Query 026529
Match_columns 237
No_of_seqs 200 out of 1317
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 15:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.7 8.1E-19 2.8E-23 121.5 4.5 88 36-124 3-92 (94)
2 1wd2_A Ariadne-1 protein homol 99.5 1.9E-15 6.4E-20 94.6 0.7 39 196-234 4-47 (60)
3 2ct7_A Ring finger protein 31; 99.4 3.8E-15 1.3E-19 100.8 -3.4 73 107-185 4-80 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.4 7.8E-15 2.7E-19 97.8 -3.0 70 104-178 2-76 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.3 4.8E-13 1.6E-17 98.0 1.3 119 36-211 5-126 (133)
6 3hcs_A TNF receptor-associated 99.1 8.9E-11 3E-15 89.7 5.7 133 35-212 15-151 (170)
7 2ct2_A Tripartite motif protei 98.9 1.4E-09 4.8E-14 73.6 5.3 63 35-104 12-74 (88)
8 1rmd_A RAG1; V(D)J recombinati 98.9 6.5E-09 2.2E-13 74.1 8.7 83 38-144 23-105 (116)
9 1g25_A CDK-activating kinase a 98.9 1.1E-09 3.7E-14 69.9 3.2 59 38-105 3-62 (65)
10 1jm7_A BRCA1, breast cancer ty 98.9 6E-09 2.1E-13 73.7 7.2 72 36-118 19-91 (112)
11 2egp_A Tripartite motif-contai 98.8 8.7E-10 3E-14 73.1 1.8 61 35-102 9-69 (79)
12 2ysl_A Tripartite motif-contai 98.8 2.6E-09 8.9E-14 69.6 3.7 56 35-101 17-72 (73)
13 2ecm_A Ring finger and CHY zin 98.8 3.8E-09 1.3E-13 64.8 4.0 52 36-97 3-54 (55)
14 2ecv_A Tripartite motif-contai 98.8 6.3E-09 2.2E-13 69.7 4.9 60 35-102 16-75 (85)
15 2ecw_A Tripartite motif-contai 98.8 7.4E-09 2.5E-13 69.4 5.2 59 36-102 17-75 (85)
16 1t1h_A Gspef-atpub14, armadill 98.8 8.7E-09 3E-13 68.0 5.3 68 35-115 5-73 (78)
17 3hct_A TNF receptor-associated 98.8 1.7E-08 5.9E-13 72.2 7.1 86 35-145 15-100 (118)
18 2ecy_A TNF receptor-associated 98.8 5.9E-09 2E-13 66.6 4.1 53 36-101 13-65 (66)
19 2djb_A Polycomb group ring fin 98.8 7.1E-09 2.4E-13 67.4 4.5 57 36-105 13-69 (72)
20 3ztg_A E3 ubiquitin-protein li 98.8 4.8E-09 1.7E-13 71.6 3.7 50 35-96 10-60 (92)
21 3ng2_A RNF4, snurf, ring finge 98.8 5.1E-09 1.7E-13 67.8 3.5 60 35-104 7-69 (71)
22 1e4u_A Transcriptional repress 98.7 1.1E-08 3.7E-13 67.5 4.7 57 36-101 9-65 (78)
23 2xeu_A Ring finger protein 4; 98.7 8E-09 2.7E-13 65.3 3.2 58 37-104 2-62 (64)
24 2ysj_A Tripartite motif-contai 98.7 1.5E-08 5.2E-13 64.0 4.3 46 35-89 17-62 (63)
25 3knv_A TNF receptor-associated 98.7 1.7E-09 5.8E-14 79.8 -0.3 88 35-144 28-121 (141)
26 3lrq_A E3 ubiquitin-protein li 98.7 3.5E-08 1.2E-12 68.4 6.2 66 36-114 20-87 (100)
27 2ect_A Ring finger protein 126 98.6 2E-08 6.7E-13 66.3 3.1 57 36-103 13-69 (78)
28 2yur_A Retinoblastoma-binding 98.6 1.9E-08 6.4E-13 65.8 2.8 49 36-96 13-62 (74)
29 2kiz_A E3 ubiquitin-protein li 98.6 5.3E-08 1.8E-12 62.6 4.8 52 36-98 12-63 (69)
30 2d8t_A Dactylidin, ring finger 98.6 1.3E-08 4.6E-13 65.9 1.8 54 36-103 13-66 (71)
31 2ecj_A Tripartite motif-contai 98.6 3.9E-08 1.3E-12 60.9 3.8 46 35-89 12-57 (58)
32 2ea6_A Ring finger protein 4; 98.6 2.7E-08 9.3E-13 63.8 2.9 52 36-97 13-67 (69)
33 2csy_A Zinc finger protein 183 98.6 5.8E-08 2E-12 64.5 4.4 48 36-97 13-60 (81)
34 2ep4_A Ring finger protein 24; 98.6 4.8E-08 1.6E-12 63.7 3.8 51 36-97 13-63 (74)
35 1iym_A EL5; ring-H2 finger, ub 98.5 4.1E-08 1.4E-12 60.1 3.2 52 36-97 3-54 (55)
36 2y43_A E3 ubiquitin-protein li 98.5 5.7E-08 2E-12 67.1 4.1 66 37-115 21-87 (99)
37 3fl2_A E3 ubiquitin-protein li 98.5 5.6E-08 1.9E-12 70.1 3.6 49 37-98 51-99 (124)
38 1x4j_A Ring finger protein 38; 98.5 5.5E-08 1.9E-12 63.6 2.4 52 36-98 21-72 (75)
39 1v87_A Deltex protein 2; ring- 98.5 1.2E-07 4E-12 67.3 4.1 58 35-97 22-93 (114)
40 2yu4_A E3 SUMO-protein ligase 98.4 1.9E-07 6.6E-12 63.9 4.6 60 36-101 5-66 (94)
41 1bor_A Transcription factor PM 98.4 5.1E-08 1.7E-12 60.1 1.1 46 36-98 4-49 (56)
42 2kr4_A Ubiquitin conjugation f 98.4 2.7E-07 9.2E-12 61.9 4.6 53 35-101 11-63 (85)
43 1z6u_A NP95-like ring finger p 98.4 4.3E-07 1.5E-11 67.6 5.8 50 37-99 77-126 (150)
44 2l0b_A E3 ubiquitin-protein li 98.4 1.5E-07 5.2E-12 64.0 3.1 52 36-98 38-89 (91)
45 2ckl_A Polycomb group ring fin 98.4 8.9E-08 3.1E-12 67.2 2.0 50 36-98 13-62 (108)
46 4ayc_A E3 ubiquitin-protein li 98.4 8.6E-08 2.9E-12 70.4 1.7 47 38-98 53-99 (138)
47 1jm7_B BARD1, BRCA1-associated 98.4 8.5E-08 2.9E-12 68.4 1.6 50 36-101 20-70 (117)
48 2ecn_A Ring finger protein 141 98.4 3.1E-08 1.1E-12 63.9 -0.8 51 35-100 12-62 (70)
49 3htk_C E3 SUMO-protein ligase 98.3 3.2E-07 1.1E-11 73.5 3.3 60 34-102 177-236 (267)
50 1chc_A Equine herpes virus-1 r 98.3 4.5E-07 1.5E-11 57.9 3.4 49 36-97 3-51 (68)
51 3l11_A E3 ubiquitin-protein li 98.3 1.8E-07 6.3E-12 66.4 1.6 48 38-98 15-62 (115)
52 1wgm_A Ubiquitin conjugation f 98.3 5.3E-07 1.8E-11 62.1 3.3 52 35-100 19-71 (98)
53 2ecl_A Ring-box protein 2; RNF 98.2 4.5E-07 1.5E-11 60.2 2.0 55 37-101 14-79 (81)
54 2ecg_A Baculoviral IAP repeat- 98.2 8.9E-07 3E-11 57.8 2.9 43 38-98 25-68 (75)
55 2kre_A Ubiquitin conjugation f 98.2 8E-07 2.7E-11 61.4 2.6 52 35-100 26-77 (100)
56 2y1n_A E3 ubiquitin-protein li 98.1 5.2E-06 1.8E-10 70.5 6.9 54 35-101 329-382 (389)
57 2ckl_B Ubiquitin ligase protei 98.1 2.1E-06 7.1E-11 64.9 4.0 48 38-97 54-101 (165)
58 4ic3_A E3 ubiquitin-protein li 98.1 2.5E-07 8.6E-12 60.3 -1.0 43 38-98 24-67 (74)
59 4ap4_A E3 ubiquitin ligase RNF 98.0 2.3E-06 7.8E-11 61.9 2.4 59 35-103 69-130 (133)
60 2c2l_A CHIP, carboxy terminus 97.9 5.2E-06 1.8E-10 67.8 3.4 52 36-100 206-257 (281)
61 2f42_A STIP1 homology and U-bo 97.9 1.3E-05 4.4E-10 61.0 4.5 53 35-100 103-155 (179)
62 2d8s_A Cellular modulator of i 97.8 1.4E-05 4.7E-10 52.7 3.7 54 36-99 13-71 (80)
63 3dpl_R Ring-box protein 1; ubi 97.8 1.9E-05 6.5E-10 55.0 4.5 54 36-99 35-102 (106)
64 2yho_A E3 ubiquitin-protein li 97.7 2.7E-06 9.1E-11 56.1 -1.3 43 38-98 18-61 (79)
65 2ea5_A Cell growth regulator w 97.6 2.7E-05 9.2E-10 49.6 2.6 45 36-98 13-58 (68)
66 2vje_B MDM4 protein; proto-onc 97.6 2.1E-05 7.2E-10 49.3 1.6 48 38-97 7-55 (63)
67 2vje_A E3 ubiquitin-protein li 97.6 2.3E-05 7.7E-10 49.4 1.8 49 37-97 7-56 (64)
68 4a0k_B E3 ubiquitin-protein li 97.3 4.1E-05 1.4E-09 54.2 0.5 52 37-98 47-112 (117)
69 2ct0_A Non-SMC element 1 homol 97.3 0.00029 9.9E-09 45.5 4.1 51 36-97 13-63 (74)
70 3t6p_A Baculoviral IAP repeat- 97.2 3.7E-05 1.3E-09 64.7 -0.6 45 36-98 293-338 (345)
71 3k1l_B Fancl; UBC, ring, RWD, 96.8 0.00094 3.2E-08 55.5 3.7 62 36-99 306-374 (381)
72 2bay_A PRE-mRNA splicing facto 96.5 0.0013 4.6E-08 40.7 2.5 52 38-103 3-55 (61)
73 1wd2_A Ariadne-1 protein homol 96.4 0.0019 6.6E-08 39.8 2.6 40 125-170 4-45 (60)
74 1vyx_A ORF K3, K3RING; zinc-bi 96.0 0.0078 2.7E-07 37.0 3.7 50 36-97 4-58 (60)
75 2ct7_A Ring finger protein 31; 94.9 0.021 7.1E-07 37.8 3.3 36 196-231 23-61 (86)
76 2jmo_A Parkin; IBR, E3 ligase, 94.9 0.011 3.6E-07 38.7 1.7 35 196-230 23-65 (80)
77 3vk6_A E3 ubiquitin-protein li 94.8 0.025 8.4E-07 38.2 3.4 46 40-97 3-48 (101)
78 2jun_A Midline-1; B-BOX, TRIM, 93.1 0.053 1.8E-06 36.7 2.6 26 149-174 69-95 (101)
79 2cs3_A Protein C14ORF4, MY039 92.3 0.23 7.8E-06 31.8 4.5 49 35-90 12-64 (93)
80 2ko5_A Ring finger protein Z; 91.2 0.052 1.8E-06 36.0 0.6 48 36-99 26-74 (99)
81 3nw0_A Non-structural maintena 91.1 0.21 7.2E-06 39.5 4.2 53 36-99 178-230 (238)
82 3j20_Y 30S ribosomal protein S 90.4 0.2 6.7E-06 29.4 2.5 30 196-225 17-47 (50)
83 1weo_A Cellulose synthase, cat 89.8 0.54 1.8E-05 30.8 4.5 59 128-215 17-75 (93)
84 3qt1_I DNA-directed RNA polyme 87.4 0.39 1.3E-05 34.4 2.9 36 124-161 21-56 (133)
85 1pft_A TFIIB, PFTFIIBN; N-term 87.1 0.4 1.4E-05 27.8 2.4 29 197-225 4-34 (50)
86 2k4x_A 30S ribosomal protein S 85.6 0.43 1.5E-05 28.5 2.0 29 197-225 17-46 (55)
87 1z60_A TFIIH basal transcripti 83.1 0.39 1.3E-05 29.1 1.0 36 128-172 16-51 (59)
88 1vq8_Z 50S ribosomal protein L 82.9 0.56 1.9E-05 30.6 1.7 31 196-226 25-56 (83)
89 2ecv_A Tripartite motif-contai 82.5 1.9 6.4E-05 27.4 4.3 54 127-211 19-72 (85)
90 2jr6_A UPF0434 protein NMA0874 81.3 1.3 4.3E-05 27.7 2.9 29 197-225 7-36 (68)
91 1x4j_A Ring finger protein 38; 81.3 0.2 7E-06 31.6 -0.8 33 156-213 43-75 (75)
92 4ayc_A E3 ubiquitin-protein li 81.1 0.47 1.6E-05 33.9 1.0 31 128-170 54-84 (138)
93 3h0g_I DNA-directed RNA polyme 79.6 1 3.5E-05 31.1 2.3 33 127-161 4-36 (113)
94 1twf_I B12.6, DNA-directed RNA 75.9 1.8 6.2E-05 30.3 2.7 30 197-226 3-37 (122)
95 3h0g_I DNA-directed RNA polyme 75.8 2.1 7.3E-05 29.5 3.0 29 197-225 3-36 (113)
96 3qt1_I DNA-directed RNA polyme 75.3 1.5 5.2E-05 31.2 2.2 31 195-225 21-56 (133)
97 1twf_I B12.6, DNA-directed RNA 73.8 1.5 5.1E-05 30.7 1.8 34 126-161 3-36 (122)
98 1weo_A Cellulose synthase, cat 71.3 12 0.00042 24.4 5.5 52 37-97 15-69 (93)
99 3na7_A HP0958; flagellar bioge 70.1 9.7 0.00033 30.1 6.1 60 100-161 168-232 (256)
100 1twf_L ABC10-alpha, DNA-direct 66.6 2.4 8.3E-05 26.5 1.4 24 199-223 29-53 (70)
101 2akl_A PHNA-like protein PA012 65.5 3.8 0.00013 28.8 2.4 29 197-226 26-55 (138)
102 2hf1_A Tetraacyldisaccharide-1 64.8 5.2 0.00018 24.8 2.7 28 198-225 8-36 (68)
103 1dl6_A Transcription factor II 64.4 5.8 0.0002 23.7 2.8 28 197-224 10-39 (58)
104 3iz6_X 40S ribosomal protein S 63.5 4.2 0.00014 26.4 2.2 31 128-163 37-67 (86)
105 2js4_A UPF0434 protein BB2007; 63.3 6.8 0.00023 24.4 3.1 29 197-225 7-36 (70)
106 2pk7_A Uncharacterized protein 62.9 6.4 0.00022 24.5 2.9 28 198-225 8-36 (69)
107 2k5c_A Uncharacterized protein 62.3 2.7 9.3E-05 26.9 1.1 23 84-108 8-31 (95)
108 2jne_A Hypothetical protein YF 61.1 6.2 0.00021 26.3 2.6 23 199-223 33-56 (101)
109 1vq8_Z 50S ribosomal protein L 60.8 4.9 0.00017 26.0 2.1 30 127-162 27-56 (83)
110 2xzm_6 RPS27E; ribosome, trans 60.5 3.5 0.00012 26.4 1.4 31 128-163 33-63 (81)
111 1z2q_A LM5-1; membrane protein 59.1 4.4 0.00015 26.2 1.7 37 36-72 19-55 (84)
112 1wii_A Hypothetical UPF0222 pr 58.8 6.8 0.00023 25.5 2.5 31 197-227 22-59 (85)
113 2jrp_A Putative cytoplasmic pr 58.0 7 0.00024 25.1 2.5 22 199-222 3-25 (81)
114 2yw8_A RUN and FYVE domain-con 57.7 4.7 0.00016 25.9 1.7 37 35-71 16-52 (82)
115 1zbd_B Rabphilin-3A; G protein 56.8 6.2 0.00021 28.0 2.3 35 36-70 53-88 (134)
116 2d8v_A Zinc finger FYVE domain 56.6 2.6 9E-05 25.9 0.3 34 36-74 6-40 (67)
117 3u5c_b RP61, YS20, 40S ribosom 56.2 3.4 0.00012 26.5 0.8 31 128-163 35-65 (82)
118 2akl_A PHNA-like protein PA012 55.4 4 0.00014 28.7 1.0 29 126-161 26-54 (138)
119 3u5c_f 40S ribosomal protein S 55.3 4.9 0.00017 29.2 1.6 33 127-163 118-150 (152)
120 3nw0_A Non-structural maintena 54.5 24 0.00084 27.5 5.6 21 190-210 209-229 (238)
121 2jny_A Uncharacterized BCR; st 54.2 10 0.00035 23.4 2.7 29 197-225 9-38 (67)
122 1wfl_A Zinc finger protein 216 54.0 8.7 0.0003 24.2 2.3 31 198-232 25-55 (74)
123 1wfh_A Zinc finger (AN1-like) 53.7 9 0.00031 23.4 2.3 32 197-232 14-45 (64)
124 1x4u_A Zinc finger, FYVE domai 52.7 5.9 0.0002 25.5 1.5 36 36-71 12-47 (84)
125 1joc_A EEA1, early endosomal a 51.8 5.1 0.00017 28.1 1.2 35 38-72 69-103 (125)
126 3t7l_A Zinc finger FYVE domain 51.8 5.2 0.00018 26.2 1.2 36 38-73 20-55 (90)
127 1fre_A Nuclear factor XNF7; zi 51.6 11 0.00037 20.4 2.3 26 149-174 12-38 (42)
128 1vfy_A Phosphatidylinositol-3- 51.5 5.9 0.0002 24.8 1.3 33 39-71 12-44 (73)
129 3h0g_L DNA-directed RNA polyme 51.4 7.7 0.00026 23.6 1.8 25 199-224 22-47 (63)
130 2hu9_A MERP, mercuric transpor 50.8 6.7 0.00023 27.7 1.6 46 85-142 2-50 (130)
131 2o35_A Hypothetical protein DU 50.7 6.4 0.00022 26.3 1.4 17 63-79 42-58 (105)
132 1qxf_A GR2, 30S ribosomal prot 50.7 9.1 0.00031 23.5 2.0 31 128-163 8-38 (66)
133 3fyb_A Protein of unknown func 50.3 6.5 0.00022 26.2 1.4 17 63-79 41-57 (104)
134 1joc_A EEA1, early endosomal a 48.9 10 0.00036 26.4 2.4 35 126-168 68-102 (125)
135 2kpi_A Uncharacterized protein 48.6 13 0.00046 21.9 2.5 27 197-225 9-38 (56)
136 1wg2_A Zinc finger (AN1-like) 48.1 12 0.00042 22.8 2.3 31 197-231 14-44 (64)
137 2yvr_A Transcription intermedi 47.1 5.7 0.00019 22.5 0.7 26 149-174 16-41 (50)
138 3j20_W 30S ribosomal protein S 46.4 12 0.00042 22.7 2.1 31 128-163 16-46 (63)
139 2apo_B Ribosome biogenesis pro 46.0 19 0.00066 21.6 2.9 36 85-122 19-54 (60)
140 3m7n_A Putative uncharacterize 45.7 11 0.00037 28.1 2.2 23 199-223 141-164 (179)
141 3mjh_B Early endosome antigen 43.6 3.3 0.00011 21.9 -0.7 17 37-53 4-20 (34)
142 1wfp_A Zinc finger (AN1-like) 43.6 16 0.00055 23.0 2.4 32 196-231 23-54 (74)
143 4ayb_P DNA-directed RNA polyme 42.6 13 0.00045 21.1 1.6 30 129-162 5-34 (48)
144 1wep_A PHF8; structural genomi 42.2 38 0.0013 21.2 4.2 63 35-103 9-71 (79)
145 1wfk_A Zinc finger, FYVE domai 42.2 11 0.00037 24.6 1.5 34 38-71 9-42 (88)
146 2kdx_A HYPA, hydrogenase/ureas 41.8 28 0.00097 23.8 3.8 28 125-160 71-99 (119)
147 2vpb_A Hpygo1, pygopus homolog 41.0 20 0.00067 21.8 2.5 37 35-71 5-42 (65)
148 1wff_A Riken cDNA 2810002D23 p 40.7 20 0.00067 23.2 2.5 31 196-229 23-53 (85)
149 3v2d_5 50S ribosomal protein L 38.9 19 0.00067 21.6 2.2 28 122-160 25-52 (60)
150 1y02_A CARP2, FYVE-ring finger 37.9 12 0.00042 26.0 1.3 38 37-74 18-55 (120)
151 3a43_A HYPD, hydrogenase nicke 37.4 22 0.00075 25.2 2.7 36 106-143 40-84 (139)
152 1k81_A EIF-2-beta, probable tr 37.4 20 0.00069 19.0 1.8 26 200-225 2-31 (36)
153 2zjr_Z 50S ribosomal protein L 35.9 25 0.00087 21.0 2.3 28 122-160 25-52 (60)
154 3a1b_A DNA (cytosine-5)-methyl 35.1 23 0.00079 25.9 2.4 56 32-93 73-132 (159)
155 1x4v_A Hypothetical protein LO 34.4 21 0.00073 21.6 1.8 40 127-177 12-51 (63)
156 2yww_A Aspartate carbamoyltran 33.9 19 0.00066 25.9 1.9 33 126-161 104-143 (149)
157 1ee8_A MUTM (FPG) protein; bet 33.1 19 0.00063 28.7 1.8 24 199-222 236-262 (266)
158 2xzf_A Formamidopyrimidine-DNA 33.1 17 0.00057 29.0 1.6 24 199-222 243-269 (271)
159 3u6p_A Formamidopyrimidine-DNA 33.0 17 0.00057 29.1 1.6 24 199-222 246-272 (273)
160 3ddt_A E3 ubiquitin-protein li 32.4 13 0.00046 20.7 0.7 26 149-174 16-42 (48)
161 1k3x_A Endonuclease VIII; hydr 32.4 17 0.0006 28.8 1.6 24 199-222 235-261 (262)
162 2did_A Tripartite motif protei 32.2 15 0.00052 21.0 0.9 26 149-174 17-43 (53)
163 1k82_A Formamidopyrimidine-DNA 32.1 18 0.00061 28.9 1.6 24 199-222 241-267 (268)
164 2csv_A Tripartite motif protei 31.9 13 0.00045 22.9 0.6 27 149-175 27-53 (72)
165 2aus_D NOP10, ribosome biogene 31.1 35 0.0012 20.4 2.4 36 85-122 18-53 (60)
166 2k2d_A Ring finger and CHY zin 30.7 18 0.00061 23.1 1.1 28 127-160 37-64 (79)
167 2yrg_A Tripartite motif-contai 30.7 17 0.00058 21.5 0.9 26 149-174 23-49 (59)
168 2dlq_A GLI-kruppel family memb 30.7 1.1E+02 0.0038 19.8 6.3 93 36-161 5-104 (124)
169 1gh9_A 8.3 kDa protein (gene M 30.5 24 0.00083 22.0 1.7 13 196-209 19-31 (71)
170 1dvp_A HRS, hepatocyte growth 30.2 16 0.00053 28.1 0.9 35 38-72 161-195 (220)
171 6rxn_A Rubredoxin; electron tr 29.5 32 0.0011 19.4 1.9 31 128-160 5-39 (46)
172 2dja_A Midline-2; tripartite m 29.5 16 0.00054 23.1 0.7 27 149-175 28-55 (84)
173 1lv3_A Hypothetical protein YA 28.6 14 0.00047 22.9 0.3 14 196-209 7-20 (68)
174 1wfe_A Riken cDNA 2310008M20 p 28.5 44 0.0015 21.6 2.7 33 127-168 25-57 (86)
175 4fyy_B Aspartate carbamoyltran 28.2 25 0.00084 25.5 1.6 36 126-161 105-145 (153)
176 2d8u_A Ubiquitin ligase TRIM63 27.8 20 0.00068 21.3 0.9 26 149-174 18-44 (64)
177 2i5o_A DNA polymerase ETA; zin 27.7 22 0.00076 19.3 1.0 16 195-210 6-21 (39)
