BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026531
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZST4|GLNB_ARATH Nitrogen regulatory protein P-II homolog OS=Arabidopsis thaliana
GN=GLB1 PE=1 SV=1
Length = 196
Score = 228 bits (581), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/232 (56%), Positives = 148/232 (63%), Gaps = 49/232 (21%)
Query: 2 AAIANPASFTPLNFSSHLKELPLVNFGSVRPSLRISRLSRLK-CTRNVSN----LHVIRA 56
A++ P S T L F S K + + S+ R SR S L T++ SN L V+ A
Sbjct: 3 ASMTKPISITSLGFYSDRKNIAFSDCISICSGFRHSRPSCLDLVTKSPSNNSRVLPVVSA 62
Query: 57 QSSPDYIPDSKFYKVEAILRYEVQVLVKLGLLLLLLLLFPFFPSPLLSSMYFFFHLLLIS 116
Q S DYIPDSKFYKVEAI
Sbjct: 63 QISSDYIPDSKFYKVEAI------------------------------------------ 80
Query: 117 GRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIV 176
+RPWR+QQVSSALL +GIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIV
Sbjct: 81 --VRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIV 138
Query: 177 VSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERMAG 228
V KDQVE VI+ I+E ARTGEIGDGKIF++PVSDVIRVRTGERGEKAE+M G
Sbjct: 139 VKKDQVESVINTIIEGARTGEIGDGKIFVLPVSDVIRVRTGERGEKAEKMTG 190
>sp|Q6AUR2|GLNB_ORYSJ Nitrogen regulatory protein P-II homolog OS=Oryza sativa subsp.
japonica GN=GLB PE=2 SV=1
Length = 212
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/177 (61%), Positives = 122/177 (68%), Gaps = 45/177 (25%)
Query: 62 YIPDSKFYKVEAILRYEVQVLVKLGLLLLLLLLFPFFPSPLLSSMYFFFHLLLISGRIRP 121
Y P+S+FYKVEAILR P
Sbjct: 77 YQPESEFYKVEAILR--------------------------------------------P 92
Query: 122 WRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQ 181
WRV VSS LL MGIRGVTVSDVRGFGAQGGSTERH GSEF+ED F+ KVKMEIVVSKDQ
Sbjct: 93 WRVPYVSSGLLQMGIRGVTVSDVRGFGAQGGSTERHEGSEFAEDTFIDKVKMEIVVSKDQ 152
Query: 182 VEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERMAGGWSD-ISSAV 237
VE V+DKI+E+ARTGEIGDGKIFL+PVSDVIR+RTGERGE+AERMAGG +D +SSA+
Sbjct: 153 VEAVVDKIIEKARTGEIGDGKIFLIPVSDVIRIRTGERGERAERMAGGLADKLSSAM 209
>sp|O30794|GLNB_NOSP7 Nitrogen regulatory protein P-II OS=Nostoc punctiforme (strain ATCC
29133 / PCC 73102) GN=glnB PE=3 SV=1
Length = 112
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV
Sbjct: 8 IRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKVEIVVD 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+QV+ V+DKI+ ARTGEIGDGKIF+ PV VIR+RTGE+ +A
Sbjct: 67 DNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVIRIRTGEKNTEA 111
>sp|Q47894|GLNB_FREDI Nitrogen regulatory protein P-II OS=Fremyella diplosiphon GN=glnB
PE=3 SV=1
Length = 112
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV
Sbjct: 8 IRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKVEIVVE 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+QV+ V+DKI+ ARTGEIGDGKIF+ PV V+R+RTGE+ +A
Sbjct: 67 DNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVVRIRTGEKNTEA 111
>sp|P0A3F5|GLNB_SYNP6 Nitrogen regulatory protein P-II OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=glnB PE=1 SV=1
Length = 112
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+E
Sbjct: 4 IEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV QV+ VIDKI+ ARTGEIGDGKIF+ PV IR+RTGE+ A
Sbjct: 63 IVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
>sp|P0A3F4|GLNB_SYNE7 Nitrogen regulatory protein P-II OS=Synechococcus elongatus (strain
PCC 7942) GN=glnB PE=1 SV=1
Length = 112
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+E
Sbjct: 4 IEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV QV+ VIDKI+ ARTGEIGDGKIF+ PV IR+RTGE+ A
Sbjct: 63 IVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
>sp|Q55247|GLNB_SYNY3 Nitrogen regulatory protein P-II OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=glnB PE=1 SV=1
Length = 112
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP+++ +V AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV
Sbjct: 8 IRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKIEIVVD 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+ QV+ V+DK++ ARTGEIGDGKIF+ PV V+R+RTGE+ +A
Sbjct: 67 EGQVDMVVDKLVSAARTGEIGDGKIFISPVDSVVRIRTGEKDTEA 111
