Query 026528
Match_columns 237
No_of_seqs 133 out of 1094
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:12:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2123 RNase PH-related exori 100.0 1.9E-52 4.2E-57 350.1 27.4 218 1-228 54-271 (272)
2 KOG1614 Exosomal 3'-5' exoribo 100.0 4.8E-51 1E-55 334.3 22.4 220 1-230 50-272 (291)
3 PRK04282 exosome complex RNA-b 100.0 2.1E-48 4.5E-53 336.1 28.9 216 1-228 55-270 (271)
4 KOG1613 Exosomal 3'-5' exoribo 100.0 8.8E-44 1.9E-48 291.1 18.5 218 1-224 67-297 (298)
5 KOG1612 Exosomal 3'-5' exoribo 100.0 5E-42 1.1E-46 282.7 25.0 230 1-235 52-282 (288)
6 PRK00173 rph ribonuclease PH; 100.0 7.5E-37 1.6E-41 259.3 23.9 200 1-229 32-238 (238)
7 TIGR01966 RNasePH ribonuclease 100.0 1.9E-35 4.1E-40 250.5 24.2 198 1-227 31-235 (236)
8 PRK03983 exosome complex exonu 100.0 2E-33 4.2E-38 239.3 23.1 190 1-232 45-237 (244)
9 TIGR02065 ECX1 archaeal exosom 100.0 1.1E-32 2.5E-37 232.7 23.5 188 1-230 39-229 (230)
10 TIGR03591 polynuc_phos polyrib 99.9 2.2E-25 4.8E-30 213.2 24.3 190 1-233 341-544 (684)
11 PRK11824 polynucleotide phosph 99.9 3.9E-25 8.5E-30 211.9 23.5 188 1-231 345-545 (693)
12 COG0689 Rph RNase PH [Translat 99.9 2.8E-25 6.1E-30 184.6 17.6 185 1-227 39-229 (230)
13 PRK11824 polynucleotide phosph 99.9 7.5E-24 1.6E-28 203.1 22.9 183 1-231 35-227 (693)
14 TIGR03591 polynuc_phos polyrib 99.9 2.9E-23 6.3E-28 198.7 22.3 183 1-231 26-218 (684)
15 KOG1068 Exosomal 3'-5' exoribo 99.9 2.4E-23 5.1E-28 172.6 17.8 188 1-230 44-235 (245)
16 PF01138 RNase_PH: 3' exoribon 99.9 1.3E-21 2.9E-26 151.2 12.4 106 1-119 23-132 (132)
17 KOG1069 Exosomal 3'-5' exoribo 99.8 2.1E-19 4.5E-24 144.4 18.8 180 1-230 26-211 (217)
18 PLN00207 polyribonucleotide nu 99.8 5.4E-18 1.2E-22 163.8 23.8 191 1-232 469-677 (891)
19 TIGR02696 pppGpp_PNP guanosine 99.8 1E-16 2.2E-21 152.2 21.1 188 1-230 366-569 (719)
20 PLN00207 polyribonucleotide nu 99.7 5.4E-15 1.2E-19 143.2 21.0 183 1-231 110-302 (891)
21 PF03725 RNase_PH_C: 3' exorib 99.5 3.7E-14 8E-19 97.2 8.4 67 149-215 1-68 (68)
22 TIGR02696 pppGpp_PNP guanosine 99.2 1.1E-09 2.4E-14 104.6 19.9 182 2-230 40-247 (719)
23 COG1185 Pnp Polyribonucleotide 98.8 4.9E-07 1.1E-11 85.3 16.7 182 1-231 35-226 (692)
24 KOG1067 Predicted RNA-binding 98.4 1.2E-05 2.7E-10 74.3 14.2 179 2-229 390-586 (760)
25 KOG1067 Predicted RNA-binding 98.1 5.4E-05 1.2E-09 70.1 11.8 180 1-230 77-267 (760)
26 COG1185 Pnp Polyribonucleotide 96.3 0.077 1.7E-06 51.0 12.6 190 2-233 344-545 (692)
27 PF02575 YbaB_DNA_bd: YbaB/Ebf 78.6 18 0.00038 25.6 7.6 46 174-219 27-74 (93)
28 PRK00153 hypothetical protein; 54.7 57 0.0012 23.8 6.2 47 173-219 34-82 (104)
29 PF09695 YtfJ_HI0045: Bacteria 42.0 71 0.0015 25.5 5.2 34 177-213 125-158 (160)
30 TIGR00103 DNA_YbaB_EbfC DNA-bi 41.7 69 0.0015 23.3 4.8 44 173-216 36-80 (102)
31 PF02061 Lambda_CIII: Lambda P 41.0 52 0.0011 19.9 3.2 31 195-225 11-41 (45)
32 PF12651 RHH_3: Ribbon-helix-h 33.5 69 0.0015 19.5 3.1 31 199-229 8-38 (44)
33 PHA02762 hypothetical protein; 29.4 1.2E+02 0.0026 19.5 3.7 24 172-195 23-46 (62)
34 PTZ00056 glutathione peroxidas 28.0 2.3E+02 0.0049 23.1 6.3 44 179-225 147-192 (199)
35 PRK14623 hypothetical protein; 27.9 2.5E+02 0.0054 20.7 6.1 45 174-218 33-77 (106)
36 COG3064 TolA Membrane protein 27.4 2.9E+02 0.0064 24.7 7.0 61 46-120 302-368 (387)
37 PRK14628 hypothetical protein; 26.5 2.8E+02 0.0061 20.8 6.2 45 174-219 51-96 (118)
38 PRK14621 hypothetical protein; 25.7 2.8E+02 0.0061 20.6 6.0 44 174-218 36-80 (111)
39 PF13103 TonB_2: TonB C termin 24.0 2E+02 0.0043 19.4 4.6 41 175-217 26-66 (85)
40 PRK14626 hypothetical protein; 24.0 3E+02 0.0066 20.3 6.2 45 173-218 36-83 (110)
41 PRK14629 hypothetical protein; 20.6 2.8E+02 0.0061 20.2 4.9 44 173-217 34-80 (99)
42 COG5428 Uncharacterized conser 20.2 2.9E+02 0.0064 18.7 4.7 30 169-198 22-51 (69)
43 PF01402 RHH_1: Ribbon-helix-h 20.1 1.2E+02 0.0025 17.4 2.3 31 200-230 6-36 (39)
No 1
>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-52 Score=350.08 Aligned_cols=218 Identities=33% Similarity=0.508 Sum_probs=205.0
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~ 80 (237)
+|+|+|+|+||.++++|++++|++|.+.+|+|++|.++|.|+.+++++.+.+++|.++|.++.++. +|+++|||.
T Consensus 54 lG~Tqvv~gvK~eig~Pf~DtP~eG~~~~n~El~Plas~~fE~Gppde~aielsrvvdr~lr~s~a-----iDlekL~I~ 128 (272)
T COG2123 54 LGNTQVVVGVKAEIGEPFPDTPNEGVLVVNVELSPLASPSFEPGPPDELAIELSRVVDRGLRESKA-----IDLEKLCIE 128 (272)
T ss_pred ecCeEEEEEEEcccCCCCCCCCCCceEEeeeeeeccccccccCCCCchhHHHHHHHHHHHHHhccC-----cchhheeEe
Confidence 699999999999999999999999999999999999999999999999999999999999999976 999999999
Q ss_pred cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEeC
Q 026528 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG 160 (237)
Q Consensus 81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~~ 160 (237)
+|+++|.+++|++||++|||++||+++|+++||++|++|++....++ ......+.++.||.+.+.|+++||+++|
T Consensus 129 ~g~kvwvv~vDv~vld~DGnl~Da~~lA~~aAL~~t~vP~~~~~~~~-----~~v~~~~~~~~pl~~~~~pi~vt~a~ig 203 (272)
T COG2123 129 EGKKVWVVFVDVHVLDYDGNLIDAASLAAVAALLNTRVPKAVEVGDG-----EIVIEVEEEPVPLPVSNPPISVTFAKIG 203 (272)
T ss_pred cCCEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCceeecCCc-----ceeecccCCCcccccCCCceEEEEEEEC
Confidence 99999999999999999999999999999999999999987776543 2223333467789999999999999999
Q ss_pred cEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 161 KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228 (237)
Q Consensus 161 ~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~ 228 (237)
+.+++|||.+||..++++++|.++++|+|++++|.|++.++.+.+.+|++.|.+.+.++.+.+.++|+
T Consensus 204 ~~lvvDPsleEe~v~d~~ltit~~~~~~Iv~iqK~g~~~~~~~~~~~~~~~A~~~~~kl~~~~~~~L~ 271 (272)
T COG2123 204 NVLVVDPSLEEELVADGRLTITVNEDGEIVAIQKVGGGSITESDLEKALKTALSKAEKLREALKEALK 271 (272)
T ss_pred CEEEeCCCcchhhhcCceEEEEECCCCcEEEEEEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999885
No 2
>KOG1614 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-51 Score=334.26 Aligned_cols=220 Identities=30% Similarity=0.447 Sum_probs=208.2
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~ 80 (237)
||+|+|+|.|++++.+|+.+||.+|.+.+.++++|+++|+|+.++.++....|+++|++.++.+++ +|+|+|||.
T Consensus 50 ~G~Tkvm~~vt~~ia~Py~dRP~eG~~~I~telsPmA~~sfE~Gr~~~~~v~l~Rliek~~R~S~a-----iD~EsLCI~ 124 (291)
T KOG1614|consen 50 MGNTKVMARVTAQIAQPYIDRPHEGSFSIFTELSPMASPSFEPGRKGESEVELSRLIEKALRRSKA-----IDTESLCIR 124 (291)
T ss_pred ecCeeEEEEeehhhcCcccCCCCCCeeeeeeccccccccccCCCCccchHHHHHHHHHHHHHhccc-----cchHHHHhh
Confidence 799999999999999999999999999999999999999999877778999999999999999987 999999999
Q ss_pred cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEec-CCccccccccCCCceEEEEEEe
Q 026528 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDI-SDEEFLQFDTSGVPVITTLTKV 159 (237)
Q Consensus 81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~Pi~vT~~~~ 159 (237)
.|+++|.+++|+++|+.|||++||+++|+++||+++|.|.+++.+. ++.++. .++++.||.++|+|+|+||++|
T Consensus 125 aG~kvW~IRiDlhiLd~DGnlvDaA~iAviaaL~hFrrPdvTv~g~-----ev~ihp~eEr~PvPL~I~HmPIC~tf~ff 199 (291)
T KOG1614|consen 125 AGEKVWLIRIDLHILDHDGNLVDAACIAVIAALMHFRRPDVTVGGE-----EVIIHPVEEREPVPLSIHHMPICFTFGFF 199 (291)
T ss_pred hCCeEEEEEEEEEEEcCCCCeehhHHHHHHHHHHhcCCCCcccccc-----eeEecChhccCCcceeeeeccceEEEEEe
Confidence 9999999999999999999999999999999999999999998864 344443 5688899999999999999999
Q ss_pred C--cEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 160 G--KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 160 ~--~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
+ +..++|||..||.+.++.++|++|+++++|.++|+|+..++..++..|.++|..++-++-+.+.++|++.
T Consensus 200 nkG~ivviDpt~~Ee~~~dGs~vVt~Nk~rEVc~i~k~G~~~~~~~~i~~C~k~A~~~a~~vt~ii~e~l~~d 272 (291)
T KOG1614|consen 200 NKGEIVVIDPTEKEEAVMDGSMVVTMNKNREVCAIQKSGGEILDESVIERCYKLAKDRAVEVTGIILEALEED 272 (291)
T ss_pred cCceEEEeCCcHHHHhccCceEEEEEcCCccEEEEecCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 7899999999999999999999999999999999999999999999999999999999999999998875
No 3
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional
Probab=100.00 E-value=2.1e-48 Score=336.14 Aligned_cols=216 Identities=34% Similarity=0.494 Sum_probs=203.2
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~ 80 (237)
+|+|+|+|+|++++..|..++|++|++.++|+++|++++.|+.+++++.+++++++|+++|++++. +|+++|||.