178 3vth_A Hydrogenase maturation 27.5 41 0.0014 31.1 3.3 59 36-96 109-193 (761)
179 3zyq_A Hepatocyte growth facto 27.4 19 0.00064 27.9 0.9 34 39-72 165-198 (226)
180 4esj_A Type-2 restriction enzy 26.9 7.8 0.00027 30.3 -1.3 34 127-164 34-69 (257)
181 1wil_A KIAA1045 protein; ring 26.8 1.3E+02 0.0045 19.4 4.7 54 37-94 14-75 (89)
182 2jvx_A NF-kappa-B essential mo 26.2 12 0.00041 18.8 -0.3 16 37-52 2-17 (28)
183 2be7_D Aspartate carbamoyltran 26.1 29 0.00098 25.2 1.6 34 126-161 104-144 (153)
184 2fiy_A Protein FDHE homolog; F 25.9 37 0.0012 27.7 2.4 30 199-228 183-221 (309)
185 2xzm_9 RPS31E; ribosome, trans 25.8 26 0.00088 26.4 1.4 29 197-226 112-142 (189)
186 3ql9_A Transcriptional regulat 25.7 65 0.0022 22.5 3.4 37 33-73 52-88 (129)
187 1vk6_A NADH pyrophosphatase; 1 25.7 52 0.0018 26.1 3.3 27 197-223 106-133 (269)
188 1we9_A PHD finger family prote 25.4 25 0.00085 21.0 1.0 35 36-70 4-38 (64)
189 2jx1_A Myelin transcription fa 25.4 31 0.0011 17.7 1.2 11 85-95 2-12 (31)
190 3vhs_A ATPase wrnip1; zinc fin 25.3 5.3 0.00018 19.4 -1.6 20 82-103 4-23 (29)
191 2k5r_A Uncharacterized protein 24.5 1.3E+02 0.0046 19.8 4.6 14 83-98 7-20 (97)
192 2yrc_A Protein transport prote 24.2 52 0.0018 19.5 2.3 35 126-160 8-42 (59)
193 1zvf_A 3-hydroxyanthranilate 3 24.0 14 0.00049 27.4 -0.3 49 158-209 123-172 (176)
194 3pwf_A Rubrerythrin; non heme 23.9 64 0.0022 23.6 3.3 22 129-159 140-161 (170)
195 2f9y_B Acetyl-coenzyme A carbo 23.9 19 0.00064 29.3 0.3 31 195-225 21-53 (304)
196 1wys_A Riken cDNA 2310008M20 p 23.8 54 0.0019 20.6 2.4 43 128-181 15-57 (75)
197 2gmg_A Hypothetical protein PF 23.7 30 0.001 23.3 1.3 14 94-107 23-36 (105)
198 1ef4_A Subunit N, DNA-directed 23.7 71 0.0024 18.7 2.7 13 83-97 2-14 (55)
199 2ri7_A Nucleosome-remodeling f 23.4 19 0.00065 26.4 0.3 77 36-118 6-82 (174)
200 1yfu_A 3-hydroxyanthranilate-3 23.3 14 0.00048 27.4 -0.5 49 158-209 121-170 (174)
201 2kvh_A Zinc finger and BTB dom 23.3 27 0.00092 15.6 0.8 10 152-161 4-13 (27)
202 1qyp_A RNA polymerase II; tran 23.0 36 0.0012 19.8 1.4 33 127-161 15-53 (57)
203 2xb1_A Pygopus homolog 2, B-ce 22.2 33 0.0011 23.0 1.2 55 37-94 2-60 (105)
204 2e72_A POGO transposable eleme 22.1 34 0.0012 19.5 1.1 15 196-210 10-24 (49)
205 2pv0_B DNA (cytosine-5)-methyl 22.0 53 0.0018 27.7 2.7 36 34-73 89-126 (386)
206 3lqh_A Histone-lysine N-methyl 21.9 11 0.00036 28.4 -1.4 75 39-116 3-83 (183)
207 4g9i_A Hydrogenase maturation 21.4 91 0.0031 28.9 4.4 61 35-97 103-189 (772)
208 1ard_A Yeast transcription fac 21.3 30 0.001 15.5 0.7 10 152-161 3-12 (29)
209 1pg5_B Aspartate carbamoyltran 21.3 43 0.0015 24.6 1.8 10 126-135 113-122 (168)
210 2kvf_A Zinc finger and BTB dom 21.1 31 0.0011 15.4 0.8 10 152-161 4-13 (28)
211 1znf_A 31ST zinc finger from X 20.9 31 0.0011 15.2 0.7 9 153-161 3-11 (27)
212 2lbm_A Transcriptional regulat 20.3 1.4E+02 0.0049 21.1 4.3 54 34-94 59-116 (142)
213 3v43_A Histone acetyltransfera 20.3 1.1E+02 0.0038 20.4 3.7 53 36-93 3-62 (112)
214 2lvu_A Zinc finger and BTB dom 25.6 22 0.00074 15.8 0.0 11 152-162 3-13 (26)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.74 E-value=8.1e-19 Score=121.53 Aligned_cols=88 Identities=18% Similarity=0.461 Sum_probs=76.8
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCC--CCccccccCCChhHHHHH
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQF--LDPLACKPTIPSSLFIKW 113 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~--~~~~~i~~~l~~~~~~~~ 113 (237)
...++|+||++++..++ ++.+.+|+|.||++||+.|++.++.+|...+++||.++|+.. ++++.++.+|+++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~-~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQ-MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGG-EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCccccccc-ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 45789999999986544 334458999999999999999999886667899999999999 999999999999999999
Q ss_pred HHHHHHHhhcC
Q 026529 114 CDHLCEDYVLG 124 (237)
Q Consensus 114 ~~~~~~~~~~~ 124 (237)
.+++.+.+++.
T Consensus 82 ~~~~~~~~v~~ 92 (94)
T 1wim_A 82 KKLQFERSGPS 92 (94)
T ss_dssp HHHHHHSSCSS
T ss_pred HHHHHHhhhcc
Confidence 99999888754
No 2
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.51 E-value=1.9e-15 Score=94.59 Aligned_cols=39 Identities=36% Similarity=0.748 Sum_probs=34.4
Q ss_pred CCcccCCCCCcceeccCCCCceeec---Cc--cEEEecccCCCC
Q 026529 196 MNWTRCPGCGNCIERKKGCRIMFCR---FI--FLSLCLCIFSNR 234 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~---C~--~cf~c~~~~~~~ 234 (237)
.++|+||+|+++|||++|||||+|+ |+ |||.|+..|++|
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 5789999999999999999999997 97 777777788765
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.41 E-value=3.8e-15 Score=100.82 Aligned_cols=73 Identities=32% Similarity=0.638 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHhhc-CCCcccCCCCCCCceeeccccccCCcCcccCccccccccccccccc---CCCCCChhhhhcc
Q 026529 107 SSLFIKWCDHLCEDYVL-GLERSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCFQCKLAW---HAGYRCEESGNLR 182 (237)
Q Consensus 107 ~~~~~~~~~~~~~~~~~-~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~---H~~~~C~~~~~~~ 182 (237)
++++++|.+++.+.+|. +++++||| +|+..+..... ...+.|+.|++.||+.|+.+| |.+.+|.++++|.
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~----~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~ 77 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE----QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWK 77 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS----CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC----CCceEeCCCCCccccccCCchhhcCCCCChHHHHHHH
Confidence 45677888888888884 56688999 99998877653 467999999999999999999 9999999999987
Q ss_pred ccc
Q 026529 183 DRN 185 (237)
Q Consensus 183 ~~~ 185 (237)
..+
T Consensus 78 ~~n 80 (86)
T 2ct7_A 78 RMN 80 (86)
T ss_dssp HHH
T ss_pred HhC
Confidence 653
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.39 E-value=7.8e-15 Score=97.78 Aligned_cols=70 Identities=26% Similarity=0.539 Sum_probs=61.5
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCcccCCCCCCCceeeccccccCCcCcccCc-----ccccccccccccccCCCCCChhh
Q 026529 104 TIPSSLFIKWCDHLCEDYVLGLERSYCPNRNCMAVMVNECEEIGRVKKAQCP-----KCKQWFCFQCKLAWHAGYRCEES 178 (237)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~-----~C~~~~C~~C~~~~H~~~~C~~~ 178 (237)
+|+++++++|++++.+.++.....+|||.|+|+..+..+.. ...+.|+ .|++.||+.|+.+||. .+|.+.
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~~----~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPD----QRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCSC----TTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECCC----CCcCCCCCCCCCCCCCeeccccCccccC-Cccccc
Confidence 57788899999999999887666999999999999987753 4779998 9999999999999999 999763
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.29 E-value=4.8e-13 Score=97.96 Aligned_cols=119 Identities=25% Similarity=0.561 Sum_probs=82.8
Q ss_pred CCCcccccccccCCCC---ccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccCCChhHHHH
Q 026529 36 DGTFTCDICIEPMSVN---NKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPTIPSSLFIK 112 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~ 112 (237)
...++|+||++.+..+ ....+.++|||.||.+|+..|+... ..||. |+..+....+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~l~~l~i------ 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPIYI------ 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--------SBCTT--TCCBCTTTCEEECBC------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--------CCCCC--CCCcCcccccccccc------
Confidence 5678999999998543 1222578999999999999998742 38999 999888766654321
Q ss_pred HHHHHHHHhhcCCCcccCCCCCCCceeeccccccCCcCcccCcccccccccccccccCCCCCChhhhhccccchHHHHHH
Q 026529 113 WCDHLCEDYVLGLERSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCFQCKLAWHAGYRCEESGNLRDRNDIAFGKL 192 (237)
Q Consensus 113 ~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~ 192 (237)
..+...|+ -|...+...... ........||+.||..|-..|.
T Consensus 69 -----------~~~~~~C~--iC~~~~~~~~~~---~~~~~~~~CgH~fc~~Ci~~~~---------------------- 110 (133)
T 4ap4_A 69 -----------GSGTVSCP--ICMDGYSEIVQN---GRLIVSTECGHVFCSQCLRDSL---------------------- 110 (133)
T ss_dssp -----------SSSSCBCT--TTCCBHHHHHHT---TCCEEEETTSBEEEHHHHHHHH----------------------
T ss_pred -----------CCCCCCCC--CCCCcccccccc---CcceEeCCCCChhhHHHHHHHH----------------------
Confidence 13456788 787665443221 1233445799999999875543
Q ss_pred HHhCCcccCCCCCcceecc
Q 026529 193 LEKMNWTRCPGCGNCIERK 211 (237)
Q Consensus 193 ~~~~~~k~CP~C~~~iek~ 211 (237)
.. .+.||.|+..|.++
T Consensus 111 -~~--~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 111 -KN--ANTCPTCRKKINHK 126 (133)
T ss_dssp -HH--CSBCTTTCCBCCGG
T ss_pred -Hc--CCCCCCCCCcCChh
Confidence 11 26999999999875
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.10 E-value=8.9e-11 Score=89.65 Aligned_cols=133 Identities=22% Similarity=0.462 Sum_probs=83.5
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccCCChhHHHHHH
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPTIPSSLFIKWC 114 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~ 114 (237)
....+.|+||++.+..+ +.++|||.||..|+..|+.... ..||. |+..+....+.. ...+++
T Consensus 15 ~~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~~~~---~~~~~~-- 76 (170)
T 3hcs_A 15 LESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQLFP---DNFAKR-- 76 (170)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGGCEE---CHHHHH--
T ss_pred CCCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCC-------CCCCC--CccCcchhhhhh---hHHHHH--
Confidence 45678999999998654 3579999999999999997531 38998 998887654332 222211
Q ss_pred HHHHHHhhcCCCcccCCCCCCCceeeccccccC----CcCcccCcccccccccccccccCCCCCChhhhhccccchHHHH
Q 026529 115 DHLCEDYVLGLERSYCPNRNCMAVMVNECEEIG----RVKKAQCPKCKQWFCFQCKLAWHAGYRCEESGNLRDRNDIAFG 190 (237)
Q Consensus 115 ~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~----~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~ 190 (237)
.+. .-.++||+.+|+..+........ ....+.|+.|+..+ ......+|....|.
T Consensus 77 ------~i~-~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~-------------- 134 (170)
T 3hcs_A 77 ------EIL-SLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCP-------------- 134 (170)
T ss_dssp ------HHH-TSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCT--------------
T ss_pred ------HHh-hcccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCC--------------
Confidence 111 23589999999998887664310 12344555555544 22222333322232
Q ss_pred HHHHhCCcccCCCCCcceeccC
Q 026529 191 KLLEKMNWTRCPGCGNCIERKK 212 (237)
Q Consensus 191 ~~~~~~~~k~CP~C~~~iek~~ 212 (237)
.....||.|+..+....
T Consensus 135 -----~r~~~C~~C~~~~~~~~ 151 (170)
T 3hcs_A 135 -----RRQVSCDNCAASMAFED 151 (170)
T ss_dssp -----TCEEECTTTCCEEEGGG
T ss_pred -----CCCeECCCCCCccCHHH
Confidence 34467999988877653
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1.4e-09 Score=73.58 Aligned_cols=63 Identities=19% Similarity=0.504 Sum_probs=48.5
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccC
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPT 104 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~ 104 (237)
....++|+||++.+...+.....++|||.||..|+..|+... ...+.||. |+..+....+..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----INGVRCPF--CSKITRITSLTQL 74 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----SSCBCCTT--TCCCBCCSSTTTS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----CCCcCCCC--CCCcccchhHHHH
Confidence 345689999999996543323577999999999999999864 23579999 9998877666544
No 8
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.90 E-value=6.5e-09 Score=74.11 Aligned_cols=83 Identities=23% Similarity=0.482 Sum_probs=59.5
Q ss_pred CcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccCCChhHHHHHHHHH
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPTIPSSLFIKWCDHL 117 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~~~~ 117 (237)
.+.|+||++.+..+ +.++|||.||..|+..|+... ...||. |+..+...++...+ .. +.+.+
T Consensus 23 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~-~~----l~~~i 84 (116)
T 1rmd_A 23 SISCQICEHILADP----VETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPV-KS----FLNIL 84 (116)
T ss_dssp HTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCC-HH----HHHHH
T ss_pred CCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccH-HH----HHHHH
Confidence 46899999998543 357999999999999999852 347998 99988877665431 11 11111
Q ss_pred HHHhhcCCCcccCCCCCCCceeecccc
Q 026529 118 CEDYVLGLERSYCPNRNCMAVMVNECE 144 (237)
Q Consensus 118 ~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 144 (237)
. .-.++||+.+|+..+.....
T Consensus 85 ~------~l~v~C~~~gC~~~~~~~~~ 105 (116)
T 1rmd_A 85 N------SLMVKCPAQDCNEEVSLEKY 105 (116)
T ss_dssp H------HCEEECCSTTCCCEEEHHHH
T ss_pred H------HhcCCCCCCCCcchhhHhHH
Confidence 1 12478999999988876654
No 9
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.87 E-value=1.1e-09 Score=69.86 Aligned_cols=59 Identities=19% Similarity=0.386 Sum_probs=44.5
Q ss_pred Ccccccccc-cCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccCC
Q 026529 38 TFTCDICIE-PMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPTI 105 (237)
Q Consensus 38 ~~~C~IC~~-~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~l 105 (237)
...|+||++ .+..+.....+++|||.||..|+.+|+.. ....||. |+..+...+++..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-------GAGNCPE--CGTPLRKSNFRVQL 62 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-------TSSSCTT--TCCCCSSCCCEEEC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-------CCCcCCC--CCCccccccceeec
Confidence 568999999 56444332235799999999999999863 1468998 99998887776543
No 10
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=6e-09 Score=73.72 Aligned_cols=72 Identities=24% Similarity=0.519 Sum_probs=52.7
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccC-CChhHHHHHH
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPT-IPSSLFIKWC 114 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~-l~~~~~~~~~ 114 (237)
...+.|+||++.+..+ +.++|||.||..|+..|+... ...+.||. |+..+....+... ...++.+.+.
T Consensus 19 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 19 QKILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQK-----KGPSQCPL--CKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSS-----SSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cCCCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhC-----CCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHH
Confidence 3456999999988543 357999999999999999853 23478999 9998887766543 3345666665
Q ss_pred HHHH
Q 026529 115 DHLC 118 (237)
Q Consensus 115 ~~~~ 118 (237)
+.+.
T Consensus 88 ~~~~ 91 (112)
T 1jm7_A 88 KIIC 91 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.83 E-value=8.7e-10 Score=73.05 Aligned_cols=61 Identities=23% Similarity=0.446 Sum_probs=47.4
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccc
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACK 102 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~ 102 (237)
....+.|+||++.+..+ +.++|||.||..|+..|+...... ......||. |+..+...++.
