Query 026528
Match_columns 237
No_of_seqs 133 out of 1094
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2po1_B Probable exosome comple 100.0 3.2E-46 1.1E-50 322.2 27.8 219 1-230 57-275 (277)
2 2nn6_E Exosome complex exonucl 100.0 2.3E-47 7.8E-52 333.5 18.3 227 1-232 67-293 (305)
3 2wp8_A Exosome complex compone 100.0 1.6E-45 5.4E-50 321.9 21.3 222 1-232 51-288 (305)
4 2wnr_A Probable exosome comple 100.0 2.3E-44 8E-49 309.7 27.0 216 1-228 55-270 (271)
5 2je6_A RRP42, exosome complex 100.0 2.6E-44 8.8E-49 310.3 27.3 217 1-228 60-276 (277)
6 3m7n_G Probable exosome comple 100.0 8.1E-45 2.8E-49 310.6 23.6 206 1-225 53-258 (259)
7 2nn6_C Exosome complex exonucl 100.0 2.5E-45 8.5E-50 316.8 18.8 221 1-231 55-276 (278)
8 2nn6_A Polymyositis/scleroderm 100.0 8.2E-45 2.8E-49 322.6 22.1 222 1-232 67-291 (358)
9 2wnr_B Probable exosome comple 100.0 3E-37 1E-41 260.9 24.9 188 1-230 47-237 (240)
10 2nn6_B Exosome complex exonucl 100.0 1.3E-36 4.4E-41 258.4 24.1 189 1-231 47-240 (249)
11 2po1_A Probable exosome comple 100.0 2E-36 6.8E-41 257.2 23.7 189 1-231 47-238 (249)
12 3b4t_A Ribonuclease PH; RNAse, 100.0 2.1E-36 7.3E-41 258.8 23.5 204 1-232 37-247 (262)
13 1r6l_A Ribonuclease PH; beta-a 100.0 3.1E-36 1.1E-40 254.6 24.1 199 1-228 33-238 (239)
14 3dd6_A Ribonuclease PH; exorib 100.0 2E-36 7E-41 257.7 21.8 203 1-232 42-252 (255)
15 1udn_A Ribonuclease PH, RNAse 100.0 2.7E-36 9.3E-41 257.2 20.4 200 1-229 32-238 (255)
16 2je6_B RRP41, exosome complex 100.0 3.1E-35 1.1E-39 250.0 25.3 191 1-233 51-244 (250)
17 1oys_A Ribonuclease PH; transf 100.0 3.7E-36 1.3E-40 255.0 17.3 201 1-230 32-240 (245)
18 3m7n_D Probable exosome comple 100.0 6.4E-35 2.2E-39 248.8 22.7 188 1-230 47-240 (258)
19 2wp8_B Exosome complex compone 100.0 4.3E-35 1.5E-39 248.6 21.2 189 1-232 44-237 (246)
20 2nn6_D Exosome complex exonucl 100.0 8.5E-34 2.9E-38 239.4 19.9 180 1-230 51-233 (237)
21 2nn6_F MTR3, exosome component 100.0 4.1E-33 1.4E-37 239.7 19.0 188 1-230 57-262 (272)
22 3hkm_A OS03G0854200 protein; R 100.0 1.4E-31 4.8E-36 226.7 15.7 182 1-231 35-234 (246)
23 3cdi_A Polynucleotide phosphor 100.0 1.2E-27 4E-32 228.1 17.9 191 1-232 351-552 (723)
24 3krn_A Protein C14A4.5, confir 100.0 4.4E-30 1.5E-34 214.6 0.1 178 1-230 26-208 (222)
25 3u1k_A Polyribonucleotide nucl 99.9 1.1E-26 3.6E-31 218.6 21.3 189 1-232 349-559 (630)
26 1e3p_A Guanosine pentaphosphat 99.9 5.4E-26 1.9E-30 217.4 22.1 189 1-230 386-589 (757)
27 3gme_A Polyribonucleotide nucl 99.9 1.4E-25 4.7E-30 207.4 20.8 190 1-231 345-545 (549)
28 4aid_A Polyribonucleotide nucl 99.9 5.7E-25 2E-29 208.9 18.7 191 1-232 361-562 (726)
29 3u1k_A Polyribonucleotide nucl 99.9 1.1E-22 3.9E-27 191.3 21.3 185 1-231 36-228 (630)
30 3cdi_A Polynucleotide phosphor 99.9 1.6E-21 5.6E-26 185.9 17.6 183 1-231 41-233 (723)
31 4aid_A Polyribonucleotide nucl 99.8 3.5E-19 1.2E-23 169.3 21.0 182 1-231 49-241 (726)
32 3gme_A Polyribonucleotide nucl 99.8 1.4E-18 4.9E-23 160.6 18.4 182 1-231 35-227 (549)
33 1e3p_A Guanosine pentaphosphat 99.7 4.4E-16 1.5E-20 149.1 23.5 183 2-231 60-268 (757)
34 1j8b_A YBAB; hypothetical prot 38.1 1.1E+02 0.0036 21.7 6.6 47 173-219 39-86 (112)
35 1ybx_A Conserved hypothetical 37.0 1.3E+02 0.0043 22.5 6.9 46 174-219 73-120 (143)
36 3f42_A Protein HP0035; helicob 35.9 1.1E+02 0.0037 21.2 6.4 46 173-218 34-79 (99)
37 2k9i_A Plasmid PRN1, complete 25.3 54 0.0018 19.3 2.7 32 199-230 15-46 (55)
38 2kel_A SVTR protein, uncharact 22.3 32 0.0011 21.3 1.1 32 199-230 19-50 (56)
No 1
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=3.2e-46 Score=322.18 Aligned_cols=219 Identities=29% Similarity=0.462 Sum_probs=203.7
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~ 80 (237)
+|+|+|+|+|++++.+|..++|++|++.++++++|+++|.|+.+++++.+++++++|+++|+++++ +|+++|||.
T Consensus 57 ~G~T~Vl~~V~~~~~~p~~~~~~~g~l~~~~~~~p~a~~~~~~g~~~~~~~~l~~li~r~l~~s~~-----idl~~L~i~ 131 (277)
T 2po1_B 57 LGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKA-----LNLEKMVIV 131 (277)
T ss_dssp ETTEEEEEEEEEEEECCCTTCTTSCEEEEEEEECGGGCTTCCSSSCCHHHHHHHHHHHHHHHTTTS-----BCGGGGEEE
T ss_pred ECCeEEEEEEEecccCCCCCCCCceEEEEEEEeCCCccccccCCCCChHHHHHHHHHHHHHhhccc-----ccHHHcccc
Confidence 599999999999998898889999999999999999999988778889999999999999999876 999999999
Q ss_pred cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEeC
Q 026528 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG 160 (237)
Q Consensus 81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~~ 160 (237)
||+++|.|+||++||++|||++||+++|+++||+|+++|.+.+.+++ ...+ +..+..++.++++|+++|||+++
T Consensus 132 pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~da~~p~~~~~~~~----~~~~--~~~~~~~ipl~~~~~avs~g~~~ 205 (277)
T 2po1_B 132 PGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEET----GEVE--TLDETEPLPVEKIPVPVTFAKIG 205 (277)
T ss_dssp TTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTTT----CCEE--EEEEEEECCBCCCCEEEEEEEET
T ss_pred CCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCcEEEeCCC----ceee--cccccccccccCceEEEEEEEEC
Confidence 99999999999999999999999999999999999999999997643 1223 23556778889999999999999
Q ss_pred cEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 161 KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 161 ~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
+.+++|||.+||..+++.++|+++++|+|+.+++.|+++++.++|.+|+++|.+++++++++++++|++.
T Consensus 206 ~~~l~Dp~~~Ee~~~~~~~~v~~~~~g~i~~lq~~g~~~~~~~~l~~~l~~A~~~~~~l~~~~~~~l~~~ 275 (277)
T 2po1_B 206 NILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRKLILEAVEKA 275 (277)
T ss_dssp TEEEESCCHHHHHHCSEEEEEEECTTSCEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCHHHHhhCCCcEEEEEcCCCCEEEEEccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999998889999999999999999999999999999874
No 2
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.3e-47 Score=333.51 Aligned_cols=227 Identities=36% Similarity=0.634 Sum_probs=210.2
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~ 80 (237)
+|+|+|+|+|++++..|..++|++|++.++|+++|++++.|++|++++.+++++++|++.|+++++ ||+++||++
T Consensus 67 ~G~T~Vl~~V~~e~~~p~~~~~~~g~l~~~v~~~p~a~~~~~~r~~~~~~~~isrli~r~lr~s~~-----idl~~L~i~ 141 (305)
T 2nn6_E 67 LGHTDILVGVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSS-----VDLKTLCIS 141 (305)
T ss_dssp ETTEEEEEECCCCCSCCCSSSCSSCCEEEECCCCTTTCSSCCTTSTHHHHHHHHHHHHHHHHHSCC-----SCSSSSCSS
T ss_pred ECCeEEEEEEEEEeeCCCcCCCCceEEEEEEEeCCCcCccccCCCCchHHHHHHHHHHHHHhhcCc-----ccHHHheec
Confidence 599999999999999898889999999999999999999998888889999999999999999877 999999999
Q ss_pred cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEeC
Q 026528 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG 160 (237)
Q Consensus 81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~~ 160 (237)
|++++|.|+||++||++|||++||+++|+++||+++++|++.+..++.+..++.+..++.+..+|.++++|+++|||+++
T Consensus 142 p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~a~iP~~~~~~~~~~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~ 221 (305)
T 2nn6_E 142 PREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVTLCKIG 221 (305)
T ss_dssp TTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC------EEEEESSCCCSCCCCTTCCCCEEEEESS
T ss_pred cCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEEecCCCCceeeeccCcccccccccccCceEEEEEEEEC
Confidence 99999999999999999999999999999999999999999887644334456677788889999999999999999999
Q ss_pred cEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 026528 161 KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA 232 (237)
Q Consensus 161 ~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~~ 232 (237)
+.+|+|||.+||..+++.++|+++++|+|+.+++.|+.+++.++|.+|+++|.++++++.+++++++++.++
T Consensus 222 ~~~l~Dpt~~Ee~~~~~~l~Va~~~~g~i~~i~~~g~~~l~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 293 (305)
T 2nn6_E 222 YRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEES 293 (305)
T ss_dssp SSEESSCCHHHHTSCSEEEEECCCSSSCCCEEEEEESSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCHHHHhhcCCcEEEEEcCCCCEEEEEccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888999999999999999999999999999998765
No 3
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-45 Score=321.92 Aligned_cols=222 Identities=23% Similarity=0.380 Sum_probs=184.0
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCc-hhHHHHHHHHHHHHhcCCCCCCCCCCCCceeE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGE-ELSAELSSALQHCLLGGKSGAGAGIDLSSLVV 79 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~-~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I 79 (237)
+|+|+|+|+|++++..|..++|++|.+.++|+++|++++.|+.++++ +.+++++++|++.|+++.+ ||+++|||
T Consensus 51 ~G~T~Vl~~V~~~~~~p~~~~~~~g~~~~~ve~~~~~~~~~~~g~~~~~~~~~is~li~r~l~~s~~-----idl~~L~i 125 (305)
T 2wp8_A 51 MGNTKVHCRISCQIAQPYEDRPFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGA-----LDVEGLCI 125 (305)
T ss_dssp ETTEEEEEEEEEEEC-CCSSCTTCCEEEEEECCC----------------------CHHHHHHHTTS-----BCGGGGEE
T ss_pred ECCeEEEEEEeccccCCcccCCCCcEEEEEEEECCCCCccccCCCCChhHHHHHHHHHHHHHhhccC-----cCHHHccc
Confidence 59999999999999999888999999999999999999988755566 8999999999999998766 99999999
Q ss_pred EcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEe-cCCccccccccCCCceEEEEEE
Q 026528 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVD-ISDEEFLQFDTSGVPVITTLTK 158 (237)
Q Consensus 80 ~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~Pi~vT~~~ 158 (237)
+||+++|.|+||++||++|||++||+++|+++||+++++|.+.+..+ ++.+. .+++++.+|.++++|+++|||+
T Consensus 126 ~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~~a~iP~~~~~~~-----~~~i~~~~~~~~~~l~~~~~pvavs~g~ 200 (305)
T 2wp8_A 126 VAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE-----QIIVHPVNEREPVPLGILHIPICVTFSF 200 (305)
T ss_dssp ETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTS-----SCCBCCSSSSCCEECCBSCCCEEEEEEE
T ss_pred cCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHhCCCeEEecCC-----ceEecccccccccccccccCeEEEEEEE
Confidence 99999999999999999999999999999999999999999887643 23333 3556778899999999999999
Q ss_pred eC--------------cEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 159 VG--------------KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLD 224 (237)
Q Consensus 159 ~~--------------~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~ 224 (237)
++ +.+|+|||.+||.++++.++|+++++|++|.+++.|+.+++.+.|.+|+++|.+++++|+++++
T Consensus 201 i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~Va~~~~g~i~~l~~~g~~~~~~~~l~~~l~~A~~~~~~i~~~~~ 280 (305)
T 2wp8_A 201 FNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQIL 280 (305)
T ss_dssp CC---------------CEEESCCHHHHHHCSEEEEEEECTTSEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EccccccccccccccCCeEEeCCCHHHHhccCCcEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 7899999999999999999999999999999999997789999999999999999999999999
Q ss_pred HHHHhccc
Q 026528 225 SEIAAADA 232 (237)
Q Consensus 225 ~~l~~~~~ 232 (237)
+++++...
