BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026528
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3
Length = 291
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 9/227 (3%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS +A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL +L + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVAAEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSA 178
V V + + ++++SD+ + ++ VP I TL K+G ++VDATL+EE+ ++
Sbjct: 168 VRVLEDEEGSK--DIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLAS 225
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+ +S+ +G + M K G LDP I +M+ V + L L S
Sbjct: 226 LLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQS 272
>sp|Q9D0M0|EXOS7_MOUSE Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=2
SV=2
Length = 291
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 133/229 (58%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G TD++ VKAE+G P +P++G + FVDCS A P FEGRGG++L E+++ L
Sbjct: 53 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSANATPEFEGRGGDDLGTEIANTLYR- 111
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ KS +DL SL + + CW LY+D L++ GNL DA+ A+KAAL NT IP
Sbjct: 112 IFNNKSS----VDLRSLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPR 167
Query: 121 VHVA--AEAASDEQPEVDISDEEF--LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
V V E A D +++SD+ + ++ VP I TL K+G ++VDATL+EE+
Sbjct: 168 VRVLEDEEGAKD----IELSDDPYDCIRLSVENVPCIVTLCKIGCRHVVDATLQEEACSL 223
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
+++ +S+ +G + M K G LDP I +M+ + V + L L S
Sbjct: 224 ASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMESSKRVGKVLHVSLQS 272
>sp|Q54VM4|EXOS7_DICDI Putative exosome complex exonuclease RRP42 OS=Dictyostelium
discoideum GN=exosc7 PE=3 SV=1
Length = 324
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 135/274 (49%), Gaps = 52/274 (18%)
Query: 1 MGSTDVIASVKAELGR------PSAMQPDKGKVAIF-VDCSPTAEPTFEGRGGEELSAEL 53
+ T+V+ VKAE+ + Q D K +F V+C P+A P FEG+G E L+ EL
Sbjct: 51 LSQTEVLVGVKAEITHIQSEITSNLQQSDTSKRLVFSVNCCPSASPEFEGKGSEFLNIEL 110
Query: 54 SSALQHCLLGGKSGAGAGIDLSSLVV---------------------------------- 79
S L+ L + L++ ++
Sbjct: 111 SKQLER--LYSHPNVIKNLKLTNPIISNNNNNNNKIKEAEEGKEKEKEGDIITNSGDDNC 168
Query: 80 ---VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVD 136
V GK W LY+D +V+ SDGNL DAL A ++AL NT IP V A E+ +
Sbjct: 169 FSIVSGKYYWTLYVDAIVLDSDGNLFDALSIACRSALQNTRIP--RVKAIQGEYEEITFE 226
Query: 137 ISD--EEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIK 194
+SD E+ L VP+ TLTK+G +++D TL+EE M++ +++ +N +IC I+
Sbjct: 227 VSDDPEDTLSLSIDNVPICVTLTKIGNQFVIDTTLQEELCMNARLTVGVNSLANICS-IQ 285
Query: 195 RGGV-GLDPSVILDMISVANFVSRQLMDKLDSEI 227
+GG+ GLDP+ I MI+ A V ++++ +D +
Sbjct: 286 KGGIDGLDPTTINQMINTAKVVGVKILNIMDKTL 319
>sp|O26778|ECX2_METTH Probable exosome complex exonuclease 2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_682 PE=1 SV=1
Length = 271
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 113/225 (50%), Gaps = 12/225 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T +I VK ++G P P+ G + + P A PTFE +E S ELS + C
Sbjct: 55 LGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRC 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L ++EG W L++D +I DGNL DA A AAL +T IP
Sbjct: 115 IRESRM-----IDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIP- 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
AA E EV I+ E+ + ++ T K+G ++D +LEEE +++ +S
Sbjct: 169 ------AAEVEDGEVVINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARIS 222
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225
I + +G IC M K G L +L +S+A QL++ LD
Sbjct: 223 IGVTEEGSICAMQKGGEGPLTRDDVLKAVSIAVEKVPQLIEYLDK 267
>sp|Q8TYC2|ECX2_METKA Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0380 PE=3 SV=1
Length = 267
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 13/207 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T ++ VK E+GRP P++G +A+ + P A+P+FE +E + ELS +
Sbjct: 53 LGNTQLVVGVKLEVGRPYPDSPNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ + IDL L + EG+ CW ++D V+ DGNL DA +ALS T +P
Sbjct: 113 IRESEM-----IDLEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPK 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
