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
+GA +DL+ L + G++CW LY+D + + GN DA AI AL +P+V +
Sbjct: 99 AGARGIVDLNELCITRGELCWCLYVDAVCLDDAGNSTDAALLAIVGALHALVLPAVTL-- 156
Query: 126 EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHY-IVDATLEEESQMSSAVSISI 183
+AAS +P + S Q P T + G + + D T EEE+ S AV+I
Sbjct: 157 DAASG-KPGFNPSGNS-TQLTLPATPFAATFSLFDGNAFTLADPTAEEEAMQSGAVTIVA 214
Query: 184 N---RQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229
+ + + K GG L + + IS A + L L +E+A+
Sbjct: 215 DVSSENPTLWTVHKPGGTPLSATALRQCISQAVERIKTLDALLQAELAS 263
>gi|71004918|ref|XP_757125.1| hypothetical protein UM00978.1 [Ustilago maydis 521]
gi|46096381|gb|EAK81614.1| hypothetical protein UM00978.1 [Ustilago maydis 521]
Length = 327
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 107/267 (40%), Gaps = 48/267 (17%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGG-EELSAELSSALQHCLL 62
T V V+A L P + +P +G + I D SP A ++ GG SA L L+
Sbjct: 56 TRVSTCVRATLMPPRSDRPYEGFLQITTDISPMAGIEYDSTGGGANSSARAREVLFDRLI 115
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDAL----------------- 105
+D +L VV G+ W++++ ++S G LDA
Sbjct: 116 DKAVRRTEAVDREALCVVAGEQVWNVHLTVHLLSDTGAALDAAVLCSMLSLRHFRRPDYS 175
Query: 106 --------------GAAIKAALSNT----------GIPSVHVAAEAASDEQPEVDISDEE 141
+ A+ +T +PS+ + AAS QPE D +D
Sbjct: 176 IENGNQVRLYSLDERVPVPLAIHHTPLCVTFAIFNHLPSI---STAASKTQPE-DRADSH 231
Query: 142 FLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLD 201
+ D + + ++D TL EES S +++ +N Q IC + K G +D
Sbjct: 232 LI--DPNAKASSPDTSTSTSVALLDPTLLEESLAQSKLTLVLNAQREICVLDKSYGSPID 289
Query: 202 PSVILDMISVANFVSRQLMDKLDSEIA 228
++L +I + +QL ++L+ ++
Sbjct: 290 AHLLLHLIQIGLIRIQQLTERLEHALS 316
>gi|389743838|gb|EIM85022.1| ribosomal protein S5 domain 2-like protein [Stereum hirsutum
FP-91666 SS1]
Length = 327
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 40/204 (19%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T+V+ +VK E+ S G++ V CSP+A P ++L + ++ L L
Sbjct: 60 GGTEVLGAVKLEVENVSGKT--DGRIVCSVSCSPSAYPHLSTGALDDLQYDYTTLLHQTL 117
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP-- 119
+ + S+L +++GK W L +D +V+S GN+ DAL A +AAL +T +P
Sbjct: 118 ------SHPSLHPSTLGIIKGKKAWLLSLDLVVLSDSGNVYDALFMAARAALWDTKVPRT 171
Query: 120 -SVHVAAEAASDEQ-----PEVDISDEEFLQFDTSGV----------------------- 150
S+ A A Q ++D+ ++ FDT V
Sbjct: 172 RSIEYRANAKGGAQFGGGRADMDVDEDNKSGFDTRQVAAATDFELEDYWDEGEVLNGREK 231
Query: 151 -PVITTLTKVGKHYIVDATLEEES 173
PV TL + + +DAT +EE+
Sbjct: 232 WPVCVTLNLLPPIHYLDATSQEEA 255
>gi|118388111|ref|XP_001027156.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89308926|gb|EAS06914.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 270
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 11/205 (5%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
S ++ +K E+G D+GK+ + ++ +A+ T + R E + L +
Sbjct: 55 NSVNIYTGIKVEIGETDN---DEGKIILKIE---SAQRTEQNRDQENHINSDKNTLIYLE 108
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISS-DGNLLDALGAAIKAALSNTGIPS 120
I SL +VE K CW L ID ++ S + L+ + A I AAL + +P
Sbjct: 109 ALLNKYLIQNICKKSLCIVEKKKCWILNIDVFILESVEIAYLNLMAAGINAALEDLVLPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTS---GVPVITTLTKVGKHYIVDATLEEESQMSS 177
+ + ++E E+ + +E+F F S +P I + ++ + + D T++E + +
Sbjct: 169 ISITHNNLTNE-DEITLIEEQFQSFSISRDFKMPKILLIGQIDRILVGDLTVDEYYSVEN 227
Query: 178 AVSISINRQGHICGMIKRGGVGLDP 202
+ ++ + IK+ G G P
Sbjct: 228 KYIVVVDVYENKIISIKKTGSGFLP 252
>gi|388851534|emb|CCF54724.1| probable RRP45-Exosome complex exonuclease [Ustilago hordei]
Length = 322
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 39/256 (15%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGG-EELSAELSSALQHCLL 62
T V SV+A L P + +P +G + I D SP A ++ GG SA L L+
Sbjct: 56 TRVSTSVRANLFPPRSDRPYEGFLQITTDISPMAGVEYDSTGGGANSSARAKEVLFDRLI 115
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
+D +L VV G+ W++++ ++S G LDA +L + P
Sbjct: 116 EKAIRRTEAVDREALCVVAGEQVWNVHLTVHLLSDTGAALDAAVLCSMLSLRHFRRPDYS 175
Query: 123 VAAEAASDEQPEVDISDEEF-LQFDTSGVPVITTLTKVG----------------KHYI- 164
+ + Q + SDE + P+ T H I
Sbjct: 176 I----ENGNQVRLYSSDERVPIPLAIHHTPLCVTFAIFNDLSTTTTATAKSQPDDDHLID 231
Query: 165 ----------------VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDM 208
+D TL EE+ S +++ +N Q IC + K G + P +LD+
Sbjct: 232 PTSASAAASTSSTVALLDPTLLEETLAHSKLTLVLNAQKEICVLDKSYGSPIAPQTLLDL 291
Query: 209 ISVANFVSRQLMDKLD 224
I+V ++L KL+
Sbjct: 292 INVGFRRIQELTKKLE 307
>gi|242088449|ref|XP_002440057.1| hypothetical protein SORBIDRAFT_09g025235 [Sorghum bicolor]
gi|241945342|gb|EES18487.1| hypothetical protein SORBIDRAFT_09g025235 [Sorghum bicolor]
Length = 183
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/26 (88%), Positives = 24/26 (92%)
Query: 69 GAGIDLSSLVVVEGKVCWDLYIDGLV 94
GA IDLSSL+VVEGKVCWDLYID LV
Sbjct: 158 GAAIDLSSLIVVEGKVCWDLYIDRLV 183
>gi|448522633|ref|XP_003868739.1| hypothetical protein CORT_0C04610 [Candida orthopsilosis Co 90-125]
gi|380353079|emb|CCG25835.1| hypothetical protein CORT_0C04610 [Candida orthopsilosis]
Length = 329
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 103/272 (37%), Gaps = 52/272 (19%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T + V A++ +P +P +G I + SP A F+ ++ L S +
Sbjct: 56 GKTKLSVRVTAQIVKPYPDRPFEGIFTINSEISPQASLKFDTTRAQQQDETLVSRI---- 111
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
L +DL SL ++ G W+L +D + DGNL+D A +L + P +
Sbjct: 112 LEKAIRRSNAVDLESLCIIAGDKVWELVVDLNFWNYDGNLIDVGCFATMLSLLHFRKPDI 171
Query: 122 HVAAEAASDEQPEVDISDEEFLQ---FDTSGVPVITTLTKVG------------------ 160
+ + E+ + DE Q VP+ T +
Sbjct: 172 SINGD-------EIVVHDENERQPVSLSILHVPICLTFSFYNLSSQEMNIKGGGATGATG 224
Query: 161 ----------------KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSV 204
+ + DA EES +++I++N+ + + K GGV +D
Sbjct: 225 ANDDTGVYQDGPDNDEEICLFDADALEESLRQGSLTITLNKNREVIQLSKNGGVPIDAQQ 284
Query: 205 ILDMISVANFVSRQLMDKLDSEIAAADADEDE 236
+LD+ F S +++D+L I +E
Sbjct: 285 LLDLC----FESMKIVDELTQLIKTEIKQHEE 312
>gi|289740849|gb|ADD19172.1| exosomal 3'-5' exoribonuclease complex subunit Rrp45 [Glossina
morsitans morsitans]
Length = 320
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Query: 41 FEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGN 100
FE EL+ +++ L+ ++ IDL SL V+ + W L +D V++ +GN
Sbjct: 6 FEAGRNCELTVQINRTLERTFKDSRA-----IDLESLCVISDERVWMLRVDLNVLNHEGN 60
Query: 101 LLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV- 159
L+D A AL++ P V V DE +++E L+ PV +
Sbjct: 61 LIDCCSVATLCALAHFRRPDVSV----IEDEIRIHTSAEKEPLKMVMHHYPVCVSYVVFD 116
Query: 160 -GKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVIL 206
G+ I D T+ EE + + IN G +C + G P+++L
Sbjct: 117 GGRIAIADPTVAEERTSDTQMIFGINSFGELCCLNLGGSSLTSPTLLL 164
>gi|255644374|gb|ACU22692.1| unknown [Glycine max]
Length = 170
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 73 DLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQ 132
DL L +V GK W Y+D + +DG L DA + AALS+ IPS+ A +D+
Sbjct: 3 DLKELSLVSGKAAWMAYLDIYCLDADGALFDAALLSAIAALSHLQIPSI-----AMNDDG 57
Query: 133 PEVDISDE------------EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V +SDE E + +P T + + D T EEES M + V+
Sbjct: 58 KIVLVSDEDGQKRAQEPVNKEKRKLTLRSIPFSLTCILHKNYILADPTAEEESIMETHVT 117
Query: 181 ISINRQGHICGMIKRGG 197
+ ++ G + + K GG
Sbjct: 118 VVLDTSGQLISLYKPGG 134
>gi|401403929|ref|XP_003881608.1| GF22565, related [Neospora caninum Liverpool]
gi|325116021|emb|CBZ51575.1| GF22565, related [Neospora caninum Liverpool]
Length = 552
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 118/303 (38%), Gaps = 81/303 (26%)
Query: 1 MGSTDVIASVKAELGRPSAMQP-DK---GKVAIFVDCSPTAEPT---------------- 40
+G T ++ V A P A+ P D+ G+++ V SP+ PT
Sbjct: 49 LGRTRCLSQVTAS---PFALLPTDRASDGEISFRVALSPSIPPTSAELAGQSALSASLAA 105
Query: 41 FEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGN 100
+ R S+EL L+ L +G +D +L + GK W + + V+ DGN
Sbjct: 106 ADTRRRSTKSSELERELERMLRRLLKDSGV-VDTEALCIQSGKWAWHVRVAVTVVEDDGN 164
Query: 101 LLDALGAAIKAALSNTGIPSVHVAAEAAS---DEQPEVDISDEEFLQFDTSGVPVITTLT 157
L D A+ AAL +H EA + D+ +D E L +P++ +
Sbjct: 165 LRDT---ALLAALCGL----MHFKKEAVTFDGDQAVFHRAADREPLPLCIHHLPILVSFA 217
Query: 158 --------------------------------KVGKH-----------YIVDATLEEESQ 174
GK Y+VD + EE+
Sbjct: 218 FLPTRGSLLNLSAPKGEGEDEEDALPEPYSSQTAGKREDERDDEDDLDYVVDPSALEEAT 277
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADE 234
+ VSI++ +QG ICGM K GG L S ++ + ++A +++L+ S + AA E
Sbjct: 278 LPGKVSIAVGKQGDICGMYKVGGPVLRFSHLIKLTNLATAKAKELL----SIVQAAVQQE 333
Query: 235 DES 237
ES
Sbjct: 334 RES 336
>gi|444317268|ref|XP_004179291.1| hypothetical protein TBLA_0B09550 [Tetrapisispora blattae CBS 6284]
gi|387512331|emb|CCH59772.1| hypothetical protein TBLA_0B09550 [Tetrapisispora blattae CBS 6284]
Length = 267
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 19/182 (10%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
++ I S+K+++ + +QPD V + +D S R + +SS L+
Sbjct: 56 SECIVSIKSKVIDHTVLQPDDSLVEVTLDIS-------GQRDDSPMVESISSLLREVY-- 106
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS-VH 122
ID SL + K + LYID LVIS+ N + + AI +AL++T +P V
Sbjct: 107 -----SKTIDKKSLTLT-TKYSFKLYIDVLVISTYSNPISLISMAIFSALNSTYLPKLVS 160
Query: 123 VAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSIS 182
+ +E P D + ++FD + P+I + VG + +D L E ++++ I+
Sbjct: 161 SFDDIEVEELPT--FHDYDMIKFDVNP-PLIFLVIIVGNNVFIDPALNESEIANNSLIIT 217
Query: 183 IN 184
N
Sbjct: 218 WN 219
>gi|357627282|gb|EHJ77019.1| hypothetical protein KGM_00061 [Danaus plexippus]
Length = 839
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G+T V+ +K EL +P A +PD G + V+ P F + + +S+ + +
Sbjct: 80 GNTTVVCGIKLELAKPKAEEPDVGFLITNVELLPLCSSKFRPGPPSDHAQVVSNVVSDIV 139
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
K ID+ L +V K+ W LY D + + DG+++DA + ++L +
Sbjct: 140 TNSKC-----IDMKDLCIVPDKLSWVLYCDMVCLDYDGSVVDACLITLMSSLKS 188
>gi|354547981|emb|CCE44716.1| hypothetical protein CPAR2_405200 [Candida parapsilosis]
Length = 330
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 111/270 (41%), Gaps = 45/270 (16%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEG-RGGEELSAELSSALQH 59
G+T + V A++ +P +P +G I + SP A F+ R ++ +S L+
Sbjct: 55 WGATKLSVRVTAQIVKPYPDRPFEGIFTINSEVSPQASLKFDTTRQQQQDEVLVSRILEK 114
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +S A +DL SL +V G W+L +D + DGNL+D A AL + P
Sbjct: 115 AI--RRSNA---VDLESLCIVAGDKVWELCVDLNFWNYDGNLIDVGCFATMLALLHFRKP 169
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-------------------- 159
+ + + + D+++ + + VP+ T +
Sbjct: 170 DISIHGDGGAVTVH--DVNERQPVSLSILHVPICLTFSFYNLSSQEMNIKGGGATGGAIE 227
Query: 160 ---GKHY----------IVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVIL 206
G ++ + DA EES +++I++N+ I + K GGV +D +L
Sbjct: 228 DGSGTYHDDLENQDEICLFDADALEESLRQGSLTITLNKNREIIQLSKNGGVPIDAQQLL 287
Query: 207 DMISVANFVSRQLMDKLDSEIAAADADEDE 236
+ F S +++D+L I +E
Sbjct: 288 GLC----FESVKIVDELTELIKTEIKQHEE 313
>gi|255725482|ref|XP_002547670.1| hypothetical protein CTRG_01977 [Candida tropicalis MYA-3404]
gi|240135561|gb|EER35115.1| hypothetical protein CTRG_01977 [Candida tropicalis MYA-3404]
Length = 299
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 106/244 (43%), Gaps = 33/244 (13%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIF-VDCSPTAEPTFEGRGGEELSAELSSALQHC 60
GST +I ++ A + P +P +G IF ++C E E L LS L+
Sbjct: 51 GSTKLIVNISARIIEPYKDRPFEG---IFTINCELPNNLKSEEIIDENL---LSRTLEKS 104
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ S +DL +L ++ G+ W++ ID ++ DGNL+D+ AI L +
Sbjct: 105 IRRSNS-----LDLENLCIIAGEKVWEIIIDLNYLNYDGNLIDSGCLAIMIGLLDFKKND 159
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--------------KVGKHYIVD 166
+ V + D+ + + ++ +P+ T + ++ + Y++D
Sbjct: 160 ISVTSNGGI---KIFDLDERQPIELSILHIPICLTFSFFNLGSKEMNLKSDEINEIYLLD 216
Query: 167 ATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSE 226
A EE ++I++N+ + + K GG+ +D +L + S +++DKL +
Sbjct: 217 ADSLEEYCRDGFLTITLNQNRDLIQLNKNGGLPIDAQQLLQLCH----NSMEIIDKLTNL 272
Query: 227 IAAA 230
I
Sbjct: 273 IKTT 276
>gi|428181405|gb|EKX50269.1| hypothetical protein GUITHDRAFT_104084 [Guillardia theta CCMP2712]
Length = 498
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 73 DLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE- 131
D S LV+ W L++ ++ +DGNLLDA A++AAL +T P + + D
Sbjct: 98 DYSFLVM-----SWLLHVKVHLLEADGNLLDASVMAVRAALRSTWFPRMIFKQDGPEDRI 152
Query: 132 QPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEE 172
E+D + + D+ P+ +L ++G +++D T EE
Sbjct: 153 SVEMDDDRSTYWRLDSINCPLTVSLYRLGSAWVIDPTEGEE 193
>gi|320586467|gb|EFW99137.1| 3 exoribonuclease family protein [Grosmannia clavigera kw1407]
Length = 389
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 26/169 (15%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP---------SVHVAAEAASDE 131
E K W LYID L +S DGN DA AA+ AAL +T +P V + + ++
Sbjct: 220 ELKAYWTLYIDLLFLSFDGNPFDAAWAAVVAALRDTQLPLARWDADRGEVVCSPQTETES 279
Query: 132 QPEVDISDEEFLQFDTSGVPVITT----------LTKVGKHYI-VDATLEEESQMSSAVS 180
+PE +++ L G+PV TT + G +I +D EE+Q V+
Sbjct: 280 EPETNVASSAPLTL--RGLPVATTAVVCVENKKKRQQGGARWILLDPDRLEENQCRETVT 337
Query: 181 ISINR----QGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ ++R Q + + K GGV + P + +++ A L + LDS
Sbjct: 338 VVVDRSDGSQTMVRALSKTGGVLVGPRELHALVAAAEKRWTALAEALDS 386
>gi|219129572|ref|XP_002184959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403454|gb|EEC43406.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 269
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 89/211 (42%), Gaps = 19/211 (9%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
T V + AEL P+ +P++G VA+ VD SP+A F + +L+ LL
Sbjct: 35 TRVSCTCTAELLPPNPDRPNEGMVALSVDLSPSASTAFRQAAPVTTGGSILRSLERVLL- 93
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
G +D +L V W L + V+ GNL+DA A AAL + P V +
Sbjct: 94 ----TGGALDTEALCVTPQYWVWKLSLAVTVLDDGGNLMDASVLAALAALRHYRKPHVEL 149
Query: 124 AAEAASDEQP----EVDISDEEFLQFDTSGVPVITTL---------TKVGK-HYIVDATL 169
AAE ++ P + D+ + L + + + L T K +VD
Sbjct: 150 AAEGSNSGVPPRWIQSDLKEPVPLPLHHTPLSISFALLPHDTAAQSTASAKVTLLVDPDA 209
Query: 170 EEESQMSSAVSISINRQGHICGMIKRGGVGL 200
EE +SI++N G +C + GG L
Sbjct: 210 REELVSVGTLSIAMNVHGEVCLLDFGGGCEL 240
>gi|380480855|emb|CCF42188.1| exosome complex exonuclease RRP43 [Colletotrichum higginsianum]
Length = 342
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 63/154 (40%), Gaps = 22/154 (14%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI-SDEEFLQ 144
W LYID IS DGN D AI AAL +T IP A D E+ I S +E
Sbjct: 194 WVLYIDIFFISFDGNPFDVAWTAILAALRDTTIPI------ARWDPDREMVICSRDEPKP 247
Query: 145 FDTSGVPV-----------ITTLTKVGKHY-IVDATLEEESQMSSAVSISINRQG---HI 189
G PV T GK + +VD EES ++ ++R G +
Sbjct: 248 LTLHGFPVACTAGVFAEKETTDRPSAGKFWTLVDLDTLEESLCDEQITAVVDRSGGDTKV 307
Query: 190 CGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ K GG L P +I + + VA Q+ +
Sbjct: 308 LSISKHGGTVLQPQLIREFVGVAERRWEQVWKAM 341
>gi|388582213|gb|EIM22518.1| ribosomal protein S5 domain 2-like protein [Wallemia sebi CBS
633.66]
Length = 422
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 26/231 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +IA VK + P + + G V +D +P + ++ E + LSS +
Sbjct: 205 LGNTTMIAGVKLKTALPDPNR-EAGYVVPNIDLNPISNSKYKPGPPSEEAQVLSSRINDV 263
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL SG ++ L + +GK W +YID + I+ DGN DA AI AAL NT +P
Sbjct: 264 LLS--SGV---LNQKDLTIEQGKAVWVVYIDVVCINFDGNAFDAALIAIVAALRNTRLPV 318
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL--TKVGKH---YIVDATLEEESQM 175
D + +++ E +++ VP+ T+ T G + D E+S
Sbjct: 319 TRY------DFDNDRVLANPE----ESTSVPLTKTIIPTSFGLFDGKLVTDLNDFEQSLA 368
Query: 176 SSAVSISINRQGHICGMIKRG---GVGLDPSVILDMISVANFVSRQLMDKL 223
S +++ IN G + M +G LD S LD+ A ++R+ D +
Sbjct: 369 HSRLTVVINEDGTLAHMSSQGRNMADNLDDS--LDLTQRAIKIARERYDAI 417
>gi|342186653|emb|CCC96140.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 280
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 21/208 (10%)
Query: 6 VIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGK 65
V SV G P QP++G++ + V + P F+ + ++ +AL+ +
Sbjct: 66 VSCSVSGLFGPPPPDQPEEGRLTVNV-----SAPFFQ----SHIMDQVGTALREVAWFVQ 116
Query: 66 SGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAA 125
S + +DL+ L ++ G+ CW L + +V+++DG L A A AA+ N +P +
Sbjct: 117 STITSCMDLTELSIISGEACWVLQTELVVLNADGGLRAAALHAAVAAMQNMLLPRSRL-- 174
Query: 126 EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK---HYIVDATLEEESQMSSAVSIS 182
P D+ + ++F T V V + K ++D EES + V++
Sbjct: 175 -------PNGDMVESRRIRFHTVPVAVTIGVYKASAADVRLLMDTNAAEESVVEGLVTVV 227
Query: 183 INRQGHICGMIKRGGVGLDPSVILDMIS 210
+ I + + G L ++++ IS
Sbjct: 228 LGDSDGIVALTQNGTYPLPSALLMGAIS 255
>gi|424819347|ref|ZP_18244456.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4_'5-way FS']
gi|326422439|gb|EGD71838.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4_'5-way FS']
Length = 156
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 19/130 (14%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
IDL+ LV+ EGK +Y+D + ++++GNL DA A A+ NT
Sbjct: 15 IDLTKLVIEEGKTVSFVYVDIVCLNNEGNLFDAANIAALRAILNT--------------- 59
Query: 132 QPEVDISDEEF-LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHIC 190
+ +++ +E F L D S + + T TK+ + D + EEE + +I ++ +
Sbjct: 60 KYKIEGKEETFTLPIDKSKLAISHTFTKINGNIFFDPSAEEEKTADARFTIGLSEK---I 116
Query: 191 GMIKRGGVGL 200
+++GG G+
Sbjct: 117 NSLQKGGDGM 126
>gi|71413321|ref|XP_808804.1| exosome-associated protein 2 [Trypanosoma cruzi strain CL Brener]
gi|70873085|gb|EAN86953.1| exosome-associated protein 2, putative [Trypanosoma cruzi]
Length = 278
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 24/201 (11%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
T V V G P P++G++ + V P F G ++ L +
Sbjct: 67 TCVNCIVTGVFGPPPPQHPEEGRLTVEV-----TAPFFPGYSAFQIEGTLHELARFV--- 118
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
+S + +DL+ L V+ G+ CW L ++ +V+++DG L A A AAL N +P +
Sbjct: 119 -RSTIISCLDLTELCVISGEACWVLRVELIVMNADGGLRAATLHAAVAALHNLTLPKARL 177
Query: 124 AAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK----HYIVDATLEEESQMSSAV 179
P D+ + L F +PV T+ G +++D EES +
Sbjct: 178 ---------PSGDVVESRCLCFHR--IPVAATIGLCGTAGSMQFLLDTNAAEESVADVLL 226
Query: 180 SISINRQGHICGMIKRGGVGL 200
++ I+ I + G L
Sbjct: 227 TVVIDETDGIVSFLHHGRFPL 247
>gi|407848156|gb|EKG03619.1| exosome-associated protein 2, putative,3' exoribonuclease, putative
[Trypanosoma cruzi]
Length = 278
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 24/195 (12%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAG 69
V G P P++G++ + V P F G ++ L + +S
Sbjct: 73 VTGVFGPPPPKHPEEGRLTVEV-----TAPFFPGYSAFQIEGTLHELARFV----RSTII 123
Query: 70 AGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAAS 129
+ +DL+ L V+ G+ CW L ++ +V+++DG L A A AAL N +P +
Sbjct: 124 SCLDLTELCVISGEACWVLRVELIVMNADGGLRAATLHAAVAALHNLTLPKARL------ 177
Query: 130 DEQPEVDISDEEFLQFDTSGVPVITTLTKVGK----HYIVDATLEEESQMSSAVSISINR 185
P D+ + + L F +PV T+ G +++D EES +++ I+
Sbjct: 178 ---PSGDVVESKCLCFHR--IPVAATIGLCGTADSMQFLLDTNAAEESVADVLLTVVIDE 232
Query: 186 QGHICGMIKRGGVGL 200
I + G L
Sbjct: 233 ADGIVSFLHHGRFPL 247
>gi|123974907|ref|XP_001314060.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121896083|gb|EAY01245.1| hypothetical protein TVAG_027130 [Trichomonas vaginalis G3]
Length = 263
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 48 ELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGA 107
E+ + + ++H L+ + ++ + ++ W +YID L++ + G + +A
Sbjct: 98 EICQVIKTTIKHFLVNSEV-----LEPNQFILFNSPYSWKIYIDVLILKAAGGVYEASML 152
Query: 108 AIKAALSNTGIPSVHVAA-EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVD 166
I++ L N P++ V E+A++ ++D S + +P + T I+D
Sbjct: 153 GIESCLQNITFPALIVTPGESANELHFDIDESKKAEHLIKVEKIPKLYTFAAYQDKLIID 212
Query: 167 ATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVI 205
T E + + S + I ++ G + GM G GL S++
Sbjct: 213 PTPAEVTSVQSLIVIGASKDGSMLGMNHFGESGLRESLL 251
>gi|357436289|ref|XP_003588420.1| Exosome complex exonuclease RRP43 [Medicago truncatula]
gi|355477468|gb|AES58671.1| Exosome complex exonuclease RRP43 [Medicago truncatula]
Length = 180
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+GST ++ ++K E+ PS PD+G +AI CSP P +S +LS
Sbjct: 69 IGSTTMLTAIKMEVMIPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEAEPVVSKQLSDT 128
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
+ + IDL L +V GK W Y+D + +DG+L D
Sbjct: 129 IT---------SSGMIDLRELSLVGGKAAWMAYLDIYCLDADGSLFD 166
>gi|85113698|ref|XP_964565.1| hypothetical protein NCU03159 [Neurospora crassa OR74A]
gi|28926352|gb|EAA35329.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 357
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI---SD 139
K W LYID L +S DGN DA A+ AAL +T +P +A D E + S+
Sbjct: 199 KAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLP------QARWDPDREAVVCSRSE 252
Query: 140 EEFLQFDTSGVPVITTLT----------------KVGKHYI-VDATLEEESQMSSAVSIS 182
E + D G+PV T T + +H+I +D EES V++
Sbjct: 253 EAKMALDVRGLPVACTATVFLEKEHGEDSGSSAERKSRHWILLDPDRLEESLCKETVTVV 312
Query: 183 INRQGH---ICGMIKRGGVGLDPSVILDMISVA 212
++ G + + K GG + ++ I VA
Sbjct: 313 VDCSGEETKVKSIEKHGGTVIGRELMRGFIGVA 345
>gi|429852255|gb|ELA27400.1| 3 exoribonuclease family protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 315
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI-SDEEFLQ 144
W LYID IS DGN DA A++ AAL +T IP A D E+ I S +
Sbjct: 167 WVLYIDIFFISLDGNPFDAAWASVLAALRDTTIPI------ARWDPDREMVICSRDNPKP 220
Query: 145 FDTSGVPVITTLTKV-----------GKHY-IVDATLEEESQMSSAVSISINRQGH---I 189
+G PV T GK + +VD EE V+ ++R G I
Sbjct: 221 LTINGFPVACTAGVFTGKETTDKPADGKFWTLVDPDTLEEGLCDEEVTAVVDRSGEETKI 280
Query: 190 CGMIKRGGVGLDPSVILDMISVA 212
+ K GG L P +I + + VA
Sbjct: 281 LAISKHGGTALQPQLIREFVGVA 303
>gi|302682326|ref|XP_003030844.1| hypothetical protein SCHCODRAFT_16010 [Schizophyllum commune H4-8]
gi|300104536|gb|EFI95941.1| hypothetical protein SCHCODRAFT_16010 [Schizophyllum commune H4-8]
Length = 341
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G T+V A+ K E+ ++ V V CSP A P ++L A+L+S L L
Sbjct: 62 GGTEVWAATKLEVV--DVADGERQGVVCSVTCSPQAYPHLTAPALDDLQADLTSLLDTTL 119
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
A + +SL ++ K W L +D +V+++ G++ DAL A +AAL +T +P
Sbjct: 120 ------AHPSLLPASLTIIPAKKAWLLALDCVVLAAAGSVPDALFMAARAALWDTRVPRT 173
Query: 122 H 122
Sbjct: 174 R 174
>gi|302854926|ref|XP_002958966.1| hypothetical protein VOLCADRAFT_108396 [Volvox carteri f.
nagariensis]
gi|300255681|gb|EFJ39971.1| hypothetical protein VOLCADRAFT_108396 [Volvox carteri f.
nagariensis]
Length = 516
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 96/235 (40%), Gaps = 19/235 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+GST V++ V A L P +P +G + V+ SP A P FE GR G + E Q
Sbjct: 54 LGSTRVLSVVTASLEVPFPDRPSEGPLRFNVEFSPMASPAFEPGRPGRQ--GEAWDPTQG 111
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG-- 117
LG L G C D +I L GA + AL
Sbjct: 112 LGLGLGRRRRFSELLRRRPSCRG--CEDAIQIARLIERG---LRQSGAVDQEALCVVAGR 166
Query: 118 IPSVHVAAEAASD---EQPEVDISDEEFLQFDTSGVPVITT--LTKVGKHYIVDATLEEE 172
P V V E+ +D PEV E L +PV T L + G +VD + EE
Sbjct: 167 KPEVEVGGESGTDILVHPPEV----REPLPLTIHHLPVAVTFGLFQGGDLLVVDPSWREE 222
Query: 173 SQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ S + ++ +N +C + K G+GL P + + +A + QL+ L + +
Sbjct: 223 AAASGSCTVVMNPGREVCCVHKADGIGLTPDQFMRCVRLAGDKAEQLVADLKAAL 277
>gi|424819697|ref|ZP_18244764.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidophilus ARMAN-5_'5-way FS']
gi|326422493|gb|EGD71890.1| Putative exosome complex RNA-binding protein [Candidatus
Parvarchaeum acidophilus ARMAN-5_'5-way FS']
Length = 253
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T VIA VK G P +P G + + + S G+ +++ +
Sbjct: 48 LGNTKVIAGVKVLNGTPFPDRPADGALIVNFELSELTS----NYPGDRINSSIE------ 97
Query: 61 LLGGKSGAGAG----IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+G + G IDLS L V EGK +Y+D + I+++GNL DA A A+ NT
Sbjct: 98 -VGRVTDRGIRESNLIDLSKLCVEEGKTVLFVYVDIVCINNEGNLFDAGNIAALRAILNT 156
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
S E E S L D + + + T TK+ D + EEE+
Sbjct: 157 ----------RYSIEGKEGKFS----LPIDRTKLAISHTFTKINGTIFFDPSAEEENVED 202
Query: 177 SAVSISINRQGHICGMIKRGGVGL 200
+ +SI I+ + +++GG G
Sbjct: 203 TKLSIGISDK---INSLQKGGDGF 223
>gi|309266685|ref|XP_001481151.2| PREDICTED: exosome complex component rrp43-like [Mus musculus]
Length = 418
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI---SD 139
K W LYID L +S DGN DA A+ AAL +T +P +A D E + S+
Sbjct: 260 KAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLP------QARWDPDREAVVCSRSE 313
Query: 140 EEFLQFDTSGVPVITTLT----------------KVGKHYI-VDATLEEESQMSSAVSIS 182
E + D G+PV T T + +H+I +D EES V++
Sbjct: 314 EAKMALDVRGLPVACTATVFLEKEHGEDSGSSAERKSRHWILLDPDRLEESLCKETVTVV 373
Query: 183 INRQGH---ICGMIKRGGVGLDPSVILDMISVA 212
++ G + + K GG + ++ I VA
Sbjct: 374 VDCSGEETKVKSIEKHGGTVIGRELMRGFIGVA 406
>gi|328866220|gb|EGG14605.1| Putative exosome complex exonuclease RRP45 [Dictyostelium
fasciculatum]
Length = 469
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 10/199 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V SV E+ P +P++G + S + + EL ++
Sbjct: 49 LGRTRVYTSVSCEVAEPRPERPNEGFFVFNTNISQMSNVEVDIGRSNPAELELGRLVERG 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L ++ ID +L +V G+ W + + ++ GNLLD ++ AL + P
Sbjct: 109 LKESRA-----IDTEALCIVAGQKVWRIVTNIHILDDCGNLLDCASISVITALLHFRKPD 163
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSAV 179
V + A+ E + E + PV T IVD +EE + +
Sbjct: 164 VTLVGNEATIHTLE----EREPVPLSIHHYPVSVTFGFFPDSLMIVDPDAKEEMVIDGKL 219
Query: 180 SISINRQGHICGMIKRGGV 198
S +N ICG+ K GG+
Sbjct: 220 SFLVNVHKEICGVSKSGGM 238
>gi|449512119|ref|XP_004175654.1| PREDICTED: exosome complex component RRP45-like, partial
[Taeniopygia guttata]
Length = 379
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQF 145
W + +D +++ DGN+ DA A AL + P V V E + PE + + +
Sbjct: 95 WQIRLDMHLLNHDGNITDAASIAGIVALCHFRRPDVSVQGEEVTVYTPE----ERDPVPL 150
Query: 146 DTSGVPVITTLT--KVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPS 203
+P+ + G + +VD T EE M + I++N+ IC + G V L P
Sbjct: 151 SIHHMPICVSFAFFHQGTYLLVDPTEREERVMDGLLVIAMNKHHEICTIQSSGVVMLLPD 210
Query: 204 VIL 206
IL
Sbjct: 211 QIL 213
>gi|303286137|ref|XP_003062358.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
gi|226455875|gb|EEH53177.1| 3' exoribonuclease [Micromonas pusilla CCMP1545]
Length = 301
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 32/220 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G T +A+ K E P PD G V + V+ C+ +A P GR EE S +
Sbjct: 54 IGRTTALAAAKLEPAPPEPTAPDVGVVEVTVELPPMCAASARP---GRPTEE-SQRCARR 109
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ L +DL L + G W + +D V+ DG +LDA A+ AL +
Sbjct: 110 IEDVLRDANV-----VDLRKLCIKRGVYAWRVCVDVYVLDHDGGILDAALCAVVGALKDA 164
Query: 117 GIPSVHVAAEAA-------SDEQPEVDISDEEFLQ------------FDTSGVPVITTLT 157
+P V V + +P +D + D + P+ T+
Sbjct: 165 KVPRVDVDDRGKLVWGGGERERRPGDADADADANGDGDASTSAAACVVDVASHPLSLTIG 224
Query: 158 KVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG 197
+ +VD EEE+ M S VS+ + G + + K GG
Sbjct: 225 QYDGKLVVDPNFEEEALMESVVSVVMREDGDLVCVSKPGG 264
>gi|164660754|ref|XP_001731500.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
gi|159105400|gb|EDP44286.1| hypothetical protein MGL_1683 [Malassezia globosa CBS 7966]
Length = 330
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 107/270 (39%), Gaps = 46/270 (17%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE--GRGGEELSAELSSALQ 58
+G T +ASV+A L P +P +G V I D SP A ++ G G S E +AL
Sbjct: 54 LGDTIAVASVEAALSEPRRDRPYEGLVQIHADISPMAGVEYDSGGMFGASESRE-RAALF 112
Query: 59 HCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGI 118
LL +D +L V+ GKV W + + +++ G +DA A AL
Sbjct: 113 ERLLERAVRNTEAVDREALCVIAGKVVWCVSLTVHLLADQGASVDAAVLASMLALRQYRR 172
Query: 119 PSVH----VAAEAASDEQPEVDIS---------------------DEEFLQFDTSGV--- 150
P V V +SDE+ V ++ + LQ + V
Sbjct: 173 PEVTVENGVVTVHSSDERVPVPLACHHVPLCVSYAVFLLEPKTEQEHALLQAQSLAVTAR 232
Query: 151 ------------PVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGV 198
P V ++D +L E++ S ++ +N Q IC + K GG
Sbjct: 233 QQQQLAMQVDDAPANAIAVPVT---LLDPSLLEKTLAHSTITFVMNAQREICVLDKAGGA 289
Query: 199 GLDPSVILDMISVANFVSRQLMDKLDSEIA 228
L IL ++ A ++L L+S++A
Sbjct: 290 SLPFQTILALLDSAAARVQELSTLLESKLA 319
>gi|294868324|ref|XP_002765481.1| exosome complex exonuclease rrp45, putative [Perkinsus marinus ATCC
50983]
gi|239865524|gb|EEQ98198.1| exosome complex exonuclease rrp45, putative [Perkinsus marinus ATCC
50983]
Length = 349
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRG------GEELSAE-- 52
+G T + A V +L P + +P +G+++I V+ P A P G G + E
Sbjct: 16 IGKTRIRAVVTGQLTSPPSNRPREGRLSINVEAGPMAAPAVLPSGNSSGLVGSAQTPEGI 75
Query: 53 -LSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKA 111
L + L+ L G + +D+ +L + G + W+L +D V+S +GN+ DA A
Sbjct: 76 SLCNQLERMLKGSNA-----VDVEALCIQSGSLVWELRLDVHVLSDNGNVGDAAAIASIV 130
Query: 112 ALSN 115
AL +
Sbjct: 131 ALRH 134
>gi|71663570|ref|XP_818776.1| exosome-associated protein 2 [Trypanosoma cruzi strain CL Brener]
gi|70884046|gb|EAN96925.1| exosome-associated protein 2, putative [Trypanosoma cruzi]
Length = 278
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 24/195 (12%)
Query: 10 VKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAG 69
V G P P++G++ + V P F G ++ L + +S
Sbjct: 73 VTGVFGPPPPQHPEEGRLTVEV-----TAPFFPGYSAFQIEGTLHELARFV----RSTII 123
Query: 70 AGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAAS 129
+ +DL+ L V+ G+ CW L ++ +++++DG L A A AAL N +P +
Sbjct: 124 SCLDLTELCVISGEACWVLRVELILMNADGGLRAATLHAAVAALHNLTLPKARL------ 177
Query: 130 DEQPEVDISDEEFLQFDTSGVPVITTLTKVGK----HYIVDATLEEESQMSSAVSISINR 185
P D+ + L F +PV T+ G +++D EES +++ I+
Sbjct: 178 ---PSGDVVESRCLCFHR--IPVAATIGLCGTAGSMQFLLDTNAAEESVADVLLTVVIDE 232
Query: 186 QGHICGMIKRGGVGL 200
I + G L
Sbjct: 233 TDGIVSFLHHGRFPL 247
>gi|145349570|ref|XP_001419203.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579434|gb|ABO97496.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 257
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 108/256 (42%), Gaps = 41/256 (16%)
Query: 1 MGSTDVIASVKAELGRP-SAMQPDKGKVAIFVDCSPTAEPTF--EGRGGEEL---SAELS 54
+G T AS A L RP SA +G + + + S A F EGR E + +L
Sbjct: 14 LGRTIACASTSAMLERPQSAGASSEGVLRVDCEFSSGACEGFAREGRANRETRQRAKDLG 73
Query: 55 SALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL- 113
+ L+ L ++ +D+ SL V+ GK W + +++ DGNL A A +L
Sbjct: 74 ALLERGLKDARA-----VDVESLCVLAGKRVWVVTCAVTILAHDGNLAGAASLAACGSLM 128
Query: 114 ----------SNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT---KVG 160
NTG +VH A D + + ++ F P+ +T +V
Sbjct: 129 TYRRPECAVDPNTGTVTVHSA-----DAREAIPLNMHHF--------PIASTYCFFDEVP 175
Query: 161 KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLM 220
+ D TLEEE +++ + +N +C + K G G+ + + A+ +R+
Sbjct: 176 GLAVADPTLEEEVTADASIVVVVNTHDEVCALSKTGN-GVPSEDLKRCVRNASRTAREWT 234
Query: 221 DKLDSEIAAADADEDE 236
+ L AAAD + D
Sbjct: 235 ELLKE--AAADFEADR 248
>gi|430812463|emb|CCJ30112.1| unnamed protein product [Pneumocystis jirovecii]
Length = 307
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 38/251 (15%)
Query: 3 STDVIASVKAELGRPSAMQPDK-----GKVAIFVDCSPTAEPTF-EGRGGEELSAELSSA 56
+T VI S+KAE+ + + GK+++ V+ P TF E E +SA L+ +
Sbjct: 54 NTSVIVSIKAEIINSVDLDILRKCKKGGKISVNVEIFPN---TFHENNDDEAMSAFLTQS 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
+ L +GI L L+V K W ++ID +VIS + + L AL A++ AL T
Sbjct: 111 ILQSL--------SGISLEHLLVTPTK-AWSIFIDAVVISPNNHALPALALAVRLALQTT 161
Query: 117 GIPSV--HVAAEAASDEQPEVDISDEEF-LQFD-TSGVP--------VITTLTKVGKHYI 164
+P + H+A + ++ DI +F + +D +GVP VI + VG +
Sbjct: 162 KLPHIIAHIAPGSIDTDKIAQDIGSGDFEVDYDLKNGVPIPDIEKVGVIIFVGNVGDNIF 221
Query: 165 VDATLEEESQMSSAVS--------ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVS 216
D + +E + ++ I+ R+ H K GL S+I M+ A +
Sbjct: 222 YDLSWDEIAVADGILAVGVLKDGQITYTRRIHASSNYKTSNYGLKSSIIKSMLEGAANMG 281
Query: 217 RQLMDKLDSEI 227
++L+ K + ++
Sbjct: 282 KELIQKSEEDV 292
>gi|296423271|ref|XP_002841178.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637413|emb|CAZ85369.1| unnamed protein product [Tuber melanosporum]
Length = 330
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDE 140
E K W LYID +VIS DGN+LDA A+I AAL +T +P +A D+ EV +
Sbjct: 177 EVKAYWVLYIDAVVISLDGNVLDAAWASILAALRSTRLP------QAYWDQDTEVVVCYP 230
Query: 141 EFLQF---DTSGVPVITTLT-------KVGKHYIVDATLEEESQMSSAVSISINRQGHIC 190
E ++ D G+ + K GK + D EE V + +G
Sbjct: 231 EVSRYKSLDVKGLAFTASFAVIDLGAGKGGKVILSDPDEFEEGVCGERVMVCA-LEGEKV 289
Query: 191 GMIKRGG 197
G I++GG
Sbjct: 290 GWIEKGG 296
>gi|347829018|emb|CCD44715.1| similar to 3' exoribonuclease family protein [Botryotinia
fuckeliana]
Length = 344
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF 142
K W LYID L IS DGN LDA AA+ +AL N +P H A+ E+ + D+E
Sbjct: 191 KAFWTLYIDILFISLDGNPLDAAWAAVVSALRNVRLPKAHWDADR------EMILCDDEV 244
Query: 143 ---LQFDTSGVPVITTL 156
+ G+P+ T
Sbjct: 245 SLSKKLTLRGLPIAATF 261
>gi|348678132|gb|EGZ17949.1| hypothetical protein PHYSODRAFT_502345 [Phytophthora sojae]
Length = 517
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 99/242 (40%), Gaps = 35/242 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEEL-------SAEL 53
+G T VI +V E+ P +P +G + V+ SP A P+FE +AEL
Sbjct: 58 LGRTRVIGNVHGEIVPPFPDRPTEGFLHFAVELSPMASPSFEAAASAGRGAASSVAAAEL 117
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAAL 113
+ ++ + ++ +D +L VV G+ W + V+ GNL+DA A AAL
Sbjct: 118 ARLVERGVRESRA-----LDTEALAVVAGEKVWAITCHVHVVDHGGNLVDAASLAAIAAL 172
Query: 114 SNTGIPSVHVAAEAAS---------DEQPEVDISDEE--------FLQ-----FDTSGVP 151
+ P V V A DE V +S FLQ + +G
Sbjct: 173 MHYRRPEVAVKEGTAGNGGVTVYSVDEHAAVPLSLHHIPISISFCFLQPAAKIQNNAGND 232
Query: 152 VITTLTKVGKHYI-VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMIS 210
+ G+ I +D T EE + +S + N +C + K GG + S +L +
Sbjct: 233 DDIDADEDGEPIIFMDPTDREERITDARMSFTFNSFRELCAVHKIGGAAISQSTVLRCAN 292
Query: 211 VA 212
VA
Sbjct: 293 VA 294
>gi|440298206|gb|ELP90846.1| exosome complex exonuclease RRP45, putative [Entamoeba invadens
IP1]
Length = 263
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 28/221 (12%)
Query: 23 DKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEG 82
D G + V+ A P F G E+ ++ LL ++ ID+ LV+V G
Sbjct: 60 DSGIFHVNVNFLQMANPDFLDAKGPRDLIEIGRVVERALLSTRA-----IDIDGLVLVRG 114
Query: 83 KVCWDLYIDGLVISSDGNLLD-----ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI 137
K+ W + + +I+ GNL+D A+ + + A I V + +P+
Sbjct: 115 KLVWSITVCVNIINDSGNLMDLVAMTAISSLLTALKREVEICGTDVKILTVEERKPK--- 171
Query: 138 SDEEFLQFDTSGVPVITTLTKVGKHY-IVDATLEEESQMSSAVSISINRQGHICGMIKRG 196
+P+ + + ++D + EE+ S ++I+IN++G +C +++
Sbjct: 172 ------PLSIHHIPITISFGITDEGIPLMDPSDREETICKSRLTIAINKEGEVCA-VQKS 224
Query: 197 GVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADEDES 237
G + +VI + +A +DK S IA D+S
Sbjct: 225 GTPIAMTVIQNCCDIA-------LDKAQSVIAFITEQVDKS 258
>gi|406607341|emb|CCH41294.1| hypothetical protein BN7_831 [Wickerhamomyces ciferrii]
Length = 264
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 22/169 (13%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
++ I S+KAE+ S V++ VD S R L S+L+ L
Sbjct: 56 SECIVSIKAEVVEKSTTN---ELVSVDVDVS-------GHRDDTSFILNLQSSLKTLYL- 104
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
K + ++L++ K + L+ID LVIS+ L + AL+NT +P +
Sbjct: 105 -KHISSESLNLTT------KFAYKLFIDVLVISNYSYPLTLMTFTSYLALNNTYLPKITS 157
Query: 124 AAEAAS-DEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEE 171
+ + +EQP D EF + P++ T+ +GK+YI+D +EE
Sbjct: 158 SVDDKEIEEQPT--FHDYEFNKL-IGQFPIVFTVAIIGKNYIIDPNIEE 203
>gi|300121304|emb|CBK21684.2| unnamed protein product [Blastocystis hominis]
Length = 273
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 88/207 (42%), Gaps = 10/207 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V A E+ + P++G I V+ +P + +++ EL L+
Sbjct: 50 IGDTKVCAITNCEIVSGYSDHPNEGLFTIHVNVTPMGGREYTTELSDDVRFELQRVLERS 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L + +D+ SL ++ G+ + ++ +I ++GN+ DA A ++L P
Sbjct: 110 LKDNNT-----VDVESLCIIPGEKVFSVHCYVNIIDNNGNIFDAAVLAATSSLCYFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHY-IVDATLEEESQMSSAV 179
+ P +++E + P+ + + ++D EE+ +
Sbjct: 165 YSINGTQVRIYAP----NEQEPVPLCLHYQPISISFCLLDSELTLLDPNEREEAVKEGMI 220
Query: 180 SISINRQGHICGMIKRGGVGLDPSVIL 206
S+ +N G +CG+ GG+ + S++L
Sbjct: 221 SLVLNAFGELCGVHFLGGIPVSESLLL 247
>gi|321478855|gb|EFX89812.1| hypothetical protein DAPPUDRAFT_40604 [Daphnia pulex]
Length = 279
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T V+A V + P + + ++G + I V+ S A FE GR G++ E++ ++
Sbjct: 50 LGNTRVMAQVSCSVQVPKSSRANEGMLFINVEMSTMAAEHFEAGRLGQQ-GIEVNRLVER 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLD 103
C+ + IDL SL ++ + W++ +D +++ +GNL+D
Sbjct: 109 CIKDSRC-----IDLESLCILVEEQAWEVRVDIHILNHEGNLID 147
>gi|154302252|ref|XP_001551536.1| hypothetical protein BC1G_09909 [Botryotinia fuckeliana B05.10]
Length = 189
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAE 126
K W LYID L IS DGN LDA AA+ +AL N +P H A+
Sbjct: 36 KAFWTLYIDILFISLDGNPLDAAWAAVVSALRNVRLPKAHWDAD 79
>gi|323355606|gb|EGA87426.1| Rrp45p [Saccharomyces cerevisiae VL3]
Length = 212
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SVR--RSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DITVHGE 172
>gi|207346511|gb|EDZ72988.1| YDR280Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 212
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SVR--RSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAE 126
+ V E
Sbjct: 166 DITVHGE 172
>gi|343426343|emb|CBQ69873.1| related to Exosome complex exonuclease RRP43 [Sporisorium reilianum
SRZ2]
Length = 323
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPTFEGRGGEELSAELSSA 56
+G+T IA++KAE+ P + +G + V+ CS +P G + L++ L +
Sbjct: 81 IGNTSCIAAIKAEVAAPQLSRSREGYLIPNVELPAVCSSKFKPGVPGDESQVLTSRLLAL 140
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
L + +D L + E K W LY+D I DGN +DA A AALSNT
Sbjct: 141 L---------NSSNVLDREQLCIHEAKAVWCLYLDISFICFDGNAMDAAVLAAVAALSNT 191
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQM 175
+ A+A+ D E + +P+ ++ + +H + D T E +
Sbjct: 192 KL------AKASYDPDTEQVRCSSDRTALLLQELPLASSFSIFENQHLLSDPTTFESALS 245
Query: 176 SSAVSISIN 184
SS ++I+++
Sbjct: 246 SSHLTIAVS 254
>gi|156056118|ref|XP_001593983.1| hypothetical protein SS1G_05411 [Sclerotinia sclerotiorum 1980]
gi|154703195|gb|EDO02934.1| hypothetical protein SS1G_05411 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 344
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF 142
K W LYID L IS DGN DA AA+ +AL N +P H D E+ + D+E
Sbjct: 191 KAFWTLYIDILFISLDGNPFDAAWAAVVSALRNVRLPKAHW------DVDREMILCDDEI 244
Query: 143 ---LQFDTSGVPVITT 155
+ + G+PV T
Sbjct: 245 SLSKRLNLRGLPVAVT 260
>gi|310797863|gb|EFQ32756.1| exosome complex exonuclease RRP43 [Glomerella graminicola M1.001]
Length = 339
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI-SDEEFLQ 144
W LYID +S DGN D AAI AAL +T IP A D E+ I S ++
Sbjct: 191 WVLYIDIFFVSFDGNPFDVAWAAILAALRDTTIPI------ARWDPDREMIICSRDDPKP 244
Query: 145 FDTSGVPVITTLTKV-----------GKHY-IVDATLEEESQMSSAVSISINR---QGHI 189
G PV T GK + +VD EES V+ ++R + +
Sbjct: 245 LTLHGFPVACTAGVFTGKETADRPAGGKFWTLVDPDRLEESLCEEEVTAVVDRSEGETKV 304
Query: 190 CGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
+ K GG L P +I + + VA Q + +
Sbjct: 305 LSISKHGGTVLQPPLIREFVGVAEQRWEQFRNAM 338
>gi|340052203|emb|CCC46474.1| RNasePH-like protein [Trypanosoma vivax Y486]
Length = 395
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 78 VVVEGKVCWDLYIDGLVISSDG-NLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVD 136
+ V G + + +D ++ +G NL A+ A+ AAL +PSV + EA+S EVD
Sbjct: 205 LYVGGGYAFRIDVDVHILQGNGGNLPAAVSIAVHAALKTIKLPSVTLH-EASSGFSLEVD 263
Query: 137 ISDEEFLQFDTSGVPVITT-LTKVGKHYIVDATLEEESQMSSAVSISINRQGHI 189
S D S +PV+ L +HY+VD T EE + + +++N G +
Sbjct: 264 HSRPYSRPMDWSQLPVVAMMLVSPTRHYVVDPTRLEELALPQQLLVAVNAPGQV 317
>gi|241952166|ref|XP_002418805.1| exosome complex exonuclease, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223642144|emb|CAX44110.1| exosome complex exonuclease, putative [Candida dubliniensis CD36]
Length = 331
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 32/222 (14%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGE---ELSAELSSAL 57
+G T V+ ++ + + P +P +G + I +C + + E ++ AL
Sbjct: 60 LGKTKVMVNITSRITEPYQDRPFEGIMTI--NCEIPNHIKIQSNDNDNEDEFINLINRAL 117
Query: 58 QHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTG 117
+ +S A +DL +L ++ G+ W+L ID V++ DGNL+D+ AI AL +
Sbjct: 118 DRAI--RRSNA---VDLENLCIIAGEKVWELIIDLQVLNYDGNLIDSGCLAIITALLDFK 172
Query: 118 IPSVHVAAEAASDEQP---EVDISDEE----FLQFDTSGVPVITT--LTKVGKH------ 162
P V + S + I D+E F++ +P+ T L +G
Sbjct: 173 KPDVTINNNNTSSNSSTSGNIIIHDDEMKRPFIELSILHIPICLTFSLFNLGSKETNLKT 232
Query: 163 -------YIVDATLEEESQMSSAVSISINRQGHICGMIKRGG 197
+++D + EES + +++N+ + + K GG
Sbjct: 233 NDIDQEIWLLDGDVMEESCRDGYLIMTMNQNHELIQLSKIGG 274
>gi|443919691|gb|ELU39792.1| exosome complex exonuclease rrp45 [Rhizoctonia solani AG-1 IA]
Length = 372
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 22/231 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GR---GGEELSAELSSA 56
MG T +A+V A + RP +P +G V I + SP A ++ GR G L+ +L
Sbjct: 132 MGKTSALANVSATMTRPRPDRPYEGTVTIHTELSPMAAAIYDAGRLFEGVRPLTEKL--- 188
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVV-EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSN 115
C+ S L +L G+ W L + V+S +GN+LD A AL +
Sbjct: 189 ---CVFSPDSRYAIDSPLLTLNPFGLGQKVWALRLTIHVLSDEGNMLDCACLAAVTALRH 245
Query: 116 TGIPSVHVAAEAA------SDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATL 169
P V V + PE + L P + T + + V
Sbjct: 246 FRRPDVEVVGDEVIIVGIRFSHDPE----ERAPLPLSLHHTPYCVSFTFLDEDLPVLDPN 301
Query: 170 EEESQMSSAVSISINRQGH-ICGMIKRGGVGLDPSVILDMISVANFVSRQL 219
E+Q+S + +C + K GG+ LD +L ++ +A +++L
Sbjct: 302 HLETQISLSSLSLALTPARELCTVQKAGGLALDADEMLRLVDIAAGRAKEL 352
>gi|453088579|gb|EMF16619.1| ribosomal protein S5 domain 2-like protein [Mycosphaerella
populorum SO2202]
Length = 331
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISD 139
V K W LY+D L ++ DGN LDA A+ AAL +T +P H A+ S + + D
Sbjct: 172 VVTKAYWTLYVDILCLALDGNALDAAWLAVYAALRDTRLPGAHWDADRESVVCSPLAL-D 230
Query: 140 EEFLQFDTSGVPVITTL------------TKVGKHYIVDATLEEESQMSSAVSISINRQG 187
E+ LQ +P+++T T + D EE + +S+ + G
Sbjct: 231 EKRLQI--RDLPIVSTFAIFTTASPLKLSTNPQNWILADPDTFEEELCNEVMSVVLQPSG 288
Query: 188 HICGMIKR----GGVGLDPSVILDMISVA 212
+I R GG +D + + +A
Sbjct: 289 EHGRLISRLESSGGASIDRQTMYTCLQLA 317
>gi|389646935|ref|XP_003721099.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae 70-15]
gi|86196361|gb|EAQ70999.1| hypothetical protein MGCH7_ch7g406 [Magnaporthe oryzae 70-15]
gi|351638491|gb|EHA46356.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae 70-15]
gi|440467025|gb|ELQ36266.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae Y34]
gi|440488969|gb|ELQ68653.1| exosome complex exonuclease RRP43 [Magnaporthe oryzae P131]
Length = 357
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 24/150 (16%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDE 140
E K W L+ID L IS DGN D A+ AAL +T +P+ A DE E+ +
Sbjct: 202 ETKAFWTLFIDVLFISFDGNPFDVAWTAVLAALRDTKLPA------AKWDEDREMVLCSR 255
Query: 141 E--FLQFDTSGVPVITTLTKV----------GKHY--IVDATLEEESQMSSAVSISINRQ 186
+ SG PV T V G Y +VD EE VS+ ++ +
Sbjct: 256 QAPAKPLGVSGFPVACTAAVVRRRRDDPDVAGDQYWVLVDPDRSEEELCDEFVSVVVDSE 315
Query: 187 G----HICGMIKRGGVGLDPSVILDMISVA 212
G I ++K GG I ++++A
Sbjct: 316 GGDGTKILSLLKLGGTSAGMEFINRLVTLA 345
>gi|237843665|ref|XP_002371130.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
gi|211968794|gb|EEB03990.1| exosome complex exonuclease, putative [Toxoplasma gondii ME49]
Length = 447
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 112/285 (39%), Gaps = 66/285 (23%)
Query: 1 MGSTDVIASVKAELGRPSAMQP-DK---GKVAIFVDCSPTAEPT---------------- 40
+G T ++ V A RP A+ P D+ G+++ V SP+ T
Sbjct: 49 LGHTRCVSQVTA---RPFALLPTDRASDGELSFRVSLSPSIPATSAELAGQVALAASLAA 105
Query: 41 -FEGRGGE--ELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISS 97
RGG+ EL EL L+ L + +D +L + GK W + + V+
Sbjct: 106 DSRRRGGKSSELERELERMLRRLLKDSRV-----VDTEALCIQSGKWAWHVLVAVTVLED 160
Query: 98 DGNLLDALGAAIKAALSNTGIPSVHVAAE-----AASDEQPEVDISDEEFLQFDTSGVPV 152
DGNL DA A L + +V V E AA+D +P + + +P
Sbjct: 161 DGNLRDAALLAALCGLMHFKKEAVTVDGETAVLHAAADREPLPLCIHHLPVLVSFAFLPP 220
Query: 153 ITTLTKV--------------GKHYIVD----------------ATLEEESQMSSAVSIS 182
T+L V G + D + EE+ + VSI+
Sbjct: 221 RTSLLNVSAPKTEGEEEENVSGSSFPSDLRNVHDDDDDVDYVVDPSALEEATLPGKVSIA 280
Query: 183 INRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+ +QG +CGM K GG L S ++ + +A +++L+ + + I
Sbjct: 281 VGKQGELCGMYKVGGPVLRFSHLMKLTKLAAAKAKELLSIVQAAI 325
>gi|156086782|ref|XP_001610798.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798051|gb|EDO07230.1| conserved hypothetical protein [Babesia bovis]
Length = 267
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/220 (19%), Positives = 94/220 (42%), Gaps = 18/220 (8%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQ-HCLL 62
T VI ++ + P+ P++G V I + T E + + +E A + LQ H L
Sbjct: 46 TVVITTIMFHVTSPNTNSPEEGNVEITLGSPFTLEDSDISQKRDERMAHILEMLQFHKQL 105
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVH 122
+ L ++ G+ W + I V+ G ++DA+ A+ A+ +P++
Sbjct: 106 FNRK---------LLCILSGQYVWTMRIHTTVLQRGGGVMDAVSVAVICAMLTVSVPNIR 156
Query: 123 -VAAEAASDEQPEVDISDEEFLQFDT------SGVPVITTLTKVGKHYIVDATLEEESQM 175
V + + ++ ++T +PV+ T+ ++G+ ++ EE +
Sbjct: 157 GVIKDELESSRTATNVRLRTMEGYNTDIEKLAREIPVLVTVARIGESHVWSVNQEEAACA 216
Query: 176 SSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFV 215
+++++ G+ C I+ G SV+ +I+ A +
Sbjct: 217 DGFLTVAVFPNGN-CAGIRAVGASFPLSVMPSLIAKARTI 255
>gi|443898173|dbj|GAC75510.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp43 [Pseudozyma
antarctica T-34]
Length = 318
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T IA+VKAE+ P + +G + V+ F+ G G E A++ ++
Sbjct: 75 IGNTSCIAAVKAEIASPQLSRSRQGYLIPNVELPAVCSSKFKAGAPGPE--AQVLTSRLL 132
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
LL + +D L + EG+ W LY+D I DGN LDA A AALSNT +P
Sbjct: 133 ALLNSSNV----LDRDQLCIQEGQAVWCLYLDISFICFDGNALDAAALATVAALSNTTLP 188
Query: 120 SVHVAAEAASDEQPEV---DISDEEFLQFDTSGVPVITTLTKV-GKHYIVDATLEEESQM 175
A D EV S + + +P ++ KH + D T E +
Sbjct: 189 ------NATYDPDSEVVRCSSSPADRVALQMGSIPFASSFAIFENKHLLSDPTAFEAALA 242
Query: 176 SSAVSISIN 184
SS V+I+++
Sbjct: 243 SSHVTIALS 251
>gi|294948902|ref|XP_002785952.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239900060|gb|EER17748.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 31/248 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPT-----FEGRGGEELSA 51
+GST V A V E+ P +P++GK+ + VD S P+ G +
Sbjct: 57 IGSTWVRAVVTGEVITPPPERPNEGKLFVSVDYGAVVSSATLPSGDSAGLPGTAQTPEAV 116
Query: 52 ELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKA 111
L + L+ L G K+ +D+ +L + G W + +D V + GN+ DA A A
Sbjct: 117 SLCNQLERMLKGSKA-----VDVEALCIAGGSRVWSVRLDVHVFTDAGNVGDAAATASVA 171
Query: 112 ALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH------YIV 165
AL + + +E + E V + E + +P+ T T V +
Sbjct: 172 ALMH------YRRSEVTTMEGSTVVREELEPMPLSIHHMPLPLTFTLVKSPDGTTSAVLA 225
Query: 166 DAT-LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISV----ANFVSRQLM 220
D T LEE + + + +N+ G +C ++K GG +++ I A V + +
Sbjct: 226 DPTSLEERLSGGALLVVVVNQYGELCSLLKPGGTSCPLPTVINCIHAAAGRAKEVHKMIA 285
Query: 221 DKLDSEIA 228
D L+ + A
Sbjct: 286 DALEKDTA 293
>gi|402074963|gb|EJT70434.1| exosome complex exonuclease RRP43 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 372
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 25/167 (14%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF 142
K W LYID L IS DGN D A+ AAL +T +P AE + D S
Sbjct: 207 KAYWVLYIDVLFISFDGNPFDVAWTAVVAALRDTRLPRAVWDAEREAAVCSRADGSPGRP 266
Query: 143 LQFDTSGVPVITTLTKV------------GKHYI-VDATLEEESQMSSAVSISINRQ-GH 188
L G+PV T G++++ +D EES V++ ++R G
Sbjct: 267 LS--VRGLPVACTAAVFRGKDDPDAASGDGQYWVLLDPDRLEESLCDEFVTVVVDRSVGA 324
Query: 189 ICG---------MIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSE 226
CG M+K GG I ++ VA R + D ++++
Sbjct: 325 DCGQEGEARIQSMLKAGGTAAGLDFIGRLVEVAETRWRDVRDAINTK 371
>gi|294952965|ref|XP_002787536.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
gi|239902542|gb|EER19332.1| Exosome complex exonuclease RRP45, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 31/248 (12%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVD----CSPTAEPT-----FEGRGGEELSA 51
+GST V A V E+ P +P++GK+ + VD S P+ G +
Sbjct: 57 VGSTWVRAVVTGEVITPPPERPNEGKLFVSVDYGAVVSSATLPSGDSAGLPGTAQTPEAV 116
Query: 52 ELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKA 111
L + L+ L G K+ +D+ +L + G W + +D V + GN+ DA A A
Sbjct: 117 SLCNQLERMLKGSKA-----VDVEALCIAGGSRVWSVRLDVHVFTDAGNVGDAAATASVA 171
Query: 112 ALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH------YIV 165
AL + + +E + E V + E + +P+ T T V +
Sbjct: 172 ALMH------YRRSEVTTMEGSTVVREELEPMPLSIHHMPLPLTFTLVKSPDGTTSAVLA 225
Query: 166 DAT-LEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISV----ANFVSRQLM 220
D T LEE + + + +N+ G +C ++K GG +++ I A V + +
Sbjct: 226 DPTSLEERLSGGALLVVVVNQYGELCSLLKPGGTSCPLPTVINCIHAAAGRAKEVHKMIA 285
Query: 221 DKLDSEIA 228
D L+ + A
Sbjct: 286 DALEKDTA 293
>gi|336464418|gb|EGO52658.1| hypothetical protein NEUTE1DRAFT_72508 [Neurospora tetrasperma FGSC
2508]
Length = 357
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 29/153 (18%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI---SD 139
K W LYID L +S DGN DA A+ AAL +T +P +A D E + S+
Sbjct: 199 KAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLP------QARWDPDREAVVCSRSE 252
Query: 140 EEFLQFDTSGVPVITTLT----------------KVGKHYI-VDATLEEESQMSSAVSIS 182
E + G+PV T T + +H+I +D EES V++
Sbjct: 253 EAKMALGVRGLPVACTATVFLEKEHGEDSGTSAERKSRHWILLDPDRLEESLCKETVTVV 312
Query: 183 INRQGH---ICGMIKRGGVGLDPSVILDMISVA 212
++ G + + K GG + ++ I VA
Sbjct: 313 VDCSGEETKVKSIEKHGGTVIGRELMRGFIGVA 345
>gi|255716660|ref|XP_002554611.1| KLTH0F09372p [Lachancea thermotolerans]
gi|238935994|emb|CAR24174.1| KLTH0F09372p [Lachancea thermotolerans CBS 6340]
Length = 263
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 9/147 (6%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEF 142
K + LYID LV+SS + L + A+ +AL++T +P + ++++ D D +F
Sbjct: 117 KYSFKLYIDVLVLSSFSHPLTLISFAVYSALNSTQLPKL-ISSDDDLDVAELPTFHDYDF 175
Query: 143 LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGV---- 198
++ + S VP++ TL GK+ +VD E ++ + ++ N G I+ G+
Sbjct: 176 VKLNVS-VPLLFTLAICGKNVLVDPASNESDVANNGILVTWN-NGKATAPIRTLGLNEDY 233
Query: 199 --GLDPSVILDMISVANFVSRQLMDKL 223
G+ P + D I + V+ +++ L
Sbjct: 234 VSGVSPQSLQDSIKMIEQVAPEVLQAL 260
>gi|225678125|gb|EEH16409.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 352
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID L+IS GNL DA A+ AAL N +P
Sbjct: 253 ETKAFWTLYIDVLIISHAGNLFDAAWGAVVAALHNMRLP 291
>gi|295662695|ref|XP_002791901.1| 3' exoribonuclease family protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279553|gb|EEH35119.1| 3' exoribonuclease family protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 436
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID L+IS GNL DA A+ AAL +T +P
Sbjct: 250 ETKAFWTLYIDVLIISHAGNLFDAAWGAVVAALHDTRLP 288
>gi|164657360|ref|XP_001729806.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
gi|159103700|gb|EDP42592.1| hypothetical protein MGL_2792 [Malassezia globosa CBS 7966]
Length = 313
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 11/181 (6%)
Query: 4 TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLG 63
T V ASV A + P+ +P++G + VD S P + EE L+ LQ L
Sbjct: 77 TLVTASVTARIAHPTLERPNEGFLIPSVDLSSLCSPLYNAGPPEEEGQVLTHNLQMFL-- 134
Query: 64 GKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHV 123
SG + S+L + +G W +Y+D + +S++G++LDA A AAL + +P +
Sbjct: 135 NNSGI---LPRSALCIEKGLAVWAIYVDVVCVSAEGSVLDAAALATVAALHDCQLPRID- 190
Query: 124 AAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIV-DATLEEESQMSSAVSIS 182
+ Q D +E L +P+ TL Y++ D T EES + ++ +
Sbjct: 191 --RFVNSSQAIFDPDTKERLPL--MNLPIFMTLGMYESTYVLADLTAFEESLCTGSIQVG 246
Query: 183 I 183
+
Sbjct: 247 L 247
>gi|342179892|emb|CCC89366.1| RNasePH-like protein [Trypanosoma congolense IL3000]
Length = 391
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 78 VVVEGKVCWDLYIDGLVI-SSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVD 136
+ V G + + +D V+ SS GNL + A+ A L +PSV EA++ EVD
Sbjct: 198 LYVGGGYAFRVDVDVHVLQSSGGNLASIISLAVHAVLKVVRLPSV-TLHEASAGFSLEVD 256
Query: 137 ISDEEFLQFDTSGVPVITT-LTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGM 192
S D S +P++ L +HY+VD T EE + + +++N G + M
Sbjct: 257 YSKPYASPVDWSRLPILNVILISPTRHYVVDPTRLEELALPQQLHVAVNNIGQVLHM 313
>gi|225558044|gb|EEH06329.1| 3' exoribonuclease [Ajellomyces capsulatus G186AR]
Length = 437
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID L+IS GNL DA AI AAL +T +P
Sbjct: 249 EIKAFWTLYIDVLIISHAGNLFDAAWGAIVAALRDTRLP 287
>gi|226287622|gb|EEH43135.1| 3' exoribonuclease family protein [Paracoccidioides brasiliensis
Pb18]
Length = 439
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
E K W LYID L+IS GNL DA A+ AAL N +P
Sbjct: 253 ETKAFWTLYIDVLIISHAGNLFDAAWGAVVAALHNMRLP 291
>gi|346977686|gb|EGY21138.1| exosome complex exonuclease RRP43 [Verticillium dahliae VdLs.17]
Length = 336
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 16/137 (11%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI-SDEEFLQ 144
W LYID IS DGN DA AA+ AAL NT +P+ A D+ E+ + S E
Sbjct: 194 WVLYIDIYFISFDGNPFDAAWAAMLAALRNTKLPA------ARWDQDREIVVCSRAEQKP 247
Query: 145 FDTSGVPVITTL-----TKVGKHY-IVDATLEEESQMSSAVSISINRQG---HICGMIKR 195
SG P+ T+ + G+ + +VD EE+ +++ +++ G + + K
Sbjct: 248 LTLSGFPIATSAAVFQGKEPGRFWTLVDPDRLEETLCRENLTVVVDKNGGETRLLSVSKH 307
Query: 196 GGVGLDPSVILDMISVA 212
GG L P ++ + ++VA
Sbjct: 308 GGTTLQPKLVGEFVAVA 324
>gi|240273287|gb|EER36808.1| 3' exoribonuclease [Ajellomyces capsulatus H143]
Length = 367
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K W LYID L+IS GNL DA AI AAL +T +P
Sbjct: 237 KAFWTLYIDVLIISHAGNLFDAAWGAIVAALRDTRLP 273
>gi|406862206|gb|EKD15257.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 344
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE-QPEVDISD 139
E K W LYID L IS DGN DA AA+ +AL + +P + A+ + V IS
Sbjct: 189 EVKAFWVLYIDILFISLDGNPFDAAWAAVVSALKDVRLPKAYWDADREMILCEDSVSISK 248
Query: 140 EEFLQFDTSGVPV-ITTLT---------KVGKHYI-VDATLEEESQMSSAVSISIN---R 185
+ L+ G+P+ +TTL + KH+I VD EE V+I ++ +
Sbjct: 249 KLTLR----GMPIAVTTLVFRAKEQIQGRDKKHWILVDPDTFEEGLCDENVTIVVDCGGK 304
Query: 186 QGHICGMIKRGGV 198
+ + G+ K GG
Sbjct: 305 KTKLLGISKSGGT 317
>gi|325095771|gb|EGC49081.1| 3' exoribonuclease [Ajellomyces capsulatus H88]
Length = 421
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K W LYID L+IS GNL DA AI AAL +T +P
Sbjct: 237 KAFWTLYIDVLIISHAGNLFDAAWGAIVAALRDTRLP 273
>gi|350296507|gb|EGZ77484.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 357
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI--- 137
E K W LYID L +S DGN DA A+ AAL +T +P +A D E +
Sbjct: 197 ELKAYWVLYIDLLFVSFDGNPFDAAWTAVMAALRDTKLP------QARWDPDREAVVCSR 250
Query: 138 SDEEFLQFDTSGVPVITTLT----------------KVGKHYI-VDATLEEESQMSSAVS 180
S+E G+PV T T + +H+I +D EES V+
Sbjct: 251 SEEAKTGLGVRGLPVACTATVFLEKEHGEDSGTSAERKSRHWILLDPDRLEESLCKETVT 310
Query: 181 ISINRQGH---ICGMIKRGGVGLDPSVILDMISVA 212
+ ++ G + + K GG + ++ I VA
Sbjct: 311 VVVDCSGEETKVKSIEKHGGTVIGRELMRGFIGVA 345
>gi|149240693|ref|XP_001526201.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450324|gb|EDK44580.1| hypothetical protein LELG_02759 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 341
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
GST + + A + +P +P +G I + SP A F+ ++ L S +
Sbjct: 52 FGSTKLSVRISASITKPYEDRPFEGIFVINSEISPMASLKFDTTRSQQQDEVLISRI--- 108
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DL +L ++ G+ CW++ D + DG ++D A ALS+ P
Sbjct: 109 -IEKSIRRSNALDLENLCIIAGEQCWEITADLNFWNYDGGMIDIGCFATMLALSHFKKPD 167
Query: 121 VHVA 124
V +
Sbjct: 168 VSIT 171
>gi|154280581|ref|XP_001541103.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411282|gb|EDN06670.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 440
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 83 KVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
K W LYID L+IS GNL DA AI AAL +T +P
Sbjct: 252 KAFWTLYIDVLIISHAGNLFDAAWGAIVAALRDTRLP 288
>gi|225712550|gb|ACO12121.1| Exosome complex exonuclease RRP45 [Lepeophtheirus salmonis]
Length = 210
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 19/171 (11%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+AS +G P + +P++G + I EP + E EL+ ++
Sbjct: 47 LGETRVLASTSCSVGEPQSSRPNEGVLKI------RMEPLAKRSMTTEALVELNRVIERV 100
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K +D+ SL + G+ W + ++ +++ GN D A AAL + P
Sbjct: 101 LKQSKC-----LDMESLCISSGEKVWIISLEMTILNDAGNAADCASVAGLAALCHFKRPD 155
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEE 171
V + A V I T+G+ + T + + Y++ +EE
Sbjct: 156 VTLKANTTPKVIKSVYI-------LSTNGIRFLLRFT-IIQFYLLLHFMEE 198
>gi|428673125|gb|EKX74038.1| exosome complex exonuclease rrp42, putative [Babesia equi]
Length = 282
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAE---AA 128
ID L ++ K W+L I ++ G+LLDA+ I AL + +PSV V + +
Sbjct: 106 IDKKILCIMPNKFVWNLKIHTTILQRGGSLLDAISIGIVTALRCSRLPSVAVMLKDEIES 165
Query: 129 SDEQPEVDISDEEFLQFDT----------------SGVPVITTLTKVGKHYIVDATLEEE 172
SD+ + + L++ T +P+ITT+ ++G + T EEE
Sbjct: 166 SDDDKNLQVKLSAGLEYITLYTKTLRLNTEVMDIAKKLPIITTVAQIGSKNVWGITKEEE 225
>gi|221484708|gb|EEE23002.1| exosome complex exonuclease, putative [Toxoplasma gondii GT1]
Length = 449
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 108/279 (38%), Gaps = 67/279 (24%)
Query: 1 MGSTDVIASVKAELGRPSAMQP-DK---GKVAIFVDCSPTAEPT---------------- 40
+G T ++ V A RP A+ P D+ G+++ V SP+ T
Sbjct: 49 LGHTRCVSQVTA---RPFALLPTDRASDGELSFRVSLSPSIPATSAELAGQVALAASLAA 105
Query: 41 -FEGRGGE--ELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISS 97
RGG+ EL EL L+ L + +D +L + GK W + + V+
Sbjct: 106 DSRRRGGKSSELERELERMLRRLLKDSRV-----VDTEALCIQSGKWAWHVLVAVTVLED 160
Query: 98 DGNLLDALGAAIKAALSNTGIPSVHVAAE-----AASDEQPEVDISDEEFLQFDTSGVPV 152
DGNL DA A L + + V E AA+D +P + + +P
Sbjct: 161 DGNLRDAALLAALCGLMHFKKEVLTVDGETAVLHAAADREPLPLCIHHLPVLVSFAFLPP 220
Query: 153 ITTLTKV--------------GKHYIVD-----------------ATLEEESQMSSAVSI 181
T+L V G + D + EE+ + VSI
Sbjct: 221 RTSLLNVSAPKTEGEEEENVSGSSFPSDLRNVHDDDDDDMDYVVDPSALEEATLPGKVSI 280
Query: 182 SINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLM 220
++ +QG +CGM K GG L S ++ + +A +++L+
Sbjct: 281 AVGKQGELCGMYKVGGPVLRFSHLMKLTKLAAAKAKELL 319
>gi|298713749|emb|CBJ33722.1| 3'-5'-exoribonuclease/ RNA binding [Ectocarpus siliculosus]
Length = 174
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V E+ P +P +G + V+ P A + GE+ ++ LS +
Sbjct: 55 LGRTRVLGVVTGEVVPPFPDRPTEGFLHFNVELGPMAAASV----GEQRNSPLSVEIARV 110
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ G + A +D +L ++ G+ W L D ++ GNL+DA A AAL + P
Sbjct: 111 IEIGVRDSQA-LDTEALCIIGGEKVWQLRCDVHILDHGGNLIDACTLATMAALRHFRRP 168
>gi|71416323|ref|XP_810197.1| ribosomal RNA processing protein 45 [Trypanosoma cruzi strain CL
Brener]
gi|70874694|gb|EAN88346.1| ribosomal RNA processing protein 45, putative [Trypanosoma cruzi]
Length = 334
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 26/252 (10%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELS--SALQH 59
G T V A++ EL P +P G + V +P E R +AEL +A
Sbjct: 62 GGTIVTAAIACELVEPFPYRPKHGIIDFSVR-----QPYTE-RDSSAKTAELKKLTAFLE 115
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ G G +D L V+ G+ W + +D V++ +GN+ D A A L + P
Sbjct: 116 RLIKG----GGVVDTEGLCVLPGRRVWSISVDVTVLNDEGNVTDVAVWATVAVLLHYRRP 171
Query: 120 SVHVAAEAA----SDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKH-------YIV 165
+ + ++ + E+ V +S F + P G+ +V
Sbjct: 172 ELTIRGDSVILHPTHERDPVPLSIHHTPLSFSFAITMAPGDRNRLARGRRDSQEALEVVV 231
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
D T E + SS+V +++N +G +C + K G + + + A+ ++ ++ +
Sbjct: 232 DPTFAEATAASSSVVVAVNAEGQVCSVSKSEGSCIHLDEVNHCMETASLLAPHILSLIRD 291
Query: 226 EIAAADADEDES 237
+AA D E+
Sbjct: 292 AMAAHDKRRQEA 303
>gi|412987809|emb|CCO19205.1| unknown protein [Bathycoccus prasinos]
Length = 417
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 86 WDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDE 131
W L +D LV+S DGN LDAL A K AL + +P V V +E
Sbjct: 219 WKLRMDFLVLSDDGNALDALAIAGKCALFDARLPRVRVKRRGEDEE 264
>gi|71655894|ref|XP_816503.1| ribosomal RNA processing protein 45 [Trypanosoma cruzi strain CL
Brener]
gi|70881635|gb|EAN94652.1| ribosomal RNA processing protein 45, putative [Trypanosoma cruzi]
Length = 334
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 26/251 (10%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELS--SALQH 59
G T V A++ EL P +P G + V +P E R +AEL +A
Sbjct: 62 GGTIVTAAIACELVEPFPCRPKHGIIDFSVR-----QPYTE-RDSSAKTAELKKLTAFLE 115
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
L+ G G +D L V+ G+ W + +D V++ +GN+ D A A L + P
Sbjct: 116 RLIKG----GGVVDTEGLCVLPGRRVWSISVDVTVLNDEGNVTDVAVWATVAVLLHYRRP 171
Query: 120 SVHVAAEAA----SDEQPEVDISDEEF---LQFDTSGVPVITTLTKVGKH-------YIV 165
+ + ++ + E+ V +S F + P G+ +V
Sbjct: 172 ELTIRGDSVILHPTHERDPVPLSIHHTPLSFSFAITMAPGDRNKLARGRRDSQEALEVVV 231
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
D T E + SS+V +++N +G +C + K G + + + + A+ ++ ++ +
Sbjct: 232 DPTFAEATAASSSVVVAVNAEGQVCSVSKSEGSCIHLNEVNHCMETASLLAPHILSLIRD 291
Query: 226 EIAAADADEDE 236
+AA D E
Sbjct: 292 AMAAHDKRRQE 302
>gi|67611512|ref|XP_667161.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54658268|gb|EAL36931.1| hypothetical protein Chro.80046 [Cryptosporidium hominis]
Length = 77
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 73 DLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
D S L ++E K+ W++YID ++S GN++D + AI AL T
Sbjct: 33 DFSKLTILENKLYWNIYIDATILSFGGNMVDWVTIAIHTALRTT 76
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,580,469,619
Number of Sequences: 23463169
Number of extensions: 150795199
Number of successful extensions: 349904
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 276
Number of HSP's that attempted gapping in prelim test: 347422
Number of HSP's gapped (non-prelim): 1290
length of query: 237
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 99
effective length of database: 9,121,278,045
effective search space: 903006526455
effective search space used: 903006526455
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 74 (33.1 bits)