T Consensus 281 ~~l~~~~~ 288 (305)
T 2wp8_A 281 QLLKEDSE 288 (305)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 4
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.3e-44 Score=309.66 Aligned_cols=216 Identities=32% Similarity=0.538 Sum_probs=199.7
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~ 80 (237)
+|+|+|+|+|+++..+|..+.|++|.+.++++++|++++.|+.+++++.+++++++|++.|+++++ +|+++|||.
T Consensus 55 ~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~s~li~r~lr~s~~-----i~l~~l~i~ 129 (271)
T 2wnr_A 55 LGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRM-----IDLEKLCII 129 (271)
T ss_dssp ETTEEEEEEEEEEEECCCTTCTTCCEEEEEEEECGGGCTTCCCSSCCHHHHHHHHHHHHHHHHTTC-----BCGGGGEEE
T ss_pred ECCeEEEEEEEeeeecCCCCCCCceEEEEEEEeCCcccccccCCCCchHHHHHHHHHHHHHhccCC-----ccHHHcccc
Confidence 599999999999998888888999999999999999999888778889999999999999999866 999999999
Q ss_pred cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEeC
Q 026528 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG 160 (237)
Q Consensus 81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~~ 160 (237)
||+++|.|+||++||++|||++||+++|+++||+++++|.+.+.++ ...+ +..+..++.++++|.++|||+++
T Consensus 130 pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~~~~-----~~~~--~~~~~~~ip~~~~~~avt~g~~~ 202 (271)
T 2wnr_A 130 EGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDG-----EVVI--NREKMQPLPVNRKALMCTFAKIG 202 (271)
T ss_dssp TTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEETT-----EEEE--EEEEEEECCBCCCEEEEEEEEET
T ss_pred CCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCC-----ceee--ccCcccccCccCCeEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999642 1222 34566778889999999999999
Q ss_pred cEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 161 KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228 (237)
Q Consensus 161 ~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~ 228 (237)
+.+++|||.+||..+++.++|+++++|+|+.+++.|+++++.++|.+|+++|.+++++++++++++++
T Consensus 203 ~~~l~Dpt~~Ee~~~~~~l~va~~~~~~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 203 NEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVSIAVEKVPQLIEYLDKSMT 270 (271)
T ss_dssp TEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEEESSSCBCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CEEEeCCCHHHHhcCCCcEEEEEeCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999877899999999999999999999999998864
No 5
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=2.6e-44 Score=310.30 Aligned_cols=217 Identities=29% Similarity=0.398 Sum_probs=199.0
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~ 80 (237)
+|+|+|+|+|+++..+|..++|++|.+.++++++|++++.|+.+++++.+++++++|++.|+++++ +|+++|||.
T Consensus 60 ~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~is~li~r~lr~~~~-----i~~~~l~i~ 134 (277)
T 2je6_A 60 LGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKA-----LDLTKLVIE 134 (277)
T ss_dssp ETTEEEEEEEEEEEECCCTTCTTCCEEEEEEEECTTSCTTCCCSSCCHHHHHHHHHHHHHHHHTTC-----SCGGGGEEE
T ss_pred ECCeEEEEEEEeeeeCCCCCCCCccEEEEEEEeCCccCcccccCCCChHHHHHHHHHHHHHhccCC-----cCHHHceee
Confidence 599999999999998888888999999999999999999887777889999999999999999876 999999999
Q ss_pred cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEeC
Q 026528 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG 160 (237)
Q Consensus 81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~~ 160 (237)
||+++|.|+||++||++|||++||+++|+.+||+++++|.+.+..+ ++.+ .+..+..++.++++|.++|||+++
T Consensus 135 ~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~v~~~~~-----~~~~-~~~~~~~~ip~~~~~~avsvg~~~ 208 (277)
T 2je6_A 135 PGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSN-----GISV-NKNEVVGKLPLNYPVVTISVAKVD 208 (277)
T ss_dssp TTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC--------CEE-EEEEEEEECCCSCCCEEEEEEEET
T ss_pred cCceEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCC-----cceE-eccCccccccccCCeEEEEEEEEC
Confidence 9999999999999999999999999999999999999999988752 1222 123456778889999999999999
Q ss_pred cEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 161 KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228 (237)
Q Consensus 161 ~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~ 228 (237)
+.+++|||.+||+.+++.++|+++++|+|+.+++.|+++++.++|.+|+++|.+++++++++++++++
T Consensus 209 ~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~v~~~g~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 209 KYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLG 276 (277)
T ss_dssp TEEEESCCHHHHHHCSEEEEEEECTTCCEEEEEEESSSCEEHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEecCCCHHHHhcCCCcEEEEEeCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998999999999878899999999999999999999999999874
No 6
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=8.1e-45 Score=310.60 Aligned_cols=206 Identities=32% Similarity=0.499 Sum_probs=192.5
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~ 80 (237)
+|+|+|+|+|++++.+|..++|++|++.++++++|++++.|+.+++++.+++++++|++.|+++++ +|+++|||.
T Consensus 53 ~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~srli~r~lr~s~~-----i~l~~L~i~ 127 (259)
T 3m7n_G 53 LGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEA-----VDLSKLVIE 127 (259)
T ss_dssp ETTEEEEEEEEEEEECCCSSCTTSCEEEEEEECCTTSCTTCCSSSSCHHHHHHHHHHHHHHHHTTC-----BCGGGGEEE
T ss_pred ECCcEEEEEEEecccCCCCCCCCceEEEEEEEeCCcccccccCCCCChHHHHHHHHHHHHHhhcCC-----ccHHHhccc
Confidence 599999999999999888889999999999999999999998777889999999999999999876 999999999
Q ss_pred cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEeC
Q 026528 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG 160 (237)
Q Consensus 81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~~ 160 (237)
||+++|.|+||++||++|||++||+++|+++||+++++|++.+.. .+..++.++++|.++|||+++
T Consensus 128 pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~~~--------------~~~~~lp~~~~~~avtvg~~~ 193 (259)
T 3m7n_G 128 EGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDL--------------GEDYLLPVRDLPVSVTSLIVG 193 (259)
T ss_dssp TTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTS--------------SSCEECCBCCCCEEEEEEEET
T ss_pred CCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEecC--------------CceecccccCceeEEEEEEEC
Confidence 999999999999999999999999999999999999999875542 234678889999999999999
Q ss_pred cEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 161 KHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDS 225 (237)
Q Consensus 161 ~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~ 225 (237)
+.+++|||.+||+.+++.++|+++++|+++.+++.|+++++.++|.+|+++|.++++++++++++
T Consensus 194 ~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~l~~~~~~ 258 (259)
T 3m7n_G 194 NKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLREKFKE 258 (259)
T ss_dssp TEEEESCCTTGGGGCSCEEEEEECTTSCEEEEEEESSCCBCHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CEEEECCCHHHHhhCCCcEEEEEeCCCcEEEEECCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988999999999999999999999998764
No 7
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.5e-45 Score=316.79 Aligned_cols=221 Identities=30% Similarity=0.443 Sum_probs=204.5
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~ 80 (237)
+|+|+|+|+|++++..|...+|++|.+.++++++|++++.|+.+++++.+++++++|++.|+++.+ ||+++|||.
T Consensus 55 ~G~T~Vl~~V~~~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~~~~~s~li~r~l~~s~~-----i~l~~L~i~ 129 (278)
T 2nn6_C 55 LGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQI-----IQKEDLCIS 129 (278)
T ss_dssp ETTEEEEEEEEEEECCCCSSSTTCCCCEEEEECCSSSCTTSCSSSCCHHHHHHHHHHHHHHHHHCC-----SCHHHHCSS
T ss_pred eCCeEEEEEEEEEeecCCCCCCCccEEEEEEEeCCccCccccCCCCcHHHHHHHHHHHHHHhccCC-----CCHHHCEEe
Confidence 599999999999999888888999999999999999999988777889999999999999997655 999999999
Q ss_pred cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEeC
Q 026528 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKVG 160 (237)
Q Consensus 81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~~ 160 (237)
||+++|.|+||++||++|||++||+++|+++||++++||++.+..++. ....++++..++.++++|+++|||+++
T Consensus 130 pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~v~~~~~~~-----~~~~~~~~~~~lp~~~~~~avs~g~~~ 204 (278)
T 2nn6_C 130 PGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETA-----LAEVNLKKKSYLNIRTHPVATSFAVFD 204 (278)
T ss_dssp BTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHTCCCCCCCBCSSSB-----CCCTTSCCCSCSCCSCCCEEEEEEECT
T ss_pred CCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCc-----ceecCcccccccccCCceEEEEEEEEC
Confidence 999999999999999999999999999999999999999998875431 123566778889999999999999999
Q ss_pred c-EEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026528 161 K-HYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231 (237)
Q Consensus 161 ~-~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~ 231 (237)
+ .+++|||.+||..+++.++|+++++|+|+.+++.|+.+++.++|.+|+++|.++++++++++++++++.+
T Consensus 205 ~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~v~~~g~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~~ 276 (278)
T 2nn6_C 205 DTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 276 (278)
T ss_dssp TTCCEESCCTTTTTSCSEEEEEEECTTCCEEEEEESCCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC
T ss_pred CceEEECCCHHHHhhcCceEEEEEcCCCcEEEEEccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9 9999999999999999999999999999999999977899999999999999999999999999988753
No 8
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=8.2e-45 Score=322.61 Aligned_cols=222 Identities=24% Similarity=0.413 Sum_probs=204.5
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeEE
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVVV 80 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I~ 80 (237)
+|+|+|+|+|++++..|...+|++|++.++|+++|++++.|+.+++++.+++++++|++.|+++.+ +|+++|||+
T Consensus 67 ~G~T~VL~tV~~e~~~p~~~~~~~g~l~~~v~~~p~a~~~~~~g~~s~~e~eisrli~r~Lr~s~~-----idl~~LcI~ 141 (358)
T 2nn6_A 67 LGKTRVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKC-----IDTESLCVV 141 (358)
T ss_dssp SSSCEEEEEECCEEECCCSTTTTSCCEEEEEEECTTTCSSCCSSSTHHHHTHHHHHHHHHHHHHTC-----BCSSSSCSB
T ss_pred ECCcEEEEEEEecccCCcccCCCCcEEEEEEEecCCccccccCCCCCHHHHHHHHHHHHHhhhccc-----cchHhhccc
Confidence 699999999999999998889999999999999999999988777889999999999999999877 999999999
Q ss_pred cCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEe-cCCccccccccCCCceEEEEEEe
Q 026528 81 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVD-ISDEEFLQFDTSGVPVITTLTKV 159 (237)
Q Consensus 81 ~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~Pi~vT~~~~ 159 (237)
||+++|.|+||++||++|||++||+++|+++||+++++|.+.+..+ ++.+. .+++++.+|.++++|+++|||++
T Consensus 142 pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~aAL~da~iP~v~~~~~-----~v~i~~~~~~~~~~l~i~~~p~avsvgl~ 216 (358)
T 2nn6_A 142 AGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD-----EVTLYTPEERDPVPLSIHHMPICVSFAFF 216 (358)
T ss_dssp TTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTT-----CCBCCHHHHTSCCCCCBCCCEEEEEEEEC
T ss_pred CCCccEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhCcCcEEeeCC-----eeEecccccccccccCccCCEEEEEEEEE
Confidence 9999999999999999999999999999999999999999877642 23222 23466788999999999999987
Q ss_pred --CcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 026528 160 --GKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA 232 (237)
Q Consensus 160 --~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~~ 232 (237)
++.+|+|||.+||..+++.++|+++++|+|+.+++.|+.+++.+.|.+|+++|.+++++|.+++++++++...
T Consensus 217 ~~~~~illDPt~~Ee~~~~~~l~Va~t~~g~I~~lqk~G~~~ls~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 291 (358)
T 2nn6_A 217 QQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALENDQK 291 (358)
T ss_dssp TTTSSEEESCCHHHHHHCSCEEEEEEETTTEEEEEEEESCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCEEEECCCHHHHhhcCccEEEEEcCCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8899999999999999999999999999999999999888999999999999999999999999999987654
No 9
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3e-37 Score=260.93 Aligned_cols=188 Identities=19% Similarity=0.219 Sum_probs=172.8
Q ss_pred CCCcEEEEEEEEEee--CCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCcee
Q 026528 1 MGSTDVIASVKAELG--RPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLV 78 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~--~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~ 78 (237)
+|+|+|+|+|+++.. .|....|++|++.++++++|++++.|+.++++..+++++++|+++|++. ++++.|
T Consensus 47 ~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~~~~~~~~~~~~~~l~~ll~r~l~~~-------i~l~~~- 118 (240)
T 2wnr_B 47 FGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPA-------LILEKF- 118 (240)
T ss_dssp ETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSSSCCCSSCCHHHHHHHHHHHHHHGGG-------BCGGGS-
T ss_pred ECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcCCccCCCCChhHHHHHHHHHHHHHHh-------cCHHHC-
Confidence 599999999999553 4456789999999999999999998886778899999999999999986 888887
Q ss_pred EEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEE
Q 026528 79 VVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK 158 (237)
Q Consensus 79 I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~ 158 (237)
|+ |.|+|++.||++|||++||+++|+++||+|+++|+ +++|+++|||+
T Consensus 119 --p~---~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~---------------------------~~~v~avs~g~ 166 (240)
T 2wnr_B 119 --PR---SVIDVFIEVLEAEGGTRCAGITAASVALADAGIPM---------------------------RDMVVACAAGK 166 (240)
T ss_dssp --TT---EEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCB---------------------------SSCCEEEEEEE
T ss_pred --CC---cEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCcc---------------------------ccceeeEEEEE
Confidence 32 89999999999999999999999999999999995 47899999999
Q ss_pred eCcEEEEcCChHHHhcCCCeEEEEE-cCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 159 VGKHYIVDATLEEESQMSSAVSISI-NRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 159 ~~~~~l~Dpt~~EE~~~~~~l~i~~-~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
+++.+++|||.+||..+++.++|++ +.+|+++.+++.|+ ++++.|.+|+++|.++++++++.++++|++.
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~--~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 237 (240)
T 2wnr_B 167 VGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGN--LTPEEFERALDLAVEGCLRIHEVQKEALRKR 237 (240)
T ss_dssp SSSSEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEEEC--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ECCEEEeCCCHHHhccCCceEEEEEECCCCCEEEEEEEcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998 67899999999976 8999999999999999999999999999765
No 10
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.3e-36 Score=258.40 Aligned_cols=189 Identities=17% Similarity=0.156 Sum_probs=173.8
Q ss_pred CCCcEEEEEEEEEeeCCCC---CCCCCceEEEEEeeCCCCCCCcC-CCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCc
Q 026528 1 MGSTDVIASVKAELGRPSA---MQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGIDLSS 76 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~---~~p~~G~i~~~v~~~~~~~~~~~-~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~ 76 (237)
+|+|+|+|+|+++...|.. ..|++|++.++++++|++++.+. .+++++.+++++++|+++|++. ++++.
T Consensus 47 ~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~~~~~~~~~~~~~~~~~~~ll~r~l~~~-------i~~~~ 119 (249)
T 2nn6_B 47 QGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAA-------ILTQL 119 (249)
T ss_dssp ESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTSSSCCCTTTSTHHHHHHHHHHHHHHHHT-------TCGGG
T ss_pred ECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCcccccccCCCCCHhHHHHHHHHHHHHHHh-------cCHHH
Confidence 5999999999999887654 68999999999999999998876 4467899999999999999976 89988
Q ss_pred eeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEE
Q 026528 77 LVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156 (237)
Q Consensus 77 L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~ 156 (237)
|+ .|.|+|++.||++|||++||+++|+++||+|+++|+ +++|.++||
T Consensus 120 ~p------~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl---------------------------~~~v~avs~ 166 (249)
T 2nn6_B 120 HP------RSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPM---------------------------RDFVCACSA 166 (249)
T ss_dssp CT------TEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCC---------------------------SSCCEEEEE
T ss_pred CC------CcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCcc---------------------------cCCeeeEEE
Confidence 83 399999999999999999999999999999999994 479999999
Q ss_pred EEeCcEEEEcCChHHHhcCCCeEEEEEc-CCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026528 157 TKVGKHYIVDATLEEESQMSSAVSISIN-RQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231 (237)
Q Consensus 157 ~~~~~~~l~Dpt~~EE~~~~~~l~i~~~-~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~ 231 (237)
|++++.+++|||.+||..+++.++|+++ ..|+|+.+++.| +++.++|.+|+++|.++++++++.++++|++..
T Consensus 167 g~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g--~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 240 (249)
T 2nn6_B 167 GFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDA--RLHEDHLERVLEAAAQAARDVHTLLDRVVRQHV 240 (249)
T ss_dssp EEETTEEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECS--CCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCeEEECCChHHhccCCcEEEEEEECCCCCEEEEEEEC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996 788999999997 489999999999999999999999999998764
No 11
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=2e-36 Score=257.24 Aligned_cols=189 Identities=19% Similarity=0.206 Sum_probs=173.8
Q ss_pred CCCcEEEEEEEE--EeeCCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCcee
Q 026528 1 MGSTDVIASVKA--ELGRPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLV 78 (237)
Q Consensus 1 lG~T~Vi~~V~~--ei~~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~ 78 (237)
+|+|+|+|+|++ +...|....|++|++.++++++|++++.|+.+++++.+++++++|+++|++. +|++.|
T Consensus 47 ~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~~~~~~~s~li~r~l~~~-------i~l~~~- 118 (249)
T 2po1_A 47 WGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPA-------LILEMF- 118 (249)
T ss_dssp ETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSSSCCCSSCCHHHHHHHHHHHHHHGGG-------BCGGGS-
T ss_pred ECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccccccCCCCCHHHHHHHHHHHHHHHhh-------ccHHHC-
Confidence 599999999999 5444566789999999999999999998876778899999999999999986 888877
Q ss_pred EEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEE
Q 026528 79 VVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK 158 (237)
Q Consensus 79 I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~ 158 (237)
|+ |.|+|+++||++|||++||+++|+++||+++++|+ +++|.++|||+
T Consensus 119 --p~---~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~---------------------------~~~v~avs~g~ 166 (249)
T 2po1_A 119 --PR---TAIDVFIEVLQADAGTRVAGITAASLALADAGIPM---------------------------RDLVAACAAGK 166 (249)
T ss_dssp --TT---EEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCB---------------------------SSCCEEEEEEE
T ss_pred --CC---CEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCc---------------------------cCceEEEEEEE
Confidence 53 99999999999999999999999999999999995 47899999999
Q ss_pred eCcEEEEcCChHHHhcCCCeEEEEE-cCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026528 159 VGKHYIVDATLEEESQMSSAVSISI-NRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231 (237)
Q Consensus 159 ~~~~~l~Dpt~~EE~~~~~~l~i~~-~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~ 231 (237)
+++.+++|||.+||..+++.++|++ +..|+|+.+++.|+ ++.++|.+++++|.++++++++.+++++++..
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g~--~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 238 (249)
T 2po1_A 167 IEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGY--LTKDEFIEAVKLAIKGAKAVYQKQREALKEKY 238 (249)
T ss_dssp ETTEEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEEC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 67899999999984 99999999999999999999999999998764
No 12
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.1e-36 Score=258.82 Aligned_cols=204 Identities=19% Similarity=0.170 Sum_probs=176.5
Q ss_pred CCCcEEEEEEEEEeeCCCCCC-CCCceEEEEEeeCCCCCCCcCC-----CCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQ-PDKGKVAIFVDCSPTAEPTFEG-----RGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~-p~~G~i~~~v~~~~~~~~~~~~-----~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|+++...|...+ |++|++.++++++|++++.|.. +++++.+++++++|++.|++. ||+
T Consensus 37 ~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~Re~~~G~~~~~~~~isrli~r~lr~~-------i~~ 109 (262)
T 3b4t_A 37 FGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRAC-------IDL 109 (262)
T ss_dssp ETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGSSSCCCCHHHHTSCCHHHHHHHHHHHHHHHTT-------BCH
T ss_pred ECCCEEEEEEEecCcCCCccCCCCceEEEEEEEeCCCccccccccccCCCCCCHHHHHHHHHHHHHHHHh-------cCH
Confidence 599999999999999876544 8999999999999999988764 357899999999999999975 999
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
+.| ++ |+|+||++||++|||++||+++|+++||++++.|.+ ..+ .+ . .++.++++|.++
T Consensus 110 ~~l----~~--~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~---~~~----~~------~--~~ip~~~~v~av 168 (262)
T 3b4t_A 110 AAL----GE--NTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLS---AAG----KL------S--DPRPLSCAIAAV 168 (262)
T ss_dssp HHH----CS--EEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH---HTT----CC------S--SSCCBCSCEEEE
T ss_pred hHC----CC--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhc---cCC----cc------c--cCCcccCceeEE
Confidence 998 34 899999999999999999999999999999975431 110 00 0 045568999999
Q ss_pred EEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 026528 155 TLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA 232 (237)
Q Consensus 155 T~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~-~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~~ 232 (237)
|||++++.+|+|||.+||..++..++|+++++|+|+.+++.|+ .+++.++|.+|+++|.++++++++++++++++...