>sp|O66513|GLNB_AQUAE Nitrogen regulatory protein P-II OS=Aquifex aeolicus (strain VF5)
GN=glnB PE=1 SV=1
Length = 112
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 84/109 (77%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ +V AL+ +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVID-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+VV + VE V++ I++ A+TG +GDGKIF++PV DVIR+RTGERGE+A
Sbjct: 63 VVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPVEDVIRIRTGERGEQA 111
>sp|Q9CJK1|GLNB_PASMU Nitrogen regulatory protein P-II OS=Pasteurella multocida (strain
Pm70) GN=glnB PE=3 SV=1
Length = 112
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ V +L ++GI G+TV++VRGFG Q G TE + G+E+ D F+ KVKME
Sbjct: 4 IEAIIKPFKLDDVRESLSDVGITGMTVTEVRGFGRQKGHTELYRGAEYMVD-FLPKVKME 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV+ +QV+ I+ IME A+TG+IGDGKIF+ V VIR+RTGE E A
Sbjct: 63 IVVTDEQVDQCIEAIMETAQTGKIGDGKIFVYDVERVIRIRTGEENEDA 111
>sp|P64249|GLNB_MYCTU Nitrogen regulatory protein P-II OS=Mycobacterium tuberculosis
GN=glnB PE=1 SV=1
Length = 112
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
Query: 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKV 171
+ LI+ ++P+ + V ++L + G+ G+TVS+++G+G Q G TE + G+E+S D FV KV
Sbjct: 1 MKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVD-FVPKV 59
Query: 172 KMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++E+VV V+ V+D I+ ARTG+IGDGK+++ PV ++RVRTGERG A
Sbjct: 60 RIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDA 111
>sp|P64250|GLNB_MYCBO Nitrogen regulatory protein P-II OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=glnB PE=3 SV=1
Length = 112
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
Query: 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKV 171
+ LI+ ++P+ + V ++L + G+ G+TVS+++G+G Q G TE + G+E+S D FV KV
Sbjct: 1 MKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVD-FVPKV 59
Query: 172 KMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++E+VV V+ V+D I+ ARTG+IGDGK+++ PV ++RVRTGERG A
Sbjct: 60 RIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDA 111
>sp|P11671|GLNB_KLEOX Nitrogen regulatory protein P-II OS=Klebsiella oxytoca GN=glnB PE=1
SV=1
Length = 112
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV+ D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 63 IVVTDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|P21193|GLNB_AZOBR Nitrogen regulatory protein P-II OS=Azospirillum brasilense GN=glnB
PE=3 SV=1
Length = 112
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ +V AL +GI+G+TV++ +GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IEAIIKPFKLDEVKEALHEVGIKGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+V+ VE I+ I + A TG IGDGKIF+ PV +V+R+RTGE+G A
Sbjct: 63 VVMEDSLVERAIEAIQQAAHTGRIGDGKIFVTPVEEVVRIRTGEKGGDA 111
>sp|P0A9Z6|GLNB_SHIFL Nitrogen regulatory protein P-II 1 OS=Shigella flexneri GN=glnB
PE=3 SV=1
Length = 112
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 63 IVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|P0A9Z4|GLNB_SALTY Nitrogen regulatory protein P-II 1 OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=glnB PE=3 SV=1
Length = 112
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 63 IVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|P0A9Z5|GLNB_SALTI Nitrogen regulatory protein P-II 1 OS=Salmonella typhi GN=glnB PE=3
SV=1
Length = 112
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 63 IVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|P0A9Z1|GLNB_ECOLI Nitrogen regulatory protein P-II 1 OS=Escherichia coli (strain K12)
GN=glnB PE=1 SV=1
Length = 112
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 63 IVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|P0A9Z2|GLNB_ECOL6 Nitrogen regulatory protein P-II 1 OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=glnB PE=3 SV=1
Length = 112
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 63 IVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|P0A9Z3|GLNB_ECO57 Nitrogen regulatory protein P-II 1 OS=Escherichia coli O157:H7
GN=glnB PE=3 SV=1
Length = 112
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ V AL +GI G+TV++V+GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV D V+ +D I+ A+TG+IGDGKIF+ V+ VIR+RTGE + A
Sbjct: 63 IVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAA 111
>sp|Q60381|Y059_METJA Uncharacterized nitrogen regulatory PII-like protein MJ0059
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0059
PE=1 SV=1
Length = 112
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP +++ V AL + G G+TVS+V+G G QGG ER+ G E+ D + KVK+E+VV
Sbjct: 8 IRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVD-LIPKVKIELVVK 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++ V+ VID I E ARTG GDGKIF++PV V+RVRT E G++A
Sbjct: 67 EEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKEEGKEA 111
>sp|P43519|GLNB_RHOSH Nitrogen regulatory protein P-II OS=Rhodobacter sphaeroides GN=glnB
PE=3 SV=1
Length = 112
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ +V AL G++G++V++V+GFG Q G TE + G+ + D F+ KVK+E
Sbjct: 4 IEAIIKPFKLDEVKEALQAAGVQGLSVTEVKGFGRQKGHTELYRGAAYVVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+V++ D VE ++ I+ +RT +IGDGKIF+ PV IR+RTGE GE A
Sbjct: 63 VVLADDMVEAAVEAIVSASRTDKIGDGKIFISPVEQAIRIRTGETGEDA 111
>sp|Q98N18|GLNB_RHILO Nitrogen regulatory protein P-II OS=Rhizobium loti (strain
MAFF303099) GN=glnB PE=3 SV=1
Length = 112
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ +V AL G++G+TV++ +GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IEAIIKPFKLDEVKEALQEAGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 220
+V+ D VEG I+ I + A+TG IGDGKIF+ + +V+R+RTGE G
Sbjct: 63 VVLGDDAVEGAIEAIRKAAQTGRIGDGKIFVSNIEEVVRIRTGETG 108
>sp|P43795|GLNB_HAEIN Nitrogen regulatory protein P-II OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=glnB PE=3 SV=1
Length = 112
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ V +L ++GI G+T+++VRGFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IEAMIKPFKLDDVRESLSDIGISGMTITEVRGFGRQKGHTELYRGAEYMVD-FLPKVKLE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+VV + V+ I+ I+E A+TG+IGDGKIF+ V IR+RTGE E A
Sbjct: 63 VVVPDELVDQCIEAIIETAQTGKIGDGKIFVYHVERAIRIRTGEENEDA 111
>sp|P0AC58|GLNK_SHIFL Nitrogen regulatory protein P-II 2 OS=Shigella flexneri GN=glnK
PE=3 SV=1
Length = 112
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 114 LISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 173
L++ I+P++++ V AL ++GI+G+TV++V+GFG Q G E + G+E+S + F+ KVK+
Sbjct: 3 LVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKI 61
Query: 174 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 62 DVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111
>sp|P0AC55|GLNK_ECOLI Nitrogen regulatory protein P-II 2 OS=Escherichia coli (strain K12)
GN=glnK PE=1 SV=1
Length = 112
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 114 LISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 173
L++ I+P++++ V AL ++GI+G+TV++V+GFG Q G E + G+E+S + F+ KVK+
Sbjct: 3 LVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKI 61
Query: 174 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 62 DVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111
>sp|P0AC56|GLNK_ECOL6 Nitrogen regulatory protein P-II 2 OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=glnK PE=3 SV=1
Length = 112
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 114 LISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 173
L++ I+P++++ V AL ++GI+G+TV++V+GFG Q G E + G+E+S + F+ KVK+
Sbjct: 3 LVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKI 61
Query: 174 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 62 DVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111
>sp|P0AC57|GLNK_ECO57 Nitrogen regulatory protein P-II 2 OS=Escherichia coli O157:H7
GN=glnK PE=3 SV=1
Length = 112
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 114 LISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 173
L++ I+P++++ V AL ++GI+G+TV++V+GFG Q G E + G+E+S + F+ KVK+
Sbjct: 3 LVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVN-FLPKVKI 61
Query: 174 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++ ++ DQ++ VID + + A TG+IGDGKIF+ + VIR+RTGE E A
Sbjct: 62 DVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAA 111
>sp|Q52905|GLNB_RHIME Nitrogen regulatory protein P-II OS=Rhizobium meliloti (strain
1021) GN=glnB PE=3 SV=1
Length = 112
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ +V AL +G++G+TV++ +GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKVE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 220
+V++ + E VI+ I A+TG IGDGKIF+ V +VIR+RTGE G
Sbjct: 63 VVLADENAEAVIEAIRNAAQTGRIGDGKIFVSNVEEVIRIRTGETG 108
>sp|Q58740|Y1344_METJA Uncharacterized nitrogen regulatory PII-like protein MJ1344
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1344
PE=3 SV=1
Length = 112
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP +++ V AL + G G+TVS+V+G G QGG ER+ G E+ D + KVK+E+VV
Sbjct: 8 IRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVD-LIPKVKIELVVK 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 220
++ V+ VID I E ARTG GDGKIF++PV V+RVRT E G
Sbjct: 67 EEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKEEG 108
>sp|Q53044|GLNB_RHORT Nitrogen regulatory protein P-II OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnB PE=3 SV=1
Length = 112
Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I I+P+++ +V AL +G++G+TV++ +GFG Q G TE + G+E+ D F+ KVK+E
Sbjct: 4 IEAIIKPFKLDEVKEALHEIGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKIE 62
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 220
+V+ VE I+ I + A+TG IGDGKIF+ + + IR+RTGERG
Sbjct: 63 LVIEDALVERAIEAIQQAAQTGRIGDGKIFVYAIEEAIRIRTGERG 108
>sp|P14179|GLNB_BRAJA Nitrogen regulatory protein P-II OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnB PE=3 SV=2
Length = 112
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
I+P+++ +V AL +G++G+TV++ +GFG Q G E + G+E+ D F+ KVK+EIV+
Sbjct: 8 IKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVD-FLPKVKIEIVIG 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 220
D VE ID I A+TG IGDGKIF+ + + IR+RTGE G
Sbjct: 67 DDLVERAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESG 108
>sp|O26760|GLNB2_METTH Nitrogen regulatory protein P-II 2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_664 PE=3 SV=1
Length = 115
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 81/118 (68%), Gaps = 4/118 (3%)
Query: 106 MYFFFHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSED 165
M F ++ I IRP ++++V +AL G G+TV++VRG G Q G TE + G ++ D
Sbjct: 1 MIFMKEIVAI---IRPEKLEEVKNALEAAGCHGMTVTEVRGRGRQLGITESYRGRDYRID 57
Query: 166 KFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+ K K+EIVV+ + V+ V++ I++ A+TG+IGDGKIF+ V +V+R+RTGE G+KA
Sbjct: 58 -LLPKTKIEIVVNDEDVDTVVETIVKSAQTGDIGDGKIFISGVDEVVRIRTGESGKKA 114
>sp|O26758|GLNB1_METTH Nitrogen regulatory protein P-II 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_662 PE=3 SV=1
Length = 115
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174
I+ IR +++ V AL MGI G+TVSDV+G G Q G E + G ++ D + KV++E
Sbjct: 7 ITAIIRREKLEDVKDALELMGIHGMTVSDVKGRGQQMGIRESYRGMDYCVD-LLPKVQLE 65
Query: 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
IVV + +E ++ I E ARTG++GDGKIF+ V DV+R+RTGE G A
Sbjct: 66 IVVDSEDLERTVEAISENARTGDVGDGKIFVTDVIDVVRIRTGEHGRDA 114
>sp|O54053|GLNB_RHIEC Nitrogen regulatory protein P-II OS=Rhizobium etli (strain CFN 42 /
ATCC 51251) GN=glnB PE=3 SV=3
Length = 112
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
I+P+++ +V AL +GI+G+TV++V+G+G Q G TE + G+E++ F+ K+K+EI V+
Sbjct: 8 IKPFKLDEVREALTAIGIQGLTVTEVKGYGRQKGHTEIYRGTEYAVS-FLPKLKIEIAVA 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+ V+ ++ I A+TG+IGDGKIF+ + +R+RTGE +A
Sbjct: 67 SELVDRAVEAIAASAKTGQIGDGKIFVYSIDHAVRIRTGETDSEA 111
>sp|P13556|GLNB_RHOCA Nitrogen regulatory protein P-II OS=Rhodobacter capsulatus GN=glnB
PE=3 SV=1
Length = 112
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
I+P+++ +V AL GI+G++V +V+GFG Q G TE + G+E+ D F+ KVK+E+V+
Sbjct: 8 IKPFKLDEVKEALQEAGIQGLSVIEVKGFGRQKGHTELYRGAEYVVD-FLPKVKIEMVLP 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+ V+ I+ I+ ART +IGDGKIF+ + IR+RTGE GE A
Sbjct: 67 DEMVDIAIEAIVGAARTEKIGDGKIFVSSIEQAIRIRTGETGEDA 111
>sp|P09827|GLNB_RHILV Nitrogen regulatory protein P-II OS=Rhizobium leguminosarum bv.