T Consensus 9 ~~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~-~~~~~~CP~--Cr~~~~~~~l~ 69 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTS-MGGKSSCPV--CGISYSFEHLQ 69 (79)
T ss_dssp CCCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSS-CCCCCCCSS--SCCCCCSSGGG
T ss_pred cccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccC-CCCCCcCCC--CCCcCCHhhCC
Confidence 35578999999998643 357999999999999998865443 245689999 99988765554
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.6e-09 Score=69.62 Aligned_cols=56 Identities=23% Similarity=0.544 Sum_probs=44.2
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccc
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLAC 101 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i 101 (237)
....+.|+||++.+..+ +.++|||.||..|+..|+.. ......||. |+..+..+++
T Consensus 17 ~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~--Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGET-----SCGFFKCPL--CKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSE----EECTTCCEEEHHHHHHHCSS-----SCSCCCCSS--SCCCCCCCCC
T ss_pred CccCCEeccCCcccCCe----EEcCCCChhhHHHHHHHHHc-----CCCCCCCCC--CCCcCCcccC
Confidence 35578999999998543 35699999999999999872 234679999 9998877654
No 13
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.80 E-value=3.8e-09 Score=64.84 Aligned_cols=52 Identities=21% Similarity=0.510 Sum_probs=41.3
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
.....|+||++.+...+..+..++|+|.||.+|+..|+... ..||. |+..++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcCC
Confidence 45678999999985544444678999999999999999853 67998 987654
No 14
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=6.3e-09 Score=69.70 Aligned_cols=60 Identities=27% Similarity=0.594 Sum_probs=47.2
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccc
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACK 102 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~ 102 (237)
....+.|+||++.+..+ +.++|+|.||..|+..|+..+... ...+.||. |+..+...++.
T Consensus 16 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~--~~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLD--KGESSCPV--CRISYQPENIR 75 (85)
T ss_dssp CCCCCCCTTTCSCCSSC----BCCSSSCCBCTTHHHHHHHHHHHT--TSCCCCTT--TCCSSCSSSCC
T ss_pred ccCCCCCCCCCcccCCc----eeCCCCCHHHHHHHHHHHHHhhcC--CCCCcCCC--CCCccCHHhcC
Confidence 34568999999998543 357999999999999999876544 23689999 99888766554
No 15
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.78 E-value=7.4e-09 Score=69.36 Aligned_cols=59 Identities=27% Similarity=0.505 Sum_probs=46.4
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACK 102 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~ 102 (237)
...+.|+||++.+..+ +.++|+|.||..|+..|+...... .....||. |+..+..+.+.
T Consensus 17 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~--~~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNT--DGKGNCPV--CRVPYPFGNLK 75 (85)
T ss_dssp CTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCT--TSCBCCTT--TCCCCCTTCCE
T ss_pred ccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCC--CCCCCCCC--CCCcCCHHhCC
Confidence 4567999999998653 357899999999999999876532 34689998 99988766544
No 16
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.77 E-value=8.7e-09 Score=68.03 Aligned_cols=68 Identities=19% Similarity=0.376 Sum_probs=49.9
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccc-cCCChhHHHHH
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACK-PTIPSSLFIKW 113 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~-~~l~~~~~~~~ 113 (237)
....+.|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+....+. +..-.++++.|
T Consensus 5 ~~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~-------~~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDA-------GHKTCPK--SQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp CSSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTT-------TCCBCTT--TCCBCSSCCCEECTTTHHHHHHH
T ss_pred CcccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHH-------CcCCCCC--CcCCCChhhCccCHHHHHHHHHH
Confidence 35678999999998653 35699999999999999973 1468999 99988765543 34444555555
Q ss_pred HH
Q 026529 114 CD 115 (237)
Q Consensus 114 ~~ 115 (237)
.+
T Consensus 72 ~~ 73 (78)
T 1t1h_A 72 CE 73 (78)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 17
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.77 E-value=1.7e-08 Score=72.16 Aligned_cols=86 Identities=24% Similarity=0.495 Sum_probs=60.7
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccCCChhHHHHHH
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPTIPSSLFIKWC 114 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~ 114 (237)
....+.|+||++.+..+ +.++|||.||..|+..|+... ...||. |+..+....+. ....+++
T Consensus 15 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~---~~~~l~~-- 76 (118)
T 3hct_A 15 LESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDA-------GHKCPV--DNEILLENQLF---PDNFAKR-- 76 (118)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHH-------CSBCTT--TCCBCCGGGCE---ECHHHHH--
T ss_pred CCCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhC-------CCCCCC--CCCCcCHHhcc---cCHHHHH--
Confidence 35567999999998643 356999999999999999753 128998 99888765433 2222211
Q ss_pred HHHHHHhhcCCCcccCCCCCCCceeeccccc
Q 026529 115 DHLCEDYVLGLERSYCPNRNCMAVMVNECEE 145 (237)
Q Consensus 115 ~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~ 145 (237)
.+. .-.++||+.+|...+......
T Consensus 77 ------~i~-~l~v~C~n~gC~~~~~~~~l~ 100 (118)
T 3hct_A 77 ------EIL-SLMVKCPNEGCLHKMELRHLE 100 (118)
T ss_dssp ------HHH-TSEEECSSTTCCCEEEGGGSG
T ss_pred ------HHc-cceeECCCCCCCCEEeeHHHH
Confidence 111 235899999999988877654
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=5.9e-09 Score=66.57 Aligned_cols=53 Identities=19% Similarity=0.599 Sum_probs=42.1
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLAC 101 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i 101 (237)
...+.|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+..+++
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLSS-------SSPKCTA--CQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHTT-------SSCCCTT--TCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHHh-------CcCCCCC--CCcCCChhhc
Confidence 5578999999998643 35799999999999999961 2457999 9988776544
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=7.1e-09 Score=67.41 Aligned_cols=57 Identities=19% Similarity=0.438 Sum_probs=44.5
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccCC
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPTI 105 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~l 105 (237)
...+.|+||++.+..+ +.+.+|+|.||..|+..|+.. ...||. |+..+...++...+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQTQPLSGP 69 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSSCSCCCC
T ss_pred CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCcccccccC
Confidence 4567999999998543 224599999999999999974 258998 99988877665544
No 20
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.75 E-value=4.8e-09 Score=71.57 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=40.1
Q ss_pred CCCCcccccccccCCCCccccccCC-CCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCC
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNL-CTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFL 96 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~ 96 (237)
....+.|+||++.+..+ ++++ |||.||..|+..|+... ....||. |+..+
T Consensus 10 ~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHC------TTCCCTT--TCCSS
T ss_pred CCcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhc------CCCcCcC--CCCcC
Confidence 35678999999998654 3567 99999999999999742 2478999 99876
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.75 E-value=5.1e-09 Score=67.79 Aligned_cols=60 Identities=25% Similarity=0.625 Sum_probs=46.2
Q ss_pred CCCCcccccccccCCCC---ccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccC
Q 026529 35 IDGTFTCDICIEPMSVN---NKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPT 104 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~ 104 (237)
......|+||++.+..+ ......++|||.||..|+..|+... ..||. |+..+...++..+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChhheeec
Confidence 35578999999998543 1222578999999999999999742 48999 9998887776654
No 22
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.73 E-value=1.1e-08 Score=67.55 Aligned_cols=57 Identities=18% Similarity=0.447 Sum_probs=41.4
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLAC 101 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i 101 (237)
...++|+||++.+...+..+..++|||.||..|+.+++.. ....||. |+..+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~--CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------ENGLCPA--CRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTT--TCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------CCCCCCC--CCCccCCCch
Confidence 4567999999988543322222359999999999988753 2468999 9988776544
No 23
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.70 E-value=8e-09 Score=65.35 Aligned_cols=58 Identities=22% Similarity=0.606 Sum_probs=44.7
Q ss_pred CCcccccccccCCCC---ccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccC
Q 026529 37 GTFTCDICIEPMSVN---NKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPT 104 (237)
Q Consensus 37 ~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~ 104 (237)
...+|+||++.+..+ ...+..++|||.||.+|+..|+.. ...||. |+..+...++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCccceeee
Confidence 457899999998542 122246899999999999999975 248998 9998887776654
No 24
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.5e-08 Score=63.95 Aligned_cols=46 Identities=24% Similarity=0.590 Sum_probs=36.1
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCC
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPG 89 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 89 (237)
....+.|+||++.+..+ +.++|||.||..|+.+|++.. .....||.
T Consensus 17 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~ 62 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETS-----CGFFKCPL 62 (63)
T ss_dssp CCCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHC-----SSCCCCSC
T ss_pred CccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcC-----CCCCcCcC
Confidence 35578999999998643 356999999999999999851 23567886
No 25
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.69 E-value=1.7e-09 Score=79.84 Aligned_cols=88 Identities=16% Similarity=0.308 Sum_probs=59.4
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccccc------CCChh
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKP------TIPSS 108 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~------~l~~~ 108 (237)
....+.|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+....... ++.+.
T Consensus 28 l~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d~ 94 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSS-------GPQNCAA--CVHEGIYEEGISILESSSAFPDN 94 (141)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGG-------SCEECHH--HHHTTCCCTTTTEECGGGCEECH
T ss_pred CCcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhc-------CCCCCCC--CCCcccccccccccchhhhcccH
Confidence 46678999999998654 35799999999999999862 2358998 987654433222 22222
Q ss_pred HHHHHHHHHHHHhhcCCCcccCCCCCCCceeecccc
Q 026529 109 LFIKWCDHLCEDYVLGLERSYCPNRNCMAVMVNECE 144 (237)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 144 (237)
.+++ .+. .-.++||+.+|...+.....
T Consensus 95 ~~~~--------~i~-~L~v~Cpn~GC~~~~~l~~l 121 (141)
T 3knv_A 95 AARR--------EVE-SLPAVCPSDGCTWKGTLKEY 121 (141)
T ss_dssp HHHH--------HHH-TSEEECCSTTCCCEEEHHHH
T ss_pred HHHH--------HHc-ccccccCCCCCCCEeEHHHH
Confidence 2221 111 23589999999988876654
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.68 E-value=3.5e-08 Score=68.42 Aligned_cols=66 Identities=18% Similarity=0.406 Sum_probs=48.6
Q ss_pred CCCcccccccccCCCCcccccc-CCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccCCC-hhHHHHH
Q 026529 36 DGTFTCDICIEPMSVNNKFKNN-NLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPTIP-SSLFIKW 113 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~-~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~l~-~~~~~~~ 113 (237)
...+.|+||++.+..+ +. ++|||.||..|+..|+... ...||. |+..+....+..... .++.+.+
T Consensus 20 ~~~~~C~IC~~~~~~p----~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA----RLCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCEECTTHHHHHHHH
T ss_pred CCCCCCccCCccccCc----cccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHHhHhhHHHHHHHHHH
Confidence 4467999999998543 34 8999999999999999853 168999 999988776654432 3344444
Q ss_pred H
Q 026529 114 C 114 (237)
Q Consensus 114 ~ 114 (237)
.
T Consensus 87 ~ 87 (100)
T 3lrq_A 87 D 87 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.61 E-value=2e-08 Score=66.31 Aligned_cols=57 Identities=21% Similarity=0.543 Sum_probs=44.3
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccccc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKP 103 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~ 103 (237)
.....|+||++.+...... ..++|+|.||..|+..|+... ..||. |+..+....+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~ 69 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESV-RQLPCNHLFHDSCIVPWLEQH--------DSCPV--CRKSLTGQNTAT 69 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCE-EECTTSCEEETTTTHHHHTTT--------CSCTT--TCCCCCCSCSCC
T ss_pred CCCCCCeeCCccccCCCCE-EEeCCCCeecHHHHHHHHHcC--------CcCcC--cCCccCCcccCC
Confidence 4567999999998655443 457899999999999998632 47999 998887665543
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.60 E-value=1.9e-08 Score=65.76 Aligned_cols=49 Identities=22% Similarity=0.523 Sum_probs=39.0
Q ss_pred CCCcccccccccCCCCccccccCC-CCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCC
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNL-CTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFL 96 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~ 96 (237)
...+.|+||++.+..+ +.++ |+|.||..|+..|+... ....||. |+..+
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 62 (74)
T ss_dssp CGGGSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHHS------SSSCCSS--SCCSS
T ss_pred CCCCCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHhc------CCCcCCC--CCCcC
Confidence 4567999999998643 3567 99999999999999852 2468999 99853
No 29
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.59 E-value=5.3e-08 Score=62.59 Aligned_cols=52 Identities=23% Similarity=0.568 Sum_probs=40.4
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
.....|+||++.+...+.. ..++|+|.||..|+..|+... ..||. |+..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDV-RRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCE-EECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSCS
T ss_pred CCCCCCeeCCccccCCCcE-EEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCccccC
Confidence 4567899999998554443 468999999999999999752 25998 9976654
No 30
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.3e-08 Score=65.89 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=42.9
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccccc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKP 103 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~ 103 (237)
...+.|+||++.+..+ +.++|+|.||..|+..|+... ..||. |+..+....+..
T Consensus 13 ~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASWLG--------KRCAL--CRQEIPEDFLDS 66 (71)
T ss_dssp SSCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTTCS--------SBCSS--SCCBCCHHHHSC
T ss_pred CCCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHHCC--------CcCcC--cCchhCHhhccC
Confidence 4567899999998543 356899999999999998632 58999 999888776654
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=3.9e-08 Score=60.88 Aligned_cols=46 Identities=24% Similarity=0.618 Sum_probs=35.5
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCC
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPG 89 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 89 (237)
....+.|+||++.+..+ +.++|+|.||..|+..|+... .....||.
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~ 57 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDL-----ERDFPCPV 57 (58)
T ss_dssp SCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSS-----CCSCCCSC
T ss_pred cccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhc-----CCCCCCCC
Confidence 34568999999998653 357999999999999998641 23467886
No 32
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.7e-08 Score=63.84 Aligned_cols=52 Identities=27% Similarity=0.717 Sum_probs=40.2
Q ss_pred CCCcccccccccCCCC---ccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 36 DGTFTCDICIEPMSVN---NKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
.....|+||++.+..+ ...++.++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccC
Confidence 5567999999998543 122247899999999999999974 247998 988765
No 33
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=5.8e-08 Score=64.51 Aligned_cols=48 Identities=25% Similarity=0.555 Sum_probs=39.6
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
...+.|+||++.+..+ ++++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 4568999999998543 36899999999999999974 347999 998875
No 34
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.8e-08 Score=63.70 Aligned_cols=51 Identities=25% Similarity=0.613 Sum_probs=40.3
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
.....|+||++.+...... ..++|+|.||..|+..|+... ..||. |+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCE-EEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred CCCCCCcCCCcccCCCCcE-EEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 4567999999998665443 356899999999999999752 27999 997654
No 35
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.55 E-value=4.1e-08 Score=60.12 Aligned_cols=52 Identities=19% Similarity=0.538 Sum_probs=38.8
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
....+|+||++++...+....+..|+|.||.+|+..|+.. ...||. |+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEeE
Confidence 3467899999999765544333349999999999999853 237998 987653
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.54 E-value=5.7e-08 Score=67.11 Aligned_cols=66 Identities=24% Similarity=0.507 Sum_probs=46.0
Q ss_pred CCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccc-cCCChhHHHHHHH
Q 026529 37 GTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACK-PTIPSSLFIKWCD 115 (237)
Q Consensus 37 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~-~~l~~~~~~~~~~ 115 (237)
..+.|+||++.+..+ +.+.+|||.||..|+..|+.. ...||. |+..+....+. +..-.++++.|.+
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCChhhCCcCHHHHHHHHHHHH
Confidence 356899999998643 123489999999999999973 258998 99988765443 2222344444443
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.52 E-value=5.6e-08 Score=70.05 Aligned_cols=49 Identities=29% Similarity=0.657 Sum_probs=39.7
Q ss_pred CCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 37 GTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 37 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
..+.|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+..
T Consensus 51 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 346899999998643 35799999999999999982 2358999 9988765
No 38
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=5.5e-08 Score=63.61 Aligned_cols=52 Identities=21% Similarity=0.542 Sum_probs=41.1
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
.....|+||++++...+.+ ..++|+|.||..|+..|+... ..||. |+..+.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEE-EEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCCC
T ss_pred CCCCCCeECCcccCCCCeE-EEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCCC
Confidence 4457899999998665543 467899999999999998742 37999 9987654
No 39
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.46 E-value=1.2e-07 Score=67.26 Aligned_cols=58 Identities=21% Similarity=0.498 Sum_probs=42.1
Q ss_pred CCCCcccccccccCCCCc--------------cccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 35 IDGTFTCDICIEPMSVNN--------------KFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~--------------~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
......|+||++++..+. ....+++|+|.||..||..|+...-. .....||. |+..+.
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~---~~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK---DGSLQCPS--CKTIYG 93 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC---SSCCBCTT--TCCBSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC---CCCCcCCC--CCCccC
Confidence 345579999999985432 22236899999999999999964321 23568999 997664
No 40
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=1.9e-07 Score=63.86 Aligned_cols=60 Identities=27% Similarity=0.537 Sum_probs=45.8
Q ss_pred CCCcccccccccCCCCccccccC-CCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCC-CCcccc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNN-LCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQF-LDPLAC 101 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~-~~~~~i 101 (237)
...+.|+||++.+.++ +.+ .|||.||+.||..|+...-. ......||..+|... +...++
T Consensus 5 ~~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHccC--cCCCCCCCcCcCcccccCHhhC
Confidence 5678999999998654 456 59999999999999986421 224678999999876 665544
No 41
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=5.1e-08 Score=60.07 Aligned_cols=46 Identities=20% Similarity=0.500 Sum_probs=36.8
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
...+.|+||++.+..+ +.++|+|.||..|+.. ..+.||. |+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSSC
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----------CCCCCCc--CCcEeec
Confidence 4568899999998654 4689999999999866 2468999 9987654
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.40 E-value=2.7e-07 Score=61.88 Aligned_cols=53 Identities=9% Similarity=-0.102 Sum_probs=43.0
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccc
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLAC 101 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i 101 (237)
....+.|+||++.+.++ ++++|||.||+.|+..|+.. ...||. |+..+....+
T Consensus 11 ~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~l 63 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLN--------SPTDPF--NRQMLTESML 63 (85)
T ss_dssp CCTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCCGGGC
T ss_pred CchheECcccCchhcCC----eECCCCCEECHHHHHHHHhc--------CCCCCC--CcCCCChHhc
Confidence 35689999999998654 46789999999999999984 147999 9988876543
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.39 E-value=4.3e-07 Score=67.61 Aligned_cols=50 Identities=26% Similarity=0.616 Sum_probs=40.8
Q ss_pred CCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcc
Q 026529 37 GTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPL 99 (237)
Q Consensus 37 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~ 99 (237)
..+.|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+...
T Consensus 77 ~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 357899999998643 35799999999999999984 2368999 99887765
No 44
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.39 E-value=1.5e-07 Score=63.96 Aligned_cols=52 Identities=21% Similarity=0.553 Sum_probs=40.5
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
.....|+||++++...+.. ..++|+|.||..|+..|+... ..||. |+..+.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~Fh~~Ci~~wl~~~--------~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVA-TELPCHHYFHKPCVSIWLQKS--------GTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEE-EEETTTEEEEHHHHHHHHTTT--------CBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcE-EecCCCChHHHHHHHHHHHcC--------CcCcC--cCccCCC
Confidence 4567899999998654433 467899999999999998631 37999 9987664
No 45
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.39 E-value=8.9e-08 Score=67.24 Aligned_cols=50 Identities=24% Similarity=0.608 Sum_probs=39.7
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
...+.|+||++.+..+ +.+.+|||.||..|+..|+... ..||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETS--------KYCPI--CDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSC--------SBCTT--TCCBSCS
T ss_pred CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhC--------CcCcC--CCccccc
Confidence 4567999999998643 2235999999999999999742 68999 9987764
No 46
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.38 E-value=8.6e-08 Score=70.41 Aligned_cols=47 Identities=32% Similarity=0.735 Sum_probs=37.8
Q ss_pred CcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
.+.|+||++.+..+ ++++|||.||..|+..|+.. ...||. |+..+..
T Consensus 53 ~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE----EEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCCC
T ss_pred cCCCcccCcccCCc----eECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCCC
Confidence 46899999998543 46799999999999999763 246999 9987754
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=8.5e-08 Score=68.37 Aligned_cols=50 Identities=22% Similarity=0.453 Sum_probs=39.9
Q ss_pred CCCcccccccccCCCCccccccC-CCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNN-LCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLAC 101 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i 101 (237)
...+.|+||++.+..+ +.+ +|||.||..|+..|+. ..||. |+..+....+
T Consensus 20 ~~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~~~~ 70 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWIQDL 70 (117)
T ss_dssp HHTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSCSSC
T ss_pred hhCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCccccc
Confidence 4568999999998654 355 9999999999998875 57999 9988765443
No 48
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=3.1e-08 Score=63.89 Aligned_cols=51 Identities=25% Similarity=0.587 Sum_probs=39.7
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccc
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLA 100 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~ 100 (237)
......|+||++.+.. +.++|+|.||..|+..|+.. ...||. |+..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDR--------HRNCPI--CRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCC--------CSSCHH--HHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHC--------cCcCCC--cCCcccCCC
Confidence 3456799999999853 36799999999999998761 357998 987766543
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.2e-07 Score=73.51 Aligned_cols=60 Identities=22% Similarity=0.385 Sum_probs=47.0
Q ss_pred cCCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccc
Q 026529 34 DIDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACK 102 (237)
Q Consensus 34 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~ 102 (237)
.....+.|+||++.+..+ +.+..|||.||+.||..|+... ....||..||...+...++.