T Consensus 55 ~G~T~vl~~V~~~~~~p~~~~~~~g~i~~~v~~~~~a~~~~~~~~~~~~~~~l~~~l~r~l~~~~~-----~dl~~L~I~ 129 (271)
T PRK04282 55 LGNTQVLAGVKLEIGEPFPDTPNEGVLIVNAELLPLASPTFEPGPPDENAIELARVVDRGIRESKA-----IDLEKLVIE 129 (271)
T ss_pred ECCCEEEEEEEEEEecCCCCCCCCCEEEEEEEECCCcCccccCCCCCHHHHHHHHHHHHHHhccCC-----ccHHHcEEe
Confidence 599999999999999998899999999999999999999888777788999999999999999876 999999999
Q ss_pred cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEeC
Q 026528 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG 160 (237)
Q Consensus 81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~~ 160 (237)
||+++|.|+|||+||++|||++||+++|+.+||+|+++|++.+.+++ ...++.+..+|.++++|+++||++++
T Consensus 130 ~g~~~w~i~Vdv~VL~~dG~~~daa~~Aa~aAL~~~~iP~~~~~~~~-------~~~~~~~~~~l~~~~~p~~vt~~~~~ 202 (271)
T PRK04282 130 PGKKVWVVFIDVYVLDHDGNLLDASMLAAVAALLNTKVPAVEEGEDG-------VVDKLGEDFPLPVNDKPVTVTFAKIG 202 (271)
T ss_pred cCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCcEEEcCCc-------eeccCCCcccCCCCCeeEEEEEEEEC
Confidence 99999999999999999999999999999999999999999997643 22346677889999999999999999
Q ss_pred cEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 161 KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228 (237)
Q Consensus 161 ~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~ 228 (237)
+.+|+|||.+||+++++.++|+++++|+|+++++.|+++++++.|.+|+++|.+++++++++++++|+
T Consensus 203 ~~~v~Dpt~~Ee~~~~~~l~va~~~~g~i~~l~~~g~~~~~~~~l~~~i~~A~~~~~~l~~~~~~~l~ 270 (271)
T PRK04282 203 NYLIVDPTLEEESVMDARITITTDEDGNIVAIQKSGIGSFTEEEVDKAIDIALEKAKELREKLKEALG 270 (271)
T ss_pred CEEEECCCHHHHhhcCceEEEEECCCCcEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988999999999999999999999999999874
No 4
>KOG1613 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp43 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-44 Score=291.07 Aligned_cols=218 Identities=26% Similarity=0.400 Sum_probs=188.8
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~ 80 (237)
+|+|.|+|+||+|+.+|..+.|++|.|..|++++|.+++.|+.++|.+.++.+|+.|.+.+.+|++ |+++.|||.
T Consensus 67 ~G~ttvi~~Ik~ei~epstdapdeg~Iv~n~~lpplcs~r~RpG~p~dea~viSq~LhdtIl~S~i-----i~~k~Lci~ 141 (298)
T KOG1613|consen 67 SGKTTVICGIKAEIAEPSTDAPDEGDIVPNYALPPLCSSRFRPGPPTDEAQVISQKLHDTILHSRI-----IPKKALCIK 141 (298)
T ss_pred cCCcEEEEEeeeeecccccCCCCCcceeecccCCcccccCCCCCCCchHHHHHHHHHHHHHHhcCC-----cchhhheee
Confidence 599999999999999999999999999999999999999999999999999999999999999988 999999999
Q ss_pred cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCC----CCce----Eec---CCccccccccCC
Q 026528 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASD----EQPE----VDI---SDEEFLQFDTSG 149 (237)
Q Consensus 81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~----~~~~----~~~---~~~~~~~l~~~~ 149 (237)
+||++|.+|.|++||++||++||+||+|.++||++.+||.+.++++..+- +++. ++. -..+.++|..++
T Consensus 142 ~gKaawvlYadIicLd~dG~~fDa~w~al~aAlknvklP~a~ide~~~~~~~t~e~~ic~~tlt~p~~ln~e~r~~~~~n 221 (298)
T KOG1613|consen 142 AGKAAWVLYADIICLDYDGPVFDACWNALMAALKNVKLPRAFIDERASDLRMTIEEIICDQTLTVPLMLNAENRAFASQN 221 (298)
T ss_pred ccceeeEEEEEEEEEcCCCcHHHHHHHHHHHHHhcCCCceeeecccchhhhhhHHHHHHhhhhcchhhhccccccccccC
Confidence 99999999999999999999999999999999999999999998765321 1110 110 112334555555
Q ss_pred CceEEEEEEeCcEEE-EcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccC-HHHHHHHHHHHHHHHHHHHHHHH
Q 026528 150 VPVITTLTKVGKHYI-VDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLD-PSVILDMISVANFVSRQLMDKLD 224 (237)
Q Consensus 150 ~Pi~vT~~~~~~~~l-~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~-~~~l~~~i~~a~~~~~~l~~~l~ 224 (237)
.|.+.+. ++++.++ .|||.+||..+.+.++|++++.|+++.++|.||+.+. ++.|++|+.+|..+++++.+.++
T Consensus 222 ~~fS~~~-vl~~~li~adpT~eEE~l~~~~lTIvldss~n~v~l~k~GG~al~~~~~iK~c~elar~Rakelk~~~~ 297 (298)
T KOG1613|consen 222 SDFSEEE-VLDDVLIAADPTEEEETLITSTLTIVLDSSGNYVQLTKVGGGALITPEMIKRCLELARVRAKELKTRFN 297 (298)
T ss_pred CCccHHH-hhcceeEecCCCchhhhhhhceEEEEEcCCCCEEEEEecCcccccCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5655444 5666655 8999999999999999999999999999999987554 69999999999999999987764
No 5
>KOG1612 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-42 Score=282.74 Aligned_cols=230 Identities=42% Similarity=0.627 Sum_probs=207.5
Q ss_pred CCC-cEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeE
Q 026528 1 MGS-TDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVV 79 (237)
Q Consensus 1 lG~-T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I 79 (237)
+|+ |.|+++||+|++.|...+|++|.+.++|+++|.++|+|.+|+.++...+|++.|+++|+..+ ..+|+++|++
T Consensus 52 ~g~~tdiivgVKaEvg~~~~~~p~egk~~~~VD~S~sasp~f~gRggde~~~eltsaLq~~l~~~~----sgv~ls~L~l 127 (288)
T KOG1612|consen 52 LGDGTDIIVGVKAEVGSPDDETPVEGKYLFFVDCSPSASPQFQGRGGDELVEELTSALQRVLNSLG----SGVDLSKLQL 127 (288)
T ss_pred ecCCceEEEEEeeeccCccccCCCCCeEEEEEEecCCcCccccCCChhhHHHHHHHHHHHHHhCcC----cccchhheec
Confidence 355 99999999999999999999999999999999999999999999999999999999998743 3499999999
Q ss_pred EcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEe
Q 026528 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159 (237)
Q Consensus 80 ~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~ 159 (237)
.|+ ++|.||||+.|++.|||++||.++|+++||.+|+||++.+..++.+..++.+.+++++...+.+..+|+.+|++.+
T Consensus 128 t~~-~~W~i~VDvlVi~s~gn~~dAiS~Ai~~AL~~T~lPkv~v~~dd~~~~~i~~s~~~Yd~~~~~~~~~P~ivtlskI 206 (288)
T KOG1612|consen 128 TPG-YCWKIYVDVLVISSDGNLLDAISIAIYAALNNTRLPKVIVAFDDDGEVEILLSDEEYDLMVKLVENVPLIVTLSKI 206 (288)
T ss_pred cCC-eeEEEEEeEEEEecCCCHHHHHHHHHHHHHhcccCCccccccccCCceeeccCcccchhhhhhcccCCEEEEEEee
Confidence 998 8999999999999999999999999999999999999999877433333334445555455667889999999999
Q ss_pred CcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 026528 160 GKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADADED 235 (237)
Q Consensus 160 ~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~~~~~ 235 (237)
+..+++|||.+||+++.+.+.|.+++.|-+.++.+.|.+.+.++.+..|++.+.+....++..+.+.|+++++-++
T Consensus 207 G~~~lVD~T~eEe~~a~s~l~Isv~a~givs~~r~VG~G~l~~s~i~~mle~~~~~~e~l~~~l~k~L~~~e~~~~ 282 (288)
T KOG1612|consen 207 GTNMLVDPTAEEESVANSGLLISVSAGGIVSCTRSVGLGDLDPSSIPEMLEQGKAVVETLAPDLVKSLENEEDILS 282 (288)
T ss_pred cceEEccCCccHHHhhhcceEEEEecCcceEEEEEecCCCCChhhHHHHHHHHHHHHHhhhHHHHHHhhhhhhccC
Confidence 9999999999999999999999999999888899999888999999999999999999999999999999887443
No 6
>PRK00173 rph ribonuclease PH; Reviewed
Probab=100.00 E-value=7.5e-37 Score=259.32 Aligned_cols=200 Identities=19% Similarity=0.202 Sum_probs=173.2
Q ss_pred CCCcEEEEEEEEEeeCCCC-CCCCCceEEEEEeeCCCCCCCcC-----CCCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSA-MQPDKGKVAIFVDCSPTAEPTFE-----GRGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~-~~p~~G~i~~~v~~~~~~~~~~~-----~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|++++..|.. ..|++|.+.|+++++|++++.|+ .+++++.+.+++++|++.|+.. ||+
T Consensus 32 ~G~T~Vla~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~~g~~~~~~~~~sr~i~r~lr~~-------i~l 104 (238)
T PRK00173 32 FGDTKVLCTASVEEGVPRFLKGQGQGWVTAEYGMLPRATHTRNDREAAKGKQGGRTQEIQRLIGRSLRAV-------VDL 104 (238)
T ss_pred ecCcEEEEEEEcCCCCCCccCCCCcEEEEEEEecCCCCCcccccccccCCCCCccHHHHHHHHHHHHHHh-------cCH
Confidence 6999999999999998854 46789999999999999999874 2346778999999999999975 999
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
+.| ++.. ++|+++||++|||++||+++|+.+||+|++++.. . +....++.++++|+++
T Consensus 105 ~~l----~~~~--i~v~v~VL~~DG~~~~aai~Aa~~AL~da~~~~~---~-------------~~~~~~ip~~~~~~~v 162 (238)
T PRK00173 105 KAL----GERT--ITIDCDVIQADGGTRTASITGAYVALADALNKLV---A-------------RGKLKKNPLKDQVAAV 162 (238)
T ss_pred HHc----CCeE--EEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhh---c-------------cCcccCCcccCceeEE
Confidence 999 4555 5556677999999999999999999999985411 1 1112345678999999
Q ss_pred EEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026528 155 TLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRG-GVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229 (237)
Q Consensus 155 T~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G-~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~ 229 (237)
|++++++.+|+|||.+||+++++.++|+++++|+||.+++.| +.+++.++|.+|+++|.+++++++++++++|++
T Consensus 163 t~~~~~~~~lvDpt~~Ee~~~~~~l~v~~~~~~~i~~v~~~g~g~~~~~e~l~~~i~~A~~~~~~l~~~~~~~l~~ 238 (238)
T PRK00173 163 SVGIVDGEPVLDLDYEEDSAAETDMNVVMTGSGGFVEVQGTAEGAPFSREELDALLDLAEKGIAELVALQKAALAD 238 (238)
T ss_pred EEEEECCEEEECCCHHHHhcCCceEEEEECCCCCEEEEEccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999965 568999999999999999999999999999863
No 7
>TIGR01966 RNasePH ribonuclease PH. This bacterial enzyme, ribonuclease PH, performs the final 3'-trimming and modification of tRNA precursors. This model is restricted absolutely to bacteria. Related families outside the model include proteins described as probable exosome complex exonucleases (rRNA processing) and polyribonucleotide nucleotidyltransferases (mRNA degradation). The most divergent member within the family is RNase PH from Deinococcus radiodurans.