viciae GN=glnB PE=3 SV=1
Length = 111
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 74/102 (72%), Gaps = 2/102 (1%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
I+P+++ +V S +G++G+TV++ +GFG Q G TE + G+E+ D F+ KVK+E+V++
Sbjct: 8 IKPFKLDEVRSPS-GVGLQGITVTEAKGFGRQKGHTELYRGAEYVVD-FLPKVKVEVVLA 65
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 220
+ E VI+ I + A+TG IGDGKIF+ V +VIR+RTGE G
Sbjct: 66 DENAEAVIEAIRKAAQTGRIGDGKIFVSNVEEVIRIRTGETG 107
>sp|Q9TM37|GLNB_CYACA Nitrogen regulatory protein P-II OS=Cyanidium caldarium GN=glnB
PE=3 SV=1
Length = 113
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP+++++V L+ G+ G+TV++V G G Q G ER G E+ + + + KVK+EIVV
Sbjct: 9 IRPFKLEEVKVRLMTFGVPGITVTNVMGCGKQIGGIERSKGVEY-DSELIEKVKIEIVVM 67
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGER 219
+ ++ +I+ I+ TGEIGDGKIF+ PVS VIR+RT ++
Sbjct: 68 NEHIDELIEIIINAVWTGEIGDGKIFVSPVSSVIRIRTQDK 108
>sp|P51254|GLNB_PORPU Nitrogen regulatory protein P-II OS=Porphyra purpurea GN=glnB PE=3
SV=1
Length = 112
Score = 84.0 bits (206), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP+++ +V AL+ GI G+TV V GFG Q G TER+ GSE+S + K+K+EI+VS
Sbjct: 8 IRPFKLNEVKLALVKGGIGGMTVVKVSGFGRQKGQTERYKGSEYSI-DIIDKIKIEIIVS 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGE 218
D+V + + I++ A+TGEIGDGKIF+ V VIR+RT +
Sbjct: 67 DDKVNSITEIIIKTAKTGEIGDGKIFISDVEQVIRIRTND 106
>sp|Q1XDN3|GLNB_PORYE Nitrogen regulatory protein P-II OS=Porphyra yezoensis GN=glnB PE=3
SV=1
Length = 112
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS 178
IRP+++ +V AL+ GI G+TV V GFG Q G TER+ GSE+S D I++S
Sbjct: 8 IRPFKLNEVKLALVKEGIGGMTVIKVSGFGRQKGQTERYKGSEYSIDIIDKIKIE-IIIS 66
Query: 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGE 218
D+VE +++ I++ ++TGEIGDGKIF+ + VIR+RT +
Sbjct: 67 DDKVEKIVETIIKASKTGEIGDGKIFISSIERVIRIRTND 106
>sp|Q07428|NRGB_BACSU Nitrogen regulatory PII-like protein OS=Bacillus subtilis (strain
168) GN=nrgB PE=2 SV=1
Length = 116
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSK 179
RP +++ L +G+ +T S+V G G Q TE + G + E ++K+EIVVSK
Sbjct: 13 RPANFEKLKQELGKIGVTSLTFSNVHGCGLQKAHTELYRGVKI-ESNVYERLKIEIVVSK 71
Query: 180 DQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
V+ V + +TG GDGKIF+ +S+ I +RTGE G +A
Sbjct: 72 VPVDQVTETAKRVLKTGSPGDGKIFVYEISNTINIRTGEEGPEA 115
>sp|P0CW47|GLNB2_METMP Nitrogen fixation nifHD region glnB-like protein 2 OS=Methanococcus
maripaludis (strain S2 / LL) GN=glnBII PE=3 SV=1
Length = 121
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSED-----------KF 167
IRP ++ Q + L +G +T + V G G Q G F D ++
Sbjct: 8 IRPSKMAQTKTVLEGLGFPAMTANRVLGRGKQKAIVGELG---FEVDNKELLNQPGDMRY 64