T Consensus 177 ~~~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~------~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGY------TTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp SSBCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTC------SCEECSGGGCSCEECGGGEE
T ss_pred CCceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhC------CCCCCCcccccCcCchhhCC
Confidence 346678999999999654 1246999999999999999731 34789999999988766554
No 50
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.29 E-value=4.5e-07 Score=57.94 Aligned_cols=49 Identities=29% Similarity=0.613 Sum_probs=38.6
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
.....|+||++.+..+ ...++|+|.||..|+..|+... ..||. |+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQN--------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHS--------CSTTT--TCCCCC
T ss_pred CCCCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCc--------CcCcC--CChhhH
Confidence 3456899999998542 1468999999999999998632 47999 998765
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.28 E-value=1.8e-07 Score=66.37 Aligned_cols=48 Identities=27% Similarity=0.663 Sum_probs=38.4
Q ss_pred CcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
.+.|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+..
T Consensus 15 ~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEK-------ASLCCPF--CRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCT-------TTSBCTT--TCCBCHH
T ss_pred CCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhH-------CcCCCCC--CCcccCc
Confidence 46899999998643 35699999999999988752 2378999 9988764
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.25 E-value=5.3e-07 Score=62.09 Aligned_cols=52 Identities=12% Similarity=-0.144 Sum_probs=42.4
Q ss_pred CCCCcccccccccCCCCccccccCCCC-CcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccc
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCT-HPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLA 100 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~-H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~ 100 (237)
....+.|+||++.+.++ ++++|| |.||+.||..|+.. ...||. |+..+...+
T Consensus 19 ~p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~~ 71 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMDQ 71 (98)
T ss_dssp CCTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTTT
T ss_pred CcHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChhh
Confidence 35689999999998654 468999 99999999999984 137999 998887643
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=4.5e-07 Score=60.19 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=39.6
Q ss_pred CCcccccccccCCC-----------CccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccc
Q 026529 37 GTFTCDICIEPMSV-----------NNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLAC 101 (237)
Q Consensus 37 ~~~~C~IC~~~~~~-----------~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i 101 (237)
...+|+||++++.. .+..+.+..|+|.|+.+|+..|+... -.||. |+..+....+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~~~~~ 79 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWVVQRI 79 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCCEEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcchhhc
Confidence 34568888888743 22233455799999999999998742 27999 9988776543
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=8.9e-07 Score=57.81 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=33.6
Q ss_pred CcccccccccCCCCccccccCCCCCc-chHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
...|+||++.+..+ ++++|||. ||..|+.+ ...||. |+..+..
T Consensus 25 ~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA------------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCCC
T ss_pred CCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC------------CCCCcc--CCceecC
Confidence 45899999987542 46899999 99999952 157999 9987654
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.16 E-value=8e-07 Score=61.42 Aligned_cols=52 Identities=10% Similarity=-0.124 Sum_probs=42.2
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccc
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLA 100 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~ 100 (237)
....+.|+||++.+.++ ++++|||.||+.|+..|+.. ...||. |+..+...+
T Consensus 26 ~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~~ 77 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTESM 77 (100)
T ss_dssp CSTTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCTTS
T ss_pred CcHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCChhh
Confidence 45689999999998654 46789999999999999973 247999 998887643
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.10 E-value=5.2e-06 Score=70.50 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=41.8
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccc
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLAC 101 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i 101 (237)
......|+||++....+ +.++|||.||..|+..|... ....||. |+..+....+
T Consensus 329 ~~~~~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~-------~~~~CP~--CR~~i~~~~~ 382 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQES-------EGQGCPF--CRCEIKGTEP 382 (389)
T ss_dssp TTSSSBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHH-------TCSBCTT--TCCBCCEEEE
T ss_pred cCCCCCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhc-------CCCCCCC--CCCccCCcee
Confidence 34457999999988532 46899999999999999873 2347999 9988776543
No 57
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.10 E-value=2.1e-06 Score=64.87 Aligned_cols=48 Identities=29% Similarity=0.764 Sum_probs=38.2
Q ss_pred CcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
.+.|+||++.+..+ +.+.+|||.||..|+..|+.. ....||. |+..+.
T Consensus 54 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKNT---MTTKECLHRFCADCIITALRS-------GNKECPT--CRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHT-------TCCBCTT--TCCBCC
T ss_pred CCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHh-------CcCCCCC--CCCcCC
Confidence 46899999998643 234599999999999999983 1367999 998774
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.10 E-value=2.5e-07 Score=60.34 Aligned_cols=43 Identities=23% Similarity=0.527 Sum_probs=34.4
Q ss_pred CcccccccccCCCCccccccCCCCCc-chHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
...|+||++.+..+ ++++|||. ||..|+..+ ..||. |+..+..
T Consensus 24 ~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------------DKCPM--CYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC------------SBCTT--TCCBCSE
T ss_pred CCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC------------ccCCC--cCcCccC
Confidence 45899999987532 46799999 999998765 57999 9987653
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.00 E-value=2.3e-06 Score=61.91 Aligned_cols=59 Identities=25% Similarity=0.629 Sum_probs=45.3
Q ss_pred CCCCcccccccccCCCC---ccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccccc
Q 026529 35 IDGTFTCDICIEPMSVN---NKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKP 103 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~ 103 (237)
+.....|+||++.+..+ ....+.++|||.||..|+..|+... ..||. |+..+...++..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHP 130 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTT--TCCBCCGGGEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCC--CCCcCChhccee
Confidence 45678899999988542 1122467999999999999999742 38999 999988877654
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.91 E-value=5.2e-06 Score=67.76 Aligned_cols=52 Identities=10% Similarity=-0.065 Sum_probs=41.6
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLA 100 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~ 100 (237)
...+.|+||++.+.++ ++++|||+||+.|+..|+... + ..||. |+..+....
T Consensus 206 ~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~----~---~~cP~--~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRV----G---HFNPV--TRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHT----C---SSCTT--TCCCCCGGG
T ss_pred CcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHC----C---CCCcC--CCCCCchhc
Confidence 4578999999998654 467899999999999999741 1 23999 999887654
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.86 E-value=1.3e-05 Score=61.05 Aligned_cols=53 Identities=11% Similarity=-0.037 Sum_probs=42.3
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccc
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLA 100 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~ 100 (237)
....+.|+||++.+.++ ++++|||.||+.|+..|+... + . .||. |+..+...+
T Consensus 103 ip~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~----~--~-tcP~--t~~~l~~~~ 155 (179)
T 2f42_A 103 IPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRV----G--H-FDPV--TRSPLTQDQ 155 (179)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHT----C--S-BCTT--TCCBCCGGG
T ss_pred CcHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhC----C--C-CCCC--CcCCCChhh
Confidence 35678999999998654 467999999999999999852 1 1 6999 998887654
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=1.4e-05 Score=52.72 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=41.6
Q ss_pred CCCcccccccccCCCCccccccCCCC-----CcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCT-----HPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPL 99 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~ 99 (237)
.....|.||++++...+.+ +++|. |.|..+||.+|+... ....||. |+..+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~------~~~~Cpl--Cr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSS------DTRCCEL--CKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHH------CCSBCSS--SCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhC------CCCCCCC--CCCeeecC
Confidence 3456899999998654444 47885 999999999999853 2468999 99877654
No 63
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.82 E-value=1.9e-05 Score=54.98 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=40.0
Q ss_pred CCCcccccccccCCCC--------------ccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcc
Q 026529 36 DGTFTCDICIEPMSVN--------------NKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPL 99 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~--------------~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~ 99 (237)
.....|.||++.+... +..+..++|+|.|+..|+..|+.. ...||. |+..+...
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~~~~ 102 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEFQ 102 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBCCEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCcceee
Confidence 3456899999998543 111345799999999999999874 247998 99876543
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.71 E-value=2.7e-06 Score=56.11 Aligned_cols=43 Identities=26% Similarity=0.667 Sum_probs=33.8
Q ss_pred CcccccccccCCCCccccccCCCCCc-chHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
...|.||++..... ++++|||. ||..|+..+ ..||. |+..+..
T Consensus 18 ~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINS----TFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCEeEEeCcccCcE----EEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 35899999887432 46899999 999998744 18999 9987664
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=2.7e-05 Score=49.64 Aligned_cols=45 Identities=24% Similarity=0.600 Sum_probs=34.8
Q ss_pred CCCcccccccccCCCCccccccCCCCCc-chHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
.....|.||++.... +++++|+|. ||..|+.. ...||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~------------~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKY------------FQQCPM--CRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHH------------CSSCTT--TCCCCCC
T ss_pred CCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhc------------CCCCCC--CCcchhc
Confidence 346789999988743 257899999 99999983 147999 9987653
No 66
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.59 E-value=2.1e-05 Score=49.34 Aligned_cols=48 Identities=17% Similarity=0.384 Sum_probs=35.8
Q ss_pred CcccccccccCCCCccccccCCCCCc-chHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
...|.||++..... .+...+|||. ||.+|...+... .-+||. |+..+.
T Consensus 7 ~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKA--------GASCPI--CKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHT--------TCBCTT--TCCBCC
T ss_pred CCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHh--------CCcCCC--cCchhh
Confidence 45899999986432 2224599998 999999988753 147999 998764
No 67
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.58 E-value=2.3e-05 Score=49.35 Aligned_cols=49 Identities=22% Similarity=0.383 Sum_probs=35.9
Q ss_pred CCcccccccccCCCCccccccCCCCCc-chHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 37 GTFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 37 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
....|.||++..... .+..++|||. ||.+|+..+... .-.||. |+..+.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 345899999987432 2112399999 899999998862 137999 998765
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.32 E-value=4.1e-05 Score=54.17 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=0.9
Q ss_pred CCcccccccccCCCC--------------ccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 37 GTFTCDICIEPMSVN--------------NKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 37 ~~~~C~IC~~~~~~~--------------~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
....|.||++++... +..+..++|+|.|+..|+..|+.. ...||. |+..+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--------~~~CP~--Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEF 112 (117)
T ss_dssp CC--------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--------CCcCCC--CCCeeee
Confidence 446899999998532 112234689999999999999875 236998 9876543
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.27 E-value=0.00029 Score=45.48 Aligned_cols=51 Identities=25% Similarity=0.612 Sum_probs=39.3
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
....+|.||++.+..... -..|+|.|...|+.+|+++. ..-.||. |+..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~---C~~C~h~fH~~Ci~kWl~~~------~~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSN------AEPRCPH--CNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEE---CSSSCCEECHHHHHHHSTTC------SSCCCTT--TCSCCC
T ss_pred CCCCcCcchhhHcccCCc---cCCCCchhhHHHHHHHHHhc------CCCCCCC--CcCcCC
Confidence 445689999999965332 34999999999999999753 2257998 997765
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.23 E-value=3.7e-05 Score=64.70 Aligned_cols=45 Identities=24% Similarity=0.626 Sum_probs=35.7
Q ss_pred CCCcccccccccCCCCccccccCCCCCc-chHHHHHHHHHhccccCCcccccCCCCcCCCCCCc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHP-FCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDP 98 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~ 98 (237)
.....|+||++.+..+ +.++|||. ||..|+..+ ..||. |+..+..
T Consensus 293 ~~~~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV----VFIPCGHLVVCQECAPSL------------RKCPI--CRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCE----EEETTCCEEECTTTGGGC------------SBCTT--TCCBCCE
T ss_pred cCCCCCCccCCcCCce----EEcCCCChhHhHHHHhcC------------CcCCC--CCCCccC
Confidence 3457999999988542 46799999 999998754 47999 9987653
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.75 E-value=0.00094 Score=55.50 Aligned_cols=62 Identities=16% Similarity=0.387 Sum_probs=43.2
Q ss_pred CCCcccccccccCCCCcccc----ccCCCCCcchHHHHHHHHHhccccC---CcccccCCCCcCCCCCCcc
Q 026529 36 DGTFTCDICIEPMSVNNKFK----NNNLCTHPFCQDCTAKYIEVKVRDN---NTAKIECPGLHCEQFLDPL 99 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~----~~~~C~H~fC~~Cl~~~~~~~i~~~---~~~~i~CP~~~C~~~~~~~ 99 (237)
....+|+||++.+.....++ ....|+|.|...|+.+|+.+.-... +...=.||. |+..++-.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCcc
Confidence 45679999999986522221 1347999999999999998754321 122347998 99877643
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.53 E-value=0.0013 Score=40.66 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=39.9
Q ss_pred CcccccccccCCCCccccccC-CCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccccc
Q 026529 38 TFTCDICIEPMSVNNKFKNNN-LCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKP 103 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~ 103 (237)
.+.|+|+++.+.++ +.. .+||.|++.++.+|+... + .||. .+..+...++..
T Consensus 3 ~~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~~---~-----~cP~--t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKDT---G-----NDPI--TNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHHH---S-----BCTT--TCCBCCGGGCEE
T ss_pred eEEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHhC---C-----CCcC--CcCCCChhhcEE
Confidence 47899999998654 355 899999999999999842 1 3998 778887766544
No 73
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.41 E-value=0.0019 Score=39.76 Aligned_cols=40 Identities=25% Similarity=0.723 Sum_probs=34.0
Q ss_pred CCcccCCCCCCCceeeccccccCCcCcccCcc--cccccccccccccC
Q 026529 125 LERSYCPNRNCMAVMVNECEEIGRVKKAQCPK--CKQWFCFQCKLAWH 170 (237)
Q Consensus 125 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~--C~~~~C~~C~~~~H 170 (237)
.+.+.|| .|+..+....+- +.++|.. |+..||+.|..+|.
T Consensus 4 ~~~k~CP--~C~~~Iek~~GC----nhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 4 ANTKECP--KCHVTIEKDGGC----NHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCCT--TTCCCCSSCCSC----CSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ccceECc--CCCCeeEeCCCC----CcEEECCCCcCCEEeeCcCCCcc
Confidence 3457899 999999987764 8999987 99999999999874
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.96 E-value=0.0078 Score=36.98 Aligned_cols=50 Identities=20% Similarity=0.494 Sum_probs=36.1
Q ss_pred CCCcccccccccCCCCccccccCCC--CC---cchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLC--TH---PFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C--~H---~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
.....|.||+++.. +.+ ..+| .+ .|..+||.+|+... ....||. |+..+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l--~~PC~C~gs~~~~H~~Cl~~W~~~~------~~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER--FRACGCTGELENVHRSCLSTWLTIS------RNTACQI--CGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC--CCSCCCSSGGGSCCHHHHHHHHHHH------TCSBCTT--TCCBCC
T ss_pred CCCCEeEEeecCCC--Cce--ecCcCCCCchhhhHHHHHHHHHHhC------CCCccCC--CCCeee
Confidence 45668999999853 233 3565 45 89999999999753 1368998 987654
No 75
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=94.90 E-value=0.021 Score=37.79 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=28.5
Q ss_pred CCcccCCCCCcceeccCCCCceeec-Cc--cEEEecccC
Q 026529 196 MNWTRCPGCGNCIERKKGCRIMFCR-FI--FLSLCLCIF 231 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~-C~--~cf~c~~~~ 231 (237)
.+.+-||+|...+....+-..++|. |+ |||.|...|
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4556799999999888887889996 98 555576666
No 76
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=94.88 E-value=0.011 Score=38.66 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=28.1
Q ss_pred CCcccCCC--CCcceeccCCCCceee------cCccEEEeccc
Q 026529 196 MNWTRCPG--CGNCIERKKGCRIMFC------RFIFLSLCLCI 230 (237)
Q Consensus 196 ~~~k~CP~--C~~~iek~~GCnhm~C------~C~~cf~c~~~ 230 (237)
...+-||+ |+..|....+...++| .||+.||..|.
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~ 65 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECK 65 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTT
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccC
Confidence 35789997 9999999989999999 69865554444
No 77
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.79 E-value=0.025 Score=38.20 Aligned_cols=46 Identities=30% Similarity=0.665 Sum_probs=31.3
Q ss_pred ccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 40 TCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 40 ~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
-|++|--++. ....+.+|.|.||.+|...|.+... -.||. |...+.
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~-------k~Cp~--C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGD-------KMCPG--CSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTC-------CBCTT--TCCBCS
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccC-------CCCcC--cCCeee
Confidence 4777754442 2234789999999999999887432 24776 776543
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.14 E-value=0.053 Score=36.73 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.0
Q ss_pred cCcccCccccccccccccc-ccCCCCC
Q 026529 149 VKKAQCPKCKQWFCFQCKL-AWHAGYR 174 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 174 (237)
...+.|..|+..+|..|.. ..|.++.
T Consensus 69 ~l~~fC~~~~~~iC~~C~~~~~H~~H~ 95 (101)
T 2jun_A 69 KVNMYCVTDDQLICALCKLVGRHRDHQ 95 (101)
T ss_dssp CCCEEETTTTEEECHHHHHHTTTSSSC
T ss_pred cceEECCCCCCccchhcCCCCCcCCCC
Confidence 4678899999999999986 6888764
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.35 E-value=0.23 Score=31.83 Aligned_cols=49 Identities=31% Similarity=0.719 Sum_probs=36.7
Q ss_pred CCCCcccccccccCCCCccccccCCC----CCcchHHHHHHHHHhccccCCcccccCCCC
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLC----THPFCQDCTAKYIEVKVRDNNTAKIECPGL 90 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C----~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~ 90 (237)
+...+.|.+|-+.+.+ ..| ..| .|.||..|-+.+|+.+-. ...+.||..
T Consensus 12 ~~a~l~CtlC~erLEd-tHF---VQCPsv~~HkFCFpCsr~sIk~q~~---~~EvyCPSG 64 (93)
T 2cs3_A 12 NSGPLCCTICHERLED-THF---VQCPSVPSHKFCFPCSRESIKAQGA---TGEVYCPSG 64 (93)
T ss_dssp SCCSCCCSSSCSCCSS-TTS---EECSSCSSCEECHHHHHHHHHHHHS---SSCCCCTTS
T ss_pred CCCeeEeecchhhhcc-Cce---eeCCCccCCeeeccccHHHHHhcCC---CCcEECCCC
Confidence 4667899999998843 233 234 799999999999998753 456788853
No 80
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.19 E-value=0.052 Score=35.99 Aligned_cols=48 Identities=25% Similarity=0.472 Sum_probs=34.7
Q ss_pred CCCcccccccccCCCCccccccCCC-CCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLC-THPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPL 99 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~ 99 (237)
-+.+.|..|+-... . +..| .|..|..|+...+.. .=+||. |+..|+-.
T Consensus 26 ~G~~nCKsCWf~~k---~---LV~C~dHYLCl~CLtlmL~~--------SdrCpI--C~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENK---G---LVECNNHYLCLNCLTLLLSV--------SNRCPI--CKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCS---S---EEECSSCEEEHHHHHHTCSS--------SSEETT--TTEECCCC
T ss_pred cCcccChhhccccC---C---eeeecchhhHHHHHHHHHhh--------ccCCcc--cCCcCCcc
Confidence 56789999996663 2 3455 699999999887653 236888 99876643
No 81
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.11 E-value=0.21 Score=39.53 Aligned_cols=53 Identities=25% Similarity=0.562 Sum_probs=40.3
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcc
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPL 99 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~ 99 (237)
.....|.||.+-+..... -..|+|.|...|+.+|+.. .....||. |+..++.+
T Consensus 178 ~~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~------~~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQS------NAEPRCPH--CNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTT------CSSCBCTT--TCCBCCSC
T ss_pred CCCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHh------CCCCCCCC--CCCCCCCC
Confidence 457789999999864322 3349999999999999974 33468997 99876654
No 82
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.36 E-value=0.2 Score=29.35 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=20.5
Q ss_pred CCcccCCCCCcceeccCCCCceeec-CccEE
Q 026529 196 MNWTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~-C~~cf 225 (237)
...+.||+|+..+.-...=+.+.|. |||-+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred EecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 4568999999844333222789996 99644
No 83
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=89.82 E-value=0.54 Score=30.80 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=41.0
Q ss_pred ccCCCCCCCceeeccccccCCcCcccCcccccccccccccccCCCCCChhhhhccccchHHHHHHHHhCCcccCCCCCcc
Q 026529 128 SYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCFQCKLAWHAGYRCEESGNLRDRNDIAFGKLLEKMNWTRCPGCGNC 207 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~ 207 (237)
..|- -|+--+-..... ...+.|..|++..|..| -+| ..+.+.+.||+|++.
T Consensus 17 qiCq--iCGD~VG~~~~G---e~FVAC~eC~FPvCrpC----------yEY--------------ErkeG~q~CpqCktr 67 (93)
T 1weo_A 17 QFCE--ICGDQIGLTVEG---DLFVACNECGFPACRPC----------YEY--------------ERREGTQNCPQCKTR 67 (93)
T ss_dssp CBCS--SSCCBCCBCSSS---SBCCSCSSSCCCCCHHH----------HHH--------------HHHTSCSSCTTTCCC
T ss_pred Cccc--cccCccccCCCC---CEEEeeeccCChhhHHH----------HHH--------------HHhccCccccccCCc
Confidence 4555 666554444332 48889999999999755 333 235677999999999
Q ss_pred eeccCCCC
Q 026529 208 IERKKGCR 215 (237)
Q Consensus 208 iek~~GCn 215 (237)
+.+..|.-
T Consensus 68 Ykr~kgsp 75 (93)
T 1weo_A 68 YKRLRGSP 75 (93)
T ss_dssp CCCCTTCC
T ss_pred cccccCCC
Confidence 98776654
No 84
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=87.40 E-value=0.39 Score=34.36 Aligned_cols=36 Identities=11% Similarity=0.257 Sum_probs=27.5
Q ss_pred CCCcccCCCCCCCceeeccccccCCcCcccCccccccc
Q 026529 124 GLERSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 124 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
.....+|| .|+.++.+....+.....+.|+.|++..
T Consensus 21 ~~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCC--CCCCEeeECccCCCceeEEECCCCCCcE
Confidence 35578999 9999998886543345689999999865
No 85
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=87.05 E-value=0.4 Score=27.83 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=21.6
Q ss_pred CcccCCCCCc-ceeccCCCCceeec-CccEE
Q 026529 197 NWTRCPGCGN-CIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~-~iek~~GCnhm~C~-C~~cf 225 (237)
....||.|+. .+..+..=..+.|. ||.-|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3468999988 77776665689997 98643
No 86
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=85.63 E-value=0.43 Score=28.49 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=21.1
Q ss_pred CcccCCCCCcceeccCCCCceeec-CccEE
Q 026529 197 NWTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~cf 225 (237)
..+.||+|+..+.-...-+.++|. ||+-+
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 458999999865543444689996 98654
No 87
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=83.13 E-value=0.39 Score=29.13 Aligned_cols=36 Identities=22% Similarity=0.699 Sum_probs=25.4
Q ss_pred ccCCCCCCCceeeccccccCCcCcccCcccccccccccccccCCC
Q 026529 128 SYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCFQCKLAWHAG 172 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~ 172 (237)
..|- .|...+.. .....|+.|+..||..|..-.|..
T Consensus 16 ~~C~--~C~~~~~~-------~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 16 RFCY--GCQGELKD-------QHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CEET--TTTEECTT-------SEEECCTTTTCCBCHHHHHTTTTT
T ss_pred Cccc--ccCcccCC-------CccEECCccCcCcccchhHHHHhh
Confidence 3465 77666531 123679999999999998777754
No 88
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=82.89 E-value=0.56 Score=30.58 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=25.8
Q ss_pred CCcccCCCCCcceeccCCCCceeec-CccEEE
Q 026529 196 MNWTRCPGCGNCIERKKGCRIMFCR-FIFLSL 226 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~-C~~cf~ 226 (237)
..--.||.|+....+..+=..+.|. |++.|.
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 3457999999988888777799997 998775
No 89
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.49 E-value=1.9 Score=27.37 Aligned_cols=54 Identities=24% Similarity=0.555 Sum_probs=32.4
Q ss_pred cccCCCCCCCceeeccccccCCcCcccCcccccccccccccccCCCCCChhhhhccccchHHHHHHHHhCCcccCCCCCc
Q 026529 127 RSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCFQCKLAWHAGYRCEESGNLRDRNDIAFGKLLEKMNWTRCPGCGN 206 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~ 206 (237)
...|| -|...+.. ... - .|++.||..|...|-. ..........||.|+.
T Consensus 19 ~~~C~--IC~~~~~~--------p~~-~-~CgH~fC~~Ci~~~~~-------------------~~~~~~~~~~CP~Cr~ 67 (85)
T 2ecv_A 19 EVTCP--ICLELLTQ--------PLS-L-DCGHSFCQACLTANHK-------------------KSMLDKGESSCPVCRI 67 (85)
T ss_dssp CCCCT--TTCSCCSS--------CBC-C-SSSCCBCTTHHHHHHH-------------------HHHHTTSCCCCTTTCC
T ss_pred CCCCC--CCCcccCC--------cee-C-CCCCHHHHHHHHHHHH-------------------HhhcCCCCCcCCCCCC
Confidence 45677 77665421 111 1 5899999888654321 1111234689999999
Q ss_pred ceecc
Q 026529 207 CIERK 211 (237)
Q Consensus 207 ~iek~ 211 (237)
.+...
T Consensus 68 ~~~~~ 72 (85)
T 2ecv_A 68 SYQPE 72 (85)
T ss_dssp SSCSS
T ss_pred ccCHH
Confidence 88754
No 90
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=81.34 E-value=1.3 Score=27.69 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=24.1
Q ss_pred CcccCCCCCcceeccCCCCceeec-CccEE
Q 026529 197 NWTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~cf 225 (237)
.+-.||.|+..++-..+...++|. ||.-|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 456899999999988888899997 98554
No 91
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.30 E-value=0.2 Score=31.63 Aligned_cols=33 Identities=27% Similarity=0.609 Sum_probs=23.8
Q ss_pred ccccccccccccccCCCCCChhhhhccccchHHHHHHHHhCCcccCCCCCcceeccCC
Q 026529 156 KCKQWFCFQCKLAWHAGYRCEESGNLRDRNDIAFGKLLEKMNWTRCPGCGNCIERKKG 213 (237)
Q Consensus 156 ~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~iek~~G 213 (237)
.|++.||..|...| +... ..||-|+..+...+|
T Consensus 43 ~C~H~fh~~Ci~~w-----------------------~~~~--~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 43 PCNHEFHAKCVDKW-----------------------LKAN--RTCPICRADSGPSSG 75 (75)
T ss_dssp TTTEEEETTHHHHH-----------------------HHHC--SSCTTTCCCCCCCCC
T ss_pred CCCCHhHHHHHHHH-----------------------HHcC--CcCcCcCCcCCCCCC
Confidence 48888988776444 2221 589999999987766
No 92
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=81.10 E-value=0.47 Score=33.94 Aligned_cols=31 Identities=23% Similarity=0.630 Sum_probs=20.2
Q ss_pred ccCCCCCCCceeeccccccCCcCcccCcccccccccccccccC
Q 026529 128 SYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCFQCKLAWH 170 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H 170 (237)
..|| -|...+... +.- .||+.||..|-..|-
T Consensus 54 ~~C~--iC~~~~~~~---------~~~-~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 54 LQCI--ICSEYFIEA---------VTL-NCAHSFCSYCINEWM 84 (138)
T ss_dssp SBCT--TTCSBCSSE---------EEE-TTSCEEEHHHHHHHT
T ss_pred CCCc--ccCcccCCc---------eEC-CCCCCccHHHHHHHH
Confidence 4688 787655311 112 489999999976553
No 93
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=79.60 E-value=1 Score=31.12 Aligned_cols=33 Identities=21% Similarity=0.529 Sum_probs=25.5
Q ss_pred cccCCCCCCCceeeccccccCCcCcccCccccccc
Q 026529 127 RSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
..+|| .|+..+.+..........+.|+.|++.+
T Consensus 4 m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 46899 9999998876543235689999999876
No 94
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=75.88 E-value=1.8 Score=30.30 Aligned_cols=30 Identities=17% Similarity=0.482 Sum_probs=23.3
Q ss_pred CcccCCCCCcceecc----CCCCceeec-CccEEE
Q 026529 197 NWTRCPGCGNCIERK----KGCRIMFCR-FIFLSL 226 (237)
Q Consensus 197 ~~k~CP~C~~~iek~----~GCnhm~C~-C~~cf~ 226 (237)
.++.||.|+.++.-. .+-+.+.|+ |+|.+-
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 468899999987733 567889997 998653
No 95
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=75.76 E-value=2.1 Score=29.47 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=22.5
Q ss_pred CcccCCCCCcceecc----CCCCceeec-CccEE
Q 026529 197 NWTRCPGCGNCIERK----KGCRIMFCR-FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~~iek~----~GCnhm~C~-C~~cf 225 (237)
..+.||.|+.++.-. .|.+.+.|+ |+|.+
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 357899999987544 367889997 99865
No 96
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=75.29 E-value=1.5 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.475 Sum_probs=23.4
Q ss_pred hCCcccCCCCCcceecc----CCCCceeec-CccEE
Q 026529 195 KMNWTRCPGCGNCIERK----KGCRIMFCR-FIFLS 225 (237)
Q Consensus 195 ~~~~k~CP~C~~~iek~----~GCnhm~C~-C~~cf 225 (237)
-...+.||.|+.++.-. .|.+.+.|+ |+|.+
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 45779999999987443 267889997 99754
No 97
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=73.81 E-value=1.5 Score=30.74 Aligned_cols=34 Identities=12% Similarity=0.319 Sum_probs=25.4
Q ss_pred CcccCCCCCCCceeeccccccCCcCcccCccccccc
Q 026529 126 ERSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 126 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
...+|| .|+.++.+..........+.|+.|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 357899 9999998775422235788999998866
No 98
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.28 E-value=12 Score=24.42 Aligned_cols=52 Identities=23% Similarity=0.592 Sum_probs=37.1
Q ss_pred CCcccccccccCCC---CccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCC
Q 026529 37 GTFTCDICIEPMSV---NNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLD 97 (237)
Q Consensus 37 ~~~~C~IC~~~~~~---~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~ 97 (237)
....|.||-+++-. .+.|+.-..|+-..|+.|+..-.. +| .-.||. |+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk----eG---~q~Cpq--CktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR----EG---TQNCPQ--CKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH----TS---CSSCTT--TCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh----cc---Cccccc--cCCccc
Confidence 44689999998632 345666667899999999976555 22 347988 887654
No 99
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=70.10 E-value=9.7 Score=30.09 Aligned_cols=60 Identities=8% Similarity=0.184 Sum_probs=31.3
Q ss_pred ccccCCChhHHHHHHHHHHHH-hh--cCCCcccCCCCCCCceeecccccc--CCcCcccCccccccc
Q 026529 100 ACKPTIPSSLFIKWCDHLCED-YV--LGLERSYCPNRNCMAVMVNECEEI--GRVKKAQCPKCKQWF 161 (237)
Q Consensus 100 ~i~~~l~~~~~~~~~~~~~~~-~~--~~~~~~~Cp~~~C~~~~~~~~~~~--~~~~~~~C~~C~~~~ 161 (237)
.+..-++++++..|.+..... -+ ..-....|- +|...+++..... .....++||.||...
T Consensus 168 ~l~~~i~~~lL~~Yerir~~~~g~avv~v~~~~C~--GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL 232 (256)
T 3na7_A 168 DLVEKTEPKIYSFYERIRRWAKNTSIVTIKKQACG--GCFIRLNDKIYTEVLTSGDMITCPYCGRIL 232 (256)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHGGGSEEECBTTBCT--TTCCBCCHHHHHHHHHSSSCEECTTTCCEE
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEeeCCccC--CCCeeeCHHHHHHHHCCCCEEECCCCCeeE
Confidence 445567889999998876532 11 111224455 6666555443210 012345566665543
No 100
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=66.56 E-value=2.4 Score=26.53 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=16.6
Q ss_pred ccCCCCCcceeccCCCCceeec-Ccc
Q 026529 199 TRCPGCGNCIERKKGCRIMFCR-FIF 223 (237)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (237)
-.|+.|+..++...+ +-+.|+ ||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 468888888776644 567776 775
No 101
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=65.46 E-value=3.8 Score=28.80 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=24.1
Q ss_pred CcccCCCCCcceeccCCCCceeec-CccEEE
Q 026529 197 NWTRCPGCGNCIERKKGCRIMFCR-FIFLSL 226 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~cf~ 226 (237)
..-.||+|..-..=.+| +.+.|. |++.|.
T Consensus 26 ~lP~CP~C~seytYeDg-~l~vCPeC~hEW~ 55 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDG-ALLVCPECAHEWS 55 (138)
T ss_dssp CSCCCTTTCCCCCEECS-SSEEETTTTEEEC
T ss_pred cCCCCCCCCCcceEecC-CeEECCccccccC
Confidence 45799999998877777 568998 999994
No 102
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=64.82 E-value=5.2 Score=24.83 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=20.8
Q ss_pred cccCCCCCcceeccCCCCceeec-CccEE
Q 026529 198 WTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~cf 225 (237)
+-.||.|+..++-..+=..++|. ||.-|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 36899999988876554578896 87544
No 103
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=64.35 E-value=5.8 Score=23.68 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=18.3
Q ss_pred CcccCCCCCc-ceeccCCCCceeec-CccE
Q 026529 197 NWTRCPGCGN-CIERKKGCRIMFCR-FIFL 224 (237)
Q Consensus 197 ~~k~CP~C~~-~iek~~GCnhm~C~-C~~c 224 (237)
....||.|+. .|..+..=.-+.|. ||.-
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 3357999976 45555444468997 8854
No 104
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=63.52 E-value=4.2 Score=26.36 Aligned_cols=31 Identities=19% Similarity=0.574 Sum_probs=24.3
Q ss_pred ccCCCCCCCceeeccccccCCcCcccCccccccccc
Q 026529 128 SYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
+.|| +|...-..-... ...+.|..|+...|.
T Consensus 37 VkCp--~C~~~~~VFShA---~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFSHS---QTVVVCPGCQTVLCQ 67 (86)
T ss_dssp EECT--TTCCEEEEETTC---SSCCCCSSSCCCCSC
T ss_pred EECC--CCCCeeEEEecC---CcEEEccCCCCEeec
Confidence 8899 999765554443 578999999999885
No 105
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=63.34 E-value=6.8 Score=24.44 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=21.9
Q ss_pred CcccCCCCCcceeccCCCCceeec-CccEE
Q 026529 197 NWTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~cf 225 (237)
.+-.||.|+..++-+.+=..++|. ||.-|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 446899999988877554578996 87544
No 106
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=62.90 E-value=6.4 Score=24.47 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=20.8
Q ss_pred cccCCCCCcceeccCCCCceeec-CccEE
Q 026529 198 WTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~cf 225 (237)
+-.||.|+..+.-..+=..++|. ||.-|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 46899999988866544578996 87544
No 107
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=62.28 E-value=2.7 Score=26.91 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=15.6
Q ss_pred cccCCCCcCCCCCCcc-ccccCCChh
Q 026529 84 KIECPGLHCEQFLDPL-ACKPTIPSS 108 (237)
Q Consensus 84 ~i~CP~~~C~~~~~~~-~i~~~l~~~ 108 (237)
--+||. |+.+++-. .|.+.|..+
T Consensus 8 ~~~~Pl--CG~~L~W~eLIeQML~~e 31 (95)
T 2k5c_A 8 MAKCPI--CGSPLKWEELIEEMLIIE 31 (95)
T ss_dssp CEECSS--SCCEECHHHHHHHSTTCS
T ss_pred cccCCc--CCCccCHHHHHHHHHhhc
Confidence 357999 99988764 445566543
No 108
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=61.05 E-value=6.2 Score=26.26 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=19.5
Q ss_pred ccCCCCCcceeccCCCCceeec-Ccc
Q 026529 199 TRCPGCGNCIERKKGCRIMFCR-FIF 223 (237)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (237)
..||.|+..++..+| +.+|. |+-
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~ 56 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGE 56 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCC
T ss_pred ccCccCCCcceecCC--EEECccccc
Confidence 899999999999888 66786 853
No 109
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=60.77 E-value=4.9 Score=26.02 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=22.8
Q ss_pred cccCCCCCCCceeeccccccCCcCcccCcccccccc
Q 026529 127 RSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFC 162 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C 162 (237)
...|| .|+........ ...+.|+.|++.|-
T Consensus 27 ~y~Cp--~CG~~~v~r~a----tGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACP--NCGEDRVDRQG----TGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECS--SSCCEEEEEEE----TTEEEETTTCCEEE
T ss_pred cCcCC--CCCCcceeccC----CCeEECCCCCCEec
Confidence 46799 99986666555 36889999998874
No 110
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=60.46 E-value=3.5 Score=26.43 Aligned_cols=31 Identities=19% Similarity=0.513 Sum_probs=23.9
Q ss_pred ccCCCCCCCceeeccccccCCcCcccCccccccccc
Q 026529 128 SYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
+.|| +|...-..-... ...+.|..|+...|.
T Consensus 33 VkCp--~C~n~q~VFShA---~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFSNA---QSTIICEKCSAILCK 63 (81)
T ss_dssp EECS--SSCCEEEEETTC---SSCEECSSSCCEEEE
T ss_pred eECC--CCCCeeEEEecC---ccEEEccCCCCEEee
Confidence 7899 998765554443 588999999998874
No 111
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=59.12 E-value=4.4 Score=26.17 Aligned_cols=37 Identities=16% Similarity=0.403 Sum_probs=25.9
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHH
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKY 72 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 72 (237)
.....|.+|...|.....-..-..||..||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4456899999888543322234579999999997653
No 112
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=58.77 E-value=6.8 Score=25.48 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=22.8
Q ss_pred CcccCCCCCcc------eeccCCCCceeec-CccEEEe
Q 026529 197 NWTRCPGCGNC------IERKKGCRIMFCR-FIFLSLC 227 (237)
Q Consensus 197 ~~k~CP~C~~~------iek~~GCnhm~C~-C~~cf~c 227 (237)
..-.||.|++. |.|..|=-+++|+ ||..|-.
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 44689999875 4456777899997 9855543
No 113
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=58.04 E-value=7 Score=25.13 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=12.5
Q ss_pred ccCCCCCcceeccCCCCceeec-Cc
Q 026529 199 TRCPGCGNCIERKKGCRIMFCR-FI 222 (237)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~ 222 (237)
..||.|+..++.++| +..|. |+
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~ 25 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCA 25 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTC
T ss_pred CCCCCCCCccccCCC--ceECcccc
Confidence 456666666666655 44454 53
No 114
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=57.66 E-value=4.7 Score=25.90 Aligned_cols=37 Identities=24% Similarity=0.628 Sum_probs=25.9
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHH
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAK 71 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 71 (237)
+.....|.+|...|.....-..-..||..||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4455689999988854322223457999999999864
No 115
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=56.81 E-value=6.2 Score=28.04 Aligned_cols=35 Identities=23% Similarity=0.543 Sum_probs=23.9
Q ss_pred CCCcccccccccCCC-CccccccCCCCCcchHHHHH
Q 026529 36 DGTFTCDICIEPMSV-NNKFKNNNLCTHPFCQDCTA 70 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~fC~~Cl~ 70 (237)
...-.|.+|..++.. ...-..-..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 456789999999832 12222356799999988743
No 116
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=56.59 E-value=2.6 Score=25.86 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=25.8
Q ss_pred CCCcccccccccCCCCccccccCCC-CCcchHHHHHHHHH
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLC-THPFCQDCTAKYIE 74 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~~ 74 (237)
....-|.||.++-. + .-..| +-.||..||+..-.
T Consensus 6 ee~pWC~ICneDAt----l-rC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 6 SGLPWCCICNEDAT----L-RCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCSSCTTTCSCCC----E-EETTTTSEEECSSHHHHHTT
T ss_pred cCCCeeEEeCCCCe----E-EecCCCCceehHHHHHHHcc
Confidence 44567999998842 1 36788 78999999998764
No 117
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=56.23 E-value=3.4 Score=26.55 Aligned_cols=31 Identities=19% Similarity=0.622 Sum_probs=23.6
Q ss_pred ccCCCCCCCceeeccccccCCcCcccCccccccccc
Q 026529 128 SYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
+.|| +|...-..-... ...+.|..|+...|.
T Consensus 35 VkCp--~C~~~q~VFSha---~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCP--GCLNITTVFSHA---QTAVTCESCSTILCT 65 (82)
T ss_dssp EECT--TSCSCEEEESBC---SSCCCCSSSCCCCEE
T ss_pred EECC--CCCCeeEEEecC---CeEEEccccCCEEec
Confidence 8899 998765554443 578999999998874
No 118
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=55.36 E-value=4 Score=28.70 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=22.3
Q ss_pred CcccCCCCCCCceeeccccccCCcCcccCccccccc
Q 026529 126 ERSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 126 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
..-.|| .|+.-+.+++. ..+.||.|++.|
T Consensus 26 ~lP~CP--~C~seytYeDg-----~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCP--QCNSEYTYEDG-----ALLVCPECAHEW 54 (138)
T ss_dssp CSCCCT--TTCCCCCEECS-----SSEEETTTTEEE
T ss_pred cCCCCC--CCCCcceEecC-----CeEECCcccccc
Confidence 345688 89888777765 578899998876
No 119
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=55.29 E-value=4.9 Score=29.20 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=23.4
Q ss_pred cccCCCCCCCceeeccccccCCcCcccCccccccccc
Q 026529 127 RSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
...||++.|+..+.-.... .+..|-.|++.+++
T Consensus 118 ~~~c~~~~cg~g~fma~h~----~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHK----DRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECS----SCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEecccC----CCcccCCCceEEEe
Confidence 4789988898744433332 57889889888765
No 120
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=54.48 E-value=24 Score=27.51 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=13.9
Q ss_pred HHHHHhCCcccCCCCCcceec
Q 026529 190 GKLLEKMNWTRCPGCGNCIER 210 (237)
Q Consensus 190 ~~~~~~~~~k~CP~C~~~iek 210 (237)
.++.+...-..||.|+.....
