Query 026531
Match_columns 237
No_of_seqs 138 out of 1148
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 09:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0347 GlnK Nitrogen regulato 100.0 4.8E-39 1E-43 258.5 11.0 112 112-224 1-112 (112)
2 PRK10858 nitrogen regulatory p 100.0 9E-39 1.9E-43 255.9 11.3 112 112-224 1-112 (112)
3 PRK10665 nitrogen regulatory p 100.0 1.1E-38 2.4E-43 255.4 11.2 112 112-224 1-112 (112)
4 PF00543 P-II: Nitrogen regula 100.0 1.5E-31 3.2E-36 207.9 12.1 102 115-217 1-102 (102)
5 PF06153 DUF970: Protein of un 99.1 1.6E-10 3.6E-15 93.1 7.3 85 112-214 1-109 (109)
6 COG3870 Uncharacterized protei 98.8 3.4E-08 7.4E-13 79.1 8.4 84 112-213 1-108 (109)
7 PF11582 DUF3240: Protein of u 98.4 3.9E-06 8.4E-11 66.4 9.5 94 110-214 2-101 (102)
8 COG3323 Uncharacterized protei 98.0 2.1E-05 4.5E-10 63.7 7.8 82 110-192 3-91 (109)
9 PF02641 DUF190: Uncharacteriz 97.8 0.00012 2.6E-09 57.4 7.8 91 110-209 1-99 (101)
10 COG4075 Uncharacterized conser 97.1 0.0045 9.7E-08 49.9 9.1 95 110-212 2-106 (110)
11 PF10126 Nit_Regul_Hom: Unchar 96.3 0.042 9.2E-07 44.8 9.4 91 113-211 5-105 (110)
12 COG1993 PII-like signaling pro 96.0 0.039 8.5E-07 44.9 7.8 90 110-209 4-102 (109)
13 TIGR00341 conserved hypothetic 95.7 0.066 1.4E-06 50.7 9.2 82 110-213 1-83 (325)
14 PRK04164 hypothetical protein; 92.9 0.77 1.7E-05 39.9 8.8 75 113-213 93-167 (181)
15 TIGR03455 HisG_C-term ATP phos 91.0 0.4 8.6E-06 38.0 4.4 50 95-145 48-97 (100)
16 PF08029 HisG_C: HisG, C-termi 89.6 0.92 2E-05 34.4 5.2 51 94-145 23-73 (75)
17 PF08029 HisG_C: HisG, C-termi 84.5 10 0.00023 28.6 8.4 71 111-210 4-74 (75)
18 PF10035 DUF2179: Uncharacteri 81.5 4.7 0.0001 27.8 5.1 39 169-212 16-54 (55)
19 TIGR03455 HisG_C-term ATP phos 75.4 6.2 0.00014 31.2 4.7 73 110-211 27-99 (100)
20 PRK00489 hisG ATP phosphoribos 63.7 11 0.00024 34.1 4.4 52 93-145 232-283 (287)
21 PRK03817 galactokinase; Provis 59.4 39 0.00084 31.4 7.3 68 120-210 278-345 (351)
22 PF03927 NapD: NapD protein; 58.3 77 0.0017 23.8 8.0 65 115-208 8-72 (79)
23 COG4747 ACT domain-containing 56.5 68 0.0015 27.2 7.4 117 110-228 1-130 (142)
24 PF09413 DUF2007: Domain of un 54.7 24 0.00051 24.9 4.0 58 120-192 8-65 (67)
25 PRK10553 assembly protein for 54.6 1E+02 0.0022 24.0 8.1 66 115-208 10-75 (87)
26 PRK05783 hypothetical protein; 52.4 64 0.0014 25.1 6.3 58 112-194 2-65 (84)
27 cd04915 ACT_AK-Ectoine_2 ACT d 49.2 80 0.0017 22.4 6.1 50 121-193 15-64 (66)
28 PLN02245 ATP phosphoribosyl tr 49.1 29 0.00064 34.1 4.8 56 95-150 328-389 (403)
29 PRK03170 dihydrodipicolinate s 49.0 15 0.00033 33.1 2.8 88 119-208 19-106 (292)
30 PF00701 DHDPS: Dihydrodipicol 49.0 14 0.0003 33.2 2.5 86 121-208 21-106 (289)
31 cd00408 DHDPS-like Dihydrodipi 46.3 20 0.00044 31.8 3.1 88 119-208 15-102 (281)
32 PLN02245 ATP phosphoribosyl tr 45.2 55 0.0012 32.3 6.0 82 110-211 301-386 (403)
33 PF13840 ACT_7: ACT domain ; P 42.4 61 0.0013 23.0 4.6 21 171-191 45-65 (65)
34 COG3323 Uncharacterized protei 42.4 23 0.00051 29.0 2.6 30 170-200 5-34 (109)
35 PRK00555 galactokinase; Provis 42.0 92 0.002 29.4 6.9 67 119-208 289-355 (363)
36 PLN02417 dihydrodipicolinate s 41.9 25 0.00055 31.8 3.1 87 120-208 20-106 (280)
37 cd00951 KDGDH 5-dehydro-4-deox 41.4 24 0.00051 32.1 2.8 86 120-208 19-104 (289)
38 PTZ00299 homoserine kinase; Pr 40.3 90 0.0019 29.6 6.5 76 123-215 243-322 (336)
39 TIGR00674 dapA dihydrodipicoli 39.9 30 0.00065 31.2 3.2 87 120-208 17-103 (285)
40 PRK03620 5-dehydro-4-deoxygluc 37.6 30 0.00064 31.7 2.8 86 120-208 26-111 (303)
41 PF12098 DUF3574: Protein of u 36.8 69 0.0015 25.9 4.5 51 137-195 36-86 (104)
42 cd00953 KDG_aldolase KDG (2-ke 36.7 50 0.0011 29.9 4.1 85 119-208 17-101 (279)
43 PF09186 DUF1949: Domain of un 36.2 74 0.0016 21.1 4.0 29 166-194 26-54 (56)
44 KOG0333 U5 snRNP-like RNA heli 33.8 62 0.0013 33.6 4.5 89 115-211 520-627 (673)
45 cd00950 DHDPS Dihydrodipicolin 33.5 30 0.00065 30.9 2.1 88 119-208 18-105 (284)
46 PRK03926 mevalonate kinase; Pr 33.5 1.9E+02 0.0041 26.0 7.3 66 120-215 233-299 (302)
47 TIGR00683 nanA N-acetylneurami 33.1 46 0.001 30.3 3.3 87 120-208 19-106 (290)
48 cd04918 ACT_AK1-AT_2 ACT domai 33.1 1.7E+02 0.0037 20.4 5.9 50 121-193 14-63 (65)
49 cd00952 CHBPH_aldolase Trans-o 32.9 35 0.00075 31.5 2.5 88 119-208 26-113 (309)
50 PF08544 GHMP_kinases_C: GHMP 32.6 1.3E+02 0.0028 21.2 5.0 50 121-193 33-83 (85)
51 COG3062 NapD Uncharacterized p 31.2 2.8E+02 0.0061 22.3 7.4 63 117-208 13-75 (94)
52 PF02244 Propep_M14: Carboxype 29.5 85 0.0018 22.3 3.6 36 107-142 25-63 (74)
53 TIGR02313 HpaI-NOT-DapA 2,4-di 29.4 41 0.00089 30.7 2.3 87 120-208 19-105 (294)
54 PLN02451 homoserine kinase 29.2 2E+02 0.0043 27.5 6.9 68 122-214 295-364 (370)
55 PF08501 Shikimate_dh_N: Shiki 27.6 64 0.0014 24.0 2.7 31 112-142 26-56 (83)
56 PF09818 ABC_ATPase: Predicted 27.5 1.3E+02 0.0029 30.1 5.6 35 182-216 257-291 (448)
57 COG1284 Uncharacterized conser 27.0 3.4E+02 0.0073 25.4 7.9 75 117-213 208-282 (289)
58 COG3439 Uncharacterized conser 26.5 78 0.0017 26.6 3.3 85 111-207 9-103 (137)
59 COG0150 PurM Phosphoribosylami 26.4 56 0.0012 31.6 2.7 82 120-214 223-315 (345)
60 COG0329 DapA Dihydrodipicolina 26.2 71 0.0015 29.5 3.3 87 120-208 23-109 (299)
61 PF14026 DUF4242: Protein of u 26.1 1.3E+02 0.0028 22.5 4.2 39 106-144 39-77 (77)
62 PRK04194 hypothetical protein; 25.7 1.3E+02 0.0027 29.5 5.0 64 113-195 249-316 (392)
63 PRK05101 galactokinase; Provis 25.6 2.3E+02 0.005 26.9 6.7 71 120-213 308-380 (382)
64 cd00954 NAL N-Acetylneuraminic 25.3 77 0.0017 28.6 3.3 87 120-208 19-106 (288)
65 PRK04147 N-acetylneuraminate l 25.3 64 0.0014 29.3 2.8 87 120-208 22-109 (293)
66 PRK08210 aspartate kinase I; R 24.8 2.5E+02 0.0053 26.7 6.7 78 115-193 310-400 (403)
67 cd04937 ACT_AKi-DapG-BS_2 ACT 24.5 2.4E+02 0.0053 19.4 5.9 49 120-193 14-62 (64)
68 TIGR00299 conserved hypothetic 24.3 1.5E+02 0.0033 28.9 5.3 65 112-195 247-315 (382)
69 PF01709 Transcrip_reg: Transc 24.2 1E+02 0.0022 27.8 3.8 25 166-192 196-220 (234)
70 PTZ00298 mevalonate kinase; Pr 24.2 3E+02 0.0065 25.4 7.1 62 120-208 259-321 (328)
71 COG1931 Uncharacterized protei 24.0 1.6E+02 0.0035 25.2 4.7 74 114-207 4-85 (140)
72 PRK00489 hisG ATP phosphoribos 23.6 1.6E+02 0.0035 26.7 5.0 36 170-211 250-285 (287)
73 TIGR02625 YiiL_rotase L-rhamno 22.6 89 0.0019 24.9 2.8 20 125-144 25-44 (102)
74 COG0655 WrbA Multimeric flavod 22.2 65 0.0014 27.6 2.1 28 175-209 59-86 (207)
75 PF01969 DUF111: Protein of un 22.1 2.6E+02 0.0055 27.3 6.3 68 110-195 248-318 (382)
76 TIGR03249 KdgD 5-dehydro-4-deo 21.9 85 0.0018 28.6 2.9 86 120-208 24-109 (296)
77 TIGR00191 thrB homoserine kina 21.8 3.3E+02 0.0071 24.7 6.7 63 122-210 234-296 (302)
78 COG2264 PrmA Ribosomal protein 21.7 4.5E+02 0.0097 24.9 7.7 35 111-145 3-37 (300)
79 PRK09739 hypothetical protein; 21.5 3.2E+02 0.0069 23.1 6.2 34 112-146 3-44 (199)
80 COG1325 Predicted exosome subu 21.5 5.4E+02 0.012 22.3 8.7 75 113-205 10-102 (149)
81 PF02769 AIRS_C: AIR synthase 21.3 1.7E+02 0.0037 23.0 4.2 42 105-146 102-144 (153)
82 TIGR00131 gal_kin galactokinas 21.1 2.6E+02 0.0056 26.4 6.1 68 120-210 313-381 (386)
83 PTZ00290 galactokinase; Provis 21.0 2.9E+02 0.0064 27.5 6.6 67 120-210 383-451 (468)
84 cd04884 ACT_CBS C-terminal ACT 20.9 3E+02 0.0065 19.2 6.6 26 120-145 9-34 (72)
85 cd04908 ACT_Bt0572_1 N-termina 20.9 2.8E+02 0.006 19.1 4.8 31 112-142 1-33 (66)
86 TIGR00824 EIIA-man PTS system, 20.5 2.3E+02 0.0049 22.4 4.8 34 176-209 35-68 (116)
87 COG2885 OmpA Outer membrane pr 20.1 2E+02 0.0043 24.2 4.6 53 121-179 137-189 (190)
88 PF00543 P-II: Nitrogen regula 20.0 72 0.0016 24.5 1.8 25 110-134 53-77 (102)
No 1
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-39 Score=258.49 Aligned_cols=112 Identities=51% Similarity=0.826 Sum_probs=110.0
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|+|||||+|+++|++||.++|++|||+++|.|+|+|+|.++.|+|.+|..+ |+||++|+|+|+|+++|+++++|.+
T Consensus 1 MK~I~aIiRP~kl~~vkeaL~~~G~~gmTv~~V~G~G~Qkg~~e~yrg~~~~~~-~lpK~~ieIvV~de~ve~vie~I~~ 79 (112)
T COG0347 1 MKKIEAIIRPFKLDDVKEALEKAGVPGMTVTEVKGRGRQKGHTELYRGAEYEVD-FLPKVKIEIVVSDEDVDEVIEAIKK 79 (112)
T ss_pred CcEEEEEeCHHHhHHHHHHHHHcCCCceEEEeeeeecccCCccccccchhhhhh-cccceEEEEEEChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999974 9999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 192 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 192 aa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
+++||++|||||||+||++++||||||+|++||
T Consensus 80 ~a~tG~~GDGkIFV~~V~~~irIRTge~g~~al 112 (112)
T COG0347 80 AARTGKIGDGKIFVSPVEEVIRIRTGEEGEDAL 112 (112)
T ss_pred HHhcCCCCCeEEEEEEhheEEEEecCCcccccC
Confidence 999999999999999999999999999999986
No 2
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=100.00 E-value=9e-39 Score=255.91 Aligned_cols=112 Identities=46% Similarity=0.783 Sum_probs=109.1
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|+|||||+|+++|++||.++|++|||+++|+|+|+|+|..+.|+|.++.. +++||++|+++|+|+++++++++|.+
T Consensus 1 MK~I~AIIRp~kl~~v~~aL~~~G~~g~Tv~~V~G~G~q~g~~~~~~~~~~~~-~~~pK~~ieivv~D~~v~~vv~~I~~ 79 (112)
T PRK10858 1 MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMV-DFLPKVKIEIVVPDDIVDTCVDTIIR 79 (112)
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCCCeEEEEEeEecCCCCCCceeeecceeec-cceeeEEEEEEEChHhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999889999999887 49999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 192 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 192 aa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
+++||++|||||||+||++++||||||+|++|+
T Consensus 80 ~a~TG~~GDGkIfV~pV~~~vrIrTge~g~~al 112 (112)
T PRK10858 80 TAQTGKIGDGKIFVFDVARVIRIRTGEEDDAAI 112 (112)
T ss_pred HhccCCCCCcEEEEEEhhhEEEecCCCcccccC
Confidence 999999999999999999999999999999986
No 3
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=100.00 E-value=1.1e-38 Score=255.40 Aligned_cols=112 Identities=45% Similarity=0.780 Sum_probs=109.2
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|+|||||+|+++|++||.++|++|||+++|+|+|+|+|..+.|+|.++.. +++||++||++|+|+++|+++++|.+
T Consensus 1 MK~I~AIIRp~kl~~v~~AL~~~G~~g~Tv~~V~G~G~q~g~~~~~rg~~~~~-~~~~k~~ieivv~de~ve~vv~~I~~ 79 (112)
T PRK10665 1 MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSV-NFLPKVKIDVAIADDQLDEVIDIISK 79 (112)
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCCCcEEEEeeEecCCCCCCcceeccceeee-cccceEEEEEEEChHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999889999999887 49999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 192 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 192 aa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
+|+||++|||||||+||++++||||||+|++|+
T Consensus 80 ~a~TG~~GDGkIfV~pV~~~~rIrTge~g~~al 112 (112)
T PRK10665 80 AAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL 112 (112)
T ss_pred HhccCCCCCcEEEEEEhhhEEEecCCCcCcccC
Confidence 999999999999999999999999999999985
No 4
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=99.97 E-value=1.5e-31 Score=207.92 Aligned_cols=102 Identities=51% Similarity=0.794 Sum_probs=97.4
Q ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhc
Q 026531 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEAR 194 (237)
Q Consensus 115 IeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~ 194 (237)
|+|||||+|+++|++||+++|++|+|+++++|+|++.+..+.|+|..+.. ++.+|++|+++|+|+++++++++|.++++
T Consensus 1 I~aIir~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~-~~~~k~~i~ivv~d~~v~~iv~~I~~~~~ 79 (102)
T PF00543_consen 1 IEAIIRPEKLEEVIEALREAGVPGMTVSEVRGRGRQKGQAEIYRGDEYFV-EFSPKVKIEIVVPDEDVEEIVEAISEAAR 79 (102)
T ss_dssp EEEEEEGGGHHHHHHHHHHTTGSCEEEEEEEEESSTTTEEEEETTEEECC-CEEEEEEEEEEEEGGGHHHHHHHHHHHH-
T ss_pred CEEEEChhHHHHHHHHHHHCCCCeEEEEEeEEecccccccceeeeeeeee-cccccEEEEEEECHHhHHHHHHHHHHhcc
Confidence 79999999999999999999999999999999999998888899998876 48999999999999999999999999999
Q ss_pred cCCCCCeEEEEEecCcEEEcccC
Q 026531 195 TGEIGDGKIFLVPVSDVIRVRTG 217 (237)
Q Consensus 195 TGe~GDGKIFVspVedaVRIRTG 217 (237)
||++|||||||+||++++|||||
T Consensus 80 tg~~GdGkIfV~~V~~airIrTg 102 (102)
T PF00543_consen 80 TGEPGDGKIFVSPVEDAIRIRTG 102 (102)
T ss_dssp SSSTTSEEEEEEEESEEEETTTT
T ss_pred CCCCCCEEEEEEEhheEEEecCC
Confidence 99999999999999999999997
No 5
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=99.12 E-value=1.6e-10 Score=93.08 Aligned_cols=85 Identities=25% Similarity=0.413 Sum_probs=70.4
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|.|||+.+..+.+.++|.+.|+.-..++...||-+.++ ..+.|.|+|+++++++++|++
T Consensus 1 MKLiiaIVqd~Da~~l~~~L~~~g~~~TkLsstGGFLr~GN------------------tTlliGvede~v~~vl~iIk~ 62 (109)
T PF06153_consen 1 MKLIIAIVQDEDADDLSDALNENGFRVTKLSSTGGFLREGN------------------TTLLIGVEDEKVDEVLEIIKE 62 (109)
T ss_dssp -EEEEEEEEHHHHHHHHHHHHHTT--EEEEEEEETTTTEEE------------------EEEEEEEEGGGHHHHHHHHHH
T ss_pred CcEEEEEEcHhhHHHHHHHHHHCCceEEEEecccceeccCC------------------EEEEEEecHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998853 588999999999999999999
Q ss_pred HhccC------------------------CCCCeEEEEEecCcEEEc
Q 026531 192 EARTG------------------------EIGDGKIFLVPVSDVIRV 214 (237)
Q Consensus 192 aa~TG------------------------e~GDGKIFVspVedaVRI 214 (237)
.|++- +.|...|||.|||++.++
T Consensus 63 ~c~~R~~~v~~~~~~~~~~~~~~~~pveV~vGGATVFVl~Ve~f~k~ 109 (109)
T PF06153_consen 63 NCKKREQIVTPPPPISESGEMYIPYPVEVEVGGATVFVLDVEQFEKF 109 (109)
T ss_dssp HH--EEEEE-----------------EEEEE--EEEEEEE-SEEEE-
T ss_pred hhcCceeeccCCCCCCCCcccccccceEEEEcccEEEEEEHHHeeeC
Confidence 99972 257789999999999875
No 6
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.77 E-value=3.4e-08 Score=79.12 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=76.0
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|.|||+....+++.++|.+.|+....+....||-+.++ ...+|-++|++++++..+|.+
T Consensus 1 MKLiiaivqd~da~~l~~~L~d~~fraTkLAsTGGFlkaGN------------------TTfliGved~~vd~~~s~Ike 62 (109)
T COG3870 1 MKLIIAIVQDQDANELEDALTDKNFRATKLASTGGFLKAGN------------------TTFLIGVEDDRVDALRSLIKE 62 (109)
T ss_pred CeeEEEEEecccHHHHHHHHHhCCceeEEeeccCceeecCC------------------eEEEEecccchhHHHHHHHHH
Confidence 89999999999999999999999999999999999988854 478899999999999999999
Q ss_pred HhccC------------------------CCCCeEEEEEecCcEEE
Q 026531 192 EARTG------------------------EIGDGKIFLVPVSDVIR 213 (237)
Q Consensus 192 aa~TG------------------------e~GDGKIFVspVedaVR 213 (237)
+|++- +.|...+||+|||++..
T Consensus 63 ~C~~req~v~~~~~~~~sa~~yvpypveV~vggatvfv~~ve~f~~ 108 (109)
T COG3870 63 NCKSREQLVTPISPMGGSADSYVPYPVEVEVGGATVFVLPVEDFHQ 108 (109)
T ss_pred HhhhHhhccCCCCccCCCCCccccccEEEecCceEEEEecHHHhcc
Confidence 99872 26778999999998765
No 7
>PF11582 DUF3240: Protein of unknown function (DUF3240); InterPro: IPR021634 This family of proteins with unknown function appears to be restricted to Proteobacteria. ; PDB: 3CE8_A.
Probab=98.35 E-value=3.9e-06 Score=66.39 Aligned_cols=94 Identities=21% Similarity=0.421 Sum_probs=63.4
Q ss_pred cceeEEEEEECCCCHHHHHHHHHhC--CCceEEEEeeeeeccCCCCc---ccccCccceecccceeEEEEEEEcCccHHH
Q 026531 110 FHLLLISGRIRPWRVQQVSSALLNM--GIRGVTVSDVRGFGAQGGST---ERHGGSEFSEDKFVAKVKMEIVVSKDQVEG 184 (237)
Q Consensus 110 ~~MKlIeAIIRp~KLdeV~eAL~e~--GV~GmTVs~VrG~Grq~G~~---e~yrG~e~~vd~~vpKvkIEIVV~De~VE~ 184 (237)
.++.+++.|+++.-=|++.+.|.+. +++|+|.+++.|+|+..... |.-+| ....+++++++++++++.
T Consensus 2 ~~~~~LtLi~~~~led~lvD~Ll~~~~~v~GFt~~~~~g~g~~~~~~s~~EQV~G-------~~~~~~~~~~~~~~~~~~ 74 (102)
T PF11582_consen 2 SQDVLLTLIVPPELEDALVDYLLELPDGVSGFTSSPAEGHGSRHSLLSAAEQVSG-------RARRVRFQVILPEEDAEE 74 (102)
T ss_dssp -SEEEEEEEEEGGGHHHHHHHHTT--TT----EEEEEEEEE-------------E-------EEEEEEEEEEEEGGGHHH
T ss_pred CccEEEEEECCHHHHHHHHHHHHHhcCccCCceEeeccccCCcccCCCHHHhccc-------ccceEEEEEEECHHHHHH
Confidence 4567899999999999999999999 67999999999999875421 12222 356799999999999999
Q ss_pred HHHHHHHHhccCCCCCe-EEEEEecCcEEEc
Q 026531 185 VIDKIMEEARTGEIGDG-KIFLVPVSDVIRV 214 (237)
Q Consensus 185 VVEaI~eaa~TGe~GDG-KIFVspVedaVRI 214 (237)
+++++++... |.| +-||+||.++-+|
T Consensus 75 Ll~~L~~~~~----~~~i~ywv~Pv~~~G~l 101 (102)
T PF11582_consen 75 LLAALKQEFA----GTGIRYWVTPVIEFGRL 101 (102)
T ss_dssp HHHHHHHHTT----TS--EEEEEE-S-----
T ss_pred HHHHHHHHcC----CCCcEEEEEhHHhCccc
Confidence 9999998875 444 8899999987665
No 8
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=2.1e-05 Score=63.73 Aligned_cols=82 Identities=26% Similarity=0.182 Sum_probs=69.1
Q ss_pred cceeEEEEEECCCCHHHHHHHHHhCCCc-------eEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccH
Q 026531 110 FHLLLISGRIRPWRVQQVSSALLNMGIR-------GVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQV 182 (237)
Q Consensus 110 ~~MKlIeAIIRp~KLdeV~eAL~e~GV~-------GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~V 182 (237)
..|.+|..+|+.+.++.|++||.++|+. ++--++++|..++......+-|.--.+ +.....|||++|+++..
T Consensus 3 ~~~~K~~vyVP~~~~e~vr~aL~~aGag~iG~Y~~C~~~~~g~G~frP~egAnP~iGevgk~-e~v~E~kiE~v~~~~~~ 81 (109)
T COG3323 3 EPLYKIEVYVPEEYVEQVRDALFEAGAGHIGNYDHCTFSSEGTGQFRPLEGANPFIGEVGKL-EFVAEVKIEFVVPAELR 81 (109)
T ss_pred cceeEEEEEeCHHHHHHHHHHHHhcCCcceeccceEEEEeeeeEEEeecCCCCCcccccceE-EeeeeeEEEEEcCHHHH
Confidence 3589999999999999999999999875 556668889989877667777765444 47889999999999999
Q ss_pred HHHHHHHHHH
Q 026531 183 EGVIDKIMEE 192 (237)
Q Consensus 183 E~VVEaI~ea 192 (237)
+.++.+|+++
T Consensus 82 ~~v~~~ik~a 91 (109)
T COG3323 82 AAVLSAIKKA 91 (109)
T ss_pred HHHHHHHHHh
Confidence 9999999765
No 9
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=97.78 E-value=0.00012 Score=57.44 Aligned_cols=91 Identities=23% Similarity=0.285 Sum_probs=62.2
Q ss_pred cceeEEEEEECCCC-------HHHHHHHHHhCCCceEEEEe-eeeeccCCCCcccccCccceecccceeEEEEEEEcCcc
Q 026531 110 FHLLLISGRIRPWR-------VQQVSSALLNMGIRGVTVSD-VRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQ 181 (237)
Q Consensus 110 ~~MKlIeAIIRp~K-------LdeV~eAL~e~GV~GmTVs~-VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~ 181 (237)
++.+++.+++.... .+.+.+.|++.|+.|.|++. +.|+|..+-.. ..+-.+.+ .-.-+.||++-++|+
T Consensus 1 ~~~~~Lriy~~e~~~~~g~~l~~~ll~~~~~~gi~GaTV~rgi~G~G~~~~ih-~~~~~~l~---~~lPvvIe~id~~ek 76 (101)
T PF02641_consen 1 MKAKLLRIYLSESDRWGGKPLYEWLLERAREAGIAGATVFRGIEGFGSSGRIH-SARLLELS---DDLPVVIEFIDTEEK 76 (101)
T ss_dssp SSEEEEEEEEETT-EETTEEHHHHHHHHHHHTT-SEEEEEE-SEEEE--------------T---TS-EEEEEEEEEHHH
T ss_pred CceEEEEEEEcCccccCceEHHHHHHHHHHHCCCCeEEEEcceeeeCCCCccc-ccchhhhc---CCCCEEEEEEcCHHH
Confidence 46789999997754 78999999999999999995 89999875321 11111111 122369999999999
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEEecC
Q 026531 182 VEGVIDKIMEEARTGEIGDGKIFLVPVS 209 (237)
Q Consensus 182 VE~VVEaI~eaa~TGe~GDGKIFVspVe 209 (237)
++.+++.+.+... +|.|.+.||+
T Consensus 77 i~~~l~~l~~~~~-----~glit~~~v~ 99 (101)
T PF02641_consen 77 IEAFLPELKELVK-----DGLITLEDVE 99 (101)
T ss_dssp HHHHHHHHCTT-S-----SSEEEEEEEE
T ss_pred HHHHHHHHHHHcC-----CCEEEEEEEE
Confidence 9999999876654 4899998875
No 10
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=97.12 E-value=0.0045 Score=49.95 Aligned_cols=95 Identities=20% Similarity=0.293 Sum_probs=75.3
Q ss_pred cceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceec---------ccce-eEEEEEEEcC
Q 026531 110 FHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSED---------KFVA-KVKMEIVVSK 179 (237)
Q Consensus 110 ~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd---------~~vp-KvkIEIVV~D 179 (237)
..|+++..+|.++.+..+++++.+.|++|+-+.+=+|...++ +.|.+..+| ++.. -+.|-.||++
T Consensus 2 ~mkv~l~lFVe~eNvGkaiN~mad~GiTGFfl~eYrGvsPd~-----wkgf~~~EDpE~aik~i~D~s~~AVlI~tVV~E 76 (110)
T COG4075 2 TMKVLLRLFVEEENVGKAINIMADAGITGFFLHEYRGVSPDK-----WKGFSKEEDPESAIKAIRDLSDKAVLIGTVVKE 76 (110)
T ss_pred ceeEeEEEEecHHHHHHHHHHHHhcCcceEEEEEecCcChhH-----hcCcccccCHHHHHHHHHHhhhceEEEEEecCH
Confidence 467899999999999999999999999999999999988653 334433332 2333 4788899999
Q ss_pred ccHHHHHHHHHHHhccCCCCCeEEEEEecCcEE
Q 026531 180 DQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVI 212 (237)
Q Consensus 180 e~VE~VVEaI~eaa~TGe~GDGKIFVspVedaV 212 (237)
+.++++.+.+.+-... .--.|..+|+++.+
T Consensus 77 e~vekie~~~~Ekla~---eryTIi~ipI~~I~ 106 (110)
T COG4075 77 EKVEKIEELLKEKLAN---ERYTIIEIPIEKII 106 (110)
T ss_pred HHHHHHHHHHHHHhcC---CceEEEEeeeeeEE
Confidence 9999999999887764 23578888988764
No 11
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=96.32 E-value=0.042 Score=44.78 Aligned_cols=91 Identities=22% Similarity=0.327 Sum_probs=71.6
Q ss_pred eEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceec---------cc-ceeEEEEEEEcCccH
Q 026531 113 LLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSED---------KF-VAKVKMEIVVSKDQV 182 (237)
Q Consensus 113 KlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd---------~~-vpKvkIEIVV~De~V 182 (237)
.++..+|..+.+..++.||.+.|++|+-+.+-+|...+. +.|....+| ++ -+-+.|-.||+++.+
T Consensus 5 vl~klFVe~eNlGKaINaLte~GITGFyl~eYkGmSP~~-----wkgf~l~EDpe~ai~~I~d~s~~aV~I~TVV~~~~~ 79 (110)
T PF10126_consen 5 VLLKLFVESENLGKAINALTEGGITGFYLHEYKGMSPQD-----WKGFLLDEDPEMAIKAINDLSENAVLIGTVVDEEKV 79 (110)
T ss_pred EEEEEEEehhHHHHHHHHHHhcCccEEEeEeecCCChHH-----hcCcccccCHHHHHHHHHHhccCcEEEEEEECHHHH
Confidence 467889999999999999999999999999999998664 233322222 23 356899999999999
Q ss_pred HHHHHHHHHHhccCCCCCeEEEEEecCcE
Q 026531 183 EGVIDKIMEEARTGEIGDGKIFLVPVSDV 211 (237)
Q Consensus 183 E~VVEaI~eaa~TGe~GDGKIFVspVeda 211 (237)
+.+.+.|.+.... -.-.|...||...
T Consensus 80 ~~i~~~i~ekL~~---eryTii~iPi~~i 105 (110)
T PF10126_consen 80 EKIEKLIKEKLKN---ERYTIIEIPILGI 105 (110)
T ss_pred HHHHHHHHHHhcC---CceEEEEeeEEEE
Confidence 9999999998874 3346777777653
No 12
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=96.02 E-value=0.039 Score=44.95 Aligned_cols=90 Identities=24% Similarity=0.343 Sum_probs=64.0
Q ss_pred cceeEEEEEECCCC-------HHHHHHHHHhCCCceEEEEe-eeeeccCCCCc-ccccCccceecccceeEEEEEEEcCc
Q 026531 110 FHLLLISGRIRPWR-------VQQVSSALLNMGIRGVTVSD-VRGFGAQGGST-ERHGGSEFSEDKFVAKVKMEIVVSKD 180 (237)
Q Consensus 110 ~~MKlIeAIIRp~K-------LdeV~eAL~e~GV~GmTVs~-VrG~Grq~G~~-e~yrG~e~~vd~~vpKvkIEIVV~De 180 (237)
..++++.+++..+. .+.+.+-|++.|+.|.|+.. +.|||+.+-.+ ......... + =+.||+|=.++
T Consensus 4 ~~~~lLrIy~~E~d~~eGkp~~~~iverlre~Gi~GATVlRGI~GfG~~~~~h~~~if~Ls~~----L-PVviEvVD~ee 78 (109)
T COG1993 4 MKSKLLRIYLGENDKHEGKPLYEAIVERLREEGIRGATVLRGIAGFGKDGKIHGSKIFRLSTD----L-PVVVEVVDEEE 78 (109)
T ss_pred ccceeeEEEEccccccCCeEHHHHHHHHHHHcCcCceeeeeeeeccCCCCcccccchhhccCC----C-CEEEEEeCCHH
Confidence 35678888886554 34599999999999999995 99999886322 111111111 1 27889998899
Q ss_pred cHHHHHHHHHHHhccCCCCCeEEEEEecC
Q 026531 181 QVEGVIDKIMEEARTGEIGDGKIFLVPVS 209 (237)
Q Consensus 181 ~VE~VVEaI~eaa~TGe~GDGKIFVspVe 209 (237)
.++..++.+.+.-+ +|.|..-||+
T Consensus 79 kI~~~l~~l~e~~~-----~~lit~e~v~ 102 (109)
T COG1993 79 KIERFLPELDEIIK-----NGLITLEPVE 102 (109)
T ss_pred HHHHHHHHHHHHhh-----cceEEEEEEE
Confidence 99999999988755 4666666654
No 13
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=95.72 E-value=0.066 Score=50.70 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=60.5
Q ss_pred cceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHH
Q 026531 110 FHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKI 189 (237)
Q Consensus 110 ~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI 189 (237)
++|+.|+++|+.++.+.+.+.|++.+-.+....... .+ ......+.+.++++++|++++.+
T Consensus 1 m~mRliev~iP~~~~~~v~~~l~~~~~~~i~~~~~~---~~----------------~~~~~~i~~~v~~~~~e~vld~L 61 (325)
T TIGR00341 1 GRHRTNDCLIPKEGVVMRKEIVRGEDLEEIAIELGD---KT----------------FIYDDRIELYVQDSDTEKIVSRL 61 (325)
T ss_pred CCceEEEEEeccchHHHHHHHHhccCcccceEEecc---CC----------------CCcceEEEEEcChhhHHHHHHHH
Confidence 579999999999999999999988766555433211 01 11225899999999999999999
Q ss_pred HHHhccCCCCCeEEEE-EecCcEEE
Q 026531 190 MEEARTGEIGDGKIFL-VPVSDVIR 213 (237)
Q Consensus 190 ~eaa~TGe~GDGKIFV-spVedaVR 213 (237)
++.+ -++ ||.+-+ .++|-++-
T Consensus 62 ~~lg-l~~--~~~~~vv~~~e~v~s 83 (325)
T TIGR00341 62 KDKL-LGY--KESIIVVYKPEFVIS 83 (325)
T ss_pred HHcC-CCC--CCcEEEEeccceecC
Confidence 9886 444 445555 68887774
No 14
>PRK04164 hypothetical protein; Provisional
Probab=92.93 E-value=0.77 Score=39.89 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=56.3
Q ss_pred eEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHH
Q 026531 113 LLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEE 192 (237)
Q Consensus 113 KlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~ea 192 (237)
..+. ||.++.-+++.+.|++.| .|.|+.++.|. + + ++..++++|+..++.++.+.|.+.
T Consensus 93 ~~v~-IIT~~~~~~i~~~Lr~~g-rGVT~~~g~G~--~-~----------------~r~vL~~Vv~R~e~~~L~~iI~~i 151 (181)
T PRK04164 93 ITVR-VITKEYELELANELRELG-YGVTVFDAEGR--D-G----------------PRMVLFILTKRKREKELLEIIKEL 151 (181)
T ss_pred CEEE-EEeCCchHHHHHHHHHCC-CCEEEEEEEEC--C-C----------------CEEEEEEEEcHHHHHHHHHHHHHH
Confidence 3444 444444456999999987 89999988776 2 1 246899999999999999999888
Q ss_pred hccCCCCCeEEEEEecCcEEE
Q 026531 193 ARTGEIGDGKIFLVPVSDVIR 213 (237)
Q Consensus 193 a~TGe~GDGKIFVspVedaVR 213 (237)
--. ..|-|+++.++.+
T Consensus 152 DP~-----AFi~v~dv~~V~G 167 (181)
T PRK04164 152 DPK-----AFIISYEPRSFKG 167 (181)
T ss_pred CCC-----eEEEEEeCeEEEc
Confidence 542 6777777777753
No 15
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=90.99 E-value=0.4 Score=38.01 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=45.6
Q ss_pred CCCCCCccccchhcccceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 026531 95 FPFFPSPLLSSMYFFFHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVR 145 (237)
Q Consensus 95 ~~~~~~~~~~~~~~~~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~Vr 145 (237)
.|-+-+|-.|..| --.+.-+.++|+.+.+.++.+.|+++|..|++++++.
T Consensus 48 lPg~~~PTVs~l~-~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~~i~ 97 (100)
T TIGR03455 48 LPGLEGPTVSPLA-DEGWVAVHAVVDEKVVNELIDKLKAAGARDILVLPIE 97 (100)
T ss_pred cCCCCCCCcCcCC-CCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEechH
Confidence 4999999999987 5679999999999999999999999999999998764
No 16
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=89.60 E-value=0.92 Score=34.35 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=40.1
Q ss_pred cCCCCCCccccchhcccceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 026531 94 LFPFFPSPLLSSMYFFFHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVR 145 (237)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~Vr 145 (237)
+.|-..+|-.|..+= -.+.-|.++|..+.+.++.+.|+++|..|+.++++.
T Consensus 23 ilPg~~~PTVs~L~~-~~w~AV~~vV~~~~~~~~~~~Lk~~GA~~Ilv~pi~ 73 (75)
T PF08029_consen 23 ILPGLKSPTVSPLAD-EDWVAVHAVVPEKQVWDLMDKLKAAGASDILVLPIE 73 (75)
T ss_dssp HS--SSS-EEEE-SS-TTEEEEEEEEECCCHHHHHHHHHCTT-EEEEEEE-S
T ss_pred hCCCCCCCceeecCC-CCEEEEEEEecHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 678889999988822 469999999999999999999999999999998864
No 17
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=84.53 E-value=10 Score=28.63 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=51.8
Q ss_pred ceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHH
Q 026531 111 HLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIM 190 (237)
Q Consensus 111 ~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~ 190 (237)
+++++..=++.++++++.+.| -|..|=||+.+ +.+ .-+-|.++|+.+++-++++.++
T Consensus 4 ~~~~l~~Nvp~~~l~~v~~il--Pg~~~PTVs~L---~~~------------------~w~AV~~vV~~~~~~~~~~~Lk 60 (75)
T PF08029_consen 4 GYVLLMMNVPRESLEEVIKIL--PGLKSPTVSPL---ADE------------------DWVAVHAVVPEKQVWDLMDKLK 60 (75)
T ss_dssp CEEEEEEEEECCCHHHHHHHS----SSS-EEEE----SST------------------TEEEEEEEEECCCHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHhC--CCCCCCceeec---CCC------------------CEEEEEEEecHHHHHHHHHHHH
Confidence 578888889999999999844 36788899988 111 1257899999999999999998
Q ss_pred HHhccCCCCCeEEEEEecCc
Q 026531 191 EEARTGEIGDGKIFLVPVSD 210 (237)
Q Consensus 191 eaa~TGe~GDGKIFVspVed 210 (237)
+++-+ =|.|+|++.
T Consensus 61 ~~GA~------~Ilv~pi~~ 74 (75)
T PF08029_consen 61 AAGAS------DILVLPIEK 74 (75)
T ss_dssp CTT-E------EEEEEE-S-
T ss_pred HcCCC------EEEEEeccc
Confidence 88553 588999875
No 18
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=81.53 E-value=4.7 Score=27.82 Aligned_cols=39 Identities=26% Similarity=0.213 Sum_probs=24.3
Q ss_pred eeEEEEEEEcCccHHHHHHHHHHHhccCCCCCeEEEEEecCcEE
Q 026531 169 AKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVI 212 (237)
Q Consensus 169 pKvkIEIVV~De~VE~VVEaI~eaa~TGe~GDGKIFVspVedaV 212 (237)
++.+|+++|+..++..+.+.|.+.-- +..|.|.++.++.
T Consensus 16 ~~~~l~~v~~r~e~~~l~~~I~~~Dp-----~AFi~v~~v~~v~ 54 (55)
T PF10035_consen 16 EKTVLYTVVSRRELPKLKKIIKEIDP-----KAFISVSDVSEVY 54 (55)
T ss_dssp --EEEEEEEECCHHHHHHHHHHCC-T-----T-EEEE-------
T ss_pred CeEEEEEEEeHHHHHHHHHHHHHhCC-----CEEEEEEccEEeE
Confidence 45799999999999999999987633 3677777777654
No 19
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=75.37 E-value=6.2 Score=31.22 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=56.3
Q ss_pred cceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHH
Q 026531 110 FHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKI 189 (237)
Q Consensus 110 ~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI 189 (237)
..+++|..-++.++++++.+.| -|..|=||+...+ . .-+-|..+|+.+++-++++.+
T Consensus 27 ~~~~~v~~Nvp~~~l~~v~~il--Pg~~~PTVs~l~~---~------------------~w~AV~~vv~~~~v~~~~~~L 83 (100)
T TIGR03455 27 RGKVLLMMNVPRDNLDEVRALL--PGLEGPTVSPLAD---E------------------GWVAVHAVVDEKVVNELIDKL 83 (100)
T ss_pred hheeEEEEeCChhhHHHHHHhc--CCCCCCCcCcCCC---C------------------CeEEEEEEEcHHHHHHHHHHH
Confidence 5689999999999999999965 5666666665431 0 125789999999999999999
Q ss_pred HHHhccCCCCCeEEEEEecCcE
Q 026531 190 MEEARTGEIGDGKIFLVPVSDV 211 (237)
Q Consensus 190 ~eaa~TGe~GDGKIFVspVeda 211 (237)
++++- --|.|+|++.+
T Consensus 84 k~~GA------~~Ilv~~i~~~ 99 (100)
T TIGR03455 84 KAAGA------RDILVLPIEKC 99 (100)
T ss_pred HHcCC------CeEEEechHHh
Confidence 88854 46889998753
No 20
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=63.74 E-value=11 Score=34.11 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=43.4
Q ss_pred hcCCCCCCccccchhcccceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 026531 93 LLFPFFPSPLLSSMYFFFHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVR 145 (237)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~Vr 145 (237)
-+.|-.-+|-.+..+ --.+.-|.++|+.+.+.++++.|+++|..|+.++++.
T Consensus 232 ~~~p~~~~ptv~~~~-~~~~~av~~~~~~~~~~~~~~~l~~~ga~~i~~~~i~ 283 (287)
T PRK00489 232 ALLPGLESPTVSPLG-DEGWVAVHAVVPEDLVWELMDKLKALGARGILVLPIE 283 (287)
T ss_pred HhCCCCCCCcccCCC-CCCeEEEEEEECHHHHHHHHHHHHHcCCCeEEEechH
Confidence 345888888776544 2358999999999999999999999999999998764
No 21
>PRK03817 galactokinase; Provisional
Probab=59.36 E-value=39 Score=31.35 Aligned_cols=68 Identities=24% Similarity=0.276 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
....+|++.++.++.|+-|..++-. |.. | .+..++++++.+++.+.+.+........
T Consensus 278 s~p~ld~l~~~a~~~GalGaklsGa---G~G-g-------------------~vlal~~~~~~~~~~~~l~~~~~~~~~~ 334 (351)
T PRK03817 278 SCEELDFFVEFALELGAYGARLTGA---GFG-G-------------------SAIALVDKGKFESIGEELLEEYKKRFGI 334 (351)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEecC---CCC-e-------------------EEEEEEchHHHHHHHHHHHHHHHHhcCC
Confidence 5678999999999999999887633 322 2 2344577888999999998876443344
Q ss_pred CeEEEEEecCc
Q 026531 200 DGKIFLVPVSD 210 (237)
Q Consensus 200 DGKIFVspVed 210 (237)
+..+|+++..+
T Consensus 335 ~~~~~~~~~~~ 345 (351)
T PRK03817 335 DPKYFVVESSD 345 (351)
T ss_pred CCcEEEEecCC
Confidence 66788887643
No 22
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=58.34 E-value=77 Score=23.83 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=45.4
Q ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhc
Q 026531 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEAR 194 (237)
Q Consensus 115 IeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~ 194 (237)
+..-++|+++++|+++|.++ +|.-+ .|.... | ||-++++.+..+.+.+.+.+...
T Consensus 8 ~vV~~~p~~~~~v~~~l~~~--~gvEV---h~~~~~-G-------------------KiVVtiE~~~~~~~~~~~~~i~~ 62 (79)
T PF03927_consen 8 LVVHARPERLEEVAEALAAI--PGVEV---HAVDED-G-------------------KIVVTIEAESSEEEVDLIDAINA 62 (79)
T ss_dssp EEEEE-CCCHHHHHHHHCCS--TTEEE---EEEETT-T-------------------EEEEEEEESSHHHHHHHHHHHCC
T ss_pred EEEEECchhHHHHHHHHHcC--CCcEE---EeeCCC-C-------------------eEEEEEEeCChHHHHHHHHHHHc
Confidence 44556999999999999875 55533 333333 2 78888999999999999988765
Q ss_pred cCCCCCeEEEEEec
Q 026531 195 TGEIGDGKIFLVPV 208 (237)
Q Consensus 195 TGe~GDGKIFVspV 208 (237)
. +|.+=++.|
T Consensus 63 l----~GVlsa~lv 72 (79)
T PF03927_consen 63 L----PGVLSASLV 72 (79)
T ss_dssp S----TTEEEEEES
T ss_pred C----CCceEEEEE
Confidence 3 456655544
No 23
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=56.48 E-value=68 Score=27.25 Aligned_cols=117 Identities=26% Similarity=0.324 Sum_probs=70.5
Q ss_pred cceeEEEEEE--CCCCHHHHHHHHHhCCC--ceEEEEeeeeeccCCC----CcccccCccceecccceeEEEEEEEcCcc
Q 026531 110 FHLLLISGRI--RPWRVQQVSSALLNMGI--RGVTVSDVRGFGAQGG----STERHGGSEFSEDKFVAKVKMEIVVSKDQ 181 (237)
Q Consensus 110 ~~MKlIeAII--Rp~KLdeV~eAL~e~GV--~GmTVs~VrG~Grq~G----~~e~yrG~e~~vd~~vpKvkIEIVV~De~ 181 (237)
++.|.|..+. +|+++..+.++|.++|+ ..+|+.+..-||--.- ..+.++- +.+..|.-+++=-+-|+-++
T Consensus 1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A~~~--Lee~gF~Vr~~dVlaVEmeD 78 (142)
T COG4747 1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEAHSV--LEEAGFTVRETDVLAVEMED 78 (142)
T ss_pred CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHHHHH--HHHCCcEEEeeeEEEEEecC
Confidence 3568898888 89999999999999985 5899988877774211 0111111 11112443444445555566
Q ss_pred HHHHHHHHHHHhccCCC--CCeEEEEEecCcEEEc-cc--CCcchhhhhcCC
Q 026531 182 VEGVIDKIMEEARTGEI--GDGKIFLVPVSDVIRV-RT--GERGEKAERMAG 228 (237)
Q Consensus 182 VE~VVEaI~eaa~TGe~--GDGKIFVspVedaVRI-RT--GE~Ge~Al~~~~ 228 (237)
+.--+..|.++...... .=--.||+.=+.|+-| || -+++.+|++.+|
T Consensus 79 ~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~g 130 (142)
T COG4747 79 VPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAG 130 (142)
T ss_pred CCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcC
Confidence 66666666666554222 1123466666665543 44 456678888887
No 24
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=54.69 E-value=24 Score=24.86 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHH
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEE 192 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~ea 192 (237)
.+...+-++..|.+.|++.+...+-.+.. .| +.|. .. -+++.|++++.++..++|.+.
T Consensus 8 ~~~ea~~i~~~L~~~gI~~~v~~~~~~~~--~g----~~g~-------~~--~~~v~V~~~d~~~A~~il~~~ 65 (67)
T PF09413_consen 8 DPIEAELIKGLLEENGIPAFVKNEHMSGY--AG----EPGT-------GG--QVEVYVPEEDYERAREILEEF 65 (67)
T ss_dssp -HHHHHHHHHHHHHTT--EE--S----SS---------S---------SS--SEEEEEEGGGHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCccchh--hc----ccCc-------cC--ceEEEECHHHHHHHHHHHHHh
Confidence 45567789999999999987764321111 11 0010 01 188999999999999988653
No 25
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=54.56 E-value=1e+02 Score=24.00 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=46.2
Q ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhc
Q 026531 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEAR 194 (237)
Q Consensus 115 IeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~ 194 (237)
+.+-++|+++++|+++|.++ +|. ++-+.-.+. =||-++++.+..+.+++.|...-.
T Consensus 10 lVV~~~Pe~~~~V~~~l~~i--pg~---Evh~~d~~~-------------------GKiVVtiE~~~~~~~~~~i~~I~~ 65 (87)
T PRK10553 10 LVVQAKSERISDISTQLNAF--PGC---EVAVSDAPS-------------------GQLIVVVEAEDSETLLQTIESVRN 65 (87)
T ss_pred EEEEeChHHHHHHHHHHHcC--CCc---EEEeecCCC-------------------CeEEEEEEeCChHHHHHHHHHHHc
Confidence 45567999999999999987 222 222222222 278889999999999999988866
Q ss_pred cCCCCCeEEEEEec
Q 026531 195 TGEIGDGKIFLVPV 208 (237)
Q Consensus 195 TGe~GDGKIFVspV 208 (237)
. +|.+-++-|
T Consensus 66 l----~GVlsa~lV 75 (87)
T PRK10553 66 V----EGVLAVSLV 75 (87)
T ss_pred C----CCceEEEEE
Confidence 4 455555544
No 26
>PRK05783 hypothetical protein; Provisional
Probab=52.43 E-value=64 Score=25.06 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=34.6
Q ss_pred eeEEEEEE--CCCCH----HHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHH
Q 026531 112 LLLISGRI--RPWRV----QQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGV 185 (237)
Q Consensus 112 MKlIeAII--Rp~KL----deV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~V 185 (237)
|.+++.+| +++-+ ..|.+||...|+.+ +.+|| .| ..+++-+++++.+++
T Consensus 2 ~~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~--V~~VR-vG----------------------K~iel~l~~~~~e~a 56 (84)
T PRK05783 2 KYYVELIIINKDSVRDPEGETIQRYVIERYTGN--IIEVR-AG----------------------KYLVFKIEANSPEEA 56 (84)
T ss_pred cEEEEEEEEECCCCcCchHHHHHHHHHHcCCCC--cceEE-ee----------------------EEEEEEEcCCCHHHH
Confidence 34455555 55544 46999999998877 55554 22 245566666655555
Q ss_pred HHHHHHHhc
Q 026531 186 IDKIMEEAR 194 (237)
Q Consensus 186 VEaI~eaa~ 194 (237)
.+.+.+.|.
T Consensus 57 ~~~v~~mc~ 65 (84)
T PRK05783 57 KELALKIAR 65 (84)
T ss_pred HHHHHHHHH
Confidence 555555554
No 27
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=49.25 E-value=80 Score=22.38 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHh
Q 026531 121 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEA 193 (237)
Q Consensus 121 p~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa 193 (237)
++-..++.++|.+.|+.=..++.. ..+..|.++|++++.++++++|.+..
T Consensus 15 ~gv~~ki~~~L~~~~I~v~~i~~~-----------------------~s~~~is~~V~~~~~~~av~~Lh~~f 64 (66)
T cd04915 15 PGVLARGLAALAEAGIEPIAAHQS-----------------------MRNVDVQFVVDRDDYDNAIKALHAAL 64 (66)
T ss_pred chHHHHHHHHHHHCCCCEEEEEec-----------------------CCeeEEEEEEEHHHHHHHHHHHHHHH
Confidence 344566677777777665444321 12368999999999999999998764
No 28
>PLN02245 ATP phosphoribosyl transferase
Probab=49.08 E-value=29 Score=34.11 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=47.2
Q ss_pred CCCCCCccccchhcc------cceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccC
Q 026531 95 FPFFPSPLLSSMYFF------FHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQ 150 (237)
Q Consensus 95 ~~~~~~~~~~~~~~~------~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq 150 (237)
.|-.-+|-.|..|-. -.+.-|.++|....+.++++.|+++|..|+.++++.-.-..
T Consensus 328 lPG~~~PTVspl~~~~~~~~~~~w~AV~~vV~~~~v~~~~~~Lk~~GA~~IlV~pI~yvf~~ 389 (403)
T PLN02245 328 LSGLQGPTISPVYCKRDGKVAVDYYAIVICVPKKALYESVQQLRKIGGSGVLVSPLTYIFDE 389 (403)
T ss_pred CCCCCCCccccccccccccCCCCEEEEEEEEcHHHHHHHHHHHHHcCCCeEEEEcceeeecC
Confidence 577789999997632 26899999999999999999999999999999987654443
No 29
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=49.03 E-value=15 Score=33.07 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=63.2
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-+-.+...+....++.|.+-|.....++.++.++.+.+.|-
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~- 97 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGA- 97 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCC-
Confidence 4667788899999999999999987777776655445444444333222345778888888899999999988887654
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|.
T Consensus 98 -d~v~~~pP~ 106 (292)
T PRK03170 98 -DGALVVTPY 106 (292)
T ss_pred -CEEEECCCc
Confidence 667766664
No 30
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=49.03 E-value=14 Score=33.23 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCCC
Q 026531 121 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGD 200 (237)
Q Consensus 121 p~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~GD 200 (237)
.+.+.+..+.|.+.|+.|+.+.-..|-+...-..|+.+-.+...+....++.|.+-|.....+++++.++.+-..|- |
T Consensus 21 ~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Ga--d 98 (289)
T PF00701_consen 21 EDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGA--D 98 (289)
T ss_dssp HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT---S
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCc--e
Confidence 34456777888899999999976666665543333322222222223457889999999999999999999887664 6
Q ss_pred eEEEEEec
Q 026531 201 GKIFLVPV 208 (237)
Q Consensus 201 GKIFVspV 208 (237)
|.+.+.|.
T Consensus 99 ~v~v~~P~ 106 (289)
T PF00701_consen 99 AVLVIPPY 106 (289)
T ss_dssp EEEEEEST
T ss_pred EEEEeccc
Confidence 78877774
No 31
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=46.33 E-value=20 Score=31.83 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=62.0
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-+-.+...+....++.|.+-|.....++.++..+.+...|-
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Ga- 93 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGA- 93 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCC-
Confidence 3677788899999999999998887777776654444333333322222346788888889899999999888877654
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|.
T Consensus 94 -d~v~v~pP~ 102 (281)
T cd00408 94 -DGVLVVPPY 102 (281)
T ss_pred -CEEEECCCc
Confidence 566666664
No 32
>PLN02245 ATP phosphoribosyl transferase
Probab=45.19 E-value=55 Score=32.26 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=61.9
Q ss_pred cceeEEEEEECCCCHHHHHHHHHh----CCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHH
Q 026531 110 FHLLLISGRIRPWRVQQVSSALLN----MGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGV 185 (237)
Q Consensus 110 ~~MKlIeAIIRp~KLdeV~eAL~e----~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~V 185 (237)
..+++|.+=++.++++++.+.+.. -|..|=||+.+.|.....+ + ..-+-|.++|+++++-++
T Consensus 301 ~~~~~v~~Nvp~~~le~v~~~~~~~~~lPG~~~PTVspl~~~~~~~~------~--------~~w~AV~~vV~~~~v~~~ 366 (403)
T PLN02245 301 EGQFTVTANMRGSSAEEVAERVLSQPSLSGLQGPTISPVYCKRDGKV------A--------VDYYAIVICVPKKALYES 366 (403)
T ss_pred hcEEEEEecCChhhHHHHHHhhhccccCCCCCCCccccccccccccC------C--------CCEEEEEEEEcHHHHHHH
Confidence 558899999999999999999755 4888889998754321110 0 112578999999999999
Q ss_pred HHHHHHHhccCCCCCeEEEEEecCcE
Q 026531 186 IDKIMEEARTGEIGDGKIFLVPVSDV 211 (237)
Q Consensus 186 VEaI~eaa~TGe~GDGKIFVspVeda 211 (237)
++.+++++.. =|-|+|++=+
T Consensus 367 ~~~Lk~~GA~------~IlV~pI~yv 386 (403)
T PLN02245 367 VQQLRKIGGS------GVLVSPLTYI 386 (403)
T ss_pred HHHHHHcCCC------eEEEEcceee
Confidence 9999988554 5778887644
No 33
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=42.40 E-value=61 Score=23.02 Aligned_cols=21 Identities=19% Similarity=0.555 Sum_probs=18.6
Q ss_pred EEEEEEEcCccHHHHHHHHHH
Q 026531 171 VKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~e 191 (237)
..+.++|+++++++.++++.+
T Consensus 45 ~~~~ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 45 ISISILVKEEDLEKAVEALHE 65 (65)
T ss_dssp SEEEEEEEGGGHHHHHHHHHH
T ss_pred eeEEEEEeHHHHHHHHHHhcC
Confidence 478899999999999999874
No 34
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.39 E-value=23 Score=29.03 Aligned_cols=30 Identities=37% Similarity=0.604 Sum_probs=24.9
Q ss_pred eEEEEEEEcCccHHHHHHHHHHHhccCCCCC
Q 026531 170 KVKMEIVVSKDQVEGVIDKIMEEARTGEIGD 200 (237)
Q Consensus 170 KvkIEIVV~De~VE~VVEaI~eaa~TGe~GD 200 (237)
-.|+++.|+++.++.+-+++.+++ .|+.||
T Consensus 5 ~~K~~vyVP~~~~e~vr~aL~~aG-ag~iG~ 34 (109)
T COG3323 5 LYKIEVYVPEEYVEQVRDALFEAG-AGHIGN 34 (109)
T ss_pred eeEEEEEeCHHHHHHHHHHHHhcC-Ccceec
Confidence 469999999999999999997764 366665
No 35
>PRK00555 galactokinase; Provisional
Probab=41.97 E-value=92 Score=29.45 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=48.4
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|....+|.+.+++++.|+.|..++-. |+| | -+..+|+++.++++.+.+.+.-.....
T Consensus 289 vS~~~ld~l~~~a~~~Ga~GaklsGa-G~G---g-------------------~vial~~~~~~~~~~~~l~~~y~~~~~ 345 (363)
T PRK00555 289 ITTERIDLIADSAVRAGALGARMTGG-GFG---G-------------------CVIALVPADRAEDVADTVRRAAVTAGY 345 (363)
T ss_pred CCChhHHHHHHHHHhcCCeEEEECCC-Ccc---C-------------------eEEEEEchhHHHHHHHHHHHHHHHccC
Confidence 46789999999888899999877533 322 2 234567788899999999888765445
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
++-.+|++.-
T Consensus 346 ~~~~~~~~~~ 355 (363)
T PRK00555 346 PEPAVSRTYA 355 (363)
T ss_pred CCCcEEEEec
Confidence 5567777653
No 36
>PLN02417 dihydrodipicolinate synthase
Probab=41.89 E-value=25 Score=31.81 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.+.+.|+.|+.+.-..|-+......|+.+-.+...+....++.|.+-|.....+++++..+.+...|.
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Ga-- 97 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGM-- 97 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCC--
Confidence 455677888889999999999987777776665445444444333222356888999999999999999988877653
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 98 dav~~~~P~ 106 (280)
T PLN02417 98 HAALHINPY 106 (280)
T ss_pred CEEEEcCCc
Confidence 567776664
No 37
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=41.41 E-value=24 Score=32.11 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.. ..++.++.++.+...|-
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Ga-- 95 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGA-- 95 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCC--
Confidence 566778889999999999999987777776654434322222222212245666776766 88999999888887764
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 96 d~v~~~pP~ 104 (289)
T cd00951 96 DGILLLPPY 104 (289)
T ss_pred CEEEECCCC
Confidence 667766665
No 38
>PTZ00299 homoserine kinase; Provisional
Probab=40.26 E-value=90 Score=29.60 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcC---ccHHHHHHHHHHHhccCCCC
Q 026531 123 RVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSK---DQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 123 KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~D---e~VE~VVEaI~eaa~TGe~G 199 (237)
.++++++++.+.|..|.++| |.|..- +. +.++-...+...+ +..+++.+++.++... .--
T Consensus 243 ~~~~v~~~~~~~Ga~g~~lS---GSGPTv----------~a---l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~ 305 (336)
T PTZ00299 243 HFRPCVKAAREAGAHYAFLS---GAGPSV----------CA---LVGGRHGDPLTQPREERKAESVAEAMIKAAEA-VGV 305 (336)
T ss_pred cHHHHHHHHHHCCCeEEEEE---chhhhh----------eE---EeccccccccccccchhHHHHHHHHHHHHHHH-cCC
Confidence 36999999999999999887 444221 00 0111111111222 2366787777776642 223
Q ss_pred CeEEEEEecCc-EEEcc
Q 026531 200 DGKIFLVPVSD-VIRVR 215 (237)
Q Consensus 200 DGKIFVspVed-aVRIR 215 (237)
+++++++++++ -.+++
T Consensus 306 ~~~~~~~~~~~~G~~~~ 322 (336)
T PTZ00299 306 AGRVIITQPSDQGVHLV 322 (336)
T ss_pred ceEEEEccCCCCCcEEE
Confidence 68999999986 66665
No 39
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=39.95 E-value=30 Score=31.18 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+.+-.+...+....++.|..-|.....++.++..+.+...| =
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G--a 94 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVG--A 94 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcC--C
Confidence 55667788888899999999987666766555444433333322222234677888888889999999998887765 3
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|.
T Consensus 95 d~v~v~pP~ 103 (285)
T TIGR00674 95 DGFLVVTPY 103 (285)
T ss_pred CEEEEcCCc
Confidence 667777665
No 40
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=37.63 E-value=30 Score=31.75 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+.+-.+...+....++.|..-|.. ..++.++.++.+...|-
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Ga-- 102 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGA-- 102 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCC--
Confidence 556677889999999999999887777666654444333333222212345667777775 88999999988877654
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|.
T Consensus 103 dav~~~pP~ 111 (303)
T PRK03620 103 DGILLLPPY 111 (303)
T ss_pred CEEEECCCC
Confidence 566666663
No 41
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=36.82 E-value=69 Score=25.86 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=32.5
Q ss_pred ceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 137 RGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 137 ~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.|+|+.++.|.++-... |.-. ....|+.+.+.-++...+.-+++|+++=+.
T Consensus 36 dGlTv~Da~GqW~~~~~-----g~~~---rE~Skvv~i~~~~~~~~~~~i~~Ir~~Yk~ 86 (104)
T PF12098_consen 36 DGLTVLDAYGQWRDRAT-----GRLI---RERSKVVIIVHPDTPAAEARIEAIREAYKQ 86 (104)
T ss_pred CCceEEeccceEecCCC-----CcEe---ecccEEEEEEeCCChHHHHHHHHHHHHHHH
Confidence 58999999999987321 2211 124455444444466678888888877654
No 42
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=36.66 E-value=50 Score=29.87 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=61.1
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+..-.+... +...+ |...|.....++.++.++.+...|.
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~-~~~~~--vi~gvg~~~~~~ai~~a~~a~~~Ga- 92 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYS-DITDK--VIFQVGSLNLEESIELARAAKSFGI- 92 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHH-HHcCC--EEEEeCcCCHHHHHHHHHHHHHcCC-
Confidence 4677888999999999999999987777776654444332222222 12333 6778888889999999988887754
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|.
T Consensus 93 -d~v~v~~P~ 101 (279)
T cd00953 93 -YAIASLPPY 101 (279)
T ss_pred -CEEEEeCCc
Confidence 678877776
No 43
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=36.17 E-value=74 Score=21.09 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=25.5
Q ss_pred ccceeEEEEEEEcCccHHHHHHHHHHHhc
Q 026531 166 KFVAKVKMEIVVSKDQVEGVIDKIMEEAR 194 (237)
Q Consensus 166 ~~vpKvkIEIVV~De~VE~VVEaI~eaa~ 194 (237)
+|..++.+.+.|+.++++...+.|.+..+
T Consensus 26 ~y~~~V~~~v~v~~~~~~~f~~~l~~~t~ 54 (56)
T PF09186_consen 26 DYTDDVTLTVAVPEEEVEEFKAQLTDLTS 54 (56)
T ss_dssp EECTTEEEEEEEECCCHHHHHHHHHHHTT
T ss_pred eecceEEEEEEECHHHHHHHHHHHHHHcC
Confidence 36667999999999999999999988765
No 44
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=33.75 E-value=62 Score=33.60 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=61.4
Q ss_pred EEEEECC-CCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccc---------------cCccceecccceeEEEEEEEc
Q 026531 115 ISGRIRP-WRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERH---------------GGSEFSEDKFVAKVKMEIVVS 178 (237)
Q Consensus 115 IeAIIRp-~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~y---------------rG~e~~vd~~vpKvkIEIVV~ 178 (237)
|.++|.. .-.|.+-+.|.++|+...|+...+|.-.....-+.| ||.++ | -|..|++
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDI------p--nVSlVin 591 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDI------P--NVSLVIN 591 (673)
T ss_pred EEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCC------C--ccceeee
Confidence 5556644 456778899999999999987666554321111112 23222 1 3678999
Q ss_pred CccHHHHHHHHHHHhccC---CCCCeEEEEEecCcE
Q 026531 179 KDQVEGVIDKIMEEARTG---EIGDGKIFLVPVSDV 211 (237)
Q Consensus 179 De~VE~VVEaI~eaa~TG---e~GDGKIFVspVeda 211 (237)
-+.+..+.+-++++++|| +.|-.+-|+++=+.+
T Consensus 592 ydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 592 YDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred cchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 999999999999999995 566677888876644
No 45
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=33.55 E-value=30 Score=30.94 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=61.5
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+.+-.+...+....++.|.+-|.....++.++.++.+...|-
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~- 96 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGA- 96 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCC-
Confidence 4677788889999999999999986666666554444333333322222346778888888899999999988877643
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|.
T Consensus 97 -d~v~~~~P~ 105 (284)
T cd00950 97 -DAALVVTPY 105 (284)
T ss_pred -CEEEEcccc
Confidence 566666664
No 46
>PRK03926 mevalonate kinase; Provisional
Probab=33.54 E-value=1.9e+02 Score=25.96 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
....++++++.+++.|..|..++ |.|.. | .+..+++++..+++.+.+.+.
T Consensus 233 ~~p~l~~l~~~~~~~ga~ga~lS---GaG~G-g-------------------~v~~l~~~~~~~~~~~~~~~~------- 282 (302)
T PRK03926 233 STKELSELIYAARTAGALGAKIT---GAGGG-G-------------------CMVALAAPEKQSEVATAIKIA------- 282 (302)
T ss_pred CCHHHHHHHHHHHhCCCceeeec---cCCCC-C-------------------EEEEEeccccHHHHHHHHHhc-------
Confidence 56778899999999998776654 44431 2 234556677788887777653
Q ss_pred CeEEEEEecC-cEEEcc
Q 026531 200 DGKIFLVPVS-DVIRVR 215 (237)
Q Consensus 200 DGKIFVspVe-daVRIR 215 (237)
.+.+|++.++ +-++|.
T Consensus 283 ~~~~~~~~~~~~G~~i~ 299 (302)
T PRK03926 283 GGKPIITKITDEGLRIE 299 (302)
T ss_pred CCeEEEEecCCCeeEEE
Confidence 2688999885 455553
No 47
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=33.14 E-value=46 Score=30.34 Aligned_cols=87 Identities=11% Similarity=0.089 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHhCC-CceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 120 RPWRVQQVSSALLNMG-IRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~G-V~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
..+.+.+..+.+.+.| +.|+.+.-..|-+......|+-.-.+...+....++.|.+-|.....+++++..+.+...|-
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Ga- 97 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY- 97 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCC-
Confidence 5667778888899999 99999987777776654434322222222222346777888888889999999988877753
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|-
T Consensus 98 -d~v~v~~P~ 106 (290)
T TIGR00683 98 -DCLSAVTPF 106 (290)
T ss_pred -CEEEEeCCc
Confidence 567776664
No 48
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.06 E-value=1.7e+02 Score=20.38 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHh
Q 026531 121 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEA 193 (237)
Q Consensus 121 p~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa 193 (237)
+.-+.++.++|.+.|++-..++.. . ....|.++|++++.+++++++.+..
T Consensus 14 ~~~~~~i~~aL~~~~I~v~~i~~g----~-------------------s~~sis~~v~~~~~~~av~~Lh~~f 63 (65)
T cd04918 14 SLILERAFHVLYTKGVNVQMISQG----A-------------------SKVNISLIVNDSEAEGCVQALHKSF 63 (65)
T ss_pred ccHHHHHHHHHHHCCCCEEEEEec----C-------------------ccceEEEEEeHHHHHHHHHHHHHHH
Confidence 445667888888888876655421 1 1247889999999999999998753
No 49
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=32.93 E-value=35 Score=31.49 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=62.7
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+..-.++.|.+-|.....++.++.++.+...|-
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Ga- 104 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGA- 104 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCC-
Confidence 3667788999999999999999987777776654434322222222223346888899999999999999988877643
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|-
T Consensus 105 -d~vlv~~P~ 113 (309)
T cd00952 105 -DGTMLGRPM 113 (309)
T ss_pred -CEEEECCCc
Confidence 667777663
No 50
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=32.56 E-value=1.3e+02 Score=21.25 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEE-cCccHHHHHHHHHHHh
Q 026531 121 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVV-SKDQVEGVIDKIMEEA 193 (237)
Q Consensus 121 p~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV-~De~VE~VVEaI~eaa 193 (237)
...++++++++++.|+.|..++. .| .|. .|..++ +++.++++.+.+.+..
T Consensus 33 ~~~i~~~~~~~~~~Ga~~~~~sG---sG--~G~------------------~v~~l~~~~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 33 TPEIDELKEAAEENGALGAKMSG---SG--GGP------------------TVFALCKDEDDAERVAEALREHY 83 (85)
T ss_dssp HHHHHHHHHHHHHTTESEEEEET---TS--SSS------------------EEEEEESSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCceecCC---CC--CCC------------------eEEEEECCHHHHHHHHHHHHHhC
Confidence 55788999999999977766652 22 121 456677 6778899999987653
No 51
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=31.19 E-value=2.8e+02 Score=22.30 Aligned_cols=63 Identities=27% Similarity=0.412 Sum_probs=47.2
Q ss_pred EEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccC
Q 026531 117 GRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTG 196 (237)
Q Consensus 117 AIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TG 196 (237)
.-.+|+++++|+.+|.++- |. +|-+.+.+ | ||-+|++.++-+.+.+.|...-.
T Consensus 13 v~~~pe~l~av~~~L~~ip--~~---EV~~~d~~-G-------------------KlVVVie~~~~~~l~~tie~i~n-- 65 (94)
T COG3062 13 VQAKPERLSAVKTALLAIP--GC---EVYGEDAE-G-------------------KLVVVIEAEDSETLLETIESIRN-- 65 (94)
T ss_pred eecCHHHHHHHHHHHhcCC--Cc---EeeccCCC-c-------------------eEEEEEEcCchHHHHHHHHHHhc--
Confidence 3348999999999999873 22 34444444 3 78899999999999999977755
Q ss_pred CCCCeEEEEEec
Q 026531 197 EIGDGKIFLVPV 208 (237)
Q Consensus 197 e~GDGKIFVspV 208 (237)
=||.|-++=|
T Consensus 66 --l~gVlav~lV 75 (94)
T COG3062 66 --LPGVLAVSLV 75 (94)
T ss_pred --CCceeEEEEE
Confidence 4678777665
No 52
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=29.50 E-value=85 Score=22.28 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=28.9
Q ss_pred hcccce---eEEEEEECCCCHHHHHHHHHhCCCceEEEE
Q 026531 107 YFFFHL---LLISGRIRPWRVQQVSSALLNMGIRGVTVS 142 (237)
Q Consensus 107 ~~~~~M---KlIeAIIRp~KLdeV~eAL~e~GV~GmTVs 142 (237)
||..+- ..+.+.|+|.++..+.+.|++.|+..-.++
T Consensus 25 fW~~~~~~~~~~dv~V~p~~~~~f~~~L~~~~i~~~v~i 63 (74)
T PF02244_consen 25 FWKEPSSVGRPVDVMVPPEKLEEFEELLKEHGIEYEVLI 63 (74)
T ss_dssp EEESSSSTTSEEEEEEEGGGHHHHHHHHHHTT-EEEEEE
T ss_pred eecCCCCCCCeEEEEECHHHHHHHHHHHHHCCCcEEEEe
Confidence 555444 789999999999999999999999875544
No 53
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=29.41 E-value=41 Score=30.72 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.+.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|..-|.....++.++.++.+...|-
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Ga-- 96 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGA-- 96 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCC--
Confidence 556677888899999999999887777776654444322222222223346778888888999999999988877542
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|.
T Consensus 97 d~v~v~pP~ 105 (294)
T TIGR02313 97 DAAMVIVPY 105 (294)
T ss_pred CEEEEcCcc
Confidence 567766665
No 54
>PLN02451 homoserine kinase
Probab=29.16 E-value=2e+02 Score=27.53 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEc-CccHHHHHHHHHHHhccCCCCC
Q 026531 122 WRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS-KDQVEGVIDKIMEEARTGEIGD 200 (237)
Q Consensus 122 ~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~-De~VE~VVEaI~eaa~TGe~GD 200 (237)
..++++++++.+.|..|..++ |.|.. +..+++ ++.++++.+++.+.......-+
T Consensus 295 P~l~~l~~~~~~~GA~ga~mS---GSGpt----------------------vfal~~~~~~a~~i~~~l~~~~~~~~~~~ 349 (370)
T PLN02451 295 PGMEAVKKAALEAGAYGCTIS---GAGPT----------------------AVAVIDDEEKGEEVGERMVEAFRKAGNLK 349 (370)
T ss_pred ccHHHHHHHHHHCCCeEEEEE---ccchh----------------------eEEEEcCHHHHHHHHHHHHHHHHHhcCCC
Confidence 457899999999999887764 44432 234454 3578888888877654322124
Q ss_pred eEEEEEecCc-EEEc
Q 026531 201 GKIFLVPVSD-VIRV 214 (237)
Q Consensus 201 GKIFVspVed-aVRI 214 (237)
+.++++.+++ -.++
T Consensus 350 ~~~~~~~~d~~Ga~v 364 (370)
T PLN02451 350 ATASVKKLDRVGARL 364 (370)
T ss_pred ceEEEeccCCCCeEE
Confidence 6899998885 4443
No 55
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=27.62 E-value=64 Score=23.99 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=24.6
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEE
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVS 142 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs 142 (237)
..-+-.=+.++.++++.+.+++.++.|+.|+
T Consensus 26 ~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT 56 (83)
T PF08501_consen 26 AVYIPFEVEPEDLEDFLDALRAPNFRGLNVT 56 (83)
T ss_dssp EEEEEEETSTTCHHHHHHHHHHTTESEEEE-
T ss_pred cEEEEeecCHHHHHHHHHHHhcCCCCeeeec
Confidence 3344444578999999999999999999997
No 56
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=27.55 E-value=1.3e+02 Score=30.13 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEEecCcEEEccc
Q 026531 182 VEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRT 216 (237)
Q Consensus 182 VE~VVEaI~eaa~TGe~GDGKIFVspVedaVRIRT 216 (237)
--.++++|..--..--+|||.=||....+++.||.
T Consensus 257 KSTLL~Ale~GVYnHipGDGRE~VVT~~~avkirA 291 (448)
T PF09818_consen 257 KSTLLEALERGVYNHIPGDGREFVVTDPDAVKIRA 291 (448)
T ss_pred HHHHHHHHHhcccCCCCCCCceEEEECCCceEEEe
Confidence 34567777766666679999999999999999997
No 57
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=26.96 E-value=3.4e+02 Score=25.39 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=51.5
Q ss_pred EEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccC
Q 026531 117 GRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTG 196 (237)
Q Consensus 117 AIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TG 196 (237)
++|-.++-+++.+++.+.==.|.|..+.+|- .. + -+|..+.+||+..+..++.+.|++.=.
T Consensus 208 ~~iis~~~~~i~~~i~~~~~~g~T~l~g~Gg--Yt-------~--------~~k~vl~~Vv~~~e~~~lk~iv~~iDp-- 268 (289)
T COG1284 208 VIIISKKEEEIAALILEELGRGVTYLDGEGG--YT-------G--------EEKKVLYVVVTRLELPKLKEIVKEIDP-- 268 (289)
T ss_pred EEEeCChHHHHHHHHHHHhCCceEEEeceec--CC-------C--------CceEEEEEEecHHHHHHHHHHHHHhCC--
Confidence 3445566667777777765678888776552 11 1 246799999999999999999987633
Q ss_pred CCCCeEEEEEecCcEEE
Q 026531 197 EIGDGKIFLVPVSDVIR 213 (237)
Q Consensus 197 e~GDGKIFVspVedaVR 213 (237)
|..+-|+++.++.+
T Consensus 269 ---~Afi~i~~~~~v~G 282 (289)
T COG1284 269 ---NAFISISDVREVLG 282 (289)
T ss_pred ---CcEEEEecchhccc
Confidence 35666777666543
No 58
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=26.53 E-value=78 Score=26.58 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=56.1
Q ss_pred ceeEEEEEECC---CCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHH
Q 026531 111 HLLLISGRIRP---WRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVID 187 (237)
Q Consensus 111 ~MKlIeAIIRp---~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVE 187 (237)
.|.++++-.+- +.+..|.++|.++|+.-+|..++.---+..|.. -.+...|..+|+..-.+.++.
T Consensus 9 ~~~~~~~~s~~~~~E~i~~l~~~lk~~G~~V~~~id~~e~l~~~g~~------------~~~p~~Il~~cnP~~g~~ll~ 76 (137)
T COG3439 9 AMMLVTAESKLSFDETIERLEEKLKKNGFKVFTEIDHAEALKNAGVL------------DIPPYTILVFCNPKAGTPLLS 76 (137)
T ss_pred cceeEEEEecCCHHHHHHHHHHHHHhCCCeEEEEecHHHHHHhcCcC------------CCCCeEEEEEcCCcccchhhc
Confidence 35555555543 445667788888999999999876555554411 256789999999999999877
Q ss_pred HHHHHhcc-------CCCCCeEEEEEe
Q 026531 188 KIMEEART-------GEIGDGKIFLVP 207 (237)
Q Consensus 188 aI~eaa~T-------Ge~GDGKIFVsp 207 (237)
.=.+.+-. -+.|||+++++=
T Consensus 77 ~~p~~gl~lPcrv~V~e~~~~~v~~~~ 103 (137)
T COG3439 77 KNPEFGLLLPCRVLVYEDEDGKVRVSY 103 (137)
T ss_pred cChhhhccCCeEEEEEEcCCCeEEEEE
Confidence 65544332 123666666553
No 59
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=26.42 E-value=56 Score=31.64 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=55.0
Q ss_pred CCCC--HHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceeccccee-EEEEEEEcCccHHHHHHHHHHHhc--
Q 026531 120 RPWR--VQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAK-VKMEIVVSKDQVEGVIDKIMEEAR-- 194 (237)
Q Consensus 120 Rp~K--LdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpK-vkIEIVV~De~VE~VVEaI~eaa~-- 194 (237)
.|-| +..+.+.+++..++||.-+...|+- .+.. ...|+ .+.+|--+...+.+|.+.|.+.++
T Consensus 223 ~PTrIYvk~vL~l~~~~~vkg~AHITGGG~~--eNl~-----------Rv~p~~l~a~id~~~~~~p~iF~~i~~~G~v~ 289 (345)
T COG0150 223 EPTRIYVKPVLALIKEGDVKGMAHITGGGFV--ENLP-----------RVLPEGLGAVIDKPSWPPPPIFKWLQKAGNVE 289 (345)
T ss_pred CCceeehHHHHHHHhcCCcceEEEecCCChh--hhCh-----------hhcCccceEEEcCCCCCCcHHHHHHHHhcCCC
Confidence 4444 4568888888889998765554444 2211 12332 556666666668999999998884
Q ss_pred ------cCCCCCeEEEEEecCcEEEc
Q 026531 195 ------TGEIGDGKIFLVPVSDVIRV 214 (237)
Q Consensus 195 ------TGe~GDGKIFVspVedaVRI 214 (237)
|=+.|=|.+++.|=+++-++
T Consensus 290 ~~EM~rtFNmGvG~v~iv~~e~~~~~ 315 (345)
T COG0150 290 REEMYRTFNMGVGMVLIVPEEDAEKA 315 (345)
T ss_pred HHHHHHHhcCccceEEEEcHHHHHHH
Confidence 34689999999987775444
No 60
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=26.17 E-value=71 Score=29.52 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.++.+-|.+.|+.|+-+.-..|-+......|..+-.+...+..-.|+.|..-+.....++.++..+.+...| =
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~G--a 100 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLG--A 100 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcC--C
Confidence 45556788899999999999998887877776555555444544432234677888899999999999999998887 4
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+-+.|-
T Consensus 101 d~il~v~Py 109 (299)
T COG0329 101 DGILVVPPY 109 (299)
T ss_pred CEEEEeCCC
Confidence 567777764
No 61
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=26.12 E-value=1.3e+02 Score=22.54 Aligned_cols=39 Identities=13% Similarity=-0.028 Sum_probs=33.9
Q ss_pred hhcccceeEEEEEECCCCHHHHHHHHHhCCCceEEEEee
Q 026531 106 MYFFFHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDV 144 (237)
Q Consensus 106 ~~~~~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~V 144 (237)
.|...+..++-|+.....-+.|+++.+++|++-=+|++|
T Consensus 39 s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~p~d~I~eV 77 (77)
T PF14026_consen 39 SYVSEDDGKIFCLYEAPDEEAVREHARRAGLPADRITEV 77 (77)
T ss_pred EEEecCCCeEEEEEECCCHHHHHHHHHHcCCCcceEEEC
Confidence 344567889999999999999999999999998888765
No 62
>PRK04194 hypothetical protein; Provisional
Probab=25.71 E-value=1.3e+02 Score=29.54 Aligned_cols=64 Identities=14% Similarity=0.215 Sum_probs=49.6
Q ss_pred eEEEEEE---CCCCHHHHHHHHHhCCCceEEEEeeeee-ccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHH
Q 026531 113 LLISGRI---RPWRVQQVSSALLNMGIRGVTVSDVRGF-GAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDK 188 (237)
Q Consensus 113 KlIeAII---Rp~KLdeV~eAL~e~GV~GmTVs~VrG~-Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEa 188 (237)
..+++=| .++-+..+.+.|.+.|+.-..++.+.+. ||+ -.+|.++|+.++.+++.+.
T Consensus 249 ~vlEtniDD~t~E~lg~~~e~L~~~GAlDV~~tPi~MKK~RP-------------------g~~L~vl~~~~~~~~l~~~ 309 (392)
T PRK04194 249 VVLETNIDDLSPEVLGYLFERLLEAGALDVFITPITMKKNRP-------------------GHLLTVICPPEKAEELARI 309 (392)
T ss_pred EEEEecCcCCCHHHHHHHHHHHHHCCCceeeeccceecCCCc-------------------eeEEEEEeCHHHHHHHHHH
Confidence 3455555 5677888999999999998888876543 222 2689999999999999999
Q ss_pred HHHHhcc
Q 026531 189 IMEEART 195 (237)
Q Consensus 189 I~eaa~T 195 (237)
|.+...|
T Consensus 310 if~eTtT 316 (392)
T PRK04194 310 LFRETGT 316 (392)
T ss_pred HHhcCCC
Confidence 9876555
No 63
>PRK05101 galactokinase; Provisional
Probab=25.65 E-value=2.3e+02 Score=26.92 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHhC-CCc-eEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCC
Q 026531 120 RPWRVQQVSSALLNM-GIR-GVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGE 197 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~-GV~-GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe 197 (237)
....+|.+.+..++. |+. |..+ .|-|.. | -+..+|+++.++++.+.+.+.=....
T Consensus 308 S~~eld~lv~~a~~~~Ga~gGakl---tGaG~G-G-------------------~~ial~~~~~~~~~~~~~~~~y~~~~ 364 (382)
T PRK05101 308 TVPQIDTLVEIVKAVIGDQGGVRM---TGGGFG-G-------------------CIVALVPEELVEAVRQAVAEQYEAKT 364 (382)
T ss_pred CCHhHHHHHHHHHhccCCcceEEe---ccCCCc-c-------------------EEEEEEcHHHHHHHHHHHHHHHHHhh
Confidence 566899999988887 875 4333 344433 2 23456889999999999876622111
Q ss_pred CCCeEEEEEecCcEEE
Q 026531 198 IGDGKIFLVPVSDVIR 213 (237)
Q Consensus 198 ~GDGKIFVspVedaVR 213 (237)
-.+-.+|++...+-.+
T Consensus 365 ~~~~~~~~~~~~~Ga~ 380 (382)
T PRK05101 365 GLKETFYVCKASQGAG 380 (382)
T ss_pred CCCCeEEEEecCCCcc
Confidence 2233677766555443
No 64
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=25.33 E-value=77 Score=28.65 Aligned_cols=87 Identities=17% Similarity=0.165 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHhC-CCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 120 RPWRVQQVSSALLNM-GIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~-GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
..+-+.+..+.|.+. |+.|+.+.-..|-+......|+-.-.+...+....++.|..-|.....+++++..+.+...|
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~G-- 96 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELG-- 96 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcC--
Confidence 556677888888888 99999998777777655433433233322221234677888888888999999988887765
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
=||.+.+.|.
T Consensus 97 ad~v~~~~P~ 106 (288)
T cd00954 97 YDAISAITPF 106 (288)
T ss_pred CCEEEEeCCC
Confidence 3567766665
No 65
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=25.32 E-value=64 Score=29.25 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHh-CCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 120 RPWRVQQVSSALLN-MGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 120 Rp~KLdeV~eAL~e-~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
..+.+.+..+.|.+ .|+.|+.+.-..|-+......|+-.-.+...+....++.|..-+.....+++++.++.+...|
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~G-- 99 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELG-- 99 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcC--
Confidence 55667788899999 999999988766666554433332222222222234677788888888999999998888776
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
=||.+.+.|.
T Consensus 100 ad~v~v~~P~ 109 (293)
T PRK04147 100 YDAISAVTPF 109 (293)
T ss_pred CCEEEEeCCc
Confidence 3567766665
No 66
>PRK08210 aspartate kinase I; Reviewed
Probab=24.78 E-value=2.5e+02 Score=26.66 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=52.0
Q ss_pred EEEEECCCCHHHHHHHHHhCCC-----ceEEEEeeeeeccCCCCcc---cc-----cCccceecccceeEEEEEEEcCcc
Q 026531 115 ISGRIRPWRVQQVSSALLNMGI-----RGVTVSDVRGFGAQGGSTE---RH-----GGSEFSEDKFVAKVKMEIVVSKDQ 181 (237)
Q Consensus 115 IeAIIRp~KLdeV~eAL~e~GV-----~GmTVs~VrG~Grq~G~~e---~y-----rG~e~~vd~~vpKvkIEIVV~De~ 181 (237)
+...+..+..+++.++|++.|. .++++..+-|.|-...... .+ .+....- -......+.+++++++
T Consensus 310 is~~v~~~~~~~a~~~l~~~~~~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~-~~~s~~~is~vv~~~~ 388 (403)
T PRK08210 310 VVFTVSDEDSEKAKEILENLGLKPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ-SADSHTTIWVLVKEED 388 (403)
T ss_pred EEEEEcHHHHHHHHHHHHHhCCcEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE-EecCCCEEEEEEcHHH
Confidence 4455667778889999999886 4666667888886532111 11 1111110 1125678999999999
Q ss_pred HHHHHHHHHHHh
Q 026531 182 VEGVIDKIMEEA 193 (237)
Q Consensus 182 VE~VVEaI~eaa 193 (237)
.+++++++.+..
T Consensus 389 ~~~a~~~Lh~~f 400 (403)
T PRK08210 389 MEKAVNALHDAF 400 (403)
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 67
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=24.50 E-value=2.4e+02 Score=19.40 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHh
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEA 193 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa 193 (237)
.|+-+.++-++|.+.|+.=..++ .....|.+++++++.+++++++.+..
T Consensus 14 ~~gi~~~if~aL~~~~I~v~~~~-------------------------~Se~~is~~v~~~~~~~av~~Lh~~f 62 (64)
T cd04937 14 VPGVMAKIVGALSKEGIEILQTA-------------------------DSHTTISCLVSEDDVKEAVNALHEAF 62 (64)
T ss_pred CcCHHHHHHHHHHHCCCCEEEEE-------------------------cCccEEEEEEcHHHHHHHHHHHHHHh
Confidence 35556777788877777653111 02357899999999999999998764
No 68
>TIGR00299 conserved hypothetical protein TIGR00299. Members of this family are found in the Archaea and in several different bacteria lineages. The function in unknown and the genomic context is not well conserved.
Probab=24.30 E-value=1.5e+02 Score=28.92 Aligned_cols=65 Identities=11% Similarity=0.190 Sum_probs=50.3
Q ss_pred eeEEEEEE---CCCCHHHHHHHHHhCCCceEEEEeeeee-ccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHH
Q 026531 112 LLLISGRI---RPWRVQQVSSALLNMGIRGVTVSDVRGF-GAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVID 187 (237)
Q Consensus 112 MKlIeAII---Rp~KLdeV~eAL~e~GV~GmTVs~VrG~-Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVE 187 (237)
+..+++=| .|+.+..+.+.|.++|+.-...+.+... ||+ -.+|.++|+.++.+.+.+
T Consensus 247 v~vlEtniDD~t~E~lg~~~e~L~~~GAlDV~~tPi~MKK~RP-------------------g~~L~vlc~~~~~~~l~~ 307 (382)
T TIGR00299 247 ITVLETNVDDISGEALGYLLESLLEQGALDVFTIPIYMKKNRP-------------------GILLRVICAPENQEEVLN 307 (382)
T ss_pred EEEEEecCcCCCHHHHHHHHHHHHHCCCceeeeccceeeCCCc-------------------eeEEEEEeCHHHHHHHHH
Confidence 44455555 5777888999999999988888776442 222 268999999999999999
Q ss_pred HHHHHhcc
Q 026531 188 KIMEEART 195 (237)
Q Consensus 188 aI~eaa~T 195 (237)
.|.+...|
T Consensus 308 ~if~eTtT 315 (382)
T TIGR00299 308 LLFRETGS 315 (382)
T ss_pred HHHHhCCC
Confidence 99887655
No 69
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=24.25 E-value=1e+02 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=14.2
Q ss_pred ccceeEEEEEEEcCccHHHHHHHHHHH
Q 026531 166 KFVAKVKMEIVVSKDQVEGVIDKIMEE 192 (237)
Q Consensus 166 ~~vpKvkIEIVV~De~VE~VVEaI~ea 192 (237)
.++|+..+++ ++++.+.+.+.|-+.
T Consensus 196 ~~~P~~~v~l--~~e~~~~~~~lie~L 220 (234)
T PF01709_consen 196 EYIPNNPVEL--SEEDAEKVEKLIEAL 220 (234)
T ss_dssp EEEESS-EE----HHHHHHHHHHHHHH
T ss_pred EEeCCCCccc--CHHHHHHHHHHHHHH
Confidence 4678888777 666666666655443
No 70
>PTZ00298 mevalonate kinase; Provisional
Probab=24.21 E-value=3e+02 Score=25.38 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEc-CccHHHHHHHHHHHhccCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVS-KDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~-De~VE~VVEaI~eaa~TGe~ 198 (237)
....++++++++++.|+.|..++ |.|.. | -+..+++ ++.++++.+.+.+...
T Consensus 259 ~~p~l~~l~~~~~~~Ga~gaklS---GsG~G-G-------------------~v~al~~~~~~a~~~~~~l~~~~~---- 311 (328)
T PTZ00298 259 SCRELDSIVQTCRTYGALGAKMS---GTGRG-G-------------------LVVALAASEDQRDAIAKAVRARCP---- 311 (328)
T ss_pred CcHHHHHHHHHHHhCCCceeEec---cCCCC-e-------------------EEEEEecchhhHHHHHHHHHHHhh----
Confidence 67789999999999998887653 55543 2 2233444 4678888888877643
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
+-|..|+.++
T Consensus 312 ~~~~~w~~~~ 321 (328)
T PTZ00298 312 EAKFVWRYTV 321 (328)
T ss_pred hcCCeEEEEe
Confidence 3467788777
No 71
>COG1931 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.04 E-value=1.6e+02 Score=25.22 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=47.3
Q ss_pred EEEEEEC-CCCHHHHHHHHHhCCCceEEEE--ee-----eeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHH
Q 026531 114 LISGRIR-PWRVQQVSSALLNMGIRGVTVS--DV-----RGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGV 185 (237)
Q Consensus 114 lIeAIIR-p~KLdeV~eAL~e~GV~GmTVs--~V-----rG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~V 185 (237)
+++|.|+ .+.-++|.+|.... |+++++. +- .|.|+.......++..- .-+.|
T Consensus 4 ~v~a~V~PTED~~KV~kAi~Nl-Fp~~~ie~~~~~~~~~~~~~~~~~sL~~l~elL-------------------r~qrI 63 (140)
T COG1931 4 EVEAEVYPTEDPEKVLKAILNL-FPGAEIEVEDEDYEILVGEGRTLKSLERLRELL-------------------RKQRI 63 (140)
T ss_pred EEEEEeccCCCHHHHHHHHHhc-CCchheEeeccceeeeeeccchHHHHHHHHHHH-------------------HHhHH
Confidence 5778885 57888999999988 6665554 21 22222211111111111 23678
Q ss_pred HHHHHHHhccCCCCCeEEEEEe
Q 026531 186 IDKIMEEARTGEIGDGKIFLVP 207 (237)
Q Consensus 186 VEaI~eaa~TGe~GDGKIFVsp 207 (237)
+++.+.....|..|++..|-..
T Consensus 64 lDtAR~~l~kG~~~~~v~f~ln 85 (140)
T COG1931 64 LDTARMVLEKGLTGNEVTFYLN 85 (140)
T ss_pred HHHHHHHHHccccCCeEEEEEe
Confidence 8999999999999998888765
No 72
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=23.56 E-value=1.6e+02 Score=26.66 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=30.5
Q ss_pred eEEEEEEEcCccHHHHHHHHHHHhccCCCCCeEEEEEecCcE
Q 026531 170 KVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVSDV 211 (237)
Q Consensus 170 KvkIEIVV~De~VE~VVEaI~eaa~TGe~GDGKIFVspVeda 211 (237)
-+-|..+|+++.+-++++.+++++-. -|.|+|++.+
T Consensus 250 ~~av~~~~~~~~~~~~~~~l~~~ga~------~i~~~~i~~~ 285 (287)
T PRK00489 250 WVAVHAVVPEDLVWELMDKLKALGAR------GILVLPIEKM 285 (287)
T ss_pred eEEEEEEECHHHHHHHHHHHHHcCCC------eEEEechHHh
Confidence 47899999999999999999988554 5889998864
No 73
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=22.61 E-value=89 Score=24.87 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCceEEEEee
Q 026531 125 QQVSSALLNMGIRGVTVSDV 144 (237)
Q Consensus 125 deV~eAL~e~GV~GmTVs~V 144 (237)
.+|.++|+++|+..++|+--
T Consensus 25 PEv~~~L~~~Gi~~ysIfl~ 44 (102)
T TIGR02625 25 PELKEVLKSHGAHNYSIFLD 44 (102)
T ss_pred HHHHHHHHHCCCeEEEEEEE
Confidence 57999999999999999854
No 74
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=22.17 E-value=65 Score=27.63 Aligned_cols=28 Identities=36% Similarity=0.652 Sum_probs=22.8
Q ss_pred EEEcCccHHHHHHHHHHHhccCCCCCeEEEEEecC
Q 026531 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVS 209 (237)
Q Consensus 175 IVV~De~VE~VVEaI~eaa~TGe~GDGKIFVspVe 209 (237)
-..+|+..+++.+.|.++ ||+||-+||-
T Consensus 59 c~~~dD~~~~i~~~l~~a-------D~iI~gsPvy 86 (207)
T COG0655 59 CVIKDDDMNEIYEKLLEA-------DGIIFGSPVY 86 (207)
T ss_pred CCCCcccHHHHHHHHHHC-------CEEEEeCCee
Confidence 556677799999999776 8999999973
No 75
>PF01969 DUF111: Protein of unknown function DUF111; InterPro: IPR002822 The proteins in this family have no known function.; PDB: 3C19_A.
Probab=22.13 E-value=2.6e+02 Score=27.29 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=53.2
Q ss_pred cceeEEEEEE---CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHH
Q 026531 110 FHLLLISGRI---RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVI 186 (237)
Q Consensus 110 ~~MKlIeAII---Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VV 186 (237)
-.+-.|++=| .|+.+..+.+.|.+.|+.-..++.+.+. . | -|-.+|.++|+.++.+.+.
T Consensus 248 d~v~vlEtniDD~s~E~lg~~~e~L~~~GAlDV~~~Pi~MK--K-~---------------RPg~~l~Vl~~~~~~~~l~ 309 (382)
T PF01969_consen 248 DEVVVLETNIDDMSPEELGYLIERLLEAGALDVFFTPIQMK--K-N---------------RPGYLLTVLCRPEDAEALA 309 (382)
T ss_dssp --EEEEEEEEETTSTTHHHHHHHHHTTSTEEEEEEEEEEET--T-T---------------EEEEEEEEEEHHHHHHHHH
T ss_pred CeEEEEEeeccCCCHHHHHHHHHHHHHcCCceeEEccceEE--c-C---------------ceeEEEEEEeCHHHHHHHH
Confidence 4577888888 7899999999999999988888876442 2 2 1236899999999999999
Q ss_pred HHHHHHhcc
Q 026531 187 DKIMEEART 195 (237)
Q Consensus 187 EaI~eaa~T 195 (237)
+.|.+...|
T Consensus 310 ~~if~eTtT 318 (382)
T PF01969_consen 310 ELIFRETTT 318 (382)
T ss_dssp HHHHHHH--
T ss_pred HHHHHhCCC
Confidence 999988776
No 76
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.94 E-value=85 Score=28.56 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.++.+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-|.. ..++.++..+.+...|-
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Ga-- 100 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGA-- 100 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCC--
Confidence 455677888999999999999876666665544333222222211112235566666664 58888888877766644
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
|+.+.+.|-
T Consensus 101 dav~~~pP~ 109 (296)
T TIGR03249 101 DGYLLLPPY 109 (296)
T ss_pred CEEEECCCC
Confidence 567666664
No 77
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=21.82 E-value=3.3e+02 Score=24.72 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCCCe
Q 026531 122 WRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDG 201 (237)
Q Consensus 122 ~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~GDG 201 (237)
..++++++++++.|..|..++ |.| + .+..++++++..+.+..+.+... ....++
T Consensus 234 p~l~~i~~~~~~~Ga~g~~lS---GsG-p---------------------tv~al~~~~~~~~~~~~~~~~~~-~~~~~~ 287 (302)
T TIGR00191 234 PNLFKIKQAALEKGAYGITIS---GSG-P---------------------TILAMADEEFAEQKEQDLLEVLH-KQGIEG 287 (302)
T ss_pred CCHHHHHHHHHHCCCeEEEEE---chh-h---------------------hheEEecchhhHHHHHHHHHHHH-hcCCCe
Confidence 467999999999999887765 444 1 13345665554444444443333 233478
Q ss_pred EEEEEecCc
Q 026531 202 KIFLVPVSD 210 (237)
Q Consensus 202 KIFVspVed 210 (237)
.+++..+++
T Consensus 288 ~~~~~~~~~ 296 (302)
T TIGR00191 288 TVHVLDFDN 296 (302)
T ss_pred EEEEcccCC
Confidence 999998874
No 78
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=21.75 E-value=4.5e+02 Score=24.94 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=30.7
Q ss_pred ceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 026531 111 HLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVR 145 (237)
Q Consensus 111 ~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~Vr 145 (237)
.-..+..++..+..+.+.++|.+.|+.|.++.+..
T Consensus 3 ~w~el~i~~~~~~aE~~~~~l~e~G~~~v~~eD~~ 37 (300)
T COG2264 3 PWIELSLITTGEAAERVSDALEEAGAVGVAIEDAK 37 (300)
T ss_pred ceEEEEEEeCHHHHHHHHHHHHhcCcceeeeeccc
Confidence 34567778889999999999999999999999886
No 79
>PRK09739 hypothetical protein; Provisional
Probab=21.51 E-value=3.2e+02 Score=23.09 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=19.8
Q ss_pred eeEEEEEE-CCCC-------HHHHHHHHHhCCCceEEEEeeee
Q 026531 112 LLLISGRI-RPWR-------VQQVSSALLNMGIRGVTVSDVRG 146 (237)
Q Consensus 112 MKlIeAII-Rp~K-------LdeV~eAL~e~GV~GmTVs~VrG 146 (237)
|++|.+|. +|.. ++.+.++|++.| .-.++.+...
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g-~~v~~~dL~~ 44 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERG-HQVEELDLYR 44 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCC-CEEEEEEhhh
Confidence 55566665 4433 556677777777 3555565543
No 80
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=21.49 E-value=5.4e+02 Score=22.28 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=48.0
Q ss_pred eEEEEEE-CCCCHHHHHHHHHhC-CCce---EEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcC-ccHHHHH
Q 026531 113 LLISGRI-RPWRVQQVSSALLNM-GIRG---VTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSK-DQVEGVI 186 (237)
Q Consensus 113 KlIeAII-Rp~KLdeV~eAL~e~-GV~G---mTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~D-e~VE~VV 186 (237)
-.+.+|| -.+.-+.|.+||... +-.+ ..+....| + .|..+ ..++.-+.+ ...++++
T Consensus 10 i~~rv~iHaTED~~kV~eAL~~~~p~~~~~e~ev~~aeG--h--------yGNpI--------~il~~~l~~~~~~~~fl 71 (149)
T COG1325 10 IEIRVIIHATEDEEKVLEALENFFPEAIDVEIEVTEAEG--H--------YGNPI--------TILEVRLERSREARKFL 71 (149)
T ss_pred EEEEEEEEccCCHHHHHHHHHHhcCcccccceEEEEeec--c--------cCCeE--------EEEEEEecCcHHHHHHH
Confidence 4577888 678999999999997 2222 33444433 2 23333 356666666 6688888
Q ss_pred HHHHHHhcc------------CCCCCeEEEE
Q 026531 187 DKIMEEART------------GEIGDGKIFL 205 (237)
Q Consensus 187 EaI~eaa~T------------Ge~GDGKIFV 205 (237)
+.|++...+ .-.|+|+.|+
T Consensus 72 k~i~e~l~~ed~~~l~~~le~rvD~~g~lyl 102 (149)
T COG1325 72 KKLRELLGEEDREYLLETLEERVDENGVLYL 102 (149)
T ss_pred HHHHHhcChHHHHHