BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026531
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O66|A Chain A, Crystal Structure Of Arabidopsis Thaliana Pii Bound To
Citrate
pdb|2O66|B Chain B, Crystal Structure Of Arabidopsis Thaliana Pii Bound To
Citrate
pdb|2O66|C Chain C, Crystal Structure Of Arabidopsis Thaliana Pii Bound To
Citrate
pdb|2O67|A Chain A, Crystal Structure Of Arabidopsis Thaliana Pii Bound To
Malonate
pdb|2O67|B Chain B, Crystal Structure Of Arabidopsis Thaliana Pii Bound To
Malonate
pdb|2O67|C Chain C, Crystal Structure Of Arabidopsis Thaliana Pii Bound To
Malonate
pdb|2RD5|C Chain C, Structural Basis For The Regulation Of N-Acetylglutamate
Kinase By Pii In Arabidopsis Thaliana
pdb|2RD5|D Chain D, Structural Basis For The Regulation Of N-Acetylglutamate
Kinase By Pii In Arabidopsis Thaliana
Length = 135
Score = 207 bits (526), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 112/172 (65%), Positives = 120/172 (69%), Gaps = 44/172 (25%)
Query: 57 QSSPDYIPDSKFYKVEAILRYEVQVLVKLGXXXXXXXXXXXXXXXXXXXMYFFFHLLLIS 116
Q S DYIPDSKFYKVEAI
Sbjct: 2 QISSDYIPDSKFYKVEAI------------------------------------------ 19
Query: 117 GRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIV 176
+RPWR+QQVSSALL +GIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIV
Sbjct: 20 --VRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIV 77
Query: 177 VSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERMAG 228
V KDQVE VI+ I+E ARTGEIGDGKIF++PVSDVIRVRTGERGEKAE+M G
Sbjct: 78 VKKDQVESVINTIIEGARTGEIGDGKIFVLPVSDVIRVRTGERGEKAEKMTG 129
>pdb|3N5B|A Chain A, The Complex Of Pii And Pipx From Anabaena
Length = 112
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV
Sbjct: 8 IRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKVEIVVE 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+QV+ V+DKI+ ARTGEIGDGKIF+ PV VIR+RTGE+ +A
Sbjct: 67 DNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVIRIRTGEKNTEA 111
>pdb|2JJ4|D Chain D, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|E Chain E, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|F Chain F, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2V5H|G Chain G, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|H Chain H, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|I Chain I, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|J Chain J, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|K Chain K, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|L Chain L, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2XG8|A Chain A, Structural Basis Of Gene Regulation By Protein Pii: The
Crystal Complex Of Pii And Pipx From Synechococcus
Elongatus Pcc 7942
pdb|2XG8|B Chain B, Structural Basis Of Gene Regulation By Protein Pii: The
Crystal Complex Of Pii And Pipx From Synechococcus
Elongatus Pcc 7942
pdb|2XG8|C Chain C, Structural Basis Of Gene Regulation By Protein Pii: The
Crystal Complex Of Pii And Pipx From Synechococcus
Elongatus Pcc 7942
Length = 112
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+E
Sbjct: 4 IEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV QV+ VIDKI+ ARTGEIGDGKIF+ PV IR+RTGE+ A
Sbjct: 63 IVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
>pdb|2XUL|A Chain A, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XUL|B Chain B, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XUL|C Chain C, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XUL|D Chain D, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XUL|E Chain E, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XUL|F Chain F, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At High 2-Og Concentrations
pdb|2XZW|A Chain A, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|B Chain B, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|C Chain C, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|D Chain D, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|E Chain E, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|F Chain F, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|G Chain G, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|H Chain H, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