Query: 168 VAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+ K + ++V + V++ IM+ ++G+ GDGKIF+ P+ D+I VRT ERGE A
Sbjct: 65 IPKTMLTLIVPDEDASLVVEAIMKVNKSGQYGDGKIFVCPIEDIITVRTSERGEAA 120
>sp|P0CW46|GLNB2_METMI Nitrogen fixation nifHD region glnB-like protein 2 OS=Methanococcus
maripaludis GN=glnBII PE=3 SV=1
Length = 121
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSED-----------KF 167
IRP ++ Q + L +G +T + V G G Q G F D ++
Sbjct: 8 IRPSKMAQTKTVLEGLGFPAMTANRVLGRGKQKAIVGELG---FEVDNKELLNQPGDMRY 64
Query: 168 VAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+ K + ++V + V++ IM+ ++G+ GDGKIF+ P+ D+I VRT ERGE A
Sbjct: 65 IPKTMLTLIVPDEDASLVVEAIMKVNKSGQYGDGKIFVCPIEDIITVRTSERGEAA 120
>sp|P51604|GLNB2_METIV Nitrogen fixation nifHD region GlnB-like protein 2
OS=Methanobacterium ivanovii GN=glnBB PE=3 SV=1
Length = 122
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQ----GGSTERHGGSEFSED----KFVAK 170
IRP ++ + L +G +T + V G G Q G T + E+ +++ K
Sbjct: 8 IRPNKINRTKEVLDALGFSSMTANAVFGRGRQKAIVGEVTFAIQNKDLREEEGSMRYIPK 67
Query: 171 VKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
+ +VV + V++ IM+ +TG+IGDGKIF+ P+ D +RVRT E GE A
Sbjct: 68 RMISLVVPDEDASLVVESIMKVNKTGQIGDGKIFVCPIEDAVRVRTKESGEDA 120
>sp|P54806|GLNB4_METBA Nitrogen fixation nifHD2 region GlnB-like protein 2
OS=Methanosarcina barkeri PE=3 SV=1
Length = 125
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDK-------F 167
I+ IR + Q+ LL G T+ V G G Q G +K F
Sbjct: 4 ITAIIRMNKAQRTKDVLLECGFPSFTIRRVMGRGKQRGLCHEFNPPLPDPEKEAETCIRF 63
Query: 168 VAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGE 221
+ K IVV + V V+ KI+E +TG GDGKIF+ V++ IR+RTGE GE
Sbjct: 64 IPKRMFTIVVDDENVSEVVQKIIEVNQTGNAGDGKIFVSDVTEAIRIRTGESGE 117
>sp|Q50787|GLNB2_METTM Nitrogen fixation nifHD region GlnB-like protein 2
OS=Methanothermobacter marburgensis (strain DSM 2133 /
14651 / NBRC 100331 / OCM 82 / Marburg) GN=glnBB PE=3
SV=1
Length = 121
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTER----HGGSEFSE----DKFVAK 170
IRP +++ L ++G + V G G Q + E E +++ K
Sbjct: 8 IRPKNMKKTRDVLESLGFPSFNATRVLGRGKQRAIIDEVTIPSPSPEIDEVRGTMRYIPK 67
Query: 171 VKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
++I V V+ V++ IM+ TG+IGDGKIF+ PV D +R+RTG+RG +A
Sbjct: 68 RMIQITVEDPDVQLVVEAIMKVNHTGKIGDGKIFVCPVDDAMRIRTGDRGTEA 120
>sp|P54809|GLNB2_METBA Nitrogen fixation nifHD1 region GlnB-like protein 2
OS=Methanosarcina barkeri GN=glnBB PE=3 SV=1
Length = 123
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHG--------GSEFSED- 165
++ +RP ++ AL +G R +T V G G Q G + +S
Sbjct: 4 VTAVVRPNKMSVTKDALDKIGYRRMTAIPVLGKGKQRGISGELNFYIQPKLLAKRYSTGM 63