T Consensus 169 svg~~~g~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 247 (262)
T 3b4t_A 169 SVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYP 247 (262)
T ss_dssp EEEEETTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred EEEEECCEEEECCCHHHHhccCceEEEEEcCCCCEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999999999985 68999999999999999999999999999986544
No 13
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=3.1e-36 Score=254.59 Aligned_cols=199 Identities=20% Similarity=0.227 Sum_probs=173.3
Q ss_pred CCCcEEEEEEEEEeeCCCCCC-CCCceEEEEEeeCCCCCCCcCC-----CCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQ-PDKGKVAIFVDCSPTAEPTFEG-----RGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~-p~~G~i~~~v~~~~~~~~~~~~-----~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|+++...|...+ |++|++.+++++.|++++.+.. +++++.+++++++|++.|++. ||+
T Consensus 33 ~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~~G~~~~~~~~isrli~r~l~~~-------i~~ 105 (239)
T 1r6l_A 33 FGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAA-------LDL 105 (239)
T ss_dssp ETTEEEEEEEEEEESCSSCCC---CCEEEEEEEECTTSSSSCCCCHHHHTSCCHHHHHHHHHHHHHHHHT-------BCG
T ss_pred ECCEEEEEEEEccCccCCccCCCCcEEEEEEEEeCCCccccccccccCCCCCcHHHHHHHHHHHHHHHHh-------cCH
Confidence 599999999999998876544 7999999999999999987743 347899999999999999975 999
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
+.| ++ |.++|+++||++|||++||+++|+++||++++.|.. .. .+-.++.++++|.++
T Consensus 106 ~~l----~~--~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~---~~-------------~~~~~ip~~~~~~av 163 (239)
T 1r6l_A 106 SKL----GE--NTLYIDCDVIQADGGTRTASITGATVALIDALAVLK---KR-------------GALKGNPLKQMVAAV 163 (239)
T ss_dssp GGT----CS--EEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH---HT-------------TCCSSCCBCCCEEEE
T ss_pred HHc----CC--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhc---cc-------------CcccccCccCceeEE
Confidence 999 44 788999999999999999999999999999995422 10 011234568999999
Q ss_pred EEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 155 TLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRG-GVGLDPSVILDMISVANFVSRQLMDKLDSEIA 228 (237)
Q Consensus 155 T~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G-~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~ 228 (237)
|||++++.+++|||.+||+.+++.++|+++++|+++.+++.| +.+++.++|.+|+++|.+++++++++++++++
T Consensus 164 s~g~~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 238 (239)
T 1r6l_A 164 SVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238 (239)
T ss_dssp EEEEETTEEEESCCHHHHHHCSEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCEEEECCCHHHHhcCCceEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987 46899999999999999999999999999885
No 14
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=2e-36 Score=257.74 Aligned_cols=203 Identities=19% Similarity=0.192 Sum_probs=180.7
Q ss_pred CCCcEEEEEEEEEeeCC-CCCCCCCceEEEEEeeCCCCCCCcCC-----CCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRP-SAMQPDKGKVAIFVDCSPTAEPTFEG-----RGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p-~~~~p~~G~i~~~v~~~~~~~~~~~~-----~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|+++...| ...+|++|++.++++++|++++.|.. +++++.+++++++|++.|++. ||+
T Consensus 42 ~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~P~a~~~~~~Re~~~g~~~~~~~eisrli~r~lr~~-------i~~ 114 (255)
T 3dd6_A 42 VGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRESSKGKVTGRTMEIQRLIGRALRAV-------VDL 114 (255)
T ss_dssp ETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSSCCCCCCC-CCCCHHHHHHHHHHHHHHHHH-------BCH
T ss_pred ECCeEEEEEEEecCCCCCCCCCCCceEEEEEEEECCCcccccccccccCCCCCHHHHHHHHHHHHHHHHh-------cCh
Confidence 59999999999998765 45689999999999999999998753 457899999999999999985 999
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
+.| ++ |.|+||++||++|||++||+++|+++||+++++|.+. . .+..++.++++|.++
T Consensus 115 ~~l----~~--~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~--~--------------g~~~~iPl~~~v~av 172 (255)
T 3dd6_A 115 EAL----GE--RTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQ--A--------------EKVSKIPVKDYLAAT 172 (255)
T ss_dssp HHH----CS--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHH--T--------------TSSSSCCBSSCEEEE
T ss_pred hhc----CC--eEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhh--c--------------CcccCCCccCceeEE
Confidence 988 34 9999999999999999999999999999999999631 1 011235568999999
Q ss_pred EEEEeCcEEE-EcCChHHHhcCCCeEEEEEcCCCcEEEEEecC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 026528 155 TLTKVGKHYI-VDATLEEESQMSSAVSISINRQGHICGMIKRG-GVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA 232 (237)
Q Consensus 155 T~~~~~~~~l-~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G-~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~~ 232 (237)
|+|++++.++ +|||.+||..++..++|+++++|+|+.+++.| +.+++.++|.+|+++|.++++++++++++++++...
T Consensus 173 svg~i~g~~vllDpt~~Ee~~~~~~l~Va~~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 252 (255)
T 3dd6_A 173 SVGIVEEQGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEALGDIVS 252 (255)
T ss_dssp EEEEETTTEEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred EEEEECCEEEEeCCCHHHHhhcCceEEEEEcCCCcEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888 99999999999999999999999999999998 678999999999999999999999999999987643
No 15
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=2.7e-36 Score=257.21 Aligned_cols=200 Identities=15% Similarity=0.174 Sum_probs=177.1
Q ss_pred CCCcEEEEEEEEEeeCCCC-CCCCCceEEEEEeeCCCCCCCcCC-----CCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSA-MQPDKGKVAIFVDCSPTAEPTFEG-----RGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~-~~p~~G~i~~~v~~~~~~~~~~~~-----~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|+++...|.. ..|++|++.++++++|++++.+.. +++++.+++++++|++.|++. ||+
T Consensus 32 ~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~~G~~~~~~~eisrli~r~lr~~-------i~~ 104 (255)
T 1udn_A 32 FGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTA-------VEL 104 (255)
T ss_dssp ETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECSCCTTSCCCCSSTTCSCCHHHHHHHHHHHHHHHHH-------BCG
T ss_pred ECCEEEEEEEEcCCcCCCCCCCCCceEEEEEEEcCCCccccccccccCCCCCCHHHHHHHHHHHHHHHHh-------cCH
Confidence 5999999999999988743 458999999999999999987732 357899999999999999975 999
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
+.| ++ |.|+|+++||++|||++||+++|+++||+|++.|.+ . +.+..++.++++|.++
T Consensus 105 ~~l----~~--~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~---~-------------~~~~~~ipl~~~v~av 162 (255)
T 1udn_A 105 TKI----GE--RTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLH---K-------------EGIIEETPIKDFVAAV 162 (255)
T ss_dssp GGG----CS--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH---H-------------TTSSSSCCBCCCEEEE
T ss_pred HHc----CC--eEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhc---c-------------cCcccCCCccCceeEE
Confidence 999 44 899999999999999999999999999999996532 1 0112345668999999
Q ss_pred EEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026528 155 TLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229 (237)
Q Consensus 155 T~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~-~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~ 229 (237)
|||++++.+|+|||.+||..+++.++|+++++|+++.+++.|+ .+++.++|.+|+++|.++++++++++++++++
T Consensus 163 svg~~~g~~llDpt~~Ee~~~~~~l~va~~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 163 SVGIVNDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYVI 238 (255)
T ss_dssp EEEEETTEEEESCCHHHHHTCSEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEEECCEEEECCCHHHHhhCCCCEEEEEeCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999874 68999999999999999999999999999876
No 16
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=3.1e-35 Score=250.04 Aligned_cols=191 Identities=15% Similarity=0.135 Sum_probs=173.2
Q ss_pred CCCcEEEEEEEEEee--CCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCcee
Q 026528 1 MGSTDVIASVKAELG--RPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLV 78 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~--~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~ 78 (237)
+|+|+|+|+|+++.. .|....|++|.+.++++++|++++.|+.+++++.+++++++|++.|++. ++++.+
T Consensus 51 ~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~g~~~~~e~~~s~li~r~l~~~-------i~~~~~- 122 (250)
T 2je6_B 51 MGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESA-------VLVELF- 122 (250)
T ss_dssp ETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSCCCSSCCHHHHHHHHHHHHHHHTT-------BCGGGS-
T ss_pred ECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCCccCCCCChhHHHHHHHHHHHHHhh-------cCHhhC-
Confidence 599999999998654 3355689999999999999999998876678899999999999999987 888776
Q ss_pred EEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEE
Q 026528 79 VVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK 158 (237)
Q Consensus 79 I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~ 158 (237)
| .|.|+|+++||++|||++||+++|+++||+++++|+ +++|.++|+|+
T Consensus 123 --p---~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP~---------------------------~~~v~avsvg~ 170 (250)
T 2je6_B 123 --P---RTAIDVFTEILQADAGSRLVSLMAASLALADAGIPM---------------------------RDLIAGVAVGK 170 (250)
T ss_dssp --T---TEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCB---------------------------SSCCEEEEEEE
T ss_pred --C---CcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCc---------------------------cCceEEEEEEE
Confidence 3 399999999999999999999999999999999995 47899999999
Q ss_pred eCcEEEEcCChHHHhcCCCeEEEEE-cCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 026528 159 VGKHYIVDATLEEESQMSSAVSISI-NRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADAD 233 (237)
Q Consensus 159 ~~~~~l~Dpt~~EE~~~~~~l~i~~-~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~~~ 233 (237)
+++.+++|||.+||..+++.++|++ +..++|+.+++.|+ ++.++|.++++.|.++++++++++++++++...+
T Consensus 171 ~~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g~--~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 244 (250)
T 2je6_B 171 ADGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNGS--MTPDEFRQAFDLAVKGINIIYNLEREALKSKYVE 244 (250)
T ss_dssp ETTEEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEEC--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-
T ss_pred ECCEEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999 56889999999974 8999999999999999999999999999887543
No 17
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=3.7e-36 Score=254.99 Aligned_cols=201 Identities=17% Similarity=0.168 Sum_probs=165.1
Q ss_pred CCCcEEEEEEEEEeeCCC-CCCCCCceEEEEEeeCCCCCCCcCC-----CCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPS-AMQPDKGKVAIFVDCSPTAEPTFEG-----RGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~-~~~p~~G~i~~~v~~~~~~~~~~~~-----~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|+++...|. ...|++|++.++++++|++++.+.. +++++.+++++++|+++|++. ||+
T Consensus 32 ~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~~G~~~~~~~eis~li~r~l~~~-------i~~ 104 (245)
T 1oys_A 32 AGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSKGKISGRTMEIQRLIGRALRAV-------VDL 104 (245)
T ss_dssp ETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC-------------------CHHHHHHHHHHHHHHHT-------BCH
T ss_pred ECCeEEEEEEEeccccCCccCCCCceEEEEEEEeCCCcCcccccccccCCCCchHHHHHHHHHHHHHHHh-------cCH
Confidence 599999999999998875 3568999999999999999987643 347889999999999999975 999
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
++| ++ |.++|++.||++|||++||+++|+++||++++.|.+ . +.+..++.++++|.++
T Consensus 105 ~~l----~~--~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~---~-------------~~~~~~ipl~~~v~av 162 (245)
T 1oys_A 105 EKL----GE--RTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLI---K-------------AGTIKTNPITDFLAAI 162 (245)
T ss_dssp HHH----CS--CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHH---H-------------TTSSSSCCBCSCEEEE
T ss_pred hHC----CC--EEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhc---c-------------cCcccccCCCCceeEE
Confidence 999 44 467888889999999999999999999999997743 1 1123456778999999
Q ss_pred EEEEeCcEEE-EcCChHHHhcCCCeEEEEEcCCCcEEEEEecCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 155 TLTKVGKHYI-VDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 155 T~~~~~~~~l-~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~-~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
|||++++.++ +|||.+||..+++.++|+++++|+|+.+++.|+ .+++.++|.+|+++|.++++++++.++++|++.
T Consensus 163 s~g~~~g~~vl~Dp~~~Ee~~~~~~~~v~~~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 240 (245)
T 1oys_A 163 SVGIDKEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLGDS 240 (245)
T ss_dssp EEEEETTTEEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEEEECCEEEEecCCHHHHhcCCCcEEEEEcCCCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999988777 999999999999999999999999999999874 689999999999999999999999999998765
No 18
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=6.4e-35 Score=248.81 Aligned_cols=188 Identities=19% Similarity=0.178 Sum_probs=172.1
Q ss_pred CCCcEEEEEEEEEee--CCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCcee
Q 026528 1 MGSTDVIASVKAELG--RPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLV 78 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~--~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~ 78 (237)
+|+|+|+|+|+++.. .+...+|++|++.++++++|++++.++.+++++.+++++++|+++|++. |+++.|
T Consensus 47 ~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~r~~~~~~~re~ei~~li~r~l~~~-------i~~~~~- 118 (258)
T 3m7n_D 47 MGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFEAV-------IMKELF- 118 (258)
T ss_dssp ETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSSCCCSSCCHHHHHHHHHHHHHHHTT-------BCGGGS-
T ss_pred ECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCcccccccCCCCCHHHHHHHHHHHHHHHhh-------cCHHhC-
Confidence 599999999997554 3344689999999999999999998877778899999999999999986 888888
Q ss_pred EEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEE
Q 026528 79 VVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTK 158 (237)
Q Consensus 79 I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~ 158 (237)
| +|.|+|+++||++|||+++|+++|+++||+++++|+ +++|.++|+|+
T Consensus 119 --p---~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~---------------------------~~~v~avsvg~ 166 (258)
T 3m7n_D 119 --P---RSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPM---------------------------KGMITSVAVGK 166 (258)
T ss_dssp --T---TEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCB---------------------------SSEEEEEEEEE
T ss_pred --C---ceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCCC---------------------------CCceEEEEEEE
Confidence 3 599999999999999999999999999999999995 47899999999
Q ss_pred eCcEEEEcCChHHHhcCCCeEEEEE-cCC---CcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 159 VGKHYIVDATLEEESQMSSAVSISI-NRQ---GHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 159 ~~~~~l~Dpt~~EE~~~~~~l~i~~-~~~---g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
+++.+|+|||.+||..+++.++|++ +.. ++|+.+++.| +++.++|.+++++|.+++++++++++++|++.
T Consensus 167 i~~~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g--~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 240 (258)
T 3m7n_D 167 ADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDG--RMTRDEVKQAIELAKKGALQIYEMQREAILRR 240 (258)
T ss_dssp ETTEEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEEE--EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEecC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 677 8999999987 59999999999999999999999999998863
No 19
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-35 Score=248.59 Aligned_cols=189 Identities=16% Similarity=0.184 Sum_probs=160.5
Q ss_pred CCCcEEEEEEEEEee--CCCCCCCCCceEEEEEeeCCCCCCCcCC--CCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCc
Q 026528 1 MGSTDVIASVKAELG--RPSAMQPDKGKVAIFVDCSPTAEPTFEG--RGGEELSAELSSALQHCLLGGKSGAGAGIDLSS 76 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~--~p~~~~p~~G~i~~~v~~~~~~~~~~~~--~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~ 76 (237)
+|+|+|+|+|+++.. .|....|++|.+.++++++|++++.|.. +++++.+++++++|++.|++. ++++.
T Consensus 44 ~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~r~g~~~~~~~~~s~li~r~l~~~-------i~~~~ 116 (246)
T 2wp8_B 44 QGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFERSKSSHKNERRVLEIQTSLVRMFEKN-------VMLNI 116 (246)
T ss_dssp ETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC--------------CHHHHHHHHHHHHHHHHH-------BCTTT
T ss_pred ECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCcccccccccCCCCChhHHHHHHHHHHHHHHh-------hhHHH
Confidence 599999999999987 2345689999999999999999988764 356789999999999999987 88887
Q ss_pred eeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEE
Q 026528 77 LVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTL 156 (237)
Q Consensus 77 L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~ 156 (237)
| | +|.|+|+++||++|||++||+++|+++||++++||. +++|.++|+
T Consensus 117 ~---p---~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP~---------------------------~~~v~avs~ 163 (246)
T 2wp8_B 117 Y---P---RTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISM---------------------------FDYISGISV 163 (246)
T ss_dssp S---C---SEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCB---------------------------SSCEEEEEE
T ss_pred C---C---CeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCcc---------------------------cCceeEEEE
Confidence 7 2 699999999999999999999999999999999994 478999999
Q ss_pred EEeCcEEEEcCChHHHhcCCCeEEEEE-cCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 026528 157 TKVGKHYIVDATLEEESQMSSAVSISI-NRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAADA 232 (237)
Q Consensus 157 ~~~~~~~l~Dpt~~EE~~~~~~l~i~~-~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~~ 232 (237)
|++++.+++|||.+|| .+++.++|++ +..++|+.+++.| +++.+.|.+|+++|.++++++.+.+++++++...
T Consensus 164 g~~~~~~l~Dp~~~Ee-~~~~~l~v~~~~~~~~i~~i~~~g--~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 237 (246)
T 2wp8_B 164 GLYDTTPLLDTNSLEE-NAMSTVTLGVVGKSEKLSLLLVED--KIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQ 237 (246)
T ss_dssp EEETTEEESSCCHHHH-HHSEEEEEEEETTSSCEEEEEECS--CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEECCCchhh-ccCceEEEEEeCCCCCEEEEEecC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999 5788999999855 5899999999999999999999999999987643
No 20
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=8.5e-34 Score=239.36 Aligned_cols=180 Identities=14% Similarity=0.115 Sum_probs=155.1
Q ss_pred CCCcEEEEEEEEEee-CCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeE
Q 026528 1 MGSTDVIASVKAELG-RPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVV 79 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~-~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I 79 (237)
+|+|+|+|+|+++.. .|...+|++|.+.+ +++|+. +++++.+++++++|++.|++. |+
T Consensus 51 ~G~T~Vl~~V~g~~~~~~~~~~~~~g~l~~--~~~p~~------g~~~~~e~~~~~li~r~l~~~-------------i~ 109 (237)
T 2nn6_D 51 QGDTSVLAGVYGPAEVKVSKEIFNKATLEV--ILRPKI------GLPGVAEKSRERLIRNTCEAV-------------VL 109 (237)
T ss_dssp ETTEEEEEEEEEEEECC------CCEEEEE--EEECSS------SCCCHHHHHHHHHHHHHHHHH-------------CG
T ss_pred ECCcEEEEEEeCCCcccccccCCCcEEEEE--EecCCC------CCCCccHHHHHHHHHHHHHHH-------------hc
Confidence 599999999999998 45567788887766 456653 345688999999999998754 44
Q ss_pred EcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEe
Q 026528 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159 (237)
Q Consensus 80 ~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~ 159 (237)
.+++.+|.|+||+.||++|||++||+++|+++||+|+++|+ +++|.++|+|++
T Consensus 110 ~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~---------------------------~~~v~avs~g~~ 162 (237)
T 2nn6_D 110 GTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPM---------------------------RALFCGVACALD 162 (237)
T ss_dssp GGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCC---------------------------SSCEEEEEEEEC
T ss_pred hhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCCc---------------------------ccCeeeEEEEEe
Confidence 46677899999999999999999999999999999999995 479999999999
Q ss_pred -CcEEEEcCChHHHhcCCCeEEEEEcCCC-cEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 160 -GKHYIVDATLEEESQMSSAVSISINRQG-HICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 160 -~~~~l~Dpt~~EE~~~~~~l~i~~~~~g-~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
++.+++||+.+||+.+++.++|+++.++ +|+.+++.|+ ++.+.|.+++++|.+++++|+++++++|++.
T Consensus 163 ~~~~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~--~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 233 (237)
T 2nn6_D 163 SDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGL--YSDTELQQCLAAAQAASQHVFRFYRESLQRR 233 (237)
T ss_dssp TTCCEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEEES--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEeCCCHHHHhccCCceEEEEcCCCCCEEEEEEeCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999876 8999999864 9999999999999999999999999999875
No 21
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=4.1e-33 Score=239.66 Aligned_cols=188 Identities=19% Similarity=0.222 Sum_probs=167.9
Q ss_pred CCCcEEEEEEEEEeeCCCC-C------------CCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCC
Q 026528 1 MGSTDVIASVKAELGRPSA-M------------QPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSG 67 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~-~------------~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~ 67 (237)
+|+|+|+|+|+++...|.. + .+++|.+.++++++|++++.++.+++++.+++++++|++.|++.
T Consensus 57 ~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~~~e~~~s~li~r~l~~~--- 133 (272)
T 2nn6_F 57 AGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPA--- 133 (272)
T ss_dssp SSSCEEEEEEEEEECC-------------------CBCEEEEEEEECTTSSSSCCCSCCHHHHHHHHHHHHHHHTTT---
T ss_pred eCCeEEEEEEECCCcccccccccccccccccccCCCceEEEEEEEecCCCcCCccCCCCCHHHHHHHHHHHHHHHHh---
Confidence 6999999999999986653 2 57889999999999999998887788999999999999999987
Q ss_pred CCCCCCCCceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCcccccccc
Q 026528 68 AGAGIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDT 147 (237)
Q Consensus 68 ~~~~id~e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (237)
++++.+ | .|.|+|+++||++|||+++|+++|+++||++++||+
T Consensus 134 ----i~~~~~---p---~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP~--------------------------- 176 (272)
T 2nn6_F 134 ----VRLGRY---P---RAQLEVSALLLEDGGSALAAALTAAALALADAGVEM--------------------------- 176 (272)
T ss_dssp ----BCSTTS---B---TCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCB---------------------------
T ss_pred ----ccHHHC---C---ceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCcc---------------------------
Confidence 777765 3 389999999999999999999999999999999996
Q ss_pred CCCceEEEEEE---eCcEEEEcCChHHHhcCCCeEEEEE-cCCCcEEEEEecCCcccCH-HHHHHHHHHHHHHHHHHHHH
Q 026528 148 SGVPVITTLTK---VGKHYIVDATLEEESQMSSAVSISI-NRQGHICGMIKRGGVGLDP-SVILDMISVANFVSRQLMDK 222 (237)
Q Consensus 148 ~~~Pi~vT~~~---~~~~~l~Dpt~~EE~~~~~~l~i~~-~~~g~i~~i~~~G~~~i~~-~~l~~~i~~a~~~~~~l~~~ 222 (237)
++++.++|+|+ +++.+|+|||.+||..++..++|++ +..++|+.+++.|+ ++. +.|.+|+++|.+++++++++
T Consensus 177 ~~~v~avsvg~~~~~~~~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~g~--~~~~~~l~~~l~~A~~~~~~i~~~ 254 (272)
T 2nn6_F 177 YDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGE--GGLTESWAEAVRLGLEGCQRLYPV 254 (272)
T ss_dssp SSCCEEEECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEECC--SSCTTTTHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEEEEeeccCCeEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEEecC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999 8899999999999999999999997 56789999999974 888 99999999999999999999
Q ss_pred HHHHHHhc
Q 026528 223 LDSEIAAA 230 (237)
Q Consensus 223 l~~~l~~~ 230 (237)
+++++++.
T Consensus 255 ~~~~l~~~ 262 (272)
T 2nn6_F 255 LQQSLVRA 262 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 22
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=99.97 E-value=1.4e-31 Score=226.69 Aligned_cols=182 Identities=19% Similarity=0.151 Sum_probs=147.1
Q ss_pred CCCcEEEEEEEEEee-CCCCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeE
Q 026528 1 MGSTDVIASVKAELG-RPSAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVV 79 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~-~p~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I 79 (237)
+|+|+|+|+|+++.. .|...+|+++.+.+ +++|.. ++++..+.+++++|++.|++. |+
T Consensus 35 ~G~T~Vl~~V~g~~~~~~~~~~~~~~~~~~--~~~P~~------g~~~~~~~e~~~li~r~l~~l-------------~~ 93 (246)
T 3hkm_A 35 QGDTIVLAAVYGPKPGTRKGENPEKASIEV--VWKPMT------GQIGKQEKEYEMTLKRTLQSI-------------CL 93 (246)
T ss_dssp ETTEEEEEEECCCEECCCTTSCSSSCEEEE--EEECSS------SCCCTTHHHHHHHHHHHHHHH-------------BC
T ss_pred ECCeEEEEEEecCcCCCcccCCCccEEEEE--EeCCCC------CCCChhHHHHHHHHHHHHHHh-------------cC
Confidence 599999999998764 45566788876654 567732 234567889999999998753 44
Q ss_pred EcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEe
Q 026528 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159 (237)
Q Consensus 80 ~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~ 159 (237)
.+++.+|.|+|++.||++|||++||+++|+++||+++++|. +++|.++|+|++
T Consensus 94 ~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~---------------------------~~~v~avs~g~~ 146 (246)
T 3hkm_A 94 LTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPL---------------------------KHLAVAIGCGVL 146 (246)
T ss_dssp TTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCB---------------------------SSCEEEEEEEEC
T ss_pred ccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCC---------------------------CCceEEEEEEEE
Confidence 45667899999999999999999999999999999999994 478999999998
Q ss_pred -CcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecC----------------CcccCHHHHHHHHHHHHHHHHHHHHH
Q 026528 160 -GKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRG----------------GVGLDPSVILDMISVANFVSRQLMDK 222 (237)
Q Consensus 160 -~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G----------------~~~i~~~~l~~~i~~a~~~~~~l~~~ 222 (237)
++.+++|||.+||+.+++.++|+++++ .+|.+++.| ++.++.++|.+|++.|.++++++.++
T Consensus 147 ~~g~~llDpt~~Ee~~~~~~~~va~~~~-~i~~lq~~g~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~ 225 (246)
T 3hkm_A 147 EDGEVILDTNKAEEQQLKSFAHLVFPNS-RKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDF 225 (246)
T ss_dssp TTSCEEESCCHHHHTTCSEEEEEEEEC---------------------CCCEEEEECEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEECCCHHHHhcCCeeEEEEEeCC-ceEEEeecccccccccccceeeeeccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999988 599999876 46799999999999999999999999
Q ss_pred HHHHHHhcc
Q 026528 223 LDSEIAAAD 231 (237)
Q Consensus 223 l~~~l~~~~ 231 (237)
++++|++..