AE DE V++ +E+ + P+ T+ KVG++ +VD LEEE M + ++
Sbjct: 168 ----AEVVDDE---VEVMEEDTEPLAINDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLT 220
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILD 207
+++ G +C +++G +G P +L+
Sbjct: 221 VTVTESGEVCA-VQKGELGDFPEHLLE 246
>sp|Q5JIR7|ECX2_PYRKO Probable exosome complex exonuclease 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1633 PE=3
SV=1
Length = 272
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 102/190 (53%), Gaps = 11/190 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +KAELG P PD+G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGDTQVLVGIKAELGEPFPDLPDRGVITTNVELVPLASPTFEPGPPDENAIELARVVDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ +DL LV+V GK+ ++ID V+ GNLLDA G AAL +T +P
Sbjct: 114 IRESQA-----VDLEKLVIVPGKLVRVIFIDVHVLDHGGNLLDASGIGAIAALLSTKLPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V+ ++E EV+I D E+ + VP+ T K+G +VD +L+EE M ++
Sbjct: 169 VNY-----NEETGEVEILD-EYEPLPVNHVPIPVTFAKIGNSIVVDPSLDEERVMDGRLT 222
Query: 181 ISINRQGHIC 190
I+ + GHI
Sbjct: 223 ITTDETGHIS 232
>sp|Q975G9|ECX2_SULTO Probable exosome complex exonuclease 2 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04420 PE=3 SV=1
Length = 275
Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 114/228 (50%), Gaps = 17/228 (7%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGDTMVLAGVKLEEEEPFPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DLS LV++ GK W ++D V+ GN+LDA A AAL NT +P
Sbjct: 118 LRDSKA-----VDLSKLVIIPGKKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + E V I EE PV+T T+ K+GK+ +VD +L+EES +
Sbjct: 173 VEI-------EGDNVKIIKEEKTDVTPIAYPVVTVTVAKIGKYLVVDPSLDEESIADVKI 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S + G I GM ++ G S+ L + VA ++R KL E+
Sbjct: 226 SFSYVQDGRIVGM-QKSNFG---SLSLQEVDVAESLARSASQKLFEEL 269
>sp|Q8U0M0|ECX2_PYRFU Probable exosome complex exonuclease 2 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1567 PE=3 SV=1
Length = 277
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +KA LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGNTQVLVGIKATLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+ GK+ ++ID V+ DGNL+DA+G AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIAPGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V ++E EV+I +E+ +P+ T K+G + +VD TLEEE M ++
Sbjct: 169 V-----LYNEETGEVEILEEKE-PLPVEKIPISVTFAKIGNYLVVDPTLEEEQIMDGRLT 222
Query: 181 ISINRQGHICGMIKRGG 197
I+ + GHI + K G
Sbjct: 223 ITTDETGHISAVQKSEG 239
>sp|C5A2B8|ECX2_THEGJ Probable exosome complex exonuclease 2 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2035 PE=3 SV=1
Length = 273
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 11/194 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ +K ++G P PD+G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGGTRVLVGIKVDVGEPFPDLPDRGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L LV+V GK+ ++ID V+ DGNL DA G A AAL T IP
Sbjct: 114 IRESQA-----VELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALMTTKIPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V ++E E+ I +E+ VP+ T K+G IVD L+EE+ M S ++
Sbjct: 169 VEY-----NEETGEI-IKLDEYEPLPVKHVPIPVTFAKIGSSIIVDPNLDEETVMDSRLT 222
Query: 181 ISINRQGHICGMIK 194
I+ + GHI + K
Sbjct: 223 ITTDETGHISAVQK 236
>sp|O59224|ECX2_PYRHO Probable exosome complex exonuclease 2 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1548 PE=3 SV=1
Length = 274
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 11/194 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+
Sbjct: 54 LGSTQVLVGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVTDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ ++ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 114 IRESRA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIASIAALLNAKVPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V ++E EV+I +E+ +P+ T K+G +VD +LEEE M ++
Sbjct: 169 VE-----YNEETGEVEILEEKE-PLPVERIPIPVTFAKIGNILVVDPSLEEELVMDGRLT 222
Query: 181 ISINRQGHICGMIK 194
++ + GHI + K
Sbjct: 223 VTTDETGHISAVQK 236
>sp|B6YSE7|ECX2_THEON Probable exosome complex exonuclease 2 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0031 PE=3 SV=1
Length = 272
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 11/197 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ +K ++G P P+KG + V+ P A P+FE +E + EL+ +
Sbjct: 54 LGNTQVLVGIKVDMGEPFPDLPEKGVITTNVELVPLASPSFEPGPPDERAIELARVVDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ++L LV+V GK+ ++ID V+ DGNLLDA G AAL + +P
Sbjct: 114 I--RESGA---VELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALMSAKMPK 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
V +E EV I D E+ S +P+ T+ KVG + +VD L+EE M ++
Sbjct: 169 V-----VYDEESGEVQILD-EYEPLPVSKMPIPVTIAKVGGNLLVDPNLDEELVMDGRIT 222
Query: 181 ISINRQGHICGMIKRGG 197
I+ + G I + K G
Sbjct: 223 ITTDENGMISSVQKSEG 239
>sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1
Length = 276
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI +KAE G P PDKG V VD SP F G GEE A+++S
Sbjct: 53 LGNTTVICGIKAEFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + ++ DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSCLNIRTH--PVATSFAVFDDTLLIVDPTEEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
+++ ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTVVMDEEGRLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1
Length = 276
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE PS PDKG V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEE--AQVASQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNIRTH--PVATSFAVFDDTLLIVDPTGEEEHLATGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR-----QLMDKL 223
++I ++ +G +C + K GG GL + + D +S A V+R +LMD++
Sbjct: 222 LTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRA--VTRHKEVKKLMDEV 269
>sp|Q9D753|EXOS8_MOUSE Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=2 SV=1
Length = 276
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 13/229 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
+G+T VI VKAE P PD+G V VD P F G GEE A+++S
Sbjct: 53 LGNTTVICGVKAEFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEE--AQVTSQF-- 108
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ I L + GK+ W LY D + + DGN+LDA A+ AAL N +P
Sbjct: 109 --IADVVDNSQVIKKEDLCISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLP 166
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH-YIVDATLEEESQMSSA 178
V + E A EV++ + +L T+ PV T+ IVD T EEE +
Sbjct: 167 EVTINEETA---LAEVNLKKKSYLNVRTN--PVATSFAVFDDTLLIVDPTGEEEHLSTGT 221
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++ + G +C + K GG GL + + D +S A +++ LD I
Sbjct: 222 LTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVI 270
>sp|Q0W2Y7|ECX2_UNCMA Probable exosome complex exonuclease 2 OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_09920 PE=3 SV=1
Length = 260
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 19/224 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G + V+ VK + G P PD G + ++ P A PTFE E + EL+ +
Sbjct: 53 IGDSQVVVGVKIQPGEPFPDTPDSGVIITNLELVPLASPTFESGPPREDAIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA IDLS L + G+ W ++ID V+ DGNL+DA AAL T IP+
Sbjct: 113 VR--ESGA---IDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPN 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
E ++ + VP+ T +G ++D +L+EES ++
Sbjct: 168 SKFGL--------------GEDVKLPLNDVPIGVTAVNIGGAIMLDPSLDEESVAPCKLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224
+ N++G I GM K G L P I +I +A + L +KL+
Sbjct: 214 VITNKEGAISGMQKSGVGTLTPDQINHIIRLAKEKANVLREKLE 257
>sp|Q9V118|ECX2_PYRAB Probable exosome complex exonuclease 2 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06110 PE=1 SV=1
Length = 274
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 13/198 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+GST V+ +K LG P P+ G + V+ P A PTFE +E + EL+ +
Sbjct: 54 LGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRG 113
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K+ ++L +V+V GK+ ++ID V+ DGNL+DA+G A AAL N +P
Sbjct: 114 IRESKA-----LNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPK 168
Query: 121 VHVAAEAASDEQPEVDISDE-EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
V E EV+ DE E L + VPV T K+G +VD +L+EE M +
Sbjct: 169 VRYNEETG-----EVETLDETEPLPVEKIPVPV--TFAKIGNILVVDPSLDEELVMDGKI 221
Query: 180 SISINRQGHICGMIKRGG 197
+I+ + GHI + K G
Sbjct: 222 TITTDETGHISAVQKSEG 239
>sp|C3MVG5|ECX2_SULIM Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=M1425_1407 PE=3 SV=1
Length = 275
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + ++ E + PV+T ++ KV K+ IVD L+EES M + V
Sbjct: 173 VEQDSNGFR-------VNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKV 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S I G+ K G + I + A V+ +L+++L ++
Sbjct: 226 SFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQL 273
>sp|C3N5R4|ECX2_SULIA Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.16.27) GN=M1627_1457 PE=3 SV=1
Length = 275
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + ++ E + PV+T ++ KV K+ IVD L+EES M + V
Sbjct: 173 VEQDSNGFR-------VNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKV 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S I G+ K G + I + A V+ +L+++L ++
Sbjct: 226 SFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQL 273
>sp|C3NED0|ECX2_SULIY Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=YG5714_1402 PE=3
SV=1
Length = 275
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + ++ E + PV+T ++ KV K+ IVD L+EES M + V
Sbjct: 173 VEQDSNGFR-------VNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKV 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S I G+ K G + I + A V+ +L+++L ++
Sbjct: 226 SFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQL 273
>sp|C3MQ47|ECX2_SULIL Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=LS215_1502 PE=3 SV=1
Length = 275
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + ++ E + PV+T ++ KV K+ IVD L+EES M + V
Sbjct: 173 VEQDSNGFR-------VNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKV 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S I G+ K G + I + A V+ +L+++L ++
Sbjct: 226 SFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQL 273
>sp|C4KHE3|ECX2_SULIK Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=M164_1401 PE=3 SV=1
Length = 275
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + ++ E + PV+T ++ KV K+ IVD L+EES M + V
Sbjct: 173 VEQDSNGFR-------VNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKV 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S I G+ K G + I + A V+ +L+++L ++
Sbjct: 226 SFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQL 273
>sp|C3NHC2|ECX2_SULIN Probable exosome complex exonuclease 2 OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=YN1551_1441 PE=3
SV=1
Length = 275
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + ++ E + PV+T ++ KV K+ IVD L+EES M + V
Sbjct: 173 VEQDSNGFR-------VNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKV 225
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
S S I G+ K G + I + A V+ +L+++L ++
Sbjct: 226 SFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQL 273
>sp|Q9UXC0|ECX2_SULSO Probable exosome complex exonuclease 2 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0732 PE=1 SV=1
Length = 275
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A K E+ +P P++G + + V+ P A TFE +E + EL+ +
Sbjct: 58 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K+ +DL+ LV+ GK W +++D V+ GN+LDA A AAL NT +
Sbjct: 118 LRDSKA-----LDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYK 172
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT-TLTKVGKHYIVDATLEEESQMSSAV 179
V + S ++ E + PV+T ++ KV K+ +VD L+EES M + +
Sbjct: 173 VEQHSNGIS-------VNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKI 225
Query: 180 SISINRQGHICGMIKRG 196
S S I G+ K G
Sbjct: 226 SFSYTPDLKIVGIQKSG 242
>sp|O74918|RRP45_SCHPO Exosome complex component rrp45 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp45 PE=3 SV=1
Length = 291
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 106/212 (50%), Gaps = 19/212 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEE---LSAELSSA 56
G T V+A + E+ +P +P G +I + +P A FE GR ++ +S + A
Sbjct: 51 FGHTRVMARITTEITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKA 110
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++ +S A +D SL ++ G+ CW + I+ DGNL+DA A+ AAL +
Sbjct: 111 VR------RSNA---LDTESLCIISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHF 161
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV--GKHYIVDATLEEESQ 174
P + V E + E + + +P+ T + G+ IVDATLEEE
Sbjct: 162 RRPELTVVGEEVTVHPVEERVP----VPLSILHMPICVTFSFFNNGELAIVDATLEEEDL 217
Query: 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVIL 206
+ +++I++N+ +C + K GG+ +DPS I+
Sbjct: 218 CNGSMTITLNKNREVCQIYKAGGIIIDPSKII 249
>sp|Q9HIP1|ECX2_THEAC Probable exosome complex exonuclease 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1294 PE=3 SV=2
Length = 260
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 21/199 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+A VK E G P PD+G + V+ P A P+FE +L+ E+S +
Sbjct: 56 LGNTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRG 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I LV+ +GK W +++D V+ DGNL+DA A AAL N +P+
Sbjct: 116 IRESKM-----ISPEKLVIEQGKKVWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPA 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ E D + S P+ T+ K+G + D +LEE+ ++
Sbjct: 171 ---SKEGGED------------FKLPVSSTPISVTMVKIGDTLVCDPSLEEDQICGGRIT 215
Query: 181 ISINRQGHICGMIKRGGVG 199
++ GHI M ++G +G
Sbjct: 216 VTTTEDGHIRAM-QKGEIG 233
>sp|O29756|ECX2_ARCFU Probable exosome complex exonuclease 2 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0494 PE=1 SV=1
Length = 259
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 19/223 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ VK + G P PD+G + + + P A PTFE +E S EL+ +
Sbjct: 53 LGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRG 112
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +DLS LV+ EG+ W +++D + DGNLLDA A AAL NT +P+
Sbjct: 113 I-----RESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPA 167
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
D+ ++ L +PV T VG Y+VD + EE S + ++
Sbjct: 168 ER------------FDLGEDYLLP--VRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLT 213
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
I+ ++ ++ M K GG LD + +++ V+ +R+L +K
Sbjct: 214 ITTDKDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLREKF 256
>sp|Q97BZ4|ECX2_THEVO Probable exosome complex exonuclease 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0311 PE=3 SV=1
Length = 260
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 21/200 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+A VK E G P PD+G + V+ P A P+FE +L+ E+S +
Sbjct: 56 LGKTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRG 115
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ K I LV+ +GK W +++D V+ DGNL+DA A +AL N +P+
Sbjct: 116 IRESKM-----ISPDKLVIEQGKKVWIVFLDINVLDYDGNLIDACTIAAVSALRNAIVPA 170
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ E D + P+ T+ K+G + D +LEE+ ++
Sbjct: 171 ---SREGGED------------FKLPVVNTPISVTMVKIGDTLVCDPSLEEDQICGGRIT 215
Query: 181 ISINRQGHICGMIKRGGVGL 200
++ GHI M ++G +G+
Sbjct: 216 VTTTEDGHIRAM-QKGEIGV 234
>sp|Q9YC05|ECX2_AERPE Probable exosome complex exonuclease 2 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1445 PE=3 SV=1
Length = 276
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 12/228 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T VIA VKA +G P P++G + + + P A P FE +E + EL+ +
Sbjct: 58 LGKTQVIAGVKAGVGAPFKDTPNQGVLTVHAEFVPLASPVFEPGPPDENAIELARVVDRS 117
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L GA +DL SLV+ G+ W L++D +I DGNL DA A A L +P
Sbjct: 118 L----REVGA-VDLESLVIRPGEKVWVLWVDLYIIDHDGNLFDASMLATMAVLLTARLPR 172
Query: 121 VHVAAEAASDEQPEVDISDE-EFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
E E+ IS E E + V T K+ ++ +VD +EEE+ +
Sbjct: 173 YE------ESETGEIIISKEGEGEELKVKTRVVTVTTAKIDRYIVVDPNIEEEAVSDVRL 226
Query: 180 SISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227
+++ G I G+ K G L + I MI + S+ L+ I
Sbjct: 227 VTAVDENGRIVGLQKTGMGSLTEADIETMIGYSLEASKVYFKALEEAI 274
>sp|Q8ZVN0|ECX2_PYRAE Probable exosome complex exonuclease 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2206 PE=3 SV=1
Length = 274
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 18/188 (9%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSA---- 56
+G T V+A VK LG+P PD+G + + + P A P E +E + EL+
Sbjct: 59 LGKTHVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRG 118
Query: 57 LQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNT 116
++HC +D L V EG + L+ID VI+ DGNL+D A AAL NT
Sbjct: 119 IRHC---------GYVDFKKLAV-EGGKAYVLWIDLYVINDDGNLIDVANLASVAALKNT 168
Query: 117 GIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMS 176
+P V V EA ++D +++ L D S P+ ++ K+G +D T EEE +
Sbjct: 169 QLPVV-VKDEAGV---VKLDRNNKAPLPVDISKAPIAVSVGKIGNVLFLDPTFEEELSLD 224
Query: 177 SAVSISIN 184
++ + +
Sbjct: 225 GRITFTFS 232
>sp|Q8PTT7|ECX2_METMA Probable exosome complex exonuclease 2 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2624 PE=3 SV=1
Length = 266
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 106/212 (50%), Gaps = 19/212 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 55 LGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W ++ID ++++DGN++DA A AAL T +P
Sbjct: 115 I--RESGA---IDIKKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVP- 168
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+EQ + E + +PV TL K+G +VD +L+EE+ + ++
Sbjct: 169 ---------NEQQGLG----ENVPLAMKEMPVGITLAKIGSKLMVDPSLDEEAVCETKLT 215
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
I + G + GM K G V L + + + I +A
Sbjct: 216 IVSSSDGSVAGMQKMGPVPLTEAELFEAIDMA 247
>sp|Q8TGX5|ECX2_METAC Probable exosome complex exonuclease 2 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_1776 PE=3 SV=1
Length = 266
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G+T V+ VK + G P D+G + ++ +P A P FE E + E++ +
Sbjct: 55 LGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRG 114
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
+ +SGA ID+ L + G+ W ++ID V++ DGN++DA A AAL T +P+
Sbjct: 115 I--RESGA---IDIKKLCITVGESVWIVFIDVHVLNDDGNIIDASCLAAIAALMTTMVPN 169
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVS 180
+ ++ P +PV T+ K+G +VD +L+EE+ + ++
Sbjct: 170 EQ---QGLGEDVP-----------LAMKEMPVGITIAKIGSKLMVDPSLDEEAVCETKLT 215
Query: 181 ISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
I + G + GM K G L + + + I +A
Sbjct: 216 IVSSSDGSVAGMQKMGISPLTEAELFEAIDLA 247
>sp|Q9JHI7|EXOS9_MOUSE Exosome complex component RRP45 OS=Mus musculus GN=Exosc9 PE=2 SV=1
Length = 438
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTIQSSGGIML 242
>sp|Q4QR75|EXOS9_RAT Exosome complex component RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2
SV=1
Length = 437
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 11/202 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V E + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGEEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGL 200
+ I++N+ IC + GG+ L
Sbjct: 221 LVIAMNKHREICTIQSSGGIML 242
>sp|Q06265|EXOS9_HUMAN Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3
Length = 439
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ ++ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V + + PE + + + +P+ + + G + +VD EE M
Sbjct: 165 VSVQGDEVTLYTPE----ERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>sp|Q3SWZ4|EXOS9_BOVIN Exosome complex component RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1
Length = 440
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHC 60
+G T V+ V EL P + +G + ++ S A P FE +L +L+ L+ C
Sbjct: 50 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERC 109
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
L K ID SL VV G+ W + +D +++ DGN++DA A AL + P
Sbjct: 110 LRNSKC-----IDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPD 164
Query: 121 VHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT--KVGKHYIVDATLEEESQMSSA 178
V V DE + + + + +P+ + + G + +VD + EE M
Sbjct: 165 VSVQG----DEVTLYTLEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPSEREERVMDGL 220
Query: 179 VSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
+ I++N+ IC + GG+ L +L +A
Sbjct: 221 LVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 254
>sp|Q10205|RRP43_SCHPO Exosome complex component rrp43 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp43 PE=3 SV=1
Length = 270
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 90/216 (41%), Gaps = 20/216 (9%)
Query: 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCL 61
G + +KAE+ P P++G + ++ SP F+ +L+ +S L L
Sbjct: 66 GENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTL 125
Query: 62 LGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSV 121
I+L SL + E K W LY D + ++ DG+ D AA+ AAL +P+
Sbjct: 126 -----QQSNLINLQSLCIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPT- 179
Query: 122 HVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGK-----HYIVDATLEEESQMS 176
A DE E I T V + T + + D T EEE +
Sbjct: 180 -----AVWDEDLERVICASTL----TRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLST 230
Query: 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVA 212
++I +N +I +IK GG + P ++ I VA
Sbjct: 231 EFLTIMLNSSKNIVKIIKLGGTHIQPLLLKKCIEVA 266
>sp|Q05636|RRP45_YEAST Exosome complex component RRP45 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP45 PE=1 SV=1
Length = 305
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 24/238 (10%)
Query: 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQH 59
MG+T V + ++ +P +P +G I + SP A FE G E S ++
Sbjct: 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEK 110
Query: 60 CLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIP 119
+ +SGA +D+ L +V G CW + D + DG +DA A+ A L + P
Sbjct: 111 SV--RRSGA---LDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKP 165
Query: 120 SVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKH--------------YIV 165
+ V E P +++ E + +P+ T + I+
Sbjct: 166 DITVHGEQII-VHP---VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISII 221
Query: 166 DATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223
DATL+EE +++++N+ + + K GG+ +D ++ A + ++ D++
Sbjct: 222 DATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQI 279
>sp|Q12277|RRP42_YEAST Exosome complex component RRP42 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP42 PE=1 SV=1
Length = 265
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 61 LLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPS 120
LL +G+G+D S L + + K + +++D LVISS + + + AI +AL++T +P
Sbjct: 98 LLNKVLKSGSGVDSSKLQLTK-KYSFKIFVDVLVISSHSHPVSLISFAIYSALNSTYLPK 156
Query: 121 VHVAA-EAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAV 179
+ A + +E P D + ++ D + P++ L VG + ++D E ++ +
Sbjct: 157 LISAFDDLEVEELPT--FHDYDMVKLDINP-PLVFILAVVGNNMLLDPAANESEVANNGL 213
Query: 180 SISINRQGHICGMIK 194
IS + G I I+
Sbjct: 214 IISWS-NGKITSPIR 227
>sp|B3RID0|RTCB_TRIAD tRNA-splicing ligase RtcB homolog OS=Trichoplax adhaerens
GN=TRIADDRAFT_18395 PE=3 SV=1
Length = 510
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 138 SDEEFLQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG 197
S++ L+ G+P + TL G HY ++E +A S+ INR+G IC M+ G
Sbjct: 209 SNKISLRAKKRGLPQLGTLG-AGNHYAEIQAVDEIYDSFAAKSMGINRRGQICIMVHSGS 267
Query: 198 VGLDPSVILD-MISVANFVSRQLMDKLDSEIAAADADEDE 236
GL V D + ++ + + ++ D ++A A DE
Sbjct: 268 RGLGHQVATDALFNMEKAMIKDGINVNDRQLACARIASDE 307
>sp|A9UXG6|RTCB_MONBE tRNA-splicing ligase RtcB homolog OS=Monosiga brevicollis GN=24995
PE=3 SV=1
Length = 497
Score = 38.1 bits (87), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 148 SGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILD 207
G+P + TL G HY +EE +A + IN++ IC MI G GL V D
Sbjct: 206 RGLPQLGTLG-AGNHYAEIQVVEEIYDKEAAAKMGINKKNQICVMIHSGSRGLGHQVATD 264
Query: 208 -MISVANFVSRQLMDKLDSEIAAADADEDE 236
++++ + R ++ D ++A A +E
Sbjct: 265 ALVAMEKAMKRDGIEVNDRQLACARIHSEE 294
>sp|Q54Y09|RTCB_DICDI tRNA-splicing ligase RtcB homolog OS=Dictyostelium discoideum
GN=DDB_G0278481 PE=3 SV=1
Length = 508
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 149 GVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDM 208
G+P + TL G HY+ ++E ++A + I+RQG IC MI G GL V D
Sbjct: 218 GLPQLGTLG-AGNHYLEVQVVDEIYDKAAANKMGIDRQGQICIMIHSGSRGLGHQVATDS 276
Query: 209 ISVA-NFVSRQLMDKLDSEIAAADADEDE 236
+++ ++R + D ++A + + E
Sbjct: 277 LTLMEKAMARDHIHLNDKQLACSRINSTE 305
>sp|O60124|RRP42_SCHPO Exosome complex component rrp42 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp42 PE=3 SV=1
Length = 299
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 27/201 (13%)
Query: 3 STDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLL 62
S +++ VKAE+G + P+ GK V+ SP+ + + R +E+ + L+SALQ L
Sbjct: 56 SVEIVIGVKAEVGDAT---PEGGKYVASVEISPSV--SIQNRETDEIPSFLTSALQDLL- 109
Query: 63 GGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVISSDG---NLLDALGAAIKAALSNTGIP 119
+ + L K W +++D +VI S N+L AL A AL T +P
Sbjct: 110 -------NALAVDYLKFTPSK-AWIIHVDAVVILSSSPYENILSALSLAAYLALQTTRLP 161
Query: 120 SVHV---------AAEAASDEQPEVDISDEEFLQFD-TSGVPVITTLTKVGKHYIVDATL 169
+ + + E+ +VD E L + VI ++ + + IVD T+
Sbjct: 162 KISTPNVTDITIGSTKYEPSEEYDVDSEWENALPLQGLELMSVIILVSSIDQVIIVDPTI 221
Query: 170 EEESQMSSAVSISINRQGHIC 190
EE S +I + G I
Sbjct: 222 EESSVAQVTYAIGVQASGAIS 242
>sp|Q7Q412|RTCB_ANOGA tRNA-splicing ligase RtcB homolog OS=Anopheles gambiae
GN=AGAP008147 PE=3 SV=2
Length = 506
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 143 LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDP 202
L+ G+P + TL G HY +EE +A + I G IC MI G G
Sbjct: 210 LRAKKRGLPQLGTLG-AGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFGH 268
Query: 203 SVILD-MISVANFVSRQLMDKLDSEIAAADADEDE 236
V D ++ + + R ++ D ++A A + E
Sbjct: 269 QVATDALVEMEKAMKRDKIETNDRQLACARINSPE 303
>sp|A7RKF6|RTCB_NEMVE tRNA-splicing ligase RtcB homolog OS=Nematostella vectensis
GN=v1g198406 PE=3 SV=1
Length = 505
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 149 GVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILD- 207
G+P + TL G HY ++E +A + I+ +G +C MI G GL V D
Sbjct: 215 GLPQLGTLG-AGNHYAEIQVVDEIYNEFAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDA 273
Query: 208 MISVANFVSRQLMDKLDSEIAAADADEDE 236
++++ + R ++ D ++A A E
Sbjct: 274 LVAMEKAMKRDKIEVNDRQLACAHIKSPE 302
>sp|Q6NZS4|RTCB_DANRE tRNA-splicing ligase RtcB homolog OS=Danio rerio GN=zgc:76871 PE=2
SV=1
Length = 505
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 149 GVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILD- 207
G+P + TL G HY ++E +A + I+ +G +C MI G GL V D
Sbjct: 215 GLPQLGTLG-AGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDA 273
Query: 208 MISVANFVSRQLMDKLDSEIAAADADEDE 236
++++ + R + D ++A A +E
Sbjct: 274 LVAMEKAMKRDRITVNDRQLACARITSEE 302
>sp|B0XKF3|RTCB2_CULQU tRNA-splicing ligase RtcB homolog 2 OS=Culex quinquefasciatus
GN=CPIJ019543 PE=3 SV=1
Length = 502
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 143 LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDP 202
++ G+P + TL G HY +EE +A + I G IC MI G G
Sbjct: 210 MRAKKRGLPQLGTLG-AGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFGH 268
Query: 203 SVILD-MISVANFVSRQLMDKLDSEIAAADADEDE 236
V D ++ + + R ++ D ++A A + E
Sbjct: 269 QVATDALVEMEKAMKRDKIETNDRQLACARINSVE 303
>sp|Q4N1R8|RTCB_THEPA tRNA-splicing ligase RtcB homolog OS=Theileria parva GN=TP04_0661
PE=3 SV=1
Length = 507
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 160 GKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILD-MISVANFVSRQ 218
G HY +EE SA + I+R G +C M G GL V D ++ + N +++
Sbjct: 227 GNHYGEVQVVEEIYDEYSAKVMGIDRIGQVCIMTHSGSRGLGHQVASDALVDMENSLNKS 286
Query: 219 LMDKLDSEIAAADADEDE 236
+ D ++A A + DE
Sbjct: 287 KIKVNDKQLACARINSDE 304
>sp|B0WCT9|RTCB1_CULQU tRNA-splicing ligase RtcB homolog 1 OS=Culex quinquefasciatus
GN=CPIJ004874 PE=3 SV=1
Length = 506
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 143 LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDP 202
++ G+P + TL G HY +EE +A + I G IC MI G G
Sbjct: 210 MRAKKRGLPQLGTLG-AGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFGH 268
Query: 203 SVILD-MISVANFVSRQLMDKLDSEIAAADADEDE 236
V D ++ + + R ++ D ++A A + E
Sbjct: 269 QVATDALVEMEKAMKRDKIETNDRQLACARINSVE 303
>sp|Q17FP1|RTCB_AEDAE tRNA-splicing ligase RtcB homolog OS=Aedes aegypti GN=AAEL003336
PE=3 SV=1
Length = 506
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 143 LQFDTSGVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDP 202
++ G+P + TL G HY +EE +A + I G IC MI G G
Sbjct: 210 MRAKKRGLPQLGTLG-AGNHYAEIQVVEEIYDKFAASKMGIEELGQICVMIHSGSRGFGH 268
Query: 203 SVILD-MISVANFVSRQLMDKLDSEIAAADADEDE 236
V D ++ + + R ++ D ++A A + E
Sbjct: 269 QVATDALVEMEKAMKRDKIETNDRQLACARINSVE 303
>sp|A4S3S3|RTCB_OSTLU tRNA-splicing ligase RtcB homolog OS=Ostreococcus lucimarinus
(strain CCE9901) GN=OSTLU_25152 PE=3 SV=1
Length = 514
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 149 GVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILD- 207
G+P + TL G HY ++E +A + I+R G IC MI G GL V D
Sbjct: 224 GLPQMGTLG-AGNHYAEIQVVDEIYDEFAAKKMGIDRVGQICIMIHSGSRGLGHQVATDS 282
Query: 208 MISVANFVSRQLMDKLDSEIAAADADEDE 236
+ ++ + R ++ D ++A A E
Sbjct: 283 LTAMERAMERDGIEVNDRQLACAKISSQE 311
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,226,527
Number of Sequences: 539616
Number of extensions: 3672451
Number of successful extensions: 8932
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 8817
Number of HSP's gapped (non-prelim): 90
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)