pdb|2XZW|I Chain I, Structure Of Pii From Synechococcus Elongatus In Complex
With 2-Oxoglutarate At Low 2-Og Concentrations
Length = 115
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+E
Sbjct: 4 IEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV QV+ VIDKI+ ARTGEIGDGKIF+ PV IR+RTGE+ A
Sbjct: 63 IVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
>pdb|1QY7|A Chain A, The Structure Of The Pii Protein From The Cyanobacteria
Synechococcus Sp. Pcc 7942
pdb|1QY7|B Chain B, The Structure Of The Pii Protein From The Cyanobacteria
Synechococcus Sp. Pcc 7942
pdb|1QY7|C Chain C, The Structure Of The Pii Protein From The Cyanobacteria
Synechococcus Sp. Pcc 7942
Length = 112
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ G+E++ + F+ K+K+E
Sbjct: 4 IEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGAEYTVE-FLQKLKLE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV QV+ VIDKI+ ARTGEIGDGKIF+ PV IR+RTGE+ A
Sbjct: 63 IVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
>pdb|1UL3|A Chain A, Crystal Structure Of Pii From Synechocystis Sp. Pcc 6803
pdb|1UL3|B Chain B, Crystal Structure Of Pii From Synechocystis Sp. Pcc 6803
pdb|1UL3|C Chain C, Crystal Structure Of Pii From Synechocystis Sp. Pcc 6803
pdb|1UL3|D Chain D, Crystal Structure Of Pii From Synechocystis Sp. Pcc 6803
Length = 112
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV
Sbjct: 8 IRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKIEIVVD 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+ QV+ V+DK++ ARTGEIGDGKIF+ PV V+R+RTGE+ +A
Sbjct: 67 EGQVDMVVDKLVSAARTGEIGDGKIFISPVDSVVRIRTGEKDTEA 111
>pdb|2XBP|A Chain A, A Novel Signal Transduction Protein Pii Variant From
Synechococcus Elongatus Pcc7942 Indicates A Two-Step
Process For Nagk Pii Complex Formation
Length = 113
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+E
Sbjct: 4 IEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV QV+ VIDKI+ ARTGE GDGKIF+ PV IR+RTGE+ A
Sbjct: 63 IVVEDAQVDTVIDKIVAAARTGENGDGKIFVSPVDQTIRIRTGEKNADA 111
>pdb|4AFF|A Chain A, High Resolution Structure Of A Pii Mutant (I86n) Protein
In Complex With Atp, Mg And Flc
Length = 116
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 82/117 (70%), Gaps = 4/117 (3%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+E
Sbjct: 4 IEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERMAGGWS 231
IVV QV+ VIDKI+ ARTGE GDGKIF+ PV IR+RTGE+ A WS
Sbjct: 63 IVVEDAQVDTVIDKIVAAARTGENGDGKIFVSPVDQTIRIRTGEKNADA---ISAWS 116
>pdb|2EG1|A Chain A, The Crystal Structure Of Pii Protein
pdb|2EG2|A Chain A, The Crystal Structure Of Pii Protein
pdb|2Z0G|A Chain A, The Crystal Structure Of Pii Protein
pdb|2Z0G|B Chain B, The Crystal Structure Of Pii Protein
pdb|2Z0G|C Chain C, The Crystal Structure Of Pii Protein
pdb|2Z0G|D Chain D, The Crystal Structure Of Pii Protein
Length = 112
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 84/109 (77%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ +V AL+ +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVID-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+VV + VE V++ I++ A+TG +GDGKIF++PV DVIR+RTGERGE+A
Sbjct: 63 VVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPVEDVIRIRTGERGEQA 111
>pdb|2GW8|A Chain A, Structure Of The Pii Signal Transduction Protein Of
Neisseria Meningitidis At 1.85 Resolution
Length = 114
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I ++P+++ V AL +GI G+TVS+V+GFG Q G TE + G+E++ D F+ K+K+E
Sbjct: 6 IEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVD-FLPKIKIE 64
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+V++ D VE ID I+E AR+G+IGDGKIF++PV + IR+RTGER + A
Sbjct: 65 LVLADDAVERAIDVIVEVARSGKIGDGKIFVLPVEEAIRIRTGERSDAA 113
>pdb|3LF0|A Chain A, Crystal Structure Of The Atp Bound Mycobacterium
Tuberculosis Nitrogen Regulatory Pii Protein
pdb|3LF0|B Chain B, Crystal Structure Of The Atp Bound Mycobacterium
Tuberculosis Nitrogen Regulatory Pii Protein
pdb|3LF0|C Chain C, Crystal Structure Of The Atp Bound Mycobacterium
Tuberculosis Nitrogen Regulatory Pii Protein
Length = 114
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 111 HLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAK 170