Query: 166 KFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
K++ K + IVV+ + V+ VI I+ +T +IGDGKIF+ + +VIR+RTGE+GE A
Sbjct: 64 KYIPKRLLSIVVNDEDVDQVIKTIIGVNQTAQIGDGKIFVESIDEVIRIRTGEKGELA 121
>sp|Q50786|GLNB1_METTM Nitrogen fixation nifHD region GlnB-like protein 1
OS=Methanothermobacter marburgensis (strain DSM 2133 /
14651 / NBRC 100331 / OCM 82 / Marburg) GN=glnBA PE=3
SV=2
Length = 105
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKV 171
+ +I IRP + ++V+ AL + G +T DV G G Q G R + E + K
Sbjct: 1 MKMIRAIIRPEKSEEVADALDDAGFPALTKIDVIGRGKQKGI--RFDEIYYDE---IPKT 55
Query: 172 KMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 220
M IVV E V+ I E TG+IGDGKIF+ PV + VRT E G
Sbjct: 56 MMLIVVDDADAERVVLVISESGYTGKIGDGKIFISPVENAYTVRTREEG 104
>sp|P25770|GLNB2_METTL Nitrogen fixation nifHD region GlnB-like protein 2 OS=Methanococcus
thermolithotrophicus GN=glnBB PE=3 SV=1
Length = 128
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGG-------------STERHGGSEFSED 165
IRP V + AL +G VT+++ G G Q G G E
Sbjct: 8 IRPNTVSKTVKALDVVGFPAVTMAECFGRGKQKGYFSANLPEIVDIQKIIEEGEKEGRFI 67
Query: 166 KFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKA 223
K++ K + IVV V V+ I + RTG GDG+IF++PV + IRVRTGE GE A
Sbjct: 68 KYIPKRLISIVVDDADVPLVVGIISKVNRTGSFGDGRIFVLPVEEAIRVRTGETGEIA 125
>sp|P25771|GLNB1_METTL Nitrogen fixation nifHD region GlnB-like protein 1 OS=Methanococcus
thermolithotrophicus GN=glnBA PE=3 SV=1
Length = 105
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKV 171
+ +I +RP +V + +L N G T + G G QGG G F ++ + K
Sbjct: 1 MKMIKAIVRPDKVDDIVDSLENAGYPAFTKINSVGRGKQGG---LKVGEIFYDE--LPKT 55
Query: 172 KMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERG 220
+ I V+ D+V+ V+ I A TG GDGKIF+ P+++ +RTGE G
Sbjct: 56 ILLIAVNDDEVDEVVGLIKSSASTGNFGDGKIFIQPITEAYTIRTGETG 104
>sp|P0CW45|GLNB1_METMP Nitrogen fixation nifHD region glnB-like protein 1 OS=Methanococcus
maripaludis (strain S2 / LL) GN=glnBI PE=3 SV=1
Length = 105
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 114 LISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKM 173
+I +RP + ++V AL G +T DV G G Q G + + E + K +
Sbjct: 3 MIRAVVRPSKAEEVVDALAESGCVALTKMDVIGRGKQKGI--KIDQIYYDE---LPKTML 57
Query: 174 EIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRT 216
+VV D E VI+ I + A TG GDGKIF+ PV + VRT
Sbjct: 58 MLVVEDDAAENVIELITKTAYTGSFGDGKIFVSPVDEAYTVRT 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,410,077
Number of Sequences: 539616
Number of extensions: 3307935
Number of successful extensions: 8633
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 8529
Number of HSP's gapped (non-prelim): 80
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)