Probab=100.00 E-value=1.9e-35 Score=250.47 Aligned_cols=198 Identities=17% Similarity=0.195 Sum_probs=171.0
Q ss_pred CCCcEEEEEEEEEeeCCCCCC-CCCceEEEEEeeCCCCCCCcC-----CCCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQ-PDKGKVAIFVDCSPTAEPTFE-----GRGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~-p~~G~i~~~v~~~~~~~~~~~-----~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|+++...|...+ |++|.+.|+++++|++++.++ .+++++.+.+++++|++.|++. ||+
T Consensus 31 ~G~T~Vla~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~r~~~~g~~~~~~~e~~~~i~r~lr~~-------i~l 103 (236)
T TIGR01966 31 FGNTKVLCTASVEEKVPPFLRGSGEGWITAEYGMLPRATQTRNRRESAKGKQSGRTQEIQRLIGRALRAV-------VDL 103 (236)
T ss_pred ecCCEEEEEEEccCccCCcccCCCcEEEEEEEecCCCCCCCCccccccCCCCCccHHHHHHHHHHHHHHh-------cCH
Confidence 699999999999998887655 689999999999999998662 1334456889999999999975 999
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
+.| ++. .++|+++||++|||++|||++|+.+||.|++++.... . ....+.++++|+++
T Consensus 104 ~~l----~~~--~i~I~v~VL~~DG~~~~aai~Aa~aAL~da~~~~~~~--------------~--~~~~ip~~~~~~~v 161 (236)
T TIGR01966 104 EAL----GER--TIWIDCDVIQADGGTRTASITGAFVALADAISKLHKR--------------G--ILKESPIRDFVAAV 161 (236)
T ss_pred hhc----CCe--EEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhhhhc--------------C--cccCCCccCceeEE
Confidence 998 344 5778888999999999999999999999997653110 0 11245678999999
Q ss_pred EEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 155 TLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRG-GVGLDPSVILDMISVANFVSRQLMDKLDSEI 227 (237)
Q Consensus 155 T~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G-~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l 227 (237)
|++++++.+|+|||.+||+++++.++++++++++||.+++.| ++.++++++.+|+++|.+++++++++++++|
T Consensus 162 t~~~~~~~~v~Dpt~~Ee~~~~~~l~l~~~~~~~i~~i~~~g~~~~~~~~~l~~~i~~a~~~~~~l~~~~~~~l 235 (236)
T TIGR01966 162 SVGIVDGEPVLDLDYEEDSAADVDMNVVMTGSGGFVEVQGTAEEGPFSRDELNKLLDLAKKGIRELIELQKQAL 235 (236)
T ss_pred EEEEECCEEEECCChhHHhccCceEEEEEcCCCCEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999965 5789999999999999999999999999886
No 8
>PRK03983 exosome complex exonuclease Rrp41; Provisional
Probab=100.00 E-value=2e-33 Score=239.30 Aligned_cols=190 Identities=19% Similarity=0.206 Sum_probs=168.1
Q ss_pred CCCcEEEEEEEEE--eeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCcee
Q 026528 1 MGSTDVIASVKAE--LGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLV 78 (237)
Q Consensus 1 lG~T~Vi~~V~~e--i~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~ 78 (237)
+|+|+|+|+|+++ +..|...+|++|.+.++++++|++++.+..+++++.+.+++++|+++|+++ +.++.+
T Consensus 45 ~G~T~Vl~~V~gp~e~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~~~~~~~~~s~~l~~~l~~~-------i~~~~~- 116 (244)
T PRK03983 45 WGNNKIIAAVYGPREMHPRHLQLPDRAVLRVRYNMAPFSVDERKRPGPDRRSIEISKVIREALEPA-------IMLELF- 116 (244)
T ss_pred ECCeEEEEEEecCCccccccccCCCcEEEEEEEEcCCCccccccCCCCChhHHHHHHHHHHHHHHh-------ccHHhC-
Confidence 5999999999984 445666789999999999999999876554456788999999999999987 555554
Q ss_pred EEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEE
Q 026528 79 VVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK 158 (237)
Q Consensus 79 I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~ 158 (237)
| .|.++|.++||++|||+++|+++|+.+||.|++||+ +++|.++|+++
T Consensus 117 --p---~~~I~I~i~VL~~DG~~~~aai~Aa~lAL~dagIp~---------------------------~~~v~avtv~~ 164 (244)
T PRK03983 117 --P---RTVIDVFIEVLQADAGTRVAGITAASLALADAGIPM---------------------------RDLVAGCAVGK 164 (244)
T ss_pred --C---CeEEEEEEEEEECCCCHHHHHHHHHHHHHHhcCCcc---------------------------ccceeEEEEEE
Confidence 2 367888888999999999999999999999999996 37899999999
Q ss_pred eCcEEEEcCChHHHhcCCCeEEEEEc-CCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 026528 159 VGKHYIVDATLEEESQMSSAVSISIN-RQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA 232 (237)
Q Consensus 159 ~~~~~l~Dpt~~EE~~~~~~l~i~~~-~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~~ 232 (237)
+++.+++|||.+||+++++.++|+++ +.|+|+.+++.| .++++++.+|+++|.+.+++++++++++|++...
T Consensus 165 ~~~~~i~DPt~~Ee~~~~~~l~va~~~~~~~I~~l~~~G--~~~~~~~~~~i~~A~~~~~~i~~~i~~~l~~~~~ 237 (244)
T PRK03983 165 VDGVIVLDLNKEEDNYGEADMPVAIMPRLGEITLLQLDG--NLTREEFLEALELAKKGIKRIYQLQREALKSKYG 237 (244)
T ss_pred ECCEEEECCCHHHhccCCceEEEEEECCCCCEEEEEEec--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 578999999997 5999999999999999999999999999986543
No 9
>TIGR02065 ECX1 archaeal exosome-like complex exonuclease 1. This family contains the archaeal protein orthologous to the eukaryotic exosome protein Rrp41. It is somewhat more distantly related to the bacterial protein ribonuclease PH. An exosome-like complex has been demonstrated experimentally for the Archaea in Sulfolobus solfataricus, so members of this family are designated exosome complex exonuclease 1, after usage in SwissProt.
Probab=100.00 E-value=1.1e-32 Score=232.67 Aligned_cols=188 Identities=18% Similarity=0.198 Sum_probs=165.2
Q ss_pred CCCcEEEEEEEEEe--eCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCcee
Q 026528 1 MGSTDVIASVKAEL--GRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLV 78 (237)
Q Consensus 1 lG~T~Vi~~V~~ei--~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~ 78 (237)
+|+|+|+|+|+++. ..|....|++|.+.++++++|++++.++.+.+++.+.+++++|+++|++. +.++.+
T Consensus 39 ~G~T~Vl~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~a~~~~~~~~~~~~~~~~s~~l~~~l~~~-------i~~~~~- 110 (230)
T TIGR02065 39 FGGTKIIAAVYGPREMHPRHLQLPDRAVLRVRYHMAPFSTDERKRPGPSRREIEISKVIREALEPA-------ILLEQF- 110 (230)
T ss_pred ECCcEEEEEEeCCCccccccccCCCceEEEEEEEeCCcccCCccCCCCCccHHHHHHHHHHHHHHH-------hChhhc-
Confidence 59999999999954 44555679999999999999999866554456788999999999999987 666655
Q ss_pred EEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEE
Q 026528 79 VVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK 158 (237)
Q Consensus 79 I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~ 158 (237)
| + +.++|.++||++|||++||+++|+.+||.|++||+ +++|.++|+++
T Consensus 111 --p-~--~~i~i~v~vl~~DG~~~~aai~aa~lAL~dagIp~---------------------------~~~v~avtv~~ 158 (230)
T TIGR02065 111 --P-R--TAIDVFIEVLQADAGTRCAGLTAASLALADAGIPM---------------------------RDLVVGVAVGK 158 (230)
T ss_pred --C-C--eEEEEEEEEEEcCCCHHHHHHHHHHHHHHHcCCcc---------------------------ccceeeEEEEE
Confidence 3 3 35666668999999999999999999999999996 37899999999
Q ss_pred eCcEEEEcCChHHHhcCCCeEEEEEc-CCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 159 VGKHYIVDATLEEESQMSSAVSISIN-RQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 159 ~~~~~l~Dpt~~EE~~~~~~l~i~~~-~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
+++.+++|||.+||+++++.++|++. ..++|+.+++.| .++++.+.+|+++|.+.+++++++++++|++.
T Consensus 159 ~~~~~v~Dpt~~Ee~~~~~~l~va~~~~~~~i~~i~~~g--~~~~e~~~~~l~~a~~~~~~l~~~~~~~l~~~ 229 (230)
T TIGR02065 159 VDGVVVLDLNEEEDMYGEADMPVAMMPKLGEITLLQLDG--DMTPDEFRQALDLAVKGIKIIYQIQREALKNK 229 (230)
T ss_pred ECCeEEECCCHHHhhcCCCceEEEEeCCCCCEEEEEEec--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999985 478999999987 49999999999999999999999999999764
No 10
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=99.94 E-value=2.2e-25 Score=213.21 Aligned_cols=190 Identities=13% Similarity=0.142 Sum_probs=162.9
Q ss_pred CCCcEEEEEEEEEeeCCCCCC-------CCCceEEEEEeeCCCCCCCcC-CCCCchhHHHHHHHHHHHHhcCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQ-------PDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGI 72 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~-------p~~G~i~~~v~~~~~~~~~~~-~~~~~~~~~~ls~~L~~~l~~~~~~~~~~i 72 (237)
+|+|+|+|+|+ +++|...+ ..+|++.++++++||+++.++ .+++++++..++++++++|++. +
T Consensus 341 ~G~Tqvl~~vt--~g~~~~~~~~~~~~~~~~~~~~~~y~~~pfs~~e~~~~g~~~rrei~~~~l~~ral~~~-------i 411 (684)
T TIGR03591 341 RGETQALVVTT--LGTERDEQIIDDLEGEYRKRFMLHYNFPPYSVGEVGRVGGPGRREIGHGALAERALKAV-------L 411 (684)
T ss_pred eCCeEEEEEEe--cCCcccccCCcccCCCccEEEEEEEEcCCCCCCCcCCCCCCChHHHHHHHHHHHHHHHh-------c
Confidence 59999999997 33332222 347899999999999998776 3557789999999999999875 6
Q ss_pred CCCceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCce
Q 026528 73 DLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPV 152 (237)
Q Consensus 73 d~e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi 152 (237)
++ .+++.|.|+|++.||++|||..+|+++|+++||+|+++|+. +.|.
T Consensus 412 ~~------~~~~p~tI~v~~~VLesdGs~~~Aai~aaslAL~dAgvP~~---------------------------~~Va 458 (684)
T TIGR03591 412 PS------EEEFPYTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIK---------------------------APVA 458 (684)
T ss_pred Cc------cccCCeEEEEEEEEEeCCCChHHHHHHHHHHHHHhcCCCCc---------------------------CCEE
Confidence 63 24556999999999999999999999999999999999973 5689
Q ss_pred EEEEEEeC---c--EEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 153 ITTLTKVG---K--HYIVDATLEEESQMSSAVSISINRQGHICGMIKRG-GVGLDPSVILDMISVANFVSRQLMDKLDSE 226 (237)
Q Consensus 153 ~vT~~~~~---~--~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G-~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~ 226 (237)
++|+|+++ + .+++||+.+||..++..++|+.+.+| |+.+++.+ ..+++.+.|.++++.|.++++++.+.++++
T Consensus 459 gvs~gli~~~~~~~~il~D~~~~Ed~~~d~d~~va~t~~g-I~~lq~d~k~~~i~~~~l~~al~~a~~~~~~I~~~m~~~ 537 (684)
T TIGR03591 459 GIAMGLIKEGDERFAVLSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIDGITREIMEQALEQAKEGRLHILGEMNKV 537 (684)
T ss_pred EEEEEEEcCCCcceEEEeCCChHHHhcCCceEEEEEcCCc-eEEEEEEcCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999995 1 59999999999999999999998877 99999954 457999999999999999999999999999
Q ss_pred HHhcccc
Q 026528 227 IAAADAD 233 (237)
Q Consensus 227 l~~~~~~ 233 (237)
+.+...+
T Consensus 538 l~~~~~~ 544 (684)
T TIGR03591 538 ISEPRAE 544 (684)
T ss_pred Hhhhhcc
Confidence 9987553
No 11
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=99.94 E-value=3.9e-25 Score=211.94 Aligned_cols=188 Identities=13% Similarity=0.129 Sum_probs=159.7
Q ss_pred CCCcEEEEEEEEEeeCCCCCC-------CCCceEEEEEeeCCCCCCCcC-CCCCchhHHHHHHHHHHHHhcCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQ-------PDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGI 72 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~-------p~~G~i~~~v~~~~~~~~~~~-~~~~~~~~~~ls~~L~~~l~~~~~~~~~~i 72 (237)
+|+|+|+|+|+. ++|...+ .++|++.++++++||+++.+. .+++++++..++++++++|+.. +
T Consensus 345 ~G~T~Vl~~vt~--g~~~~~~~~~~~~~~~~~~~~~~y~~~pfs~~e~~~~~~~~rre~~~~~li~ral~~v-------i 415 (693)
T PRK11824 345 RGETQALVVATL--GTLRDEQIIDGLEGEYKKRFMLHYNFPPYSVGETGRVGSPGRREIGHGALAERALEPV-------L 415 (693)
T ss_pred ECCeEEEEEEec--CCCcccccccccCCCCcEEEEEEEEcCCCCCCCcCCCCCCChhHHHHHHHHHHHHHHh-------c
Confidence 599999999972 3322211 268999999999999988763 3457789999999999999875 6
Q ss_pred CCCceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCce
Q 026528 73 DLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPV 152 (237)
Q Consensus 73 d~e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi 152 (237)
++ ++++.|.|+|++.||++|||..+|+++|+++||+|+++|+ .+++.
T Consensus 416 ~~------~~~~p~~I~v~~~VLe~dGs~~~Aai~aaslAL~dAgvP~---------------------------~~~Va 462 (693)
T PRK11824 416 PS------EEEFPYTIRVVSEILESNGSSSMASVCGSSLALMDAGVPI---------------------------KAPVA 462 (693)
T ss_pred Cc------ccCCCEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCc---------------------------cCcee
Confidence 63 2345699999999999999999999999999999999996 35788
Q ss_pred EEEEEEeCc----EEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 153 ITTLTKVGK----HYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDKLDSEI 227 (237)
Q Consensus 153 ~vT~~~~~~----~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~-~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l 227 (237)
++|+|++++ .+++||+.+||..++..++|+.+.+| |+.++..|. ++++.+.|.++++.|.+.++++++.+.+++
T Consensus 463 ~vs~gli~~~~~~~il~D~~~~Ed~~~d~d~~va~t~~g-i~~lq~d~k~~~i~~~~l~~al~~a~~g~~~I~~~M~~aI 541 (693)
T PRK11824 463 GIAMGLIKEGDKYAVLTDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIDGITREILEEALEQAKEGRLHILGKMNEAI 541 (693)
T ss_pred EEEEEEEcCCCceEEEcCCChhhHhhCCceEEEEecCCc-eEEEEEecccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999853 48899999999999999999998877 999995542 359999999999999999999999999998
Q ss_pred Hhcc
Q 026528 228 AAAD 231 (237)
Q Consensus 228 ~~~~ 231 (237)
..-.
T Consensus 542 ~~~r 545 (693)
T PRK11824 542 SEPR 545 (693)
T ss_pred cCCh
Confidence 7654
No 12
>COG0689 Rph RNase PH [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.8e-25 Score=184.59 Aligned_cols=185 Identities=21% Similarity=0.273 Sum_probs=159.0
Q ss_pred CCCcEEEEEEEEEeeC--CCCCCCCCceEEEEEeeCCCCCCCcCCCCCch-hHHHHHHHHHHHHhcCCCCCCCCCCCCce
Q 026528 1 MGSTDVIASVKAELGR--PSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEE-LSAELSSALQHCLLGGKSGAGAGIDLSSL 77 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~--p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~-~~~~ls~~L~~~l~~~~~~~~~~id~e~L 77 (237)
+|||+|+|+|+++.+. +....+.+|++.+.+.+.|+++.....+.+++ +.+++++++.++|++. ++++.|
T Consensus 39 ~G~tkVic~vsGp~e~~p~~l~~~~~g~~t~ey~m~p~sT~~R~~~~~~~gR~~eisrli~~al~~~-------i~L~~~ 111 (230)
T COG0689 39 FGNTKVICTVSGPREPVPRFLRGTGKGWLTAEYGMLPRSTDERKKREADRGRTKEISRLIGRALRAV-------IDLELL 111 (230)
T ss_pred eCCeEEEEEEecCCCCCChhhcCCCceEEEEEEecccccccccccccccccchhHHHHHHHHHHHHH-------hhhhhc
Confidence 5999999999976643 22345788999999999999985443344444 7899999999999987 998888
Q ss_pred eEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEE
Q 026528 78 VVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT 157 (237)
Q Consensus 78 ~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~ 157 (237)
| +. .|+|++.|+++||+.+-|+++|+..||.|+++|+. ++..++|+|
T Consensus 112 ---p-~~--~I~i~~dVlqaDggTrta~It~A~lAL~DAgipl~---------------------------~~vaaiSvg 158 (230)
T COG0689 112 ---P-ES--TIDIDCDVLQADGGTRTASITGASLALADAGIPLR---------------------------DLVAAISVG 158 (230)
T ss_pred ---C-cc--EEEEEEEEEECCCCeeeehhhHHHHHHHHcCCchh---------------------------hheeEeEEE
Confidence 3 33 69999999999999999999999999999999963 567899999
Q ss_pred EeCcEEEEcCChHHHhcCCCeEEEEEcCCCc---EEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 158 KVGKHYIVDATLEEESQMSSAVSISINRQGH---ICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEI 227 (237)
Q Consensus 158 ~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~---i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l 227 (237)
++++.+++|++.+|++.+.+.++|++..+|+ |.++...| +++.+.|.+++++|.+.++++++.++++|
T Consensus 159 i~~~~~~lDl~~~Eds~~~~d~~v~~~~~~~~~ei~~~~~~~--~~~~del~~lL~la~~g~~~~~~~~~~al 229 (230)
T COG0689 159 IVDGVIVLDLDYEEDSAAEADMNVVMTGNGGLVEIQGLAEDG--PFTEDELLELLDLAIKGCNELRELQREAL 229 (230)
T ss_pred EECCceEecCcchhhcccccCceEEEEecCCeEEEEEEeccC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988777 55555554 69999999999999999999999999987
No 13
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=99.92 E-value=7.5e-24 Score=203.12 Aligned_cols=183 Identities=19% Similarity=0.199 Sum_probs=156.3
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCC--CC----Cc--CCCCCchhHHHHHHHHHHHHhcCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTA--EP----TF--EGRGGEELSAELSSALQHCLLGGKSGAGAGI 72 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~--~~----~~--~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~i 72 (237)
+|+|+|+|+|+++.. | +++.+++.++|++.+.+ ++ .| +.++|++.+..++++++|.|++.
T Consensus 35 ~G~T~VlatV~~~~~-~---~~~~df~pL~v~y~e~~~A~gkiP~~f~kreg~pse~eil~srlIdR~lrpl-------- 102 (693)
T PRK11824 35 YGDTVVLVTVVASKE-P---KEGQDFFPLTVDYEEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPL-------- 102 (693)
T ss_pred ECCeEEEEEEEcCCC-C---CCCCCeeeeEEEEEehhhhccCCCcccccCCCCCChHHHHHHHHHhhhHHHh--------
Confidence 599999999999877 3 46678888888887544 22 34 33467899999999999999853
Q ss_pred CCCceeEEcCeEEEEEEEEEEEEcCCCCH-HH-HHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCC
Q 026528 73 DLSSLVVVEGKVCWDLYIDGLVISSDGNL-LD-ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150 (237)
Q Consensus 73 d~e~L~I~~g~~~w~l~idv~VL~~dGnl-~d-a~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (237)
+|+.++|.++|+++||++||+. .| ||++|+.+||.+++||+. +.
T Consensus 103 -------fp~~~~~~i~I~~~VL~~Dg~~~~d~aai~aAsaAL~~s~IP~~---------------------------~~ 148 (693)
T PRK11824 103 -------FPKGFRNEVQVVATVLSVDPENDPDILAMIGASAALSISGIPFN---------------------------GP 148 (693)
T ss_pred -------CCCCCCeEEEEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCcC---------------------------CC
Confidence 3677899999999999999955 78 899999999999999962 46
Q ss_pred ceEEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 151 PVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 151 Pi~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
+.++++|++++.+++|||.+|++.++..++|+.+.+ .+.+.+.|+..++.+.|.++++.|.+.++++.+++++.+++.
T Consensus 149 v~av~vg~i~g~~ivdPt~~E~~~s~~~l~va~t~~--~i~mie~~~~~l~e~~l~~al~~a~~~~~~i~~~~~~~~~~~ 226 (693)
T PRK11824 149 IAAVRVGYIDGEFVLNPTVEELEESDLDLVVAGTKD--AVLMVESEAKELSEEVMLEAIEFGHEAIQELIDAQEELAAEA 226 (693)
T ss_pred eEEEEEEEECCEEEEcCCHHHHhhCcceEEEEEccC--ceEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999998764 466667777789999999999999999999999999998866
Q ss_pred c
Q 026528 231 D 231 (237)
Q Consensus 231 ~ 231 (237)
-
T Consensus 227 ~ 227 (693)
T PRK11824 227 G 227 (693)
T ss_pred C
Confidence 5
No 14
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=99.92 E-value=2.9e-23 Score=198.71 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=153.9
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCC--C----Cc--CCCCCchhHHHHHHHHHHHHhcCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAE--P----TF--EGRGGEELSAELSSALQHCLLGGKSGAGAGI 72 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~--~----~~--~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~i 72 (237)
+|+|+|+|+|+++... +++.+++.++|++.+.++ + .| +.++|++.+..++++++|.|++.
T Consensus 26 ~G~T~VlatV~~~~~~----~~~~df~pL~vey~e~~~A~gkipg~f~kReg~p~~~eil~srlIdR~lrpl-------- 93 (684)
T TIGR03591 26 YGDTVVLVTVVAAKEA----KEGQDFFPLTVNYQEKFYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPL-------- 93 (684)
T ss_pred ECCeEEEEEEEcCCCC----CCCCceEeEEEEEEehhhhccCCCCCcccCCCCCCHHHHHHHHHHhhHHHHh--------
Confidence 5999999999998652 345678888888865432 2 33 23457899999999999999753
Q ss_pred CCCceeEEcCeEEEEEEEEEEEEcCCCCHH-H-HHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCC
Q 026528 73 DLSSLVVVEGKVCWDLYIDGLVISSDGNLL-D-ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150 (237)
Q Consensus 73 d~e~L~I~~g~~~w~l~idv~VL~~dGnl~-d-a~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (237)
+|++++|.++|+++||++||+.. | ||++|+.+||.+++||+ +++
T Consensus 94 -------fp~~~~~~i~V~~~VLs~Dg~~~~d~aai~aAsaAL~~s~IP~---------------------------~~~ 139 (684)
T TIGR03591 94 -------FPKGFRNEVQVVATVLSYDPENDPDILAIIGASAALAISGIPF---------------------------NGP 139 (684)
T ss_pred -------cCCCCCceEEEEEEEEecCcCCchHHHHHHHHHHHHHhcCCCc---------------------------CCC
Confidence 46778899999999999999874 7 99999999999999996 357
Q ss_pred ceEEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 151 PVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 151 Pi~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
+.++++|++++.+++|||.+|++.++..++|+.+. +.+.+.+.|+..++.+.|.++++.|.+.++++.+++++++++.
T Consensus 140 v~av~vg~idg~~ildPt~~E~~~s~~~l~va~t~--~~i~mie~~~~~i~e~~l~~al~~a~~~~~~i~~~~~~~~~~~ 217 (684)
T TIGR03591 140 IAAVRVGYIDGQYVLNPTVDELEKSDLDLVVAGTK--DAVLMVESEAKELSEEVMLGAIEFGHEEIQPVIEAIEELAEEA 217 (684)
T ss_pred eEEEEEEEECCEEEEcCCHHHHhhCCceEEEEccC--CcEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999887543 4466677777789999999999999999999999999988765
Q ss_pred c
Q 026528 231 D 231 (237)
Q Consensus 231 ~ 231 (237)
.
T Consensus 218 ~ 218 (684)
T TIGR03591 218 G 218 (684)
T ss_pred C
Confidence 4
No 15
>KOG1068 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.4e-23 Score=172.62 Aligned_cols=188 Identities=21% Similarity=0.183 Sum_probs=161.0
Q ss_pred CCCcEEEEEEEEEeeCCC--CCCCCCceEEEEEeeCCCCCCCcCCC-CCchhHHHHHHHHHHHHhcCCCCCCCCCCCCce
Q 026528 1 MGSTDVIASVKAELGRPS--AMQPDKGKVAIFVDCSPTAEPTFEGR-GGEELSAELSSALQHCLLGGKSGAGAGIDLSSL 77 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~--~~~p~~G~i~~~v~~~~~~~~~~~~~-~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L 77 (237)
.|||+|+|.|++|.+... ..+|+.+.++|.+.+++|.+-.++++ ..+.+..+++.+|+++|.+. |.++-+
T Consensus 44 ~GnTKVl~aV~GPre~~~~~~~~~~~a~lnc~~~~a~Fst~~r~~~~~~~rr~~e~s~~L~~afe~~-------I~~~ly 116 (245)
T KOG1068|consen 44 QGNTKVLCAVYGPREIRGKSARRPDKAVLNCEVSSAQFSTGDRKKRPKGDRREKELSLMLQQAFEPV-------ILLELY 116 (245)
T ss_pred cCCeEEEEEEeCCcccccccccccccceEEEEEeeeccccchhccCCCccHHHHHHHHHHHHHHHHH-------HHhhhC
Confidence 499999999999876432 23689999999999999988777653 34678999999999999876 655444
Q ss_pred eEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEE
Q 026528 78 VVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLT 157 (237)
Q Consensus 78 ~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~ 157 (237)
|. .+|+|.|+||++||+.+.+|++|+..||.|++||+. ++..++|.+
T Consensus 117 ---Pr---sqIDI~v~VleddG~~laa~inaatlAL~daGI~m~---------------------------D~i~~~t~~ 163 (245)
T KOG1068|consen 117 ---PR---SQIDIYVQVLEDDGSNLAAAINAATLALADAGIPMY---------------------------DLITACTAG 163 (245)
T ss_pred ---cc---ccceEEEEEEECCCccHHHHHHHHHHHHHHcCCChh---------------------------hhhhhceee
Confidence 53 379999999999999999999999999999999974 678899999
Q ss_pred EeCcEEEEcCChHHHhcCCCeEEEEEcCC-CcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 158 KVGKHYIVDATLEEESQMSSAVSISINRQ-GHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 158 ~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~-g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
+.++.+++|||..||......+||++-.+ ++|..+++.++ ++.+.|...++.|...|+++++.++..+.+.
T Consensus 164 l~~~~~l~Dl~~~eesa~~~~ltVa~l~~~~~i~~l~~~~~--~~~d~l~~vl~~a~~~c~~v~~~l~~~l~~~ 235 (245)
T KOG1068|consen 164 LADGTPLLDLTSLEESARAPGLTVAALPNREEIALLQLDER--LHCDHLETVLELAIAGCKRVYERLRLVLREH 235 (245)
T ss_pred ecCCccccccccchhhccCCceEEEEecCcceEEEEEecCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998999998654 56888888765 8899999999999999999998888877654
No 16
>PF01138 RNase_PH: 3' exoribonuclease family, domain 1 This Prosite family only includes Ribonuclease PH; InterPro: IPR001247 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) [], as well as in archaeal and eukaryotic RNA exosomes [, ], the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. This entry represents the phosphorolytic (PH) domain 1, which has a core 2-layer alpha/beta structure with a left-handed crossover, similar to that found in ribosomal protein S5. This domain is found in bacterial/organelle PNPases and in archaeal/eukaryotic exosomes []. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; PDB: 2C38_G 2BR2_O 2C37_M 3L7Z_A 2JEB_A 2C39_A 2JEA_A 2JE6_A 3U1K_A 4AM3_B ....
Probab=99.87 E-value=1.3e-21 Score=151.21 Aligned_cols=106 Identities=42% Similarity=0.581 Sum_probs=93.3
Q ss_pred CCCcEEEEEEEEEeeC-CCCCCC-CCceEEEEEeeCCCCCCCcCC-CCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCce
Q 026528 1 MGSTDVIASVKAELGR-PSAMQP-DKGKVAIFVDCSPTAEPTFEG-RGGEELSAELSSALQHCLLGGKSGAGAGIDLSSL 77 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~-p~~~~p-~~G~i~~~v~~~~~~~~~~~~-~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L 77 (237)
+|+|+|+|+|++++.. |...++ .+|++.++|+++|++.+.++. +.+++.+..++++|+++|++. +.+
T Consensus 23 ~G~T~V~~~V~~~~~~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-------~~~--- 92 (132)
T PF01138_consen 23 LGNTKVICSVKGPIEPPPSNERDDAEGRLTVEVEFSPFASPSFRRGGRPDEEERELSSLLERALRSS-------ILL--- 92 (132)
T ss_dssp ETTEEEEEEEEEEEEGCSCSTTSSSSEEEEEEEEECCCGSTSSSSSSSTHHHHHHHHHHHHHHHHHT-------BST---
T ss_pred ECCeEEEEEEEecccccchhcccCCCceEEEEEEeccccccccccccccchhHHHHHHHHhhhcccc-------ccc---
Confidence 5999999999999998 555544 369999999999999887752 457788999999999999987 433
Q ss_pred eEEcCeEEEEEEEEEEEEcCCC-CHHHHHHHHHHHHHhcCCCc
Q 026528 78 VVVEGKVCWDLYIDGLVISSDG-NLLDALGAAIKAALSNTGIP 119 (237)
Q Consensus 78 ~I~~g~~~w~l~idv~VL~~dG-nl~da~~~A~~~AL~~~~iP 119 (237)
+++.+|.|+|+++||++|| |++|+|++|+++||+|++||
T Consensus 93 ---~~~~~~~i~v~v~vl~~dG~~~~~a~~~A~~~AL~~~~iP 132 (132)
T PF01138_consen 93 ---EGYPRWQIHVDVQVLSDDGGNLLDAAINAACLALLDAGIP 132 (132)
T ss_dssp ---TTTSSEEEEEEEEEEECSSSSHHHHHHHHHHHHHHHHTCS
T ss_pred ---cccCceEEEEEEEEEecCCCCHHHHHHHHHHHHHHhcCCC
Confidence 7788999999999999999 99999999999999999998
No 17
>KOG1069 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.1e-19 Score=144.39 Aligned_cols=180 Identities=17% Similarity=0.204 Sum_probs=144.0
Q ss_pred CCCcEEEEEEEEEeeCC-CCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeE
Q 026528 1 MGSTDVIASVKAELGRP-SAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVV 79 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p-~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I 79 (237)
-|+|+|+|+|+||.... ....|++..+. |-.-|.. +.....++.+++.|+++|.+. +-+ .+
T Consensus 26 qgdT~V~c~V~GP~dvk~r~E~~~katle--Vi~rp~~------G~~~~~eK~~e~iI~~tl~~~-------I~l---~l 87 (217)
T KOG1069|consen 26 QGDTKVICSVYGPIDVKARQEDPEKATLE--VIWRPKS------GVNGTVEKVLERIIRKTLSKA-------IIL---EL 87 (217)
T ss_pred cCCcEEEEEeeCCcchhhcccCchhceEE--EEEeccc------CcchHHHHHHHHHHHHHHHHh-------hee---ee
Confidence 38999999999998742 23345665444 4445544 233456789999999999765 543 34
Q ss_pred EcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEe
Q 026528 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159 (237)
Q Consensus 80 ~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~ 159 (237)
.|.+ .+.|.++|+++||+.+.+|++|+++||.|++||+ ++++.++.++..
T Consensus 88 ~Prt---~iqVsiqvv~ddgs~LacaINaAclALvDaGIpl---------------------------~~mfcai~~~~~ 137 (217)
T KOG1069|consen 88 YPRT---TIQVSIQVVEDDGSTLACAINAACLALVDAGIPL---------------------------RSMFCAISCALH 137 (217)
T ss_pred cCCc---eEEEEEEEEecCCcchHHHHHHHHHHHHhcCCch---------------------------HHhhhhceEEEe
Confidence 4644 6999999999999999999999999999999995 578999999988
Q ss_pred Cc-EEEEcCChHHHhcCCCeEEEEE--c--CCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 160 GK-HYIVDATLEEESQMSSAVSISI--N--RQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 160 ~~-~~l~Dpt~~EE~~~~~~l~i~~--~--~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
++ .+++|||..+|+.+.+..++++ . +.-+++.+...| .++.++|..++++|...+++++.++++.+++-
T Consensus 138 ~d~~lv~Dpt~~qek~~~~~~~lsf~~~~~~~~~vi~s~t~G--~~~~d~lf~~le~a~~~~~~~f~f~r~~~q~~ 211 (217)
T KOG1069|consen 138 EDGVLVLDPTAKQEKISTARATLSFEGGSLGEPKVIISETNG--EKSEDQLFYVLELAQAAAQSLFPFYREVLQRK 211 (217)
T ss_pred cCccEEECCcHHhhhhhhceEEEEEecCCCCCcceEEEeccC--CCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 65 8999999999998877777766 2 234688887776 48999999999999999999999999998763
No 18
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=99.81 E-value=5.4e-18 Score=163.77 Aligned_cols=191 Identities=11% Similarity=0.054 Sum_probs=153.6
Q ss_pred CCCcEEEEEEEE-EeeCC-----CCCCCCCceEEEEEeeCCCCCCCcC-CCCCchhHHHHHHHHHHHHhcCCCCCCCCCC
Q 026528 1 MGSTDVIASVKA-ELGRP-----SAMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGID 73 (237)
Q Consensus 1 lG~T~Vi~~V~~-ei~~p-----~~~~p~~G~i~~~v~~~~~~~~~~~-~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id 73 (237)
+|+|+|+|+|+. +...+ ....+..+.+.++++++|++...+. .+++++.+...+++++|+|+.. ++
T Consensus 469 ~G~TqVLatVtlGp~~~~q~~d~l~~~~~~~~f~~~y~fPPfs~ge~~r~g~psrREi~hg~L~eRALrpv-------ip 541 (891)
T PLN00207 469 RGETQALAVVTLGDKQMAQRIDNLVDADEVKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPI-------LP 541 (891)
T ss_pred ECCeEEEEEEEecCccccccccccccccceeeEEEEEEcCCCCCccccCCCCCCHHHHHHHHHHHHHHHHh-------CC
Confidence 499999999974 33211 1122567889999999999875443 3456788999999999999875 55
Q ss_pred CCceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceE
Q 026528 74 LSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVI 153 (237)
Q Consensus 74 ~e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~ 153 (237)
.+.+ +.|.|+|++.||++||+...|+++|+.+||++++||+ +++..+
T Consensus 542 ~~~~------fP~tIrV~~~VLesDGSssmAaV~aaSLALmDAGIPm---------------------------k~~VAG 588 (891)
T PLN00207 542 SEDD------FPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPV---------------------------KCPIAG 588 (891)
T ss_pred cccC------CCEEEEEEEEEEeCCCChHHHHHHHHHHHHHhcCCCc---------------------------cCceeE
Confidence 4322 4589999999999999999999999999999999996 356678
Q ss_pred EEEEEe-C--------cE-EEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCC-cccCHHHHHHHHHHHHHHHHHHHHH
Q 026528 154 TTLTKV-G--------KH-YIVDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDK 222 (237)
Q Consensus 154 vT~~~~-~--------~~-~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~-~~i~~~~l~~~i~~a~~~~~~l~~~ 222 (237)
+++|++ + .. +++||+..|+..++..+.|+-+. ..|+.++..+. ..++.+.|.++++.|.+.+.++.+.
T Consensus 589 vsvGli~d~~~~~~~g~~~IL~Dp~g~Ed~~gdmDfkVAgT~-~gIt~iqmd~k~~gis~e~l~eAL~~A~~g~~~Il~~ 667 (891)
T PLN00207 589 IAMGMVLDTEEFGGDGSPLILSDITGSEDASGDMDFKVAGNE-DGITAFQMDIKVGGITLPIMERALLQAKDGRKHILAE 667 (891)
T ss_pred EEEEEEecccccCCCCcEEEEeCCCHHHHhcCCceEEEEecc-cceEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 2 23 56799999999999999999765 47888876543 3589999999999999999999999
Q ss_pred HHHHHHhccc
Q 026528 223 LDSEIAAADA 232 (237)
Q Consensus 223 l~~~l~~~~~ 232 (237)
+++.+..-..
T Consensus 668 M~~~i~~pr~ 677 (891)
T PLN00207 668 MSKCSPPPSK 677 (891)
T ss_pred HHHHHhhhhh
Confidence 9999876543
No 19
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=99.76 E-value=1e-16 Score=152.16 Aligned_cols=188 Identities=11% Similarity=0.089 Sum_probs=152.9
Q ss_pred CCCcEEEEEEEE---EeeC-C-CCCCCCCceEEEEEeeCCCCCCCcCC-CCCchhHHHHHHHHHHHHhcCCCCCCCCCC-
Q 026528 1 MGSTDVIASVKA---ELGR-P-SAMQPDKGKVAIFVDCSPTAEPTFEG-RGGEELSAELSSALQHCLLGGKSGAGAGID- 73 (237)
Q Consensus 1 lG~T~Vi~~V~~---ei~~-p-~~~~p~~G~i~~~v~~~~~~~~~~~~-~~~~~~~~~ls~~L~~~l~~~~~~~~~~id- 73 (237)
.|+|+|+|.+.. +-.. + .....+.+.+.|+++|+||++..... ++++.++..++++++++|... ++
T Consensus 366 ~G~Tqvl~~~tlG~~~~~q~~~~l~~~~~~~~~~~YnfpPFSt~er~~~~~~~RReighg~La~rALe~v-------I~~ 438 (719)
T TIGR02696 366 RGETQILGVTTLNMLKMEQQIDSLSPETSKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPV-------LPS 438 (719)
T ss_pred ecCcEEEEEEeCCCchhhhhcccccccccceEEEEEeCCCCcccCCCCCCCCCccHHHHHHHHHHHHHHh-------hCc
Confidence 499999998764 1110 0 01124578999999999999875442 235678999999999999976 76
Q ss_pred CCceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceE
Q 026528 74 LSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVI 153 (237)
Q Consensus 74 ~e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~ 153 (237)
++.+ | + .+.+...||++||+..-|++.|+.+||+|+++|+ +++..+
T Consensus 439 ~e~f---P--~--TIrvvseVLeSdGSss~AsIcaasLALmDAGVPm---------------------------kd~VAg 484 (719)
T TIGR02696 439 REEF---P--Y--AIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPL---------------------------KAPVAG 484 (719)
T ss_pred HhhC---C--C--EEEEEEEeeccCCcHHHHHHHHHHHHHHHcCcch---------------------------hheeeE
Confidence 4666 3 2 3788889999999999999999999999999997 367788
Q ss_pred EEEEEeCc--------EEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCC-cccCHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 154 TTLTKVGK--------HYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDKLD 224 (237)
Q Consensus 154 vT~~~~~~--------~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~-~~i~~~~l~~~i~~a~~~~~~l~~~l~ 224 (237)
+++|++++ .+|+||+..|+...+..+.++.+ .+.|+.++..|. .+++.+.|.+++++|.+.+.++++.++
T Consensus 485 is~Gli~e~~~~~~~~~iL~Di~g~ED~~Gdmdfkvagt-~~gIt~lQmd~ki~gi~~e~l~~aL~~A~~g~~~Il~~m~ 563 (719)
T TIGR02696 485 IAMGLISDEVDGETRYVALTDILGAEDAFGDMDFKVAGT-SEFVTALQLDTKLDGIPASVLASALKQARDARLAILDVMA 563 (719)
T ss_pred EEEEEeccccCCCcceeEEeCCCchhhhcCCceEEEEec-CCCEEEEEEEeeECCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999843 28999999999999888888765 478999988875 247999999999999999999999999
Q ss_pred HHHHhc
Q 026528 225 SEIAAA 230 (237)
Q Consensus 225 ~~l~~~ 230 (237)
++|..-
T Consensus 564 ~al~~p 569 (719)
T TIGR02696 564 EAIDTP 569 (719)
T ss_pred HHHhCc
Confidence 999876
No 20
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=99.68 E-value=5.4e-15 Score=143.18 Aligned_cols=183 Identities=15% Similarity=0.082 Sum_probs=145.9
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCC-----C-CcC--CCCCchhHHHHHHHHHHHHhcCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAE-----P-TFE--GRGGEELSAELSSALQHCLLGGKSGAGAGI 72 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~-----~-~~~--~~~~~~~~~~ls~~L~~~l~~~~~~~~~~i 72 (237)
+|+|.|+|+|-..-. | +++.+++-+.|+|-...+ | .|- .++|++.+..++++++|.|++. |
T Consensus 110 ~g~t~vl~t~~~~~~-~---~~~~dF~PLtV~y~Ek~~AaGkipggf~kREgrp~d~eiL~sRlIdR~lRPl-------f 178 (891)
T PLN00207 110 DGETIVYTSVCLADV-P---SEPSDFFPLSVHYQERFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPT-------M 178 (891)
T ss_pred ECCeEEEEEEEeccC-C---CCCCCccceeEeeeeehhhcCccCCceeccCCCCChHHHHHHHHHCccchhh-------c
Confidence 499999999876422 2 345678888888754332 2 232 2356788999999999999876 6
Q ss_pred CCCceeEEcCeEEEEEEEEEEEEcCCCC--HHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCC
Q 026528 73 DLSSLVVVEGKVCWDLYIDGLVISSDGN--LLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150 (237)
Q Consensus 73 d~e~L~I~~g~~~w~l~idv~VL~~dGn--l~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (237)
+.+-+ -...|.++||++||+ +.-++++|+.+||.++.||+ +++
T Consensus 179 p~~~~--------~etQI~i~VLsaDg~~~pd~~AInAASaAL~~SgIP~---------------------------~gp 223 (891)
T PLN00207 179 PKGFY--------HETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPN---------------------------LKA 223 (891)
T ss_pred cccCC--------CCcEEEEEEEeeCCCCChhhHHHHHHHHHHHhhCCCc---------------------------cCc
Confidence 55444 257778899999997 66789999999999999996 355
Q ss_pred ceEEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 151 PVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 151 Pi~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
..+|++|.+++.+++|||.+|++.++..|.|+.+.+ .|+.++-.| ..++.+.|.++++.|.+.++.+++++++.+++.
T Consensus 224 VaAVrVG~idg~~VlnPt~~E~~~s~ldLvvagt~~-~IvMIE~~a-~e~see~l~~Al~~a~~aik~i~~~~~el~~~~ 301 (891)
T PLN00207 224 IAGVRVGLIGGKFIVNPTTKEMEESELDLIMAGTDS-AILMIEGYC-NFLPEEKLLEAVEVGQDAVRAICKEIEVLVKKC 301 (891)
T ss_pred eEEEEEEEECCEEEECCCHHHHhcCCeeEEEEEcCC-eEEEEEcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667999999999999999999999999998877754 576665544 568999999999999999999999999988766
Q ss_pred c
Q 026528 231 D 231 (237)
Q Consensus 231 ~ 231 (237)
.
T Consensus 302 g 302 (891)
T PLN00207 302 G 302 (891)
T ss_pred C
Confidence 4
No 21
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) [], as well as in archaeal and eukaryotic RNA exosomes [, ], the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. This entry represents the phosphorolytic (PH) domain 2, which has a core 3-layer alpha/beta/alpha structure. This domain is found in bacterial/organelle PNPases and in archaeal/eukaryotic exosomes []. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 1E3H_A 1E3P_A 2NN6_E 2WNR_A 3U1K_B 2BA0_H 2BA1_H 3M85_G 3M7N_H 3H1C_K ....
Probab=99.54 E-value=3.7e-14 Score=97.25 Aligned_cols=67 Identities=30% Similarity=0.487 Sum_probs=61.3
Q ss_pred CCceEEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcc-cCHHHHHHHHHHHHHH
Q 026528 149 GVPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVG-LDPSVILDMISVANFV 215 (237)
Q Consensus 149 ~~Pi~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~-i~~~~l~~~i~~a~~~ 215 (237)
++|+++|++++++.+++|||.+||.++++.+++++++++++|.+++.|+.. ++++.+.+|+++|.+.
T Consensus 1 ~~~~avt~~~i~~~~v~Dpt~~Ee~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~i~~A~~~ 68 (68)
T PF03725_consen 1 DPPVAVTVGIIDGELVVDPTAEEESLSDSSLTLAVDGTGNICTLQKSGGGSELSEDQLEEAIELAKKA 68 (68)
T ss_dssp SEEEEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTSSEEEEEEEEESSEEEHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEECCEEEECCCHHHHhhcCCcEEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999999999999999999999876 9999999999999874
No 22
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=99.23 E-value=1.1e-09 Score=104.62 Aligned_cols=182 Identities=13% Similarity=0.063 Sum_probs=141.8
Q ss_pred CCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCC-----C-CcC--CCCCchhHHHHHHHHHHHHhcCCCCCCCCCC
Q 026528 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAE-----P-TFE--GRGGEELSAELSSALQHCLLGGKSGAGAGID 73 (237)
Q Consensus 2 G~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~-----~-~~~--~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id 73 (237)
|+|.|+|++...-. .+++.+++-+.|+|-...+ | .|- -++|++.+...+|+++|.+++. |
T Consensus 40 G~t~vl~t~~~~~~----~~~~~dF~PLtV~y~Ek~yA~GkiPggf~kREgrps~~eiL~sRliDR~iRPL-------F- 107 (719)
T TIGR02696 40 DETMLLSATTASKQ----PKDQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAILTCRLIDRPLRPS-------F- 107 (719)
T ss_pred CCeEEEEEEEecCC----CCCCCCCcceeEeeeehhhhcCccCCceeccCCCCChhhhHHHHhhCCCCccC-------C-
Confidence 99999999876322 2345678888888764332 2 232 2356788889999999988764 3
Q ss_pred CCceeEEcCeEEEEEEEEEEEEcCCC-CHHH-HHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCc
Q 026528 74 LSSLVVVEGKVCWDLYIDGLVISSDG-NLLD-ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVP 151 (237)
Q Consensus 74 ~e~L~I~~g~~~w~l~idv~VL~~dG-nl~d-a~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P 151 (237)
|..++.-.+|-++||+.|+ |..| .+++|+.+||.=..||- +-|
T Consensus 108 -------p~~~~~e~qi~~~vls~D~~~~pdvla~~~ASaAl~iSdiPf----------------------------~gP 152 (719)
T TIGR02696 108 -------VKGLRNEVQVVVTVLSLNPDHLYDVVAINAASASTQLAGLPF----------------------------SGP 152 (719)
T ss_pred -------CCCCCcceEEEEEEEEcCCCCChHHHHHHHHHHHHHhcCCCC----------------------------CCc
Confidence 5555667999999999987 6667 67799999999999883 235
Q ss_pred e-EEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcC----CCcEEEEEec-----------CCcccCHHHHHHHHHHHHHH
Q 026528 152 V-ITTLTKVGKHYIVDATLEEESQMSSAVSISINR----QGHICGMIKR-----------GGVGLDPSVILDMISVANFV 215 (237)
Q Consensus 152 i-~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~----~g~i~~i~~~-----------G~~~i~~~~l~~~i~~a~~~ 215 (237)
+ +|-+|.+++.+++.||.+|-+.++-.++|+-++ ++.++.+.-. |+..++.+.|.+++..|++.
T Consensus 153 v~~vrVg~i~g~~viNPt~~~~~~s~ldLvvagt~~~~~~~~i~MiE~~a~~~~~~~~~~~a~e~~e~~~~~Ai~~a~~~ 232 (719)
T TIGR02696 153 IGGVRVALIDGQWVAFPTHEQLEGAVFDMVVAGRVLENGDVAIMMVEAEATEKTWDLVKGGAEAPTEEVVAEGLEAAKPF 232 (719)
T ss_pred eEEEEEEEECCEEEECcCHHHHhhCeeeEEEEeeecCCCCccEEEEecCCccccccccccCCCCCCHHHHHHHHHHHHHH
Confidence 5 589999999999999999999888888888775 3367666641 55689999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 026528 216 SRQLMDKLDSEIAAA 230 (237)
Q Consensus 216 ~~~l~~~l~~~l~~~ 230 (237)
.+.+.+++++..+..
T Consensus 233 i~~~~~~~~~l~~~~ 247 (719)
T TIGR02696 233 IKVLCRAQADLAEKA 247 (719)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999976544
No 23
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=4.9e-07 Score=85.30 Aligned_cols=182 Identities=19% Similarity=0.183 Sum_probs=136.5
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCC-----C-CcC--CCCCchhHHHHHHHHHHHHhcCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAE-----P-TFE--GRGGEELSAELSSALQHCLLGGKSGAGAGI 72 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~-----~-~~~--~~~~~~~~~~ls~~L~~~l~~~~~~~~~~i 72 (237)
+|+|.|++++.+.-. ++...++-+.|+|-...+ | .|- .++|++.+...+|+++|-+++.
T Consensus 35 ~gdt~vl~t~~~~~~-----~~~~dF~PLtV~y~Ek~yaaGkiPGgf~kREGrpse~e~L~sRLIDRpiRPl-------- 101 (692)
T COG1185 35 YGDTVVLATVVASKP-----KEGQDFFPLTVNYEEKTYAAGKIPGGFFKREGRPSEKEILTSRLIDRPIRPL-------- 101 (692)
T ss_pred ECCeEEEEEEeecCC-----CCCCCccceeEeeeeehhccCcCCCcccccCCCCCccchhhhhhcccccccc--------
Confidence 599999999988642 245667777887653222 2 221 2345677888888887777643
Q ss_pred CCCceeEEcCeEEEEEEEEEEEEcCCC-CHHH-HHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCC
Q 026528 73 DLSSLVVVEGKVCWDLYIDGLVISSDG-NLLD-ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150 (237)
Q Consensus 73 d~e~L~I~~g~~~w~l~idv~VL~~dG-nl~d-a~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (237)
+|..+.--+.|-.+|++.|+ +..| .+++++.+||.=.++|-. ..
T Consensus 102 -------Fp~g~~~evqIv~tvls~D~~~~pdi~a~~gaSaAl~is~iPf~---------------------------gp 147 (692)
T COG1185 102 -------FPKGFRNEVQIVNTVLSVDPENDPDILAMVGASAALSLSGIPFL---------------------------GP 147 (692)
T ss_pred -------cchhhccceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCcc---------------------------Cc
Confidence 34455557888999999887 4445 777999999999999841 23
Q ss_pred ceEEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 151 PVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 151 Pi~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
.-++++|++++.+++.||.+|-+.+.-.++|+-+++ .|. |...|...++.+.+..++..+++..+.+.+++++.....