H+ LI+ ++P+ + V ++L + G+ G+TVS+++G+G Q G TE + G+E+S D FV K
Sbjct: 2 HMKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVD-FVPK 60
Query: 171 VKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
V++E+VV V+ V+D I+ ARTG+IGDGK+++ PV ++RVRTGERG A
Sbjct: 61 VRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDA 113
>pdb|3BZQ|A Chain A, High Resolution Crystal Structure Of Nitrogen Regulatory
Protein (Rv2919c) Of Mycobacterium Tuberculosis
Length = 114
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 111 HLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAK 170
H+ LI+ ++P+ + V ++L + G+ G+TVS+++G+G Q G TE + G+E+S D FV K
Sbjct: 2 HMKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVD-FVPK 60
Query: 171 VKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
V++E+VV V+ V+D I+ ARTG+IGDGK+++ PV ++RVRTGERG A
Sbjct: 61 VRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDA 113
>pdb|3MHY|A Chain A, A New Pii Protein Structure
pdb|3MHY|B Chain B, A New Pii Protein Structure
pdb|3MHY|C Chain C, A New Pii Protein Structure
pdb|3O5T|B Chain B, Structure Of Drag-Glnz Complex With Adp
Length = 112
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Query: 114 LISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 173
L+ I+P+++ +V AL ++GI+G+TVS+V+GFG Q G TE + G+E+S F+ KVK+
Sbjct: 3 LVMAIIKPFKLDEVREALTSLGIQGLTVSEVKGFGRQKGQTEIYRGAEYSVS-FLPKVKV 61
Query: 174 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
E+ VS DQ E V++ I + A TG IGDGKIF++ ++ +R+RTGE +A
Sbjct: 62 EVAVSDDQYEQVVEAIQKAANTGRIGDGKIFVLDIAQAVRIRTGETNTEA 111
>pdb|1PIL|A Chain A, Structure Of The Escherichia Coli Signal Transducing
Protein Pii
pdb|2PII|A Chain A, Pii, Glnb Product
Length = 112
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 63 IVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>pdb|2J9C|A Chain A, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9C|B Chain B, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9C|C Chain C, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9D|A Chain A, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9D|B Chain B, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9D|C Chain C, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9D|D Chain D, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9D|F Chain F, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9D|G Chain G, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9D|H Chain H, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9D|I Chain I, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9D|J Chain J, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9D|K Chain K, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9D|L Chain L, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9E|A Chain A, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9E|B Chain B, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
pdb|2J9E|C Chain C, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
Length = 119
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP +++ V AL + G G+TVS+V+G G QGG ER+ G E+ D + KVK+E+VV
Sbjct: 10 IRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVD-LIPKVKIELVVK 68
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++ V+ VID I E ARTG GDGKIF++PV V+RVRT E G++A
Sbjct: 69 EEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKEEGKEA 113
>pdb|2J9D|E Chain E, Structure Of Glnk1 With Bound Effectors Indicates
Regulatory Mechanism For Ammonia Uptake
Length = 119
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP +++ V AL + G G+TVS+V+G G QGG ER+ G E+ D + KVK+E+VV
Sbjct: 10 IRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVD-LIPKVKIELVVK 68
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++ V+ VID I E ARTG GDGKIF++PV V+RVRT E G++A
Sbjct: 69 EEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKEEGKEA 113
>pdb|2GNK|A Chain A, Glnk, A Signal Protein From E. Coli
Length = 112
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 82/110 (74%), Gaps = 1/110 (0%)
Query: 114 LISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 173
L++ I+P++++ V AL ++GI+G+TV++V+GFG Q G+ E + G+E+S + F+ KVK+
Sbjct: 3 LVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGNAELYRGAEYSVN-FLPKVKI 61