T Consensus 209 ~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 209 AKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp HHHTTTCSSCBCTTTCCBCCS
T ss_pred HHHHHhCCCCCCCCCCCCCCC
Confidence 345544555799999987543
No 121
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=54.21 E-value=10 Score=23.38 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=21.4
Q ss_pred CcccCCCCCcceeccCCCCceeec-CccEE
Q 026529 197 NWTRCPGCGNCIERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~cf 225 (237)
.+-.||.|+..++-...=+.++|. ||.-|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 457899999988876544578896 87544
No 122
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=53.99 E-value=8.7 Score=24.19 Aligned_cols=31 Identities=26% Similarity=0.256 Sum_probs=23.1
Q ss_pred cccCCCCCcceeccCCCCceeecCccEEEecccCC
Q 026529 198 WTRCPGCGNCIERKKGCRIMFCRFIFLSLCLCIFS 232 (237)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~C~~cf~c~~~~~ 232 (237)
..+|..|+..+...+ +.|+||.-||=.-.++
T Consensus 25 ~nRC~~CrKkvgL~g----f~CrCg~~FCs~HRy~ 55 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG----FDCRCGNLFCGLHRYS 55 (74)
T ss_dssp TTBCSSSCCBCGGGC----EECTTSCEECSSSCST
T ss_pred CCcChhhCCcccccC----eecCCCCEechhcCCC
Confidence 368999999988874 6899987777544443
No 123
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=53.69 E-value=9 Score=23.40 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=23.3
Q ss_pred CcccCCCCCcceeccCCCCceeecCccEEEecccCC
Q 026529 197 NWTRCPGCGNCIERKKGCRIMFCRFIFLSLCLCIFS 232 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~C~~cf~c~~~~~ 232 (237)
...+|..|+..+... -+.|+||.-||=.-.++
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HRy~ 45 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT----GFMCRCGTTFCGSHRYP 45 (64)
T ss_dssp SCCCCTTTCCCCCTT----CEECSSSCEECTTTCST
T ss_pred cCCcChhhCCccCcc----CEEeecCCEeccccCCc
Confidence 447899999988776 37888987777544443
No 124
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.74 E-value=5.9 Score=25.52 Aligned_cols=36 Identities=25% Similarity=0.523 Sum_probs=24.5
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHH
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAK 71 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 71 (237)
.....|.+|...|.....-..-..||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 445689999988854322223457999999999544
No 125
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=51.78 E-value=5.1 Score=28.08 Aligned_cols=35 Identities=29% Similarity=0.601 Sum_probs=24.6
Q ss_pred CcccccccccCCCCccccccCCCCCcchHHHHHHH
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKY 72 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 72 (237)
...|.+|...|.....-..-..||+.||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45799999888543222234579999999997654
No 126
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=51.75 E-value=5.2 Score=26.21 Aligned_cols=36 Identities=17% Similarity=0.438 Sum_probs=25.2
Q ss_pred CcccccccccCCCCccccccCCCCCcchHHHHHHHH
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYI 73 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~ 73 (237)
...|.+|...+.....-..-..||+.||..|....+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 447999998885433222356799999999976543
No 127
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=51.62 E-value=11 Score=20.35 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.7
Q ss_pred cCcccCccccccccccccc-ccCCCCC
Q 026529 149 VKKAQCPKCKQWFCFQCKL-AWHAGYR 174 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 174 (237)
...+.|..++..+|..|.. ..|.+++
T Consensus 12 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 12 RLKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp SCCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eeeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 4678899999999999987 6787764
No 128
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=51.49 E-value=5.9 Score=24.78 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=23.2
Q ss_pred cccccccccCCCCccccccCCCCCcchHHHHHH
Q 026529 39 FTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAK 71 (237)
Q Consensus 39 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 71 (237)
..|.+|...+.....-..-..||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 379999988754322223457999999999754
No 129
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=51.45 E-value=7.7 Score=23.64 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=14.9
Q ss_pred ccCCCCCcceeccCCCCceeec-CccE
Q 026529 199 TRCPGCGNCIERKKGCRIMFCR-FIFL 224 (237)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~c 224 (237)
=.|..|+..++...+ .-|.|+ ||+-
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~~CG~R 47 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCRECGHR 47 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCSSSCCC
T ss_pred EECCCCCCeeecCCC-CceECCCCCcE
Confidence 466666666665544 456665 6643
No 130
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=50.76 E-value=6.7 Score=27.73 Aligned_cols=46 Identities=24% Similarity=0.553 Sum_probs=31.0
Q ss_pred ccCCCCcCCC---CCCccccccCCChhHHHHHHHHHHHHhhcCCCcccCCCCCCCceeecc
Q 026529 85 IECPGLHCEQ---FLDPLACKPTIPSSLFIKWCDHLCEDYVLGLERSYCPNRNCMAVMVNE 142 (237)
Q Consensus 85 i~CP~~~C~~---~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~ 142 (237)
..||. |+. .+....++.+|.++.++ +...++..|++|+|.-++...
T Consensus 2 ~~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~~ 50 (130)
T 2hu9_A 2 MRCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFNE 50 (130)
T ss_dssp CBCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEECS
T ss_pred CcCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEECC
Confidence 35988 885 45666777766655322 333568899999998766643
No 131
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=50.71 E-value=6.4 Score=26.26 Aligned_cols=17 Identities=18% Similarity=0.675 Sum_probs=14.7
Q ss_pred cchHHHHHHHHHhcccc
Q 026529 63 PFCQDCTAKYIEVKVRD 79 (237)
Q Consensus 63 ~fC~~Cl~~~~~~~i~~ 79 (237)
-||+.||.+|+..+-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999887765
No 132
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=50.68 E-value=9.1 Score=23.49 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=23.5
Q ss_pred ccCCCCCCCceeeccccccCCcCcccCccccccccc
Q 026529 128 SYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
+.|| +|...-..-... ...+.|..|+...|.
T Consensus 8 VKCp--~C~niq~VFShA---~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCP--DCEHEQVIFDHP---STIVKCIICGRTVAE 38 (66)
T ss_dssp EECT--TTCCEEEEESSC---SSCEECSSSCCEEEE
T ss_pred EECC--CCCCceEEEecC---ceEEEcccCCCEEee
Confidence 7799 998765554443 578999999998874
No 133
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=50.29 E-value=6.5 Score=26.16 Aligned_cols=17 Identities=29% Similarity=0.833 Sum_probs=14.4
Q ss_pred cchHHHHHHHHHhcccc
Q 026529 63 PFCQDCTAKYIEVKVRD 79 (237)
Q Consensus 63 ~fC~~Cl~~~~~~~i~~ 79 (237)
-||+.||.+|+..+..+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999887654
No 134
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=48.85 E-value=10 Score=26.43 Aligned_cols=35 Identities=26% Similarity=0.670 Sum_probs=25.9
Q ss_pred CcccCCCCCCCceeeccccccCCcCcccCcccccccccccccc
Q 026529 126 ERSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCFQCKLA 168 (237)
Q Consensus 126 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 168 (237)
....|. .|+..|... .....|..||..||..|-..
T Consensus 68 ~~~~C~--~C~~~Fs~~------~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCM--ACGKGFSVT------VRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCT--TTCCBCCSS------SCCEECTTTCCEECGGGSCE
T ss_pred CCCCCc--CcCCccccc------cccccCCCCCeEEChHHhCC
Confidence 346787 788765432 36778999999999999653
No 135
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=48.63 E-value=13 Score=21.90 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=20.9
Q ss_pred CcccCCCCCcceeccCCCCceeec---CccEE
Q 026529 197 NWTRCPGCGNCIERKKGCRIMFCR---FIFLS 225 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~---C~~cf 225 (237)
.+-.||.|+..++-.. ..++|. ||.-|
T Consensus 9 ~iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 3468999999988777 678887 87544
No 136
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=48.14 E-value=12 Score=22.80 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=22.4
Q ss_pred CcccCCCCCcceeccCCCCceeecCccEEEecccC
Q 026529 197 NWTRCPGCGNCIERKKGCRIMFCRFIFLSLCLCIF 231 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~C~~cf~c~~~~ 231 (237)
...+|..|+..+... -+.|+||.-||=.-.+
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HR~ 44 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKCKCGSTFCGSHRY 44 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEECTTSCEECSSSCS
T ss_pred cCCcChhhCCccccc----CeEeecCCEecccCCC
Confidence 447899999987765 3688998777744443
No 137
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=47.14 E-value=5.7 Score=22.54 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=22.6
Q ss_pred cCcccCcccccccccccccccCCCCC
Q 026529 149 VKKAQCPKCKQWFCFQCKLAWHAGYR 174 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~~~H~~~~ 174 (237)
...+.|..|+..+|..|....|.++.
T Consensus 16 ~l~lfC~~~~~~iC~~C~~~~H~~H~ 41 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQLNAHKDHQ 41 (50)
T ss_dssp BCCEEETTTTEEECHHHHHTTTTTCC
T ss_pred CEEEEeCCCCEEEecccCCCcCCCCc
Confidence 57789999999999999888888775
No 138
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.44 E-value=12 Score=22.71 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=23.5
Q ss_pred ccCCCCCCCceeeccccccCCcCcccCccccccccc
Q 026529 128 SYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCF 163 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (237)
+.|| +|...-..-... ...+.|..|+...|.
T Consensus 16 VkCp--~C~~~q~VFSha---~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVFSHP---ATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEESSC---SSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEEecC---CeEEEccCcCCEEec
Confidence 7899 998765554333 578999999998874
No 139
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=45.99 E-value=19 Score=21.63 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=27.4
Q ss_pred ccCCCCcCCCCCCccccccCCChhHHHHHHHHHHHHhh
Q 026529 85 IECPGLHCEQFLDPLACKPTIPSSLFIKWCDHLCEDYV 122 (237)
Q Consensus 85 i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 122 (237)
-.||. |+.......=..+-++|-+.+|+..+...+-
T Consensus 19 ~~CP~--CG~~T~~~hParfSp~Dky~~yR~~~kk~~~ 54 (60)
T 2apo_B 19 EICPK--CGEKTVIPKPPKFSLEDRWGKYRRMLKRALK 54 (60)
T ss_dssp SBCSS--SCSBCBCCCCCCCCTTCTTHHHHHHHHHHHH
T ss_pred ccCcC--CCCcCCCCCCCCCCCCcchHHHHHHHHHHhc
Confidence 45888 9987766666777788889999888776643
No 140
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=45.69 E-value=11 Score=28.08 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.8
Q ss_pred ccCCCCCcceeccCCCCceeec-Ccc
Q 026529 199 TRCPGCGNCIERKKGCRIMFCR-FIF 223 (237)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (237)
-.|+.|+.+..+.+ ++|.|. ||.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCC
T ss_pred ecccccCCceEECC--CEEECCCCCC
Confidence 58999999998876 999996 973
No 141
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=43.62 E-value=3.3 Score=21.94 Aligned_cols=17 Identities=18% Similarity=0.673 Sum_probs=13.0
Q ss_pred CCcccccccccCCCCcc
Q 026529 37 GTFTCDICIEPMSVNNK 53 (237)
Q Consensus 37 ~~~~C~IC~~~~~~~~~ 53 (237)
..|.||+|+.++...+.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 35899999998866543
No 142
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.58 E-value=16 Score=22.95 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCcccCCCCCcceeccCCCCceeecCccEEEecccC
Q 026529 196 MNWTRCPGCGNCIERKKGCRIMFCRFIFLSLCLCIF 231 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~C~~cf~c~~~~ 231 (237)
....+|..|+..+... -+.|+||.-||=.--+
T Consensus 23 ~~~~RC~~C~kkvgL~----~f~CrCg~~FCs~HRy 54 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT----GFKCRCGSTFCGTHRY 54 (74)
T ss_dssp CCCCBCSSSCCBCTTT----CEECTTSCEECTTTCS
T ss_pred ccCccchhhcCccccc----ceEeccCCEeccccCC
Confidence 4457899999888776 3788998777644333
No 143
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=42.60 E-value=13 Score=21.09 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=20.3
Q ss_pred cCCCCCCCceeeccccccCCcCcccCcccccccc
Q 026529 129 YCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFC 162 (237)
Q Consensus 129 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C 162 (237)
.|. .|+..+..++.. .-+.++||-||+..=
T Consensus 5 ~C~--rCg~~fs~~el~--~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 5 RCG--KCWKTFTDEQLK--VLPGVRCPYCGYKII 34 (48)
T ss_dssp CCC--CTTTTCCCCCSC--CCSSSCCTTTCCSCE
T ss_pred Eee--ccCCCccHHHHh--hCCCcccCccCcEEE
Confidence 355 777777666543 357788988888653
No 144
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.25 E-value=38 Score=21.23 Aligned_cols=63 Identities=27% Similarity=0.498 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCcccccc
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKP 103 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~ 103 (237)
+.....| ||-........++.-..|...|...|+.-...... ......||. |.....+..++.
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~---~~~~~~C~~--C~~~~~~~~~K~ 71 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV---DIDIYHCPD--CEAVFGPSIMKN 71 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHT---TCSBBCCTT--TTTTSCSCBCCC
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccccc---CCCeEECCC--cccccCCCceee
Confidence 3456678 89877643445555667888999999864332221 235688998 987665555543
No 145
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=42.17 E-value=11 Score=24.58 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=23.6
Q ss_pred CcccccccccCCCCccccccCCCCCcchHHHHHH
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAK 71 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 71 (237)
...|.+|...|.....-..-..||..||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3479999888854332223457899999998754
No 146
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=41.84 E-value=28 Score=23.80 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=20.0
Q ss_pred CCcccCCCCCCCceeeccccccCCcCcc-cCcccccc
Q 026529 125 LERSYCPNRNCMAVMVNECEEIGRVKKA-QCPKCKQW 160 (237)
Q Consensus 125 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~-~C~~C~~~ 160 (237)
+...+|. +|+..+.... ... .||.|+..
T Consensus 71 p~~~~C~--~CG~~~e~~~------~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 71 KVELECK--DCSHVFKPNA------LDYGVCEKCHSK 99 (119)
T ss_dssp CCEEECS--SSSCEECSCC------STTCCCSSSSSC
T ss_pred cceEEcC--CCCCEEeCCC------CCCCcCccccCC
Confidence 4468898 9998887642 445 78888764
No 147
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=41.03 E-value=20 Score=21.85 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=25.5
Q ss_pred CCCCcccccccccCCCCccccccC-CCCCcchHHHHHH
Q 026529 35 IDGTFTCDICIEPMSVNNKFKNNN-LCTHPFCQDCTAK 71 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~ 71 (237)
+.+...|++|..++.+.+.++.-- .|.-.|...|+.-
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 355678999999886555555555 7888899999864
No 148
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=40.67 E-value=20 Score=23.24 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=21.8
Q ss_pred CCcccCCCCCcceeccCCCCceeecCccEEEecc
Q 026529 196 MNWTRCPGCGNCIERKKGCRIMFCRFIFLSLCLC 229 (237)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~C~~cf~c~~ 229 (237)
....+|..|+..+-.. +-+.|+||.-||=.-
T Consensus 23 ~~~~rC~~C~kkvgl~---~~f~CrCg~~FC~~H 53 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA---TSFECRCGNNFCASH 53 (85)
T ss_dssp CCCCBCSSSCCBCSSS---SCEECTTCCEECTTT
T ss_pred ccCccchhhCCeeccc---CCeEcCCCCEecccC
Confidence 3447899999887664 247888887776433
No 149
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=38.87 E-value=19 Score=21.57 Aligned_cols=28 Identities=25% Similarity=0.629 Sum_probs=18.2
Q ss_pred hcCCCcccCCCCCCCceeeccccccCCcCcccCcccccc
Q 026529 122 VLGLERSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQW 160 (237)
Q Consensus 122 ~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 160 (237)
+..+.+..|| .|+.+..+. ..|+.||++
T Consensus 25 l~~p~l~~c~--~cGe~~~~H---------~vc~~CG~Y 52 (60)
T 3v2d_5 25 LTPPTLVPCP--ECKAMKPPH---------TVCPECGYY 52 (60)
T ss_dssp CCCCCCEECT--TTCCEECTT---------SCCTTTCEE
T ss_pred ccCCceeECC--CCCCeecce---------EEcCCCCcC
Confidence 3456678888 787765444 347777754
No 150
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=37.93 E-value=12 Score=25.97 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCcccccccccCCCCccccccCCCCCcchHHHHHHHHH
Q 026529 37 GTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIE 74 (237)
Q Consensus 37 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~ 74 (237)
....|..|-..|.....-..-..||..||..|....+.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~ 55 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN 55 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC---
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC
Confidence 34589999888854322223567999999999776543
No 151
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=37.41 E-value=22 Score=25.24 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHHHhh-cC--------CCcccCCCCCCCceeeccc
Q 026529 106 PSSLFIKWCDHLCEDYV-LG--------LERSYCPNRNCMAVMVNEC 143 (237)
Q Consensus 106 ~~~~~~~~~~~~~~~~~-~~--------~~~~~Cp~~~C~~~~~~~~ 143 (237)
.++.+......+.+..+ .. +...+|. +|++.+....
T Consensus 40 ~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~--~CG~~~~~~~ 84 (139)
T 3a43_A 40 AEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCR--NCNYEWKLKE 84 (139)
T ss_dssp CHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEET--TTCCEEEGGG
T ss_pred hHHHHHHHHHHHHcCCcccCCEEEEEecCCcEECC--CCCCEEeccc
Confidence 44555554444444333 22 4568999 9999887655
No 152
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=37.36 E-value=20 Score=18.99 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=17.2
Q ss_pred cCCCCCcc---eeccCCCCceeec-CccEE
Q 026529 200 RCPGCGNC---IERKKGCRIMFCR-FIFLS 225 (237)
Q Consensus 200 ~CP~C~~~---iek~~GCnhm~C~-C~~cf 225 (237)
.||.|+.+ +.+..+=-.+.|. ||+.+
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 48888864 4455565668886 88643
No 153
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=35.91 E-value=25 Score=21.05 Aligned_cols=28 Identities=21% Similarity=0.668 Sum_probs=17.7
Q ss_pred hcCCCcccCCCCCCCceeeccccccCCcCcccCcccccc
Q 026529 122 VLGLERSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQW 160 (237)
Q Consensus 122 ~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 160 (237)
+..+....|| .|+.... +...|+.||++
T Consensus 25 l~~p~l~~c~--~cG~~~~---------pH~vc~~CG~Y 52 (60)
T 2zjr_Z 25 LTAPNLTECP--QCHGKKL---------SHHICPNCGYY 52 (60)
T ss_dssp CCCCCCEECT--TTCCEEC---------TTBCCTTTCBS
T ss_pred ccCCCceECC--CCCCEeC---------CceEcCCCCcC
Confidence 3456678888 7877743 33447777754
No 154
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=35.06 E-value=23 Score=25.85 Aligned_cols=56 Identities=18% Similarity=0.346 Sum_probs=33.2
Q ss_pred hhcCCCCcccccccccCCCCccccccC--CCCCcchHHHHHHHHHhcccc--CCcccccCCCCcCC
Q 026529 32 LEDIDGTFTCDICIEPMSVNNKFKNNN--LCTHPFCQDCTAKYIEVKVRD--NNTAKIECPGLHCE 93 (237)
Q Consensus 32 ~~~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~~~~i~~--~~~~~i~CP~~~C~ 93 (237)
.+++.-...|.||-+.- + ++.-- .|...||.+||...+-....+ ....+-.|-. |.
T Consensus 73 ~DeDG~~~yC~wC~~Gg---~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~--C~ 132 (159)
T 3a1b_A 73 YDDDGYQSYCTICCGGR---E-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYM--CG 132 (159)
T ss_dssp BCTTSSBSSCTTTSCCS---E-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTT--TC
T ss_pred cCCCCCcceeeEecCCC---e-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEe--cC
Confidence 34445567899998653 2 22122 588999999999887442211 1234556655 55
No 155
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.36 E-value=21 Score=21.64 Aligned_cols=40 Identities=20% Similarity=0.574 Sum_probs=27.5
Q ss_pred cccCCCCCCCceeeccccccCCcCcccCcccccccccccccccCCCCCChh
Q 026529 127 RSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCFQCKLAWHAGYRCEE 177 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~ 177 (237)
...|..++|.... ..-+.|..|+..||..-+-+ ..+.|..