T Consensus 148 i~~vrvg~idg~~vlNPt~~e~~~s~lDlvVAGT~~-aV~-MVE~~a~~l~E~~ml~Av~fg~~~~~~~~~~qe~l~~~~ 225 (692)
T COG1185 148 IGAVRVGYIDGIFVLNPTLEELEESKLDLVVAGTKD-AVN-MVESEADELDEEVMLEAVEFGHEAIQSVINAQEELALEV 225 (692)
T ss_pred cceEEEEEECCEEEECCChHHhhhcceeeEecCChh-hhh-eeecccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345999999999999999999988777777776654 344 445666789999999999999999999999999887655
Q ss_pred c
Q 026528 231 D 231 (237)
Q Consensus 231 ~ 231 (237)
-
T Consensus 226 g 226 (692)
T COG1185 226 G 226 (692)
T ss_pred C
Confidence 4
No 24
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=98.36 E-value=1.2e-05 Score=74.26 Aligned_cols=179 Identities=17% Similarity=0.231 Sum_probs=128.2
Q ss_pred CCcEEEEEEEEEeeCCC-----CCCCCCc-eEEEEEeeCCCCCCCcC-CCCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 2 GSTDVIASVKAELGRPS-----AMQPDKG-KVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 2 G~T~Vi~~V~~ei~~p~-----~~~p~~G-~i~~~v~~~~~~~~~~~-~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
|.|+|+|+|+..-.+.. ...+++| ++.++.+|+|.++.... -++...++.-=..+-+++|...
T Consensus 390 GqTQvlctVtl~s~e~a~klD~l~~~~~~~~FmLhY~FPPyat~Evgkig~~nRRE~GhgaLAEkaL~~v---------- 459 (760)
T KOG1067|consen 390 GQTQVLCTVTLDSLESAQKLDSLIGPDNGINFMLHYEFPPYATNEVGKIGGLNRRELGHGALAEKALLPV---------- 459 (760)
T ss_pred CceeEEEEEEcCCHHHhhhhhhhccCccCceEEEEeccCCccccccccccCCcccccCchhHhhhhhhcc----------
Confidence 89999999997432211 1234555 99999999999876432 1122333333345556667543
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
+|..+=|.|+|.-.||+++|+--=|..-+-..||+|+++|.- .-...+
T Consensus 460 -----lP~dfPftIRv~SeVleSnGSsSMASvCGGslALmDaGvPv~---------------------------a~vAGv 507 (760)
T KOG1067|consen 460 -----LPEDFPFTIRVTSEVLESNGSSSMASVCGGSLALMDAGVPVS---------------------------AHVAGV 507 (760)
T ss_pred -----CcccCceEEEEeeeeeecCCcchHHhhhcchhhhhhcCCccc---------------------------ccccee
Confidence 344555789999999999998777777788899999999941 122335
Q ss_pred EEEEe----------Cc-EEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHH
Q 026528 155 TLTKV----------GK-HYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKL 223 (237)
Q Consensus 155 T~~~~----------~~-~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l 223 (237)
.+|++ ++ .++-|..-.|....+=.+-|+-+++| +..+ .++.+.+.+.++.|...-.+|.+.+
T Consensus 508 aiGlvt~td~e~g~i~dyriltDIlGiEd~~GDMDFKiAGt~dG-vTA~------gi~l~Iv~eal~~a~~ar~~Il~~m 580 (760)
T KOG1067|consen 508 AIGLVTKTDPEKGEIEDYRILTDILGIEDYNGDMDFKIAGTNDG-VTAL------GIPLKIVMEALQKAREARLQILDIM 580 (760)
T ss_pred EEEeEeccCcccCCcccceeehhhcchhhhcCCcceeeccccCc-ceec------CCcHHHHHHHHHhhhHHHHHHHHHH
Confidence 55543 22 56779999999998888899888765 3333 3888999999999999999999999
Q ss_pred HHHHHh
Q 026528 224 DSEIAA 229 (237)
Q Consensus 224 ~~~l~~ 229 (237)
.+.+..
T Consensus 581 ~k~i~~ 586 (760)
T KOG1067|consen 581 EKNINS 586 (760)
T ss_pred HhhcCC
Confidence 887654
No 25
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=98.07 E-value=5.4e-05 Score=70.09 Aligned_cols=180 Identities=18% Similarity=0.171 Sum_probs=123.3
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCC------CCcCC--CCCchhHHHHHHHHHHHHhcCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAE------PTFEG--RGGEELSAELSSALQHCLLGGKSGAGAGI 72 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~------~~~~~--~~~~~~~~~ls~~L~~~l~~~~~~~~~~i 72 (237)
+|+|.|+++|-+.-. |+ |.+ ++-+.|++....+ ..|.. +++.+.+....+++.+-++.. +
T Consensus 77 ~GeT~Vm~Tv~~a~~-PS---p~q-FlPL~VdYqeK~aAvGRip~~fmRREg~tkdkEiL~~rLidrsirpl-------f 144 (760)
T KOG1067|consen 77 MGETAVMTTVVLADK-PS---PPQ-FLPLVVDYQEKFAAVGRIPGNFMRREGRTKDKEILTGRLIDRPIRPL-------F 144 (760)
T ss_pred cCCeEEEEEEEecCC-CC---ccc-cceEEEehhhhhhhhccCCCcccccccCCcchhheeeeccccccccC-------C
Confidence 699999999977533 22 333 7778887753221 12321 234566666666666666543 3
Q ss_pred CCCceeEEcCeEEEEEEEEEEEEcCCC-CHHH-HHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCC
Q 026528 73 DLSSLVVVEGKVCWDLYIDGLVISSDG-NLLD-ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150 (237)
Q Consensus 73 d~e~L~I~~g~~~w~l~idv~VL~~dG-nl~d-a~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (237)
+. -++....+-..+|..|| +--| .+++|+.+||.-..+|- .-
T Consensus 145 p~--------g~~~etqi~~n~Ls~dG~~~pdvlainaas~Al~lsdvpw----------------------------~g 188 (760)
T KOG1067|consen 145 PK--------GFYHETQILCNVLSSDGVHDPDVLAINAASAALSLSDVPW----------------------------NG 188 (760)
T ss_pred cc--------cchhHHHHHhhheecccccCchHHHHhHHHHHhhhccCCC----------------------------CC
Confidence 32 22222333345566677 2233 67799999999888873 23
Q ss_pred ce-EEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026528 151 PV-ITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229 (237)
Q Consensus 151 Pi-~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~ 229 (237)
|+ .+-+|.+++.+++.||..|-+.++-.+.++-. +.+++.+.-.+ ..+..+.|.++++.+.+.++.+.+-+....+.
T Consensus 189 pig~vRigLi~Ge~vVNPT~kEmssS~Lnlvvagt-~~~~vmle~~s-~~i~qqdl~~Aikvg~~~~q~~i~~i~~L~k~ 266 (760)
T KOG1067|consen 189 PIGAVRIGLIDGEFVVNPTRKEMSSSQLNLVVAGT-KSQTVMLEGSS-NNILQQDLLHAIKVGVKEAQQIIQGIERLAKK 266 (760)
T ss_pred ceeeeEeeeecceEEeCcchhhhhhccceeEEEec-cceEEEEEccc-ccccHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 44 48999999999999999999998888888877 45666665554 46888999999999999999999888877665
Q ss_pred c
Q 026528 230 A 230 (237)
Q Consensus 230 ~ 230 (237)
.
T Consensus 267 ~ 267 (760)
T KOG1067|consen 267 Y 267 (760)
T ss_pred h
Confidence 3
No 26
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.077 Score=50.96 Aligned_cols=190 Identities=11% Similarity=0.095 Sum_probs=124.3
Q ss_pred CCcEEEEEEEEEeeCCC-----CCCCCCceEEEEEeeCCCCCCCcC-CCCCchhHHHHHHHHHHHHhcCCCCCCCCCC-C
Q 026528 2 GSTDVIASVKAELGRPS-----AMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGID-L 74 (237)
Q Consensus 2 G~T~Vi~~V~~ei~~p~-----~~~p~~G~i~~~v~~~~~~~~~~~-~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id-~ 74 (237)
|.|+.++.++.--..-. ...+..-++-.+.+|+|++.-.-. -+.|..++.-=.++-++++... ++ .
T Consensus 344 GeTQal~v~TLG~~~d~Qvid~l~~e~~krfm~hYNFPp~SvGE~g~~g~p~RREiGHG~LA~Ral~~v-------lp~~ 416 (692)
T COG1185 344 GETQALVVVTLGTPRDAQVIDILEGEYKKRFLLHYNFPPFSVGETGRMGSPGRREIGHGALAERALAPV-------LPSE 416 (692)
T ss_pred CCCcceEEEEcCCcchhhhhhhccchhhhheeeeccCCCCCccccCCCCCCCcccccCchhhHHHHhhh-------CCch
Confidence 67777777765221110 011234478899999998842111 1112222333344455556544 33 3
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
+++ -+.+++---+++++|+--=|..-+..+||+++++|.- ...-.+
T Consensus 417 e~f-------pytiRvVsEi~eSNGSsSmaSVCg~sLaLmdAGVPIk---------------------------~pVAGI 462 (692)
T COG1185 417 EEF-------PYTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIK---------------------------APVAGI 462 (692)
T ss_pred hcC-------CceeeeeehhhcccCcccchhhhhhHHHHHhCCCccc---------------------------ccccch
Confidence 444 2468888899999999888888899999999999952 122235
Q ss_pred EEEEeCc----EEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEec-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026528 155 TLTKVGK----HYIVDATLEEESQMSSAVSISINRQGHICGMIKR-GGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229 (237)
Q Consensus 155 T~~~~~~----~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~-G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~ 229 (237)
..|++-+ .++-|...+|....+=.+-|+=+.+| +..++.- --..++.+.|.+++..|+....++...+.+++.+
T Consensus 463 AMGLI~eg~~~~vLsDI~G~EDhlGDMDFKVAGT~~G-iTAlQMDiKi~Git~eim~~AL~QAk~aRlhIL~~M~~ai~~ 541 (692)
T COG1185 463 AMGLIKEGDKYAVLSDILGDEDHLGDMDFKVAGTDDG-ITALQMDIKIKGITKEIMKKALEQAKGARLHILIVMNEAISE 541 (692)
T ss_pred hccceecCCceEeeccccccccccCCceeEEecCCCc-ceeeeeeeeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666522 47778888898777777888877766 3233221 1123899999999999999999999999999987
Q ss_pred cccc
Q 026528 230 ADAD 233 (237)
Q Consensus 230 ~~~~ 233 (237)
-.++
T Consensus 542 pr~e 545 (692)
T COG1185 542 PRKE 545 (692)
T ss_pred hhhh
Confidence 6543
No 27
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=78.57 E-value=18 Score=25.60 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=31.9
Q ss_pred cCCCeEEEEEcCCCcEEEEEecCCc--ccCHHHHHHHHHHHHHHHHHH
Q 026528 174 QMSSAVSISINRQGHICGMIKRGGV--GLDPSVILDMISVANFVSRQL 219 (237)
Q Consensus 174 ~~~~~l~i~~~~~g~i~~i~~~G~~--~i~~~~l~~~i~~a~~~~~~l 219 (237)
..++.++|.+|.+|++..+...-.. +.+++.|.+++..|...+..-
T Consensus 27 s~~g~V~V~v~g~g~v~~i~i~~~~~~~~~~~~L~~~I~~A~n~A~~~ 74 (93)
T PF02575_consen 27 SGDGLVTVTVNGNGEVVDIEIDPSALRPLDPEELEDLIVEAVNDAQKK 74 (93)
T ss_dssp ETCCTEEEEEETTS-EEEEEE-GGGGCTS-HHHHHHHHHHHHHHHHHH
T ss_pred ECCCEEEEEEecCceEEEEEEehHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999998886542 377888887777666555443
No 28
>PRK00153 hypothetical protein; Validated
Probab=54.70 E-value=57 Score=23.75 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=33.0
Q ss_pred hcCCCeEEEEEcCCCcEEEEEecCCc--ccCHHHHHHHHHHHHHHHHHH
Q 026528 173 SQMSSAVSISINRQGHICGMIKRGGV--GLDPSVILDMISVANFVSRQL 219 (237)
Q Consensus 173 ~~~~~~l~i~~~~~g~i~~i~~~G~~--~i~~~~l~~~i~~a~~~~~~l 219 (237)
+..++.++|.++.++++..+...-.. +-+++.|..++-.|...+.+=
T Consensus 34 ~s~~G~V~V~v~G~~~v~~i~Id~~ll~~~d~e~LedlI~~A~n~A~~~ 82 (104)
T PRK00153 34 EAGGGLVKVTMTGKKEVKRVKIDPSLVDPEDVEMLEDLILAAFNDALRK 82 (104)
T ss_pred EECCCeEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999998875421 245777777777666555543
No 29
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=42.00 E-value=71 Score=25.45 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHH
Q 026528 177 SAVSISINRQGHICGMIKRGGVGLDPSVILDMISVAN 213 (237)
Q Consensus 177 ~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~ 213 (237)
+...|++|++|+|..+ +.| .++++++++.+.+..