Query: 174 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 62 DVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111
>pdb|2NS1|B Chain B, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 116
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 114 LISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 173
L++ I+P++++ V AL ++GI+G+TV++V+GFG Q G E + G+EFS + F+ KVK+
Sbjct: 7 LVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVN-FLPKVKI 65
Query: 174 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 66 DVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 115
>pdb|1GNK|A Chain A, Glnk, A Signal Protein From E. Coli
pdb|1GNK|B Chain B, Glnk, A Signal Protein From E. Coli
pdb|2NUU|G Chain G, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|H Chain H, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|I Chain I, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|J Chain J, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|K Chain K, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|L Chain L, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 112
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 114 LISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 173
L++ I+P++++ V AL ++GI+G+TV++V+GFG Q G E + G+E+S + F+ KVK+
Sbjct: 3 LVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKI 61
Query: 174 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 62 DVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111
>pdb|1HWU|A Chain A, Structure Of Pii Protein From Herbaspirillum Seropedicae
pdb|1HWU|B Chain B, Structure Of Pii Protein From Herbaspirillum Seropedicae
pdb|1HWU|C Chain C, Structure Of Pii Protein From Herbaspirillum Seropedicae
pdb|1HWU|D Chain D, Structure Of Pii Protein From Herbaspirillum Seropedicae
pdb|1HWU|E Chain E, Structure Of Pii Protein From Herbaspirillum Seropedicae
pdb|1HWU|F Chain F, Structure Of Pii Protein From Herbaspirillum Seropedicae
Length = 112
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
++ I+P+++ +V +L +G+ G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 VTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+VV VE +D I++ ARTG+IGDGKIF+ V VIR+RTGE G A
Sbjct: 63 VVVDDKVVEQAVDAIIKAARTGKIGDGKIFVQEVEQVIRIRTGETGPDA 111
>pdb|3NCP|A Chain A, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCP|B Chain B, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCP|C Chain C, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCP|D Chain D, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCQ|A Chain A, Glnk2 From Archaeoglobus Fulgidus, Atp Complex
pdb|3NCQ|B Chain B, Glnk2 From Archaeoglobus Fulgidus, Atp Complex
pdb|3NCQ|C Chain C, Glnk2 From Archaeoglobus Fulgidus, Atp Complex
pdb|3NCR|A Chain A, Glnk2 From Archaeoglubus Fulgidus, Adp Complex
pdb|3NCR|B Chain B, Glnk2 From Archaeoglubus Fulgidus, Adp Complex
pdb|3NCR|C Chain C, Glnk2 From Archaeoglubus Fulgidus, Adp Complex
Length = 119
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I +R + +V +AL G G+TV+DV+G G QGG + G E + KVK+E
Sbjct: 4 IEAIVRAEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTM-EVTLLPKVKLE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV D VE VI I+ A TG GDGKIF++PV DV+R+RTGERG+ +
Sbjct: 63 IVVKDDAVEEVIGLIVNSAFTGSPGDGKIFIIPVEDVVRIRTGERGDDS 111
>pdb|3L7P|A Chain A, Crystal Structure Of Smu.1657c, Putative Nitrogen
Regulatory Protein Pii From Streptococcus Mutans
pdb|3L7P|B Chain B, Crystal Structure Of Smu.1657c, Putative Nitrogen
Regulatory Protein Pii From Streptococcus Mutans
pdb|3L7P|C Chain C, Crystal Structure Of Smu.1657c, Putative Nitrogen
Regulatory Protein Pii From Streptococcus Mutans
pdb|3L7P|D Chain D, Crystal Structure Of Smu.1657c, Putative Nitrogen
Regulatory Protein Pii From Streptococcus Mutans
pdb|3L7P|E Chain E, Crystal Structure Of Smu.1657c, Putative Nitrogen
Regulatory Protein Pii From Streptococcus Mutans
pdb|3L7P|F Chain F, Crystal Structure Of Smu.1657c, Putative Nitrogen
Regulatory Protein Pii From Streptococcus Mutans
Length = 115
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
Query: 115 ISGRIRPWRVQQVSSALLNMG-IRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 173