T Consensus 226 ~~~~l~~~~ 234 (246)
T 3hkm_A 226 MRTTLQKQA 234 (246)
T ss_dssp HHTTTC---
T ss_pred HHHHHHhhh
Confidence 999987643
No 23
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.95 E-value=1.2e-27 Score=228.10 Aligned_cols=191 Identities=12% Similarity=0.092 Sum_probs=156.9
Q ss_pred CCCcEEEEEEEEEeeC--CCCC---CCCCceEEEEEeeCCCCCCCcC-CCCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGR--PSAM---QPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~--p~~~---~p~~G~i~~~v~~~~~~~~~~~-~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|+.+..+ |.++ .+++|++.++++++|++++.+. .++++.++..++++++++|++. +++
T Consensus 351 ~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~st~e~~r~g~p~~REi~~~~li~raL~~v-------I~~ 423 (723)
T 3cdi_A 351 RGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAV-------MPD 423 (723)
T ss_dssp ETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTCCCCC-----CTTHHHHHHHHHHHTT-------SCC
T ss_pred ECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCCccccccCCCCCHHHHHHHHHHHHHHHHh-------cCc
Confidence 5999999999865543 2222 4688999999999999988763 3345677888999999999976 886
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
+.+ +.|+|+|++.||++|||+++|+++|+++||+|+++|+ ++++.++
T Consensus 424 ~~~------~p~tI~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl---------------------------~~~vaav 470 (723)
T 3cdi_A 424 MDK------FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI---------------------------KAAVAGI 470 (723)
T ss_dssp SSS------SCSCEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCC---------------------------SSCCEEE
T ss_pred ccC------CCEEEEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCc---------------------------ccceeeE
Confidence 544 4589999999999999999999999999999999996 3678999
Q ss_pred EEEEeC--c--EEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026528 155 TLTKVG--K--HYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229 (237)
Q Consensus 155 T~~~~~--~--~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~-~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~ 229 (237)
|+|+++ + .+|+||+.+||.+++..++|+.+.+| |+.+++.|. ++++.+.|.+|++.|.+++++|++.++++|.+
T Consensus 471 s~gli~~g~~~~iL~Dp~~~Ed~~~d~d~~Va~t~~g-I~~lq~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~~ 549 (723)
T 3cdi_A 471 AMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 549 (723)
T ss_dssp EEEEEEETTEEEEESSCCGGGGGGCSEEEEEEECSSC-EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred EEEEEcCCCceEEEECCChHHhhhccceeeecccCCc-eEEEEeCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999995 3 59999999999999999999999888 999999875 57999999999999999999999999999976
Q ss_pred ccc
Q 026528 230 ADA 232 (237)
Q Consensus 230 ~~~ 232 (237)
...
T Consensus 550 ~~~ 552 (723)
T 3cdi_A 550 PRG 552 (723)
T ss_dssp ---
T ss_pred cch
Confidence 543
No 24
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=99.95 E-value=4.4e-30 Score=214.61 Aligned_cols=178 Identities=17% Similarity=0.162 Sum_probs=140.8
Q ss_pred CCCcEEEEEEEEEeeCC-CCCCCCCceEEEEEeeCCCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCCCceeE
Q 026528 1 MGSTDVIASVKAELGRP-SAMQPDKGKVAIFVDCSPTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGIDLSSLVV 79 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p-~~~~p~~G~i~~~v~~~~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~e~L~I 79 (237)
+|+|+|+|+|+++...+ ....|++|.+ +|+++|+..+ +++. +++++++|.|++. ++++.+
T Consensus 26 ~G~T~Vl~~V~~~~e~~~~~~~~~~~~l--~v~~~p~~G~------~~~~--e~~~li~r~l~~~-------i~~~~~-- 86 (222)
T 3krn_A 26 QGATCIWASCSGPGDVHASKASDEAMTL--DISYRANCGD------NKFN--VLNNIIHSTLSNA-------INLELF-- 86 (222)
T ss_dssp BTTCEEECCCCSSCC---------------CCCSSCCCC--------CCS--SCTTHHHHC--CC-------SCC-----
T ss_pred ECCcEEEEEEECCCCCcccccCCceEEE--EEEEcCCCCC------CCHH--HHHHHHHHHHHHh-------ccHHhC--
Confidence 59999999999987533 2345566554 6778886532 2222 7899999999987 777554
Q ss_pred EcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEEEEEEe
Q 026528 80 VEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVITTLTKV 159 (237)
Q Consensus 80 ~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~vT~~~~ 159 (237)
| .|.|+|+++||++|||+++|+++|+++||.++++|+ +++|.++|+|++
T Consensus 87 -p---~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~---------------------------~~~v~avsvg~~ 135 (222)
T 3krn_A 87 -P---HTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPF---------------------------ETVFCGVLIVRV 135 (222)
T ss_dssp ------CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCT---------------------------TSCCCCCCCEEC
T ss_pred -C---CcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCc---------------------------cCcEEEEEEEEE
Confidence 3 489999999999999999999999999999999995 478999999999
Q ss_pred CcEEEEcCChHHHhcCCCeEEEEE---cC-CCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 160 GKHYIVDATLEEESQMSSAVSISI---NR-QGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 160 ~~~~l~Dpt~~EE~~~~~~l~i~~---~~-~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
++.+++|||.+||..++..++|++ ++ .++|+.+++.| .++.++|.++++.|.+.++++.+++++++++.
T Consensus 136 ~g~~llDpt~~Ee~~~~~~l~va~~~~~~~~~~i~~vq~~g--~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~ 208 (222)
T 3krn_A 136 KDELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAIG--HWDFIQLEAAWSLAQPSASAIFDFYKTVMKRK 208 (222)
T ss_dssp SSSEESSCCTTTTTSCC-CCCCEECCCSSSSCCEEEECCBS--SCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCHHHHhccCccEEEEEEccCCCCCCEEEEEEeC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 76 68999999886 49999999999999999999999999998764
No 25
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=218.63 Aligned_cols=189 Identities=15% Similarity=0.181 Sum_probs=166.4
Q ss_pred CCCcEEEEEEEEEeeCCCC--C-------CCCCceEEEEEeeCCCCCCCcC-CCCCchhHHHHHHHHHHHHhcCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSA--M-------QPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGA 70 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~--~-------~p~~G~i~~~v~~~~~~~~~~~-~~~~~~~~~~ls~~L~~~l~~~~~~~~~ 70 (237)
+|+|+|+|+|+++...|.. + .+++|++.++++++|++++.+. .++++.++..++++++++|++.
T Consensus 349 ~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~rREi~~~~Li~raLr~v------ 422 (630)
T 3u1k_A 349 RGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPV------ 422 (630)
T ss_dssp ETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGG------
T ss_pred ECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEecCCcccccccCCCCChHHHHHHHHHHHHHHhh------
Confidence 5999999999998776543 1 3788999999999999988754 3456788999999999999865
Q ss_pred CCCCCceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCC
Q 026528 71 GIDLSSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150 (237)
Q Consensus 71 ~id~e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (237)
+|. ++.|.|+|++.||++|||.++|+++|+++||+|+++|+ +++
T Consensus 423 -i~~--------~~p~tI~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl---------------------------~~~ 466 (630)
T 3u1k_A 423 -IPR--------DFPFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPI---------------------------SSA 466 (630)
T ss_dssp -SCT--------TCSSEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCC---------------------------SSC
T ss_pred -Ccc--------cCCeEEEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCCc---------------------------ccc
Confidence 763 23578999999999999999999999999999999995 478
Q ss_pred ceEEEEEEeC------c-----EEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCc-ccCHHHHHHHHHHHHHHHHH
Q 026528 151 PVITTLTKVG------K-----HYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGV-GLDPSVILDMISVANFVSRQ 218 (237)
Q Consensus 151 Pi~vT~~~~~------~-----~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~-~i~~~~l~~~i~~a~~~~~~ 218 (237)
+.++|+|+++ + .+|+||+.+|+..++..+.|+.+.+| |+.+++.|.. +++.+.|.+|+++|.+++++
T Consensus 467 Vaavs~gli~~~~~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va~t~~g-It~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~ 545 (630)
T 3u1k_A 467 VAGVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKE 545 (630)
T ss_dssp CEEEEEEEEEEECSSSSCEEEEEEEESCCHHHHHTSSEEEEEEECSSC-EEEEEEEECSSCBCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEecCCCcccccccCceEEecCCHHHHhhCcceEEEEecCCc-eEEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999997 3 79999999999999999999999888 9999999864 79999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 026528 219 LMDKLDSEIAAADA 232 (237)
Q Consensus 219 l~~~l~~~l~~~~~ 232 (237)
|++.++++|.+...
T Consensus 546 I~~~m~~al~~~~~ 559 (630)
T 3u1k_A 546 ILQIMNKTISKPRA 559 (630)
T ss_dssp HHHHHHHHCSSCCS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999986543
No 26
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.94 E-value=5.4e-26 Score=217.36 Aligned_cols=189 Identities=10% Similarity=0.075 Sum_probs=163.2
Q ss_pred CCCcEEEEEEEEEeeCCCC-----CCCCCceEEEEEeeCCCCCCCcC-CCCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSA-----MQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~-----~~p~~G~i~~~v~~~~~~~~~~~-~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|+.....|.+ ..+++|++.++++++|++++.+. .++++..+.+++++++++|+.. ++.
T Consensus 386 ~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~st~e~~~~g~~~~reie~~~li~raL~~v-------I~~ 458 (757)
T 1e3p_A 386 RGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIVPV-------LPT 458 (757)
T ss_dssp ETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGG-------CCC
T ss_pred ECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCcccccccCCCCCchhHHHHHHHHHHHHHHh-------ccc
Confidence 5999999999854443321 25688999999999999988764 3467899999999999999876 552
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
. +++.|.|+|++.||++|||.++|+++|+++||+|+++|+ ++++.++
T Consensus 459 ~------~~~P~tI~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~---------------------------k~~Vaav 505 (757)
T 1e3p_A 459 R------EEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPL---------------------------KAPVAGI 505 (757)
T ss_dssp T------TTSCEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCC---------------------------SSCCEEE
T ss_pred c------ccCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCCc---------------------------ccceEEE
Confidence 1 345689999999999999999999999999999999995 3678899
Q ss_pred EEEEe----Cc----EEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCC-cccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026528 155 TLTKV----GK----HYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDKLDS 225 (237)
Q Consensus 155 T~~~~----~~----~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~-~~i~~~~l~~~i~~a~~~~~~l~~~l~~ 225 (237)
|+|++ ++ .+|+||+.+||.+++..++|+.+. +.|+.+++.|. ++++.+.|.+|++.|.+++++|.+.+++
T Consensus 506 s~gli~eg~dg~~~~~iLlDp~~~Ed~~gd~d~~Va~t~-~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m~~ 584 (757)
T 1e3p_A 506 AMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTK-EFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMME 584 (757)
T ss_dssp EEEEEEEESSSCEEEEEEESCCHHHHHHCSEEEEEEECS-SSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCccceeEEeCCCHHHHhccCceEEEEecC-CeEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 43 799999999999999999999654 67999999886 6799999999999999999999999999
Q ss_pred HHHhc
Q 026528 226 EIAAA 230 (237)
Q Consensus 226 ~l~~~ 230 (237)
+|.+.
T Consensus 585 al~~~ 589 (757)
T 1e3p_A 585 AIDTP 589 (757)
T ss_dssp HCSSC
T ss_pred Hhccc
Confidence 99775
No 27
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.94 E-value=1.4e-25 Score=207.42 Aligned_cols=190 Identities=12% Similarity=0.108 Sum_probs=156.2
Q ss_pred CCCcEEEEEEEEEeeCCC-----CCCCCCceEEEEEeeCCCCCCCcC-CCCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPS-----AMQPDKGKVAIFVDCSPTAEPTFE-GRGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~-----~~~p~~G~i~~~v~~~~~~~~~~~-~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|+....++. ...+++|++.++++++|++++.+. .++++..+..++++++++|++. +++
T Consensus 345 ~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~st~e~~~~g~~~~Reie~~~li~raL~~v-------I~~ 417 (549)
T 3gme_A 345 RGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAV-------MPD 417 (549)
T ss_dssp ETTEEEEEEEEEEC---------------CCEEEEEECCGGGTTCCCCSSCCCSSHHHHHHHHHHHHTTT-------CCC
T ss_pred ECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCCcCCcccCCCCChhHHHHHHHHHHHHHHh-------cCc
Confidence 599999999974332211 123578999999999999987644 2346788999999999999876 886
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
+.+ +.|.|+|++.||++|||.++|+++|+++||+|+++|+ ++++.++
T Consensus 418 ~~~------~P~tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGvPm---------------------------~~~Vaav 464 (549)
T 3gme_A 418 MDK------FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI---------------------------KAAVAGI 464 (549)
T ss_dssp TTT------CCCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCC---------------------------SSCCEEE
T ss_pred ccc------CCeEEEEEEEEEECCCCHHHHHHHHHHHHHHhCCCCc---------------------------ccceeEE
Confidence 544 3478999999999999999999999999999999995 4789999
Q ss_pred EEEEeCc----EEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026528 155 TLTKVGK----HYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229 (237)
Q Consensus 155 T~~~~~~----~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~-~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~ 229 (237)
|+|++++ .+++||+.+|+..++..+.|+.+.+| ++.++..+. ..++.+.|.+|+++|.+++.+|++.++++|.+
T Consensus 465 s~Gli~~g~~~~iL~D~~~~Ed~~~d~d~~Va~t~~g-italqmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~~ 543 (549)
T 3gme_A 465 AMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 (549)
T ss_dssp EEEEEEETTEEEEEESCCHHHHHHSSEEEEEEECSSC-EEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred EEEEEcCCCceEEEecCChHHHccCCceEEEEecCCC-eEEEEEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999976 78999999999999999999988776 777766442 24999999999999999999999999999876
Q ss_pred cc
Q 026528 230 AD 231 (237)
Q Consensus 230 ~~ 231 (237)
-.
T Consensus 544 pr 545 (549)
T 3gme_A 544 PR 545 (549)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 28
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.93 E-value=5.7e-25 Score=208.90 Aligned_cols=191 Identities=11% Similarity=0.098 Sum_probs=161.9
Q ss_pred CCCcEEEEEEEEEeeCCC-----CCCCCCceEEEEEeeCCCCCCCcCC-CCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPS-----AMQPDKGKVAIFVDCSPTAEPTFEG-RGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~-----~~~p~~G~i~~~v~~~~~~~~~~~~-~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|+..-..|. ...+++|++.++++++|+++..+.. ++++.++.+++++++++|++. ++.
T Consensus 361 ~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~st~er~~~g~~~~Reie~~~li~raL~~v-------I~~ 433 (726)
T 4aid_A 361 RGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRALRPM-------LPT 433 (726)
T ss_dssp ETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGG-------SCC
T ss_pred eCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCcccccccCCCcchhhHHHHHHHHHHHHHh-------cCc
Confidence 599999999974433332 2246789999999999999876543 347889999999999999876 663
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCceEE
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPVIT 154 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi~v 154 (237)
. +++.|+|+|++.||++|||.++|+++|+++||+|+++|+ ++++.++
T Consensus 434 ~------~~~P~tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm---------------------------~~~Vaav 480 (726)
T 4aid_A 434 K------EDFPYTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPL---------------------------VRPVSGI 480 (726)
T ss_dssp T------TTCCCEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCC---------------------------SSCCEEE
T ss_pred c------ccCCeEEEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCcc---------------------------ccCeeEE
Confidence 2 344578999999999999999999999999999999996 4788999
Q ss_pred EEEEeCc----EEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026528 155 TLTKVGK----HYIVDATLEEESQMSSAVSISINRQGHICGMIKRGG-VGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229 (237)
Q Consensus 155 T~~~~~~----~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~-~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~ 229 (237)
|+|++++ .+++||+.+|+..++..+.|+.+.+| |+.++..|. .+++.+.|.+|+++|.+.+.+|++.++++|.+
T Consensus 481 svGli~~g~~~~iLlD~~~~Ed~~gd~d~~Va~t~~g-It~lQ~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~~ 559 (726)
T 4aid_A 481 AMGLILEQDGFAVLSDILGDEDHLGDMDFKVAGTSEG-LTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDA 559 (726)
T ss_dssp EEEEEECSSCEEEEESCCTTGGGGSSEEEEEEEETTE-EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEEEcCCCceEEEecCChhHHhcCCceEEEEecCCc-eEEEEecCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999854 58889999999999999999987655 999999884 47999999999999999999999999999876
Q ss_pred ccc
Q 026528 230 ADA 232 (237)
Q Consensus 230 ~~~ 232 (237)
...
T Consensus 560 ~r~ 562 (726)
T 4aid_A 560 PRA 562 (726)
T ss_dssp CCS
T ss_pred hhh
Confidence 543
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=191.27 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=153.9
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCC---C-CcC--CCCCchhHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAE---P-TFE--GRGGEELSAELSSALQHCLLGGKSGAGAGIDL 74 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~---~-~~~--~~~~~~~~~~ls~~L~~~l~~~~~~~~~~id~ 74 (237)
+|+|+|+|+|+++...|. . +..-+.|+++..++++ | .|. .++|++.+..+++++.|.|++. +++
T Consensus 36 ~G~T~VL~tv~~~~~~~~-~--df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~e~lisRlIdR~lRp~-------~~~ 105 (630)
T 3u1k_A 36 SGDTAVMVTAVSKTKPSP-S--QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDKEILTSRIIDRSIRPL-------FPA 105 (630)
T ss_dssp ETTEEEEEEEEECSSCCS-S--SSCCEEEEEECSEETTTTEECTTC-----CCHHHHHHHHHHHHHHGGG-------SCT
T ss_pred ECCeEEEEEEEecCCCCC-C--CeeEEEEEEEecccccCCCCccccccCCCCCHHHHHHHHHHhHHhhhc-------ccc
Confidence 599999999999876442 1 3344777777666665 2 232 1347889999999999999987 654
Q ss_pred CceeEEcCeEEEEEEEEEEEEcCCCCH--HHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCCce
Q 026528 75 SSLVVVEGKVCWDLYIDGLVISSDGNL--LDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGVPV 152 (237)
Q Consensus 75 e~L~I~~g~~~w~l~idv~VL~~dGnl--~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pi 152 (237)
.++|..+|+++||++||+. ..++++|+.+||.+++||+ ++...
T Consensus 106 --------~~~~~~qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~---------------------------~~~va 150 (630)
T 3u1k_A 106 --------GYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPW---------------------------NGPVG 150 (630)
T ss_dssp --------TCCCCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCC---------------------------CCCCE
T ss_pred --------cCCCceEEEEEEEECCCCCCHHHHHHHHHHHHHhccCCCc---------------------------CCCeE
Confidence 3457788999999999987 6689999999999999996 35677
Q ss_pred EEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026528 153 ITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAAD 231 (237)
Q Consensus 153 ~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~~ 231 (237)
++++|++++.+++|||.+|++.++..++|+.+++|+|+.++..| ..++.++|.+++++|.+.++++++++++.++..-
T Consensus 151 av~vg~i~g~~vldPt~~E~~~s~~dl~Va~t~~~~i~mve~~~-~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~ 228 (630)
T 3u1k_A 151 AVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASA-ENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETG 228 (630)
T ss_dssp EEEEEEETTEEEESCCHHHHHTEEEEEEEEEETTTEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCEEEECCCHHHHhhCCceEEEEEccCCcEEEEECCC-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999888999887654 4589999999999999999999999999988753
No 30
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.87 E-value=1.6e-21 Score=185.89 Aligned_cols=183 Identities=15% Similarity=0.197 Sum_probs=152.0
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeCCCCC-----C-Cc--CCCCCchhHHHHHHHHHHHHhcCCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCSPTAE-----P-TF--EGRGGEELSAELSSALQHCLLGGKSGAGAGI 72 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~~~~~-----~-~~--~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~i 72 (237)
+|+|.|+|+|+++. +| +|..+++.++|++.+..+ | .| +.++|++.+..++|++.|.|++. +
T Consensus 41 ~G~T~Vl~tv~~~~-~~---~~~~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~l~sRlIdR~lRpl-------f 109 (723)
T 3cdi_A 41 MDDTAVFVTVVGQK-KA---KPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPL-------F 109 (723)
T ss_dssp ETTEEEEEEEEECS-SC---CSSCCSCCEEEEEEECGGGGTCCCC-------CCCHHHHHHHHHHHHHHGGG-------S
T ss_pred ECCEEEEEEEEecC-CC---CCCCCeeeEEEEEeEeccccccCCCccccCCCCCChHHhHHHHHhCccchhc-------c
Confidence 59999999999984 34 245678888998886533 2 23 23567899999999999999864 4
Q ss_pred CCCceeEEcCeEEEEEEEEEEEEcCCCCH-HH-HHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCC
Q 026528 73 DLSSLVVVEGKVCWDLYIDGLVISSDGNL-LD-ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150 (237)
Q Consensus 73 d~e~L~I~~g~~~w~l~idv~VL~~dGnl-~d-a~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (237)
|+.++|.++|+++||++||+. +| ++++|+.+||..+++|. +..
T Consensus 110 --------p~~~~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~---------------------------~~p 154 (723)
T 3cdi_A 110 --------PEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPF---------------------------NGP 154 (723)
T ss_dssp --------CTTCCSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSC---------------------------CCC
T ss_pred --------cccCcceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCC---------------------------CCC
Confidence 456678999999999999985 67 99999999999999993 345
Q ss_pred ceEEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 151 PVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 151 Pi~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
+.++++|++++.+++|||.+|++.++..++|+.+.++ +.|.+.|+..++.++|.+++..|.+.++++.+++++++++.
T Consensus 155 v~av~vg~i~g~~v~nPt~~e~~~s~~~lvvagt~~~--i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~ 232 (723)
T 3cdi_A 155 IGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA--VLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 232 (723)
T ss_dssp CCCEEEEEETTEEEESCCTTGGGGCSEEEEEEECSSC--EEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred eEEEEEEEECCEEEECcCHHHHHhCCceEEEEccCCE--EEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999976644 45666777789999999999999999999999999999876
Q ss_pred c
Q 026528 231 D 231 (237)
Q Consensus 231 ~ 231 (237)
-
T Consensus 233 ~ 233 (723)
T 3cdi_A 233 G 233 (723)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.83 E-value=3.5e-19 Score=169.29 Aligned_cols=182 Identities=17% Similarity=0.107 Sum_probs=148.4
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeC---------CCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS---------PTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAG 71 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~---------~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~ 71 (237)
+|+|+|+|+++++...| +..+++-+.|++. |.+...++ ++|++.+..++|++.|.|++.
T Consensus 49 ~GdT~VL~tv~~~~~~~----~g~df~pltveY~ek~~a~G~iPg~~~~RE-Grps~~~~li~RlIdR~lRpl------- 116 (726)
T 4aid_A 49 MGETVVLATAVFAKSQK----PGQDFFPLTVNYQEKTFAAGKIPGGFFKRE-GRPSEKETLVSRLIDRPIRPL------- 116 (726)
T ss_dssp ETTEEEEEEEEECSSCC----TTCCSCCEEEEEEECGGGGTCCCCSTTCSC-CSCCHHHHHHHHHHHHHHGGG-------
T ss_pred ECCeEEEEEEEecCCCC----CCCCCcCceeeeeeehhhcccCCCcccCCC-CCCCchhhhHHHHhCCccccc-------
Confidence 59999999999986532 3445655666653 33333344 456789999999999999986
Q ss_pred CCCCceeEEcCeEEEEEEEEEEEEcCCCC-HHH-HHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCC
Q 026528 72 IDLSSLVVVEGKVCWDLYIDGLVISSDGN-LLD-ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSG 149 (237)
Q Consensus 72 id~e~L~I~~g~~~w~l~idv~VL~~dGn-l~d-a~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (237)
+|+.- .|.+.|+++||+.||+ .+| ++++|+++||...++|. +.