T Consensus 12 ~~~Cs~~~Ck~~~---------ll~f~C~~C~~~FC~~HR~~--e~H~C~~ 51 (63)
T 1x4v_A 12 TNKCERAGCRQRE---------MMKLTCERCSRNFCIKHRHP--LDHDCSG 51 (63)
T ss_dssp CCCCCSTTCCCCC---------SSCCBCSSSCCBCCHHHHST--TSSCCCS
T ss_pred CCCCCccCCCCCC---------ccceECCCCCcccCcccCCc--cCCcCCC
Confidence 3578888887651 24568999999999987753 2345653
No 156
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=33.93 E-value=19 Score=25.90 Aligned_cols=33 Identities=24% Similarity=0.524 Sum_probs=19.2
Q ss_pred CcccCCCCCC-C------ceeeccccccCCcCcccCccccccc
Q 026529 126 ERSYCPNRNC-M------AVMVNECEEIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 126 ~~~~Cp~~~C-~------~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
+...||||+| . ..|...+.. ...++|..|...+
T Consensus 104 gvl~C~Np~CITn~E~v~s~F~v~~~~---~~~lrC~YCe~~~ 143 (149)
T 2yww_A 104 GTLKCTNPNCITNKEKVRGKFKIESKN---PLKIRCYYCEKFL 143 (149)
T ss_dssp SSSCCSCTTSGGGTSCCCCEEEEEEET---TEEEEETTTCCBC
T ss_pred CeEEcCCCCCCcCCcccccEEEEEeCC---CCEEEeeCCCcCh
Confidence 3588999999 2 222222211 2457787777654
No 157
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=33.13 E-value=19 Score=28.72 Aligned_cols=24 Identities=38% Similarity=0.872 Sum_probs=19.2
Q ss_pred ccCCCCCcceecc--CCCCceeec-Cc
Q 026529 199 TRCPGCGNCIERK--KGCRIMFCR-FI 222 (237)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (237)
++||.|+.+|++. +|=+--.|. |.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 7899999999986 676666775 64
No 158
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=33.09 E-value=17 Score=29.05 Aligned_cols=24 Identities=29% Similarity=0.703 Sum_probs=19.1
Q ss_pred ccCCCCCcceecc--CCCCceeec-Cc
Q 026529 199 TRCPGCGNCIERK--KGCRIMFCR-FI 222 (237)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (237)
++||.|+.+|++. +|=+-..|. |.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 7899999999997 676666674 64
No 159
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=33.01 E-value=17 Score=29.10 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=18.5
Q ss_pred ccCCCCCcceecc--CCCCceeec-Cc
Q 026529 199 TRCPGCGNCIERK--KGCRIMFCR-FI 222 (237)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (237)
++||.|+.+|++. +|=+--.|. |.
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 6999999999985 676666664 53
No 160
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=32.41 E-value=13 Score=20.72 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=21.3
Q ss_pred cCcccCcccccccccccc-cccCCCCC
Q 026529 149 VKKAQCPKCKQWFCFQCK-LAWHAGYR 174 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~-~~~H~~~~ 174 (237)
...+.|..|+..+|..|. ...|.+++
T Consensus 16 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 16 KINIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp BCCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred cccEEcCCCCeeEcccccCCCcCCCCc
Confidence 467899999999999997 45788764
No 161
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=32.37 E-value=17 Score=28.78 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=18.6
Q ss_pred ccCCCCCcceecc--CCCCceeec-Cc
Q 026529 199 TRCPGCGNCIERK--KGCRIMFCR-FI 222 (237)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (237)
++||.|+.+|++. +|=+-..|. |.
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 6899999999987 676666664 63
No 162
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=32.16 E-value=15 Score=20.97 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.1
Q ss_pred cCcccCccccccccccccc-ccCCCCC
Q 026529 149 VKKAQCPKCKQWFCFQCKL-AWHAGYR 174 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 174 (237)
...+.|..|+..+|..|.. ..|.+++
T Consensus 17 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 43 (53)
T 2did_A 17 ALSLFCYEDQEAVCLICAISHTHRAHT 43 (53)
T ss_dssp BCCEEESSSCSEECHHHHTSSTTTTSC
T ss_pred eeeEEeCCCCeEEeccccCCCCCCCCc
Confidence 4678899999999999987 6788775
No 163
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=32.12 E-value=18 Score=28.86 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=18.6
Q ss_pred ccCCCCCcceecc--CCCCceeec-Cc
Q 026529 199 TRCPGCGNCIERK--KGCRIMFCR-FI 222 (237)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (237)
++||.|+..|++. +|=+--.|. |.
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 7899999999987 676666664 53
No 164
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=31.85 E-value=13 Score=22.86 Aligned_cols=27 Identities=15% Similarity=0.389 Sum_probs=23.2
Q ss_pred cCcccCcccccccccccccccCCCCCC
Q 026529 149 VKKAQCPKCKQWFCFQCKLAWHAGYRC 175 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~~~H~~~~C 175 (237)
...+.|..|+..+|..|....|.++.-
T Consensus 27 ~l~lfC~~d~~~iC~~C~~~~H~~H~~ 53 (72)
T 2csv_A 27 TMELFCQTDQTCICYLCMFQEHKNHST 53 (72)
T ss_dssp BCCEEESSSCCEECHHHHHTTTSSSCE
T ss_pred ceEEEeCCCCeEEccccCCCCCCCCCE
Confidence 477889999999999999888988754
No 165
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=31.11 E-value=35 Score=20.45 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=26.7
Q ss_pred ccCCCCcCCCCCCccccccCCChhHHHHHHHHHHHHhh
Q 026529 85 IECPGLHCEQFLDPLACKPTIPSSLFIKWCDHLCEDYV 122 (237)
Q Consensus 85 i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 122 (237)
-.||. |+.......=..+-++|-+.+|+..+...+-
T Consensus 18 ~~CP~--CG~~t~~ahParfSP~Dky~~yR~~lKk~~~ 53 (60)
T 2aus_D 18 ETCPV--CGEKTKVAHPPRFSPEDPYGEYRRRLKRELL 53 (60)
T ss_dssp SBCTT--TCSBCEESSCCCCCSCCTTHHHHHHHHHHHT
T ss_pred ccCcC--CCCccCCCCCCCCCCCCchHHHHHHHHHHhc
Confidence 34887 8877666666677778889999888777653
No 166
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=30.73 E-value=18 Score=23.05 Aligned_cols=28 Identities=14% Similarity=0.440 Sum_probs=18.1
Q ss_pred cccCCCCCCCceeeccccccCCcCcccCcccccc
Q 026529 127 RSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQW 160 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 160 (237)
.++|. +|+......... .-.+|+.|+..
T Consensus 37 ~I~Cn--DC~~~s~v~~h~----lg~kC~~C~Sy 64 (79)
T 2k2d_A 37 DILCN--DCNGRSTVQFHI----LGMKCKICESY 64 (79)
T ss_dssp EEEES--SSCCEEEEECCT----TCCCCTTTSCC
T ss_pred EEECC--CCCCCccCCcee----ecccCcCCCCc
Confidence 37888 998877665431 33478877654
No 167
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.71 E-value=17 Score=21.46 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.1
Q ss_pred cCcccCccccccccccccc-ccCCCCC
Q 026529 149 VKKAQCPKCKQWFCFQCKL-AWHAGYR 174 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 174 (237)
...+.|..++..+|..|.. ..|.+++
T Consensus 23 ~L~lfC~~d~~~iC~~C~~s~eH~~H~ 49 (59)
T 2yrg_A 23 KLLLFCQEDGKVICWLCERSQEHRGHH 49 (59)
T ss_dssp BCCEEETTTCSEECHHHHTSTTTTTCC
T ss_pred eeeeecCCCCcEEecccCCCCcCCCCc
Confidence 4678899999999999987 6888774
No 168
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=30.68 E-value=1.1e+02 Score=19.80 Aligned_cols=93 Identities=14% Similarity=0.249 Sum_probs=49.6
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccCCChhHHHHHHH
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPTIPSSLFIKWCD 115 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~~ 115 (237)
...+.|++|-..+... .=|..++.... ...++.|+. |+..+... ..+.+-
T Consensus 5 ~~~~~C~~C~~~f~~~---------------~~l~~H~~~h~---~~~~~~C~~--C~~~f~~~--------~~l~~H-- 54 (124)
T 2dlq_A 5 SSGVECPTCHKKFLSK---------------YYLKVHNRKHT---GEKPFECPK--CGKCYFRK--------ENLLEH-- 54 (124)
T ss_dssp CSSCCCTTTCCCCSSH---------------HHHHHHHHHHS---SCCSCBCTT--TCCBCSSH--------HHHHHH--
T ss_pred CCCCCCCCCCCcCCCH---------------HHHHHHHHhCC---CCCCeECCC--CCchhcCH--------HHHHHH--
Confidence 4568899987666432 22445554332 235788988 88755421 111111
Q ss_pred HHHHHhh-cCCCcccCCCCCCCceeeccccc------cCCcCcccCccccccc
Q 026529 116 HLCEDYV-LGLERSYCPNRNCMAVMVNECEE------IGRVKKAQCPKCKQWF 161 (237)
Q Consensus 116 ~~~~~~~-~~~~~~~Cp~~~C~~~~~~~~~~------~~~~~~~~C~~C~~~~ 161 (237)
+..... .......|+ .|+..+...... ......+.|+.|++.|
T Consensus 55 -~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 104 (124)
T 2dlq_A 55 -EARNCMNRSEQVFTCS--VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104 (124)
T ss_dssp -HHHCCCCSCCCCEECS--SSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEE
T ss_pred -HhhhhcCCCCCCeECC--CCCCccCCHHHHHHHHHHcCCCCCccCCCccchh
Confidence 111101 123346788 788776653321 1124567888888876
No 169
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=30.53 E-value=24 Score=21.95 Aligned_cols=13 Identities=23% Similarity=0.787 Sum_probs=8.5
Q ss_pred CCcccCCCCCccee
Q 026529 196 MNWTRCPGCGNCIE 209 (237)
Q Consensus 196 ~~~k~CP~C~~~ie 209 (237)
..|++|| ||..+.
T Consensus 19 ~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 19 AKTRKCV-CGRTVN 31 (71)
T ss_dssp CSEEEET-TTEEEE
T ss_pred CcEEECC-CCCeee
Confidence 4567777 776654
No 170
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.20 E-value=16 Score=28.13 Aligned_cols=35 Identities=29% Similarity=0.593 Sum_probs=24.4
Q ss_pred CcccccccccCCCCccccccCCCCCcchHHHHHHH
Q 026529 38 TFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKY 72 (237)
Q Consensus 38 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 72 (237)
...|.+|...|.....-..-..||+.||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 35899998887543222234579999999997654
No 171
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=29.52 E-value=32 Score=19.38 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=19.1
Q ss_pred ccCCCCCCCceeecccccc----CCcCcccCcccccc
Q 026529 128 SYCPNRNCMAVMVNECEEI----GRVKKAQCPKCKQW 160 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~----~~~~~~~C~~C~~~ 160 (237)
-.|+ .|++++....++. .-...++||.|+..
T Consensus 5 y~C~--vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCN--VCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEET--TTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECC--CCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 3577 8888877544321 11345789999863
No 172
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=29.51 E-value=16 Score=23.15 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=22.9
Q ss_pred cCcccCccccccccccccc-ccCCCCCC
Q 026529 149 VKKAQCPKCKQWFCFQCKL-AWHAGYRC 175 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~C 175 (237)
...+.|..|+..+|..|.. ..|.++.-
T Consensus 28 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 55 (84)
T 2dja_A 28 KVNMYCVSDDQLICALCKLVGRHRDHQV 55 (84)
T ss_dssp CCCEEETTTTEEECHHHHHTSTTTTCCB
T ss_pred cccEEcCCCCceEcccCcCCCCCCCCCc
Confidence 4778999999999999988 78888753
No 173
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=28.63 E-value=14 Score=22.87 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=11.7
Q ss_pred CCcccCCCCCccee
Q 026529 196 MNWTRCPGCGNCIE 209 (237)
Q Consensus 196 ~~~k~CP~C~~~ie 209 (237)
...+.||.|+.++.
T Consensus 7 ~~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 7 TITVNCPTCGKTVV 20 (68)
T ss_dssp CCEEECTTTCCEEE
T ss_pred CCcCcCCCCCCccc
Confidence 45689999999986
No 174
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.55 E-value=44 Score=21.59 Aligned_cols=33 Identities=24% Similarity=0.674 Sum_probs=25.3
Q ss_pred cccCCCCCCCceeeccccccCCcCcccCcccccccccccccc
Q 026529 127 RSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCFQCKLA 168 (237)
Q Consensus 127 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 168 (237)
...|..++|.... ..-+.|..|+..||..-+-+
T Consensus 25 ~~~C~~~~Ck~~~---------~l~f~C~~C~~~FC~~HR~~ 57 (86)
T 1wfe_A 25 SYSCSFKGCTDVE---------LVAVICPYCEKNFCLRHRHQ 57 (86)
T ss_dssp CEECCSTTCCCEE---------SSCEECTTTCCEECGGGCST
T ss_pred CCCCCCcCCCCCC---------ccceECCCCCcccccccCCc
Confidence 4679888898762 14567999999999987754
No 175
>4fyy_B Aspartate carbamoyltransferase regulatory chain; pyrimidine nucleotide biosynthesis, feedback inhibition, all transferase; HET: UTP CTP; 1.94A {Escherichia coli} PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G* 1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B* 1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B 1tug_B* 1xjw_B* ...
Probab=28.17 E-value=25 Score=25.52 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=19.7
Q ss_pred CcccCCCCCCCceeeccccc-----cCCcCcccCccccccc
Q 026529 126 ERSYCPNRNCMAVMVNECEE-----IGRVKKAQCPKCKQWF 161 (237)
Q Consensus 126 ~~~~Cp~~~C~~~~~~~~~~-----~~~~~~~~C~~C~~~~ 161 (237)
+.+.||||+|-.-..+.... ......++|..|...|
T Consensus 105 gvi~C~Np~CIT~~E~v~~~f~v~~~~~~~~~rC~YCe~~~ 145 (153)
T 4fyy_B 105 NVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEF 145 (153)
T ss_dssp SSCCCSCTTBTTTTSSCCCEEEEEECSSSEEEEETTTCCEE
T ss_pred CeEECCCCCcccCCCCCCCEEEEEEcCCCCEEEeeCCCCEe
Confidence 35889999996432211110 0012357787777654
No 176
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=27.84 E-value=20 Score=21.27 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=21.9
Q ss_pred cCcccCccccccccccccc-ccCCCCC
Q 026529 149 VKKAQCPKCKQWFCFQCKL-AWHAGYR 174 (237)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~~ 174 (237)
...+.|..|+..+|..|.. ..|.++.
T Consensus 18 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 44 (64)
T 2d8u_A 18 KINIYCLTCEVPTCSMCKVFGIHKACE 44 (64)
T ss_dssp CCCSEESSSCCCCCSHHHHSSSTTSSC
T ss_pred ccceEcCcCCceeCccccCCCcCCCCC
Confidence 5778999999999999986 4788764
No 177
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=27.70 E-value=22 Score=19.28 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=11.7
Q ss_pred hCCcccCCCCCcceec
Q 026529 195 KMNWTRCPGCGNCIER 210 (237)
Q Consensus 195 ~~~~k~CP~C~~~iek 210 (237)
......||+|+..|.-
T Consensus 6 ~~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 6 AEDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCCEEECTTTCCEEEG
T ss_pred cCCCcccccccCcCCc
Confidence 3445789999998754
No 178
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=27.45 E-value=41 Score=31.15 Aligned_cols=59 Identities=22% Similarity=0.559 Sum_probs=39.8
Q ss_pred CCCcccccccccCCCCcc------ccccCCCC--------------------CcchHHHHHHHHHhccccCCcccccCCC
Q 026529 36 DGTFTCDICIEPMSVNNK------FKNNNLCT--------------------HPFCQDCTAKYIEVKVRDNNTAKIECPG 89 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~------~~~~~~C~--------------------H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 89 (237)
.....|+-|+.++.++.. |+.-.+|| -.+|.+|.+.|-.-.-..=+.-++.||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 455689999999765432 33344454 2469999999976543332346899998
Q ss_pred CcCCCCC
Q 026529 90 LHCEQFL 96 (237)
Q Consensus 90 ~~C~~~~ 96 (237)
|+-.+
T Consensus 189 --CGP~l 193 (761)
T 3vth_A 189 --CGPSL 193 (761)
T ss_dssp --TSCCE
T ss_pred --cCCee
Confidence 98654
No 179
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.41 E-value=19 Score=27.86 Aligned_cols=34 Identities=26% Similarity=0.655 Sum_probs=24.3
Q ss_pred cccccccccCCCCccccccCCCCCcchHHHHHHH
Q 026529 39 FTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKY 72 (237)
Q Consensus 39 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 72 (237)
..|.+|...+.....-..-..||..||..|....
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4899998888543222235579999999997754
No 180
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=26.88 E-value=7.8 Score=30.30 Aligned_cols=34 Identities=32% Similarity=0.657 Sum_probs=19.8
Q ss_pred cccCCCCCCCce-e-eccccccCCcCcccCcccccccccc
Q 026529 127 RSYCPNRNCMAV-M-VNECEEIGRVKKAQCPKCKQWFCFQ 164 (237)
Q Consensus 127 ~~~Cp~~~C~~~-~-~~~~~~~~~~~~~~C~~C~~~~C~~ 164 (237)
..||| .|+.. + ...... -+..+.|+.|+..|=+.
T Consensus 34 n~yCP--nCG~~~l~~f~nN~--PVaDF~C~~C~EeyELK 69 (257)
T 4esj_A 34 QSYCP--NCGNNPLNHFENNR--PVADFYCNHCSEEFELK 69 (257)
T ss_dssp HCCCT--TTCCSSCEEC------CCCEEECTTTCCEEEEE
T ss_pred CCcCC--CCCChhhhhccCCC--cccccccCCcchhheec
Confidence 37899 88874 3 233332 24567888887776443
No 181
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=26.84 E-value=1.3e+02 Score=19.37 Aligned_cols=54 Identities=24% Similarity=0.509 Sum_probs=32.2
Q ss_pred CCcccccccccCCCCccccccCCCCCcchHHHHHHH--H------HhccccCCcccccCCCCcCCC
Q 026529 37 GTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKY--I------EVKVRDNNTAKIECPGLHCEQ 94 (237)
Q Consensus 37 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~--~------~~~i~~~~~~~i~CP~~~C~~ 94 (237)
....|.||-.-- ..+.+ .-.-|+-.|...||++. . +..........-.||. |..
T Consensus 14 ~D~~C~VC~~~t-~~~l~-pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~--Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVWT-AESLF-PCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHY--CDN 75 (89)
T ss_dssp CSCCCTTTCCCC-SSCCS-SCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTT--TCC
T ss_pred CCcccCcccccc-cccee-ccccccccccHhhcccccccccHHHHHHHHccCCCCCccccc--cch
Confidence 445899986333 32332 35568899999999986 1 1112111233468887 864
No 182
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.20 E-value=12 Score=18.78 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=12.4
Q ss_pred CCcccccccccCCCCc
Q 026529 37 GTFTCDICIEPMSVNN 52 (237)
Q Consensus 37 ~~~~C~IC~~~~~~~~ 52 (237)
..+.|+||....++.+
T Consensus 2 ~k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMD 17 (28)
T ss_dssp CCEECTTSSCEESSHH
T ss_pred CcccCccccccCcChH
Confidence 4689999998886543
No 183
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=26.05 E-value=29 Score=25.16 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=18.9
Q ss_pred CcccCCCCCC-C------ceeeccccccCCcCcccCccccccc
Q 026529 126 ERSYCPNRNC-M------AVMVNECEEIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 126 ~~~~Cp~~~C-~------~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (237)
+.+.||||+| . ..|...+.. ....++|..|...+
T Consensus 104 gv~~C~Np~CITn~E~v~s~F~v~~~~--~~~~lrC~YCe~~~ 144 (153)
T 2be7_D 104 NVFPCPNSNCITHGEPVTSSFSIKKTK--GNIGLKCKYCEKTF 144 (153)
T ss_dssp SSSCCSCTTCTTSSSSCCCCEEEEEET--TEEEEEETTTCCEE
T ss_pred CeEEcCCCCCCcCCcccccEEEEeecC--CCCEEEeeCCCCEe
Confidence 4588999999 2 122221111 02457787776654
No 184
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.89 E-value=37 Score=27.70 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=21.9
Q ss_pred ccCCCCCcc----eec----cCCCCceeec-CccEEEec
Q 026529 199 TRCPGCGNC----IER----KKGCRIMFCR-FIFLSLCL 228 (237)
Q Consensus 199 k~CP~C~~~----iek----~~GCnhm~C~-C~~cf~c~ 228 (237)
..||-||.. +.+ .+|=-+++|. |++.|-..
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~ 221 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV 221 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec
Confidence 689999972 223 4677789997 99988643
No 185
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=25.84 E-value=26 Score=26.41 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=18.7
Q ss_pred CcccCCCCCcceec-cCCCCceee-cCccEEE
Q 026529 197 NWTRCPGCGNCIER-KKGCRIMFC-RFIFLSL 226 (237)
Q Consensus 197 ~~k~CP~C~~~iek-~~GCnhm~C-~C~~cf~ 226 (237)
.-+.||+|+..+.- ...+.| +| +|++-|.