T Consensus 125 ~SaiiVlDK~G~V~F~-k~G--~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 125 SSAIIVLDKQGKVQFV-KEG--ALSPAEVQQVIALLK 158 (160)
T ss_pred CceEEEEcCCccEEEE-ECC--CCCHHHHHHHHHHHh
Confidence 3567788999988877 555 499999999988754
No 30
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=41.71 E-value=69 Score=23.35 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=27.6
Q ss_pred hcCCCeEEEEEcCCCcEEEEEecCCc-ccCHHHHHHHHHHHHHHH
Q 026528 173 SQMSSAVSISINRQGHICGMIKRGGV-GLDPSVILDMISVANFVS 216 (237)
Q Consensus 173 ~~~~~~l~i~~~~~g~i~~i~~~G~~-~i~~~~l~~~i~~a~~~~ 216 (237)
....+.++|.++.++++..+...-.. .-+.+.|..++-.|...+
T Consensus 36 ~sggGlV~V~~~G~~~v~~v~Id~~~l~~d~e~LedlI~~A~N~A 80 (102)
T TIGR00103 36 KSGAGLVTVTINGNLELKSIEIDPSLLEEDKEALEDMITEALNDA 80 (102)
T ss_pred EECCCEEEEEEEcCceEEEEEECHHHHhCCHHHHHHHHHHHHHHH
Confidence 34567899999999999988754210 024455555555554444
No 31
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=41.00 E-value=52 Score=19.95 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=25.1
Q ss_pred cCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 195 RGGVGLDPSVILDMISVANFVSRQLMDKLDS 225 (237)
Q Consensus 195 ~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~ 225 (237)
.|...++.+.|..........+|.+.+.|++
T Consensus 11 ~G~~ql~ESLLdrItRklr~gwKRl~~iLnQ 41 (45)
T PF02061_consen 11 MGCPQLSESLLDRITRKLRDGWKRLWDILNQ 41 (45)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444567899999999999999999988764
No 32
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=33.54 E-value=69 Score=19.48 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=27.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026528 199 GLDPSVILDMISVANFVSRQLMDKLDSEIAA 229 (237)
Q Consensus 199 ~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~ 229 (237)
.++.+.+.++-++|.+......++++++|+.
T Consensus 8 ~l~~el~~~L~~ls~~t~i~~S~Ll~eAle~ 38 (44)
T PF12651_consen 8 SLDKELYEKLKELSEETGIPKSKLLREALED 38 (44)
T ss_pred ecCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5889999999999999988888998888875
No 33
>PHA02762 hypothetical protein; Provisional
Probab=29.37 E-value=1.2e+02 Score=19.49 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=19.1
Q ss_pred HhcCCCeEEEEEcCCCcEEEEEec
Q 026528 172 ESQMSSAVSISINRQGHICGMIKR 195 (237)
Q Consensus 172 E~~~~~~l~i~~~~~g~i~~i~~~ 195 (237)
.....+.+||.++.+|++.+++..
T Consensus 23 s~eg~afvtigide~g~iayisie 46 (62)
T PHA02762 23 SFEGEAFVTIGIDENDKISYISIE 46 (62)
T ss_pred cccccEEEEEeECCCCcEEEEEec
Confidence 334567899999999999998754
No 34
>PTZ00056 glutathione peroxidase; Provisional
Probab=28.00 E-value=2.3e+02 Score=23.06 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=30.0
Q ss_pred EEEEEcCCCcEEEEEecCCcccCHHHHHHHHH--HHHHHHHHHHHHHHH
Q 026528 179 VSISINRQGHICGMIKRGGVGLDPSVILDMIS--VANFVSRQLMDKLDS 225 (237)
Q Consensus 179 l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~--~a~~~~~~l~~~l~~ 225 (237)
.++.+|++|+|+..+ .| ..+++.+.+.++ ++.++.+++++-.++
T Consensus 147 ~tflID~~G~iv~~~-~g--~~~~~~l~~~I~~ll~~~~~~~~~~~~~~ 192 (199)
T PTZ00056 147 GKFLVNKSGNVVAYF-SP--RTEPLELEKKIAELLGVKDYQELFKNYDK 192 (199)
T ss_pred EEEEECCCCcEEEEe-CC--CCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 488999999999654 33 367777777766 445566666665543
No 35
>PRK14623 hypothetical protein; Provisional
Probab=27.88 E-value=2.5e+02 Score=20.69 Aligned_cols=45 Identities=7% Similarity=0.047 Sum_probs=28.4
Q ss_pred cCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHH
Q 026528 174 QMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQ 218 (237)
Q Consensus 174 ~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~ 218 (237)
...+.++|.++.++++..+...-..-=+.+.|+.++-.|...+.+
T Consensus 33 sggG~VkVt~~G~~~i~~i~Idp~~l~D~E~LeDLI~aAvn~A~~ 77 (106)
T PRK14623 33 SSDGLLKVTVTANREIKSISIDDELLEDKEQLEDYLVLTLNKAIE 77 (106)
T ss_pred ECCceEEEEEEcCccEEEEEECHHHcCCHHHHHHHHHHHHHHHHH
Confidence 446789999999999998875422101455666666655554433
No 36
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=27.44 E-value=2.9e+02 Score=24.66 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=39.4
Q ss_pred CchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEEcCeEEEEEEEEE----EEEc--CCCCHHHHHHHHHHHHHhcCCCc
Q 026528 46 GEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDG----LVIS--SDGNLLDALGAAIKAALSNTGIP 119 (237)
Q Consensus 46 ~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~~g~~~w~l~idv----~VL~--~dGnl~da~~~A~~~AL~~~~iP 119 (237)
.+.+.-.|.+.|++-| +|-.++ .|+.| +|+|.+ ++++ .-|+--+.|-.|..++-+..+||
T Consensus 302 i~~Yag~ik~~Iq~rf----------l~~~sf---~gK~C-~l~ikL~pdGtl~~~~~~~Gd~~lCqAalsAvAk~~kiP 367 (387)
T COG3064 302 IDQYAGQIKSAIQSRF----------LDADSF---AGKTC-RLRIKLAPDGTLLDIKPEGGDPALCQAALSAVAKTAKIP 367 (387)
T ss_pred HHHHHHHHHHHHHHHH----------hccccc---CCcee-EEEEEEcCCcceeeccccCCChHHHHHHHHHHHHhccCC
Confidence 3455556666665544 444444 46655 666654 4555 34667788888888999999999
Q ss_pred e
Q 026528 120 S 120 (237)
Q Consensus 120 ~ 120 (237)
.
T Consensus 368 ~ 368 (387)
T COG3064 368 K 368 (387)
T ss_pred C
Confidence 6
No 37
>PRK14628 hypothetical protein; Provisional
Probab=26.53 E-value=2.8e+02 Score=20.83 Aligned_cols=45 Identities=11% Similarity=-0.045 Sum_probs=29.5
Q ss_pred cCCCeEEEEEcCCCcEEEEEecCCccc-CHHHHHHHHHHHHHHHHHH
Q 026528 174 QMSSAVSISINRQGHICGMIKRGGVGL-DPSVILDMISVANFVSRQL 219 (237)
Q Consensus 174 ~~~~~l~i~~~~~g~i~~i~~~G~~~i-~~~~l~~~i~~a~~~~~~l 219 (237)
...+.++|.++.++++..+.-.-. -+ +.+.|+.++-.|..-+.+-
T Consensus 51 sggG~VkV~~nG~~ei~~I~Idp~-~l~D~E~LeDLIiaA~NdA~~k 96 (118)
T PRK14628 51 VGGGAVRIVATCDRRVKDIEIDED-LKEDFETLKDLLIAGMNEVMEK 96 (118)
T ss_pred ecCceEEEEEEcCceEEEEEECHH-HcCCHHHHHHHHHHHHHHHHHH
Confidence 446789999999999998875432 12 5666666666655554443
No 38
>PRK14621 hypothetical protein; Provisional
Probab=25.70 E-value=2.8e+02 Score=20.57 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=28.6
Q ss_pred cCCCeEEEEEcCCCcEEEEEecCCccc-CHHHHHHHHHHHHHHHHH
Q 026528 174 QMSSAVSISINRQGHICGMIKRGGVGL-DPSVILDMISVANFVSRQ 218 (237)
Q Consensus 174 ~~~~~l~i~~~~~g~i~~i~~~G~~~i-~~~~l~~~i~~a~~~~~~ 218 (237)
...+.++|.++.++++..+...-. -+ +.+.|+.++-.|...|.+
T Consensus 36 sGgG~VkV~~~G~~~i~~i~Idp~-lldD~e~LeDLI~aA~NdA~~ 80 (111)
T PRK14621 36 AGGGMVKASVNGKQKLLSLAIDPE-IMDDVEMVQDLVVAAVNSALE 80 (111)
T ss_pred ECCceEEEEEEcCceEEEEEECHH-HcCCHHHHHHHHHHHHHHHHH
Confidence 446789999999999999875432 12 455666666555544433
No 39
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=23.99 E-value=2e+02 Score=19.40 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHH
Q 026528 175 MSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSR 217 (237)
Q Consensus 175 ~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~ 217 (237)
....+.|.++++|+|..+...... ....+.+.+..|.+++.
T Consensus 26 ~~~~V~i~i~~dG~v~~~~i~~sS--G~~~~D~av~~ai~~~~ 66 (85)
T PF13103_consen 26 LSVTVRITIDPDGRVISVRIVKSS--GNPAFDAAVRRAIRRAS 66 (85)
T ss_dssp --EEEEEEE-TTSBEEEEEEEE----S-HHHHHHHHHHHHHH-
T ss_pred cEEEEEEEECCCCCEEEEEEecCC--CCHHHHHHHHHHHHHcC
Confidence 345677888999999654332211 13456666666666543
No 40
>PRK14626 hypothetical protein; Provisional
Probab=23.97 E-value=3e+02 Score=20.33 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=29.2
Q ss_pred hcCCCeEEEEEcCCCcEEEEEecCCcccC---HHHHHHHHHHHHHHHHH
Q 026528 173 SQMSSAVSISINRQGHICGMIKRGGVGLD---PSVILDMISVANFVSRQ 218 (237)
Q Consensus 173 ~~~~~~l~i~~~~~g~i~~i~~~G~~~i~---~~~l~~~i~~a~~~~~~ 218 (237)
+...+.+.|.++.+++|..+...-. -++ .+.|+.++-.|...+.+
T Consensus 36 ~sggG~VkV~~nG~~ev~~i~Id~~-ll~~ed~e~LeDLI~aA~N~A~~ 83 (110)
T PRK14626 36 EVGGGMVKVVSNGLGEIKDVEIDKS-LLNEDEYEVLKDLLIAAFNEASR 83 (110)
T ss_pred EecCcEEEEEEECCccEEEEEECHH-HcCcccHHHHHHHHHHHHHHHHH
Confidence 3446789999999999999876542 232 45566665555544443
No 41
>PRK14629 hypothetical protein; Provisional
Probab=20.64 E-value=2.8e+02 Score=20.16 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=29.4
Q ss_pred hcCCCeEEEEEcCCCcEEEEEecCCccc---CHHHHHHHHHHHHHHHH
Q 026528 173 SQMSSAVSISINRQGHICGMIKRGGVGL---DPSVILDMISVANFVSR 217 (237)
Q Consensus 173 ~~~~~~l~i~~~~~g~i~~i~~~G~~~i---~~~~l~~~i~~a~~~~~ 217 (237)
....+.++|.++.++++..+.-.-. -+ +++.|+.++-.|...+.
T Consensus 34 ~aggGlVkV~~nG~~~v~~i~Idp~-lld~eD~e~LeDLI~aAvNdA~ 80 (99)
T PRK14629 34 RAGSDVVVVEMNGEFNVKKVSIKEE-FFDDLDNEALEHMIKSAFNDAV 80 (99)
T ss_pred EecCCEEEEEEEcCccEEEEEECHH-HcCcccHHHHHHHHHHHHHHHH
Confidence 4456788999999999999876532 23 35666666666555443
No 42
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=20.16 E-value=2.9e+02 Score=18.73 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=24.1
Q ss_pred hHHHhcCCCeEEEEEcCCCcEEEEEecCCc
Q 026528 169 LEEESQMSSAVSISINRQGHICGMIKRGGV 198 (237)
Q Consensus 169 ~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~ 198 (237)
..|+.-....+-|=++.+|+|+++...+..
T Consensus 22 ~~dt~e~~edi~Idide~GkV~GiEi~~As 51 (69)
T COG5428 22 VEDTIELGEDILIDIDENGKVIGIEIWNAS 51 (69)
T ss_pred eeehhhcCCcEEEEecCCCcEEEEEEEchh
Confidence 556666677788889999999999988753
No 43
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=20.10 E-value=1.2e+02 Score=17.35 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=24.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 200 LDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 200 i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
++.+....+-++|.+......++++.++.+.
T Consensus 6 l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~ 36 (39)
T PF01402_consen 6 LPDELYERLDELAKELGRSRSELIREAIREY 36 (39)
T ss_dssp EEHHHHHHHHHHHHHHTSSHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6678888888888888888888888887653
Done!