T Consensus 117 f~~~~--------~~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~---------------------------~~ 161 (726)
T 4aid_A 117 FVKGF--------KNEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPF---------------------------MG 161 (726)
T ss_dssp BCTTC--------CSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSB---------------------------CC
T ss_pred cccCC--------ccceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCCc---------------------------CC
Confidence 66543 3568999999999875 567 57899999999999984 35
Q ss_pred CceEEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026528 150 VPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229 (237)
Q Consensus 150 ~Pi~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~ 229 (237)
...++++|++++.+++|||.+|++.++..++|+.+.++ ++.++ .++..++.++|.+++++|.+.+++++++++++++.
T Consensus 162 ~vaaV~Vg~i~g~~vldPt~~E~~~s~~dl~va~t~~~-i~mve-~~~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~ 239 (726)
T 4aid_A 162 PIGAARVGWVDGAYVLNPTLDEMKESKMDLVVAGTADA-VMMVE-SEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEH 239 (726)
T ss_dssp CCEEEEEEEETTEEEESCCHHHHHTCSEEEEEEECSSC-EEEEE-EEESSBCHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CeEEEEEEEECCEEEECCCHHHHhhCceeEEEEEeCCe-EEEEE-ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999998876 66555 55568999999999999999999999999999887
Q ss_pred cc
Q 026528 230 AD 231 (237)
Q Consensus 230 ~~ 231 (237)
.-
T Consensus 240 ~g 241 (726)
T 4aid_A 240 AA 241 (726)
T ss_dssp HC
T ss_pred hC
Confidence 63
No 32
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.80 E-value=1.4e-18 Score=160.62 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=145.4
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeC---------CCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCC
Q 026528 1 MGSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS---------PTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAG 71 (237)
Q Consensus 1 lG~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~---------~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~ 71 (237)
+|+|+|+|+++++...| +..+++.+.|++. |.....++ ++|++.+..++|++.|.|++.
T Consensus 35 ~GdT~Vl~tv~~~~~~~----~g~df~Pltv~Y~e~~~a~G~iPg~~~~RE-Grps~~~~l~~RlIdR~lRpl------- 102 (549)
T 3gme_A 35 MDDTAVFVTVVGQKKAK----PGQDFFPLTVNYQERTYAAGRIPGSFFRRE-GRPSEGETLIARLIDRPIRPL------- 102 (549)
T ss_dssp ETTEEEEEEEEECSSCC----TTCCSCCEEEEEEECGGGTTCCCSCC------CCCHHHHHHHHHHHHHHGGG-------
T ss_pred ECCEEEEEEEEecCCCC----CCCCCccceeeeeeehhhcccCCCcCcCcC-CCCChhhhHHHHHhCCccccc-------
Confidence 59999999999976532 3456766666664 22222223 456789999999999999986
Q ss_pred CCCCceeEEcCeEEEEEEEEEEEEcCCC-CHHH-HHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCC
Q 026528 72 IDLSSLVVVEGKVCWDLYIDGLVISSDG-NLLD-ALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSG 149 (237)
Q Consensus 72 id~e~L~I~~g~~~w~l~idv~VL~~dG-nl~d-a~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (237)
+|+.-+ +.+.|+++||+.|| +..| ++++|+.+||...++|. +.
T Consensus 103 fp~~~~--------~evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~---------------------------~g 147 (549)
T 3gme_A 103 FPEGFV--------NEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPF---------------------------NG 147 (549)
T ss_dssp SCTTCC--------SCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCC---------------------------CC
T ss_pred cccCCc--------ccEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCCc---------------------------CC
Confidence 665443 45888999999987 6667 55799999999999984 35
Q ss_pred CceEEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026528 150 VPVITTLTKVGKHYIVDATLEEESQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQLMDKLDSEIAA 229 (237)
Q Consensus 150 ~Pi~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~ 229 (237)
...++++|++++.+++|||.+|.+.++..++|+.+.++ ++.++ .++..++.++|.++++.|.+.++++.+++++.++.
T Consensus 148 pvaaV~Vg~i~g~~vlnPt~~e~~~s~~dl~va~t~~~-i~mve-~e~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~ 225 (549)
T 3gme_A 148 PIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAA-VLMVE-SEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKE 225 (549)
T ss_dssp CCEEEEEEEETTEEEESCCTTTTTTCSBCEEEEECSSC-EEEEE-EEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CeeEEEEEEECCEEEECCCHHHHhhCceEEEEEecCCe-EEEEE-ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999998876 66665 44468999999999999999999999999999887
Q ss_pred cc
Q 026528 230 AD 231 (237)
Q Consensus 230 ~~ 231 (237)
.-
T Consensus 226 ~~ 227 (549)
T 3gme_A 226 AG 227 (549)
T ss_dssp HC
T ss_pred hC
Confidence 63
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.73 E-value=4.4e-16 Score=149.10 Aligned_cols=183 Identities=13% Similarity=0.030 Sum_probs=144.5
Q ss_pred CCcEEEEEEEEEeeCCCCCCCCCceEEEEEeeC---------CCCCCCcCCCCCchhHHHHHHHHHHHHhcCCCCCCCCC
Q 026528 2 GSTDVIASVKAELGRPSAMQPDKGKVAIFVDCS---------PTAEPTFEGRGGEELSAELSSALQHCLLGGKSGAGAGI 72 (237)
Q Consensus 2 G~T~Vi~~V~~ei~~p~~~~p~~G~i~~~v~~~---------~~~~~~~~~~~~~~~~~~ls~~L~~~l~~~~~~~~~~i 72 (237)
|+|+|+|++.++-.. +|...++.+.|+|. |.+...++ ++|++.+..++|++.|.|++. +
T Consensus 60 G~T~Vl~tv~~~~~~----~~~~df~pLtv~y~ek~~a~g~iPg~f~~RE-Grps~~e~l~~RlIdR~LRpl-------f 127 (757)
T 1e3p_A 60 DDTMVLSATTASKNP----KDQLDFFPLTVDVEERMYAAGKIPGSFFRRE-GRPSEDAILTCRLIDRPLRPS-------F 127 (757)
T ss_dssp TTEEEEEEEEEEEEE----CTTCSSCCEEEEEEECGGGGTCCCCSTTSSC-CSCCHHHHHHHHHHHHHHGGG-------B
T ss_pred CCeEEEEEEEecCCC----CCCCCCccEEEEEEecccccccCCCcccccC-cCCChHHHHHHHHHCCcchhc-------c
Confidence 999999999998763 12223444666663 22222223 456788999999999999986 7
Q ss_pred CCCceeEEcCeEEEEEEEEEEEEcCCCC--HHHHHHHHHHHHHhcCCCceEEEccCcCCCCCceEecCCccccccccCCC
Q 026528 73 DLSSLVVVEGKVCWDLYIDGLVISSDGN--LLDALGAAIKAALSNTGIPSVHVAAEAASDEQPEVDISDEEFLQFDTSGV 150 (237)
Q Consensus 73 d~e~L~I~~g~~~w~l~idv~VL~~dGn--l~da~~~A~~~AL~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (237)
|+..+ -.+.|++.||+.||. +.-++++|+.+||...++|. +..
T Consensus 128 p~~~~--------~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP~---------------------------~~~ 172 (757)
T 1e3p_A 128 KKGLR--------NEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPF---------------------------SGP 172 (757)
T ss_dssp CTTBC--------EEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSSB---------------------------CCC
T ss_pred ccCCC--------CceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCC---------------------------CCc
Confidence 65443 259999999999974 47789999999999999995 355
Q ss_pred ceEEEEEEeCcEEEEcCChHHHhcCCCeEEEEEcC----CCcEEEEEe--c---------CCcccCHHHHHHHHHHHHHH
Q 026528 151 PVITTLTKVGKHYIVDATLEEESQMSSAVSISINR----QGHICGMIK--R---------GGVGLDPSVILDMISVANFV 215 (237)
Q Consensus 151 Pi~vT~~~~~~~~l~Dpt~~EE~~~~~~l~i~~~~----~g~i~~i~~--~---------G~~~i~~~~l~~~i~~a~~~ 215 (237)
..++++|++++.+++|||.+|.+.++..++|+.+. .+.|..+.- + ++..++.++|.++++.|.+.
T Consensus 173 vaav~vg~~~g~~vlnPt~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~~~~~~~~~~~~se~~l~~al~~a~~~ 252 (757)
T 1e3p_A 173 IGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPF 252 (757)
T ss_dssp CEEEEEEEETTEEEESCCHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEEECCEEEECCCHHHHhcCceeEEEEeccccCCCCcEEEEEEecccccccccccccCCCCHHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999873 444555544 2 55689999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 026528 216 SRQLMDKLDSEIAAAD 231 (237)
Q Consensus 216 ~~~l~~~l~~~l~~~~ 231 (237)
++++.+++++++++..
T Consensus 253 i~~l~~~q~~~~~~~~ 268 (757)
T 1e3p_A 253 IKVLCKAQADLAAKAA 268 (757)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999888653
No 34
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=38.05 E-value=1.1e+02 Score=21.75 Aligned_cols=47 Identities=17% Similarity=0.078 Sum_probs=31.5
Q ss_pred hcCCCeEEEEEcCCCcEEEEEecCCc-ccCHHHHHHHHHHHHHHHHHH
Q 026528 173 SQMSSAVSISINRQGHICGMIKRGGV-GLDPSVILDMISVANFVSRQL 219 (237)
Q Consensus 173 ~~~~~~l~i~~~~~g~i~~i~~~G~~-~i~~~~l~~~i~~a~~~~~~l 219 (237)
....+.++|.++.++++..+...=.. .-+.+.|..++-.|...+.+-
T Consensus 39 ~sggG~V~Vt~~G~~ev~~i~Idp~~~~~d~E~LedlI~aA~ndA~~k 86 (112)
T 1j8b_A 39 ESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRR 86 (112)
T ss_dssp EEGGGTEEEEEETTCCEEEEEECGGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCEEEEEEecCceEEEEEECHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34467899999999999998875321 135666776666665555443
No 35
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=36.97 E-value=1.3e+02 Score=22.47 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=31.5
Q ss_pred cCCCeEEEEEcCCCcEEEEEecCC--cccCHHHHHHHHHHHHHHHHHH
Q 026528 174 QMSSAVSISINRQGHICGMIKRGG--VGLDPSVILDMISVANFVSRQL 219 (237)
Q Consensus 174 ~~~~~l~i~~~~~g~i~~i~~~G~--~~i~~~~l~~~i~~a~~~~~~l 219 (237)
...+.++|.++.++++..+...=. .+-+.+.|+.++-.|...|.+-
T Consensus 73 sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~k 120 (143)
T 1ybx_A 73 AGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRK 120 (143)
T ss_dssp ETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999887543 1234566777766665555443
No 36
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=35.90 E-value=1.1e+02 Score=21.24 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=31.1
Q ss_pred hcCCCeEEEEEcCCCcEEEEEecCCcccCHHHHHHHHHHHHHHHHH
Q 026528 173 SQMSSAVSISINRQGHICGMIKRGGVGLDPSVILDMISVANFVSRQ 218 (237)
Q Consensus 173 ~~~~~~l~i~~~~~g~i~~i~~~G~~~i~~~~l~~~i~~a~~~~~~ 218 (237)
....+.++|.++.++++..+...-..-=+.+.|..++-.|...+.+
T Consensus 34 ~sggG~V~Vt~~G~~ev~~i~Idp~~~eD~E~LeDLI~aA~ndA~~ 79 (99)
T 3f42_A 34 KSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDGYK 79 (99)
T ss_dssp EEGGGTEEEEEETTSCEEEEEECGGGGGCHHHHHHHHHHHHHHHHH
T ss_pred EECCCEEEEEEecCceEEEEEECHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999876532212566666666666555443
No 37
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=25.26 E-value=54 Score=19.33 Aligned_cols=32 Identities=13% Similarity=-0.029 Sum_probs=25.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 199 GLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 199 ~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
.++.+.+.++-.+|.+......++++++|.+.
T Consensus 15 rl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~ 46 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEY 46 (55)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 47788999999999888888888888877664
No 38
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=22.29 E-value=32 Score=21.28 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=29.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026528 199 GLDPSVILDMISVANFVSRQLMDKLDSEIAAA 230 (237)
Q Consensus 199 ~i~~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 230 (237)
.++++.-.++-..|....+.+.++++++|++.
T Consensus 19 rId~eLH~rlk~~Aa~~g~Sln~~i~eAL~~y 50 (56)
T 2kel_A 19 YMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEY 50 (56)
T ss_dssp EEEHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999876
Done!