T Consensus 112 ~~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~ 142 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAKHYDRH-YCGKCHLTLK 142 (189)
T ss_dssp CSEECSTTCSSCEEEECSSCE-EETTTCCCBC
T ss_pred ccccCCccCCCccccCccCCC-ccCCceeEEE
Confidence 34899999976433 445444 88 4875543
No 186
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=25.70 E-value=65 Score=22.53 Aligned_cols=37 Identities=22% Similarity=0.559 Sum_probs=26.2
Q ss_pred hcCCCCcccccccccCCCCccccccCCCCCcchHHHHHHHH
Q 026529 33 EDIDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYI 73 (237)
Q Consensus 33 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~ 73 (237)
+++.....|.||.+.- + ++---.|-..||.+|+...+
T Consensus 52 d~Dg~~~~C~vC~dGG---~-LlcCd~Cpr~Fc~~Cl~~~l 88 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEGG---N-LICCDFCHNAFCKKCILRNL 88 (129)
T ss_dssp CTTSCBSSCTTTCCCS---E-EEECSSSSCEEEHHHHHHHT
T ss_pred CCCCCCCcCeecCCCC---e-eEecCCCchhhhHHHhCCCc
Confidence 3345566799998654 2 22345789999999999874
No 187
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=25.69 E-value=52 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.5
Q ss_pred CcccCCCCCcceeccCCCCceeec-Ccc
Q 026529 197 NWTRCPGCGNCIERKKGCRIMFCR-FIF 223 (237)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (237)
..+.||.|+.+.+...+=-.+.|. ||+
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~ 133 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRE 133 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSC
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCC
Confidence 569999999999887766778997 984
No 188
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.42 E-value=25 Score=21.00 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=23.7
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHH
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTA 70 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~ 70 (237)
.....|+||.....+...++.--.|...|...|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 45568999988775444455555677777777764
No 189
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=25.37 E-value=31 Score=17.70 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=9.1
Q ss_pred ccCCCCcCCCC
Q 026529 85 IECPGLHCEQF 95 (237)
Q Consensus 85 i~CP~~~C~~~ 95 (237)
++||.++|...
T Consensus 2 ~~CPtpGC~g~ 12 (31)
T 2jx1_A 2 LKCPTPGCDGS 12 (31)
T ss_dssp CSCSCTTCCSS
T ss_pred CcCCCCCcccc
Confidence 68999999864
No 190
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=25.30 E-value=5.3 Score=19.43 Aligned_cols=20 Identities=20% Similarity=0.629 Sum_probs=13.9
Q ss_pred cccccCCCCcCCCCCCcccccc
Q 026529 82 TAKIECPGLHCEQFLDPLACKP 103 (237)
Q Consensus 82 ~~~i~CP~~~C~~~~~~~~i~~ 103 (237)
.+.+.||. |.+.++...|..
T Consensus 4 ef~vqcpv--cqq~mpaahin~ 23 (29)
T 3vhs_A 4 EFQVQCPV--CQQMMPAAHINS 23 (29)
T ss_dssp -CEEECTT--TCCEEEGGGHHH
T ss_pred ceeeeChH--HHHhCcHHHHHH
Confidence 35788999 998777665543
No 191
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=24.46 E-value=1.3e+02 Score=19.79 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=10.3
Q ss_pred ccccCCCCcCCCCCCc
Q 026529 83 AKIECPGLHCEQFLDP 98 (237)
Q Consensus 83 ~~i~CP~~~C~~~~~~ 98 (237)
..+.||. |+..+..
T Consensus 7 dILaCP~--cK~pL~l 20 (97)
T 2k5r_A 7 HLLCSPD--TRQPLSL 20 (97)
T ss_dssp SSCCCCT--TSSCCEE
T ss_pred hheECCC--CCCcccc
Confidence 3579999 9986554
No 192
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=24.17 E-value=52 Score=19.54 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=22.0
Q ss_pred CcccCCCCCCCceeeccccccCCcCcccCcccccc
Q 026529 126 ERSYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQW 160 (237)
Q Consensus 126 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 160 (237)
+.+.|..+.|..++-+--.-+.....++|+-|+..
T Consensus 8 ~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 8 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp CCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCE
T ss_pred CCcccCCCCCCeEECCceEEECCCCEEEcccCCCc
Confidence 45778855698877654332222467888877654
No 193
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=23.99 E-value=14 Score=27.37 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=27.6
Q ss_pred ccccccccccccCC-CCCChhhhhccccchHHHHHHHHhCCcccCCCCCccee
Q 026529 158 KQWFCFQCKLAWHA-GYRCEESGNLRDRNDIAFGKLLEKMNWTRCPGCGNCIE 209 (237)
Q Consensus 158 ~~~~C~~C~~~~H~-~~~C~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~ie 209 (237)
-..||..|....|. -..|.+.... -...+.++......|+|++|++.-.
T Consensus 123 ~~wyc~~c~~~~~e~~f~~~dl~~q---l~~~~~~f~~~~e~rtc~~CG~~~~ 172 (176)
T 1zvf_A 123 IRWYCSHCRQVVHESELQMLDLGTQ---VKEAILDFENDVEKRTCFHCKTLNY 172 (176)
T ss_dssp EEEECTTTCCEEEEEECCSSSTTHH---HHHHHHHHHTCHHHHBCTTTCCBCC
T ss_pred eEEEcCCCCCEEEEEEEEEechhHh---HHHHHHHHhcChhhccCCCCCCcCC
Confidence 33445555554443 3456543321 1234555666667799999998754
No 194
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=23.89 E-value=64 Score=23.63 Aligned_cols=22 Identities=36% Similarity=0.856 Sum_probs=14.9
Q ss_pred cCCCCCCCceeeccccccCCcCcccCccccc
Q 026529 129 YCPNRNCMAVMVNECEEIGRVKKAQCPKCKQ 159 (237)
Q Consensus 129 ~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~ 159 (237)
.|+ .|+++.... .+. .||.|+.
T Consensus 140 ~C~--~CG~i~~~~------~p~-~CP~Cg~ 161 (170)
T 3pwf_A 140 ICP--ICGYTAVDE------APE-YCPVCGA 161 (170)
T ss_dssp ECT--TTCCEEESC------CCS-BCTTTCC
T ss_pred EeC--CCCCeeCCC------CCC-CCCCCCC
Confidence 388 899888722 122 7998875
No 195
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=23.86 E-value=19 Score=29.32 Aligned_cols=31 Identities=23% Similarity=0.552 Sum_probs=22.3
Q ss_pred hCCcccCCCCCcceeccC-CCCceeec-CccEE
Q 026529 195 KMNWTRCPGCGNCIERKK-GCRIMFCR-FIFLS 225 (237)
Q Consensus 195 ~~~~k~CP~C~~~iek~~-GCnhm~C~-C~~cf 225 (237)
+..|.+||+|+..|...+ .=|...|. |++++
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCC
Confidence 467899999999999884 22667885 87654
No 196
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=23.78 E-value=54 Score=20.57 Aligned_cols=43 Identities=19% Similarity=0.457 Sum_probs=29.4
Q ss_pred ccCCCCCCCceeeccccccCCcCcccCcccccccccccccccCCCCCChhhhhc
Q 026529 128 SYCPNRNCMAVMVNECEEIGRVKKAQCPKCKQWFCFQCKLAWHAGYRCEESGNL 181 (237)
Q Consensus 128 ~~Cp~~~C~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~ 181 (237)
..|...+|+..- ..-+.|..|+..||..-+.+ ..+.|.....|
T Consensus 15 ~~Cs~~~C~~~d---------flpf~C~~C~~~FC~~HR~~--e~H~C~~~~~~ 57 (75)
T 1wys_A 15 QHCQVQHCRQRD---------FLPFVCDGCSGIFCLEHRSK--DSHGCSEVNVV 57 (75)
T ss_dssp CCCSCTTTCCCS---------CCCEECTTTCCEECSTTCSS--GGGTCCCCSSC
T ss_pred CCcCcccCCCcc---------ceeeECcccCcCcCcccCCc--cccCCCCCccc
Confidence 578877787661 25678999999999977754 13466655444
No 197
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.69 E-value=30 Score=23.31 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=8.1
Q ss_pred CCCCccccccCCCh
Q 026529 94 QFLDPLACKPTIPS 107 (237)
Q Consensus 94 ~~~~~~~i~~~l~~ 107 (237)
.+++..+|...|+.
T Consensus 23 ~plta~ei~~~l~i 36 (105)
T 2gmg_A 23 GDYSPSELARILDM 36 (105)
T ss_dssp SCBCTTHHHHSSCC
T ss_pred CCCCHHHHHHHhCC
Confidence 45566666665554
No 198
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=23.66 E-value=71 Score=18.74 Aligned_cols=13 Identities=15% Similarity=0.575 Sum_probs=10.6
Q ss_pred ccccCCCCcCCCCCC
Q 026529 83 AKIECPGLHCEQFLD 97 (237)
Q Consensus 83 ~~i~CP~~~C~~~~~ 97 (237)
.|++|.. |+.++.
T Consensus 2 iPVRCFT--CGkvi~ 14 (55)
T 1ef4_A 2 IPVRCLS--CGKPVS 14 (55)
T ss_dssp CSSSCSC--TTSCCH
T ss_pred CCeecCC--CCCChh
Confidence 5899988 998765
No 199
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=23.36 E-value=19 Score=26.38 Aligned_cols=77 Identities=16% Similarity=0.330 Sum_probs=43.1
Q ss_pred CCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHhccccCCcccccCCCCcCCCCCCccccccCCChhHHHHHHH
Q 026529 36 DGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEVKVRDNNTAKIECPGLHCEQFLDPLACKPTIPSSLFIKWCD 115 (237)
Q Consensus 36 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~~~~ 115 (237)
.....| +|.........++.--.|...|...|+.--.... . ......||. |...-.......-|+.+.++....
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~--~-~~~~~~C~~--C~~~~~~~~~~~~l~~~~~~~l~~ 79 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEA--E-LIDEYVCPQ--CQSTEDAMTVLTPLTEKDYEGLKR 79 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHH--T-TCSSCCCHH--HHHHHHHHTTTSBCCHHHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhc--c-CccCeecCC--CcchhccccccccCCHHHHHHHHH
Confidence 456789 9987764334455556788899999985221111 1 234578887 874322222233455555555554
Q ss_pred HHH
Q 026529 116 HLC 118 (237)
Q Consensus 116 ~~~ 118 (237)
++.
T Consensus 80 il~ 82 (174)
T 2ri7_A 80 VLR 82 (174)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 200
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=23.34 E-value=14 Score=27.43 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=28.1
Q ss_pred ccccccccccccCC-CCCChhhhhccccchHHHHHHHHhCCcccCCCCCccee
Q 026529 158 KQWFCFQCKLAWHA-GYRCEESGNLRDRNDIAFGKLLEKMNWTRCPGCGNCIE 209 (237)
Q Consensus 158 ~~~~C~~C~~~~H~-~~~C~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~ie 209 (237)
-..||..|....|. -..|.+.... -...+.++......|+|++|++.-.
T Consensus 121 ~~wyc~~c~~~~~e~~f~~~dl~~~---l~~~~~~f~~~~~~rtc~~Cg~~~~ 170 (174)
T 1yfu_A 121 FEWYCDACGHLVHRVEVQLKSIVTD---LPPLFESFYASEDKRRCPHCGQVHP 170 (174)
T ss_dssp EEEECTTTCCEEEEEEECCSCHHHH---SHHHHHHHHTCHHHHBCTTTCCBCC
T ss_pred eEEEcCCCCCEEEEEEEEEechhHh---HHHHHHHHhcCHhhccCCCCCCcCC
Confidence 34445555554444 3356544321 1234555666667799999998754
No 201
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.32 E-value=27 Score=15.62 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=6.8
Q ss_pred ccCccccccc
Q 026529 152 AQCPKCKQWF 161 (237)
Q Consensus 152 ~~C~~C~~~~ 161 (237)
+.|+.|+..|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 5577777766
No 202
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=23.02 E-value=36 Score=19.83 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=16.7
Q ss_pred cccCCCCCCCce--e--ecc--ccccCCcCcccCccccccc
Q 026529 127 RSYCPNRNCMAV--M--VNE--CEEIGRVKKAQCPKCKQWF 161 (237)
Q Consensus 127 ~~~Cp~~~C~~~--~--~~~--~~~~~~~~~~~C~~C~~~~ 161 (237)
.+.|| .|+.- + ..+ ..+++....+.|..|++.+
T Consensus 15 ~~~Cp--~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCP--KCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCT--TTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECC--CCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 36788 88752 1 111 1122224566777777643
No 203
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=22.19 E-value=33 Score=23.02 Aligned_cols=55 Identities=16% Similarity=0.330 Sum_probs=34.5
Q ss_pred CCcccccccccCCCCccccccC-CCCCcchHHHHHHHHH--hcc-ccCCcccccCCCCcCCC
Q 026529 37 GTFTCDICIEPMSVNNKFKNNN-LCTHPFCQDCTAKYIE--VKV-RDNNTAKIECPGLHCEQ 94 (237)
Q Consensus 37 ~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~--~~i-~~~~~~~i~CP~~~C~~ 94 (237)
+...|+||...+.+...++.-- .|...|...|+.---. ..| .+ ......||. |..
T Consensus 2 ~~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~-~~~~~~Cp~--C~~ 60 (105)
T 2xb1_A 2 LVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTE-ASAVWACDL--CLK 60 (105)
T ss_dssp CCCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHC-TTEEECCHH--HHH
T ss_pred CcCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccC-CCCCEECcc--ccC
Confidence 4568999998875544554444 6888898888863221 112 12 235678887 764
No 204
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.11 E-value=34 Score=19.45 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=11.8
Q ss_pred CCcccCCCCCcceec
Q 026529 196 MNWTRCPGCGNCIER 210 (237)
Q Consensus 196 ~~~k~CP~C~~~iek 210 (237)
.+.+.||+|++..-.
T Consensus 10 ~~~~~CPrCn~~f~~ 24 (49)
T 2e72_A 10 GGRKICPRCNAQFRV 24 (49)
T ss_dssp SSCCCCTTTCCCCSS
T ss_pred CCceeCCcccccccc
Confidence 366899999997764
No 205
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=21.98 E-value=53 Score=27.67 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=25.5
Q ss_pred cCCCCcccccccccCCCCccccccC--CCCCcchHHHHHHHH
Q 026529 34 DIDGTFTCDICIEPMSVNNKFKNNN--LCTHPFCQDCTAKYI 73 (237)
Q Consensus 34 ~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~ 73 (237)
++.-...|.+|-+.- + ++.-- .|...||++|+...+
T Consensus 89 ~DG~~~yCr~C~~Gg---~-l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 89 DDGYQSYCSICCSGE---T-LLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSSSBCSCTTTCCCS---S-CEECCSTTCCCEECHHHHHHHT
T ss_pred CCCCcccceEcCCCC---e-EEEeCCCCCCcchHHHHHHHhc
Confidence 345567888888654 2 22233 788999999999987
No 206
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=21.92 E-value=11 Score=28.38 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=42.4
Q ss_pred cccccccccCCCCcc---ccccCCCCCcchHHHHHHHHH--hcccc-CCcccccCCCCcCCCCCCccccccCCChhHHHH
Q 026529 39 FTCDICIEPMSVNNK---FKNNNLCTHPFCQDCTAKYIE--VKVRD-NNTAKIECPGLHCEQFLDPLACKPTIPSSLFIK 112 (237)
Q Consensus 39 ~~C~IC~~~~~~~~~---~~~~~~C~H~fC~~Cl~~~~~--~~i~~-~~~~~i~CP~~~C~~~~~~~~i~~~l~~~~~~~ 112 (237)
..|+||-..+.+.+. ++.--.|...|...|+.-.-+ ..+.+ .......||. |...-+.. ++..+..++.+.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~--C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN--CTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT--TCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC--CCCCCCHH-HHHHHHHHHHHH
Confidence 469999888865542 555567888888888753211 11111 0113589998 98654432 444444444444
Q ss_pred HHHH
Q 026529 113 WCDH 116 (237)
Q Consensus 113 ~~~~ 116 (237)
+.+.
T Consensus 80 l~~v 83 (183)
T 3lqh_A 80 LKQV 83 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 207
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=21.44 E-value=91 Score=28.87 Aligned_cols=61 Identities=21% Similarity=0.467 Sum_probs=40.7
Q ss_pred CCCCcccccccccCCCCcc------ccccCCCC--------------------CcchHHHHHHHHHhccccCCcccccCC
Q 026529 35 IDGTFTCDICIEPMSVNNK------FKNNNLCT--------------------HPFCQDCTAKYIEVKVRDNNTAKIECP 88 (237)
Q Consensus 35 ~~~~~~C~IC~~~~~~~~~------~~~~~~C~--------------------H~fC~~Cl~~~~~~~i~~~~~~~i~CP 88 (237)
......|+-|+.++.++.. |+.-.+|| -.+|.+|-+.|-.-.-+.=+.-|+.||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 3556799999999765542 22233442 246999999998654433345689999
Q ss_pred CCcCCCCCC
Q 026529 89 GLHCEQFLD 97 (237)
Q Consensus 89 ~~~C~~~~~ 97 (237)
. |+-.+.
T Consensus 183 ~--CGP~l~ 189 (772)
T 4g9i_A 183 V--CGPSYR 189 (772)
T ss_dssp T--TSCCEE
T ss_pred c--CCceEE
Confidence 9 996443
No 208
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.30 E-value=30 Score=15.54 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=6.4
Q ss_pred ccCccccccc
Q 026529 152 AQCPKCKQWF 161 (237)
Q Consensus 152 ~~C~~C~~~~ 161 (237)
+.|+.|+..|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 4566777665
No 209
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=21.27 E-value=43 Score=24.58 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=8.5
Q ss_pred CcccCCCCCC
Q 026529 126 ERSYCPNRNC 135 (237)
Q Consensus 126 ~~~~Cp~~~C 135 (237)
+.+.||||+|
T Consensus 113 gvl~C~Np~C 122 (168)
T 1pg5_B 113 GILKCPNPYC 122 (168)
T ss_dssp SSSCCSCTTB
T ss_pred CeEEcCCCCc
Confidence 3588999999
No 210
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.14 E-value=31 Score=15.43 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=6.9
Q ss_pred ccCccccccc
Q 026529 152 AQCPKCKQWF 161 (237)
Q Consensus 152 ~~C~~C~~~~ 161 (237)
+.|+.|++.|
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 5577777766
No 211
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.94 E-value=31 Score=15.20 Aligned_cols=9 Identities=33% Similarity=1.006 Sum_probs=5.6
Q ss_pred cCccccccc
Q 026529 153 QCPKCKQWF 161 (237)
Q Consensus 153 ~C~~C~~~~ 161 (237)
.|+.|++.|
T Consensus 3 ~C~~C~k~f 11 (27)
T 1znf_A 3 KCGLCERSF 11 (27)
T ss_dssp BCSSSCCBC
T ss_pred cCCCCCCcC
Confidence 466666665
No 212
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=20.34 E-value=1.4e+02 Score=21.14 Aligned_cols=54 Identities=20% Similarity=0.472 Sum_probs=34.3
Q ss_pred cCCCCcccccccccCCCCccccccCCCCCcchHHHHHHHHHh----ccccCCcccccCCCCcCCC
Q 026529 34 DIDGTFTCDICIEPMSVNNKFKNNNLCTHPFCQDCTAKYIEV----KVRDNNTAKIECPGLHCEQ 94 (237)
Q Consensus 34 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~----~i~~~~~~~i~CP~~~C~~ 94 (237)
++.....|.+|.+.- + ++.--.|...||..|+...+.. .|.. ...+-.||. |..
T Consensus 59 ~Dg~~d~C~vC~~GG---~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~-p~~~W~C~~--C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGG---N-LICCDFCHNAFCKKCILRNLGRKELSTIMD-ENNQWYCYI--CHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCS---S-EEECSSSCCEEEHHHHHHHTCHHHHHHHHT-STTCCCCTT--TCC
T ss_pred CCCCCCeecccCCCC---c-EEeCCCCCCeeeHhhcCCCCChhhhhhccc-CCCCCEeec--ccC
Confidence 345567899998654 2 2234578999999999977632 2211 123456887 763
No 213
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=20.34 E-value=1.1e+02 Score=20.43 Aligned_cols=53 Identities=15% Similarity=0.365 Sum_probs=33.7
Q ss_pred CCCcccccccccCC-----CCccccccCCCCCcchHHHHHH--HHHhccccCCcccccCCCCcCC
Q 026529 36 DGTFTCDICIEPMS-----VNNKFKNNNLCTHPFCQDCTAK--YIEVKVRDNNTAKIECPGLHCE 93 (237)
Q Consensus 36 ~~~~~C~IC~~~~~-----~~~~~~~~~~C~H~fC~~Cl~~--~~~~~i~~~~~~~i~CP~~~C~ 93 (237)
.+...|.+|...-. ..+.++.-..|+..|...|+.. -+...+..+. -.||. |.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~---W~C~~--C~ 62 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALR---WQCIE--CK 62 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSC---CCCTT--TC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccc---ccccc--CC
Confidence 35668999987631 2234555667999999999952 3344454433 46776 65
No 214
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.62 E-value=22 Score=15.78 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=6.9
Q ss_pred ccCcccccccc
Q 026529 152 AQCPKCKQWFC 162 (237)
Q Consensus 152 ~~C~~C~~~~C 162 (237)
..|+.|++.|=
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 45667777663
Done!