I IR +++ + +AL+ G I+G+T+S V GFG Q G TE G + + +AKVK+
Sbjct: 6 IEAIIRSDKLEDLKAALVQSGFIKGMTISQVLGFGNQRGYTEYVRGQKITP-TLLAKVKV 64
Query: 174 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGER 219
EIV VE +I I + +TGE+GDGKIF+ PV +++R+RTGER
Sbjct: 65 EIVAHDAAVEEMITTISQAVKTGEVGDGKIFVSPVDEIVRIRTGER 110
>pdb|1UFL|A Chain A, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1UFL|B Chain B, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1UFL|C Chain C, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1V3R|A Chain A, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1V3R|B Chain B, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1V3R|C Chain C, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1V3S|A Chain A, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1V3S|B Chain B, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1V3S|C Chain C, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1V9O|A Chain A, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1V9O|B Chain B, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1V9O|C Chain C, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1VFJ|A Chain A, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1VFJ|B Chain B, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
pdb|1VFJ|C Chain C, Crystal Structure Of Tt1020 From Thermus Thermophilus Hb8
Length = 116
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 114 LISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 173
LI +RP ++ +V AL +RG+T+S V+G G + E + G+ + KV++
Sbjct: 3 LIVAIVRPEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKME-LHEKVRL 61
Query: 174 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
EI VS+ V+ ++ I++ ARTGE+GDGKIF++PV V R+RTGE E A
Sbjct: 62 EIGVSEPFVKPTVEAILKAARTGEVGDGKIFVLPVEKVYRIRTGEEDEAA 111
>pdb|3O8W|A Chain A, Archaeoglobus Fulgidus Glnk1
Length = 118
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP +++ V AL G G+TV++V+G G Q G + G E D + K K+E+VVS
Sbjct: 8 IRPEKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVD-LLQKTKVEVVVS 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGE 218
D V+ V++ I+ ARTG+ GDG+IF++PV +++RTGE
Sbjct: 67 DDAVDEVVEAIVSSARTGKFGDGRIFVIPVEKSVKIRTGE 106
>pdb|3T9Z|A Chain A, A. Fulgidus Glnk3, Ligand-Free
pdb|3T9Z|B Chain B, A. Fulgidus Glnk3, Ligand-Free
pdb|3T9Z|C Chain C, A. Fulgidus Glnk3, Ligand-Free
pdb|3T9Z|D Chain D, A. Fulgidus Glnk3, Ligand-Free
pdb|3T9Z|E Chain E, A. Fulgidus Glnk3, Ligand-Free
pdb|3T9Z|F Chain F, A. Fulgidus Glnk3, Ligand-Free
pdb|3TA0|A Chain A, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA0|B Chain B, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA0|C Chain C, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA0|D Chain D, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA0|E Chain E, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA0|F Chain F, A. Fulgidus Glnk3, Mgatp Complex
pdb|3TA1|A Chain A, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA1|B Chain B, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA1|C Chain C, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA1|D Chain D, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA1|E Chain E, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA1|F Chain F, A. Fulgidus Glnk3, Mgadp Complex
pdb|3TA2|A Chain A, A. Fulgidus Glnk3, Mgatp2-Og Complex
pdb|3TA2|B Chain B, A. Fulgidus Glnk3, Mgatp2-Og Complex
pdb|3TA2|C Chain C, A. Fulgidus Glnk3, Mgatp2-Og Complex
Length = 118
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Query: 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKV 171
+ ++ IRP +++ V AL G G+TV++V+G G Q G + G E D + K
Sbjct: 1 MKMVVAVIRPEKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVD-LLQKT 59
Query: 172 KMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGE 218
K+E+VVS D V+ V++ I+ ARTG+ GDG+IF++PV +++RTG+
Sbjct: 60 KVEVVVSDDAVDEVVEAIVSSARTGKFGDGRIFVIPVEKSVKIRTGD 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,849,122
Number of Sequences: 62578
Number of extensions: 199530
Number of successful extensions: 477
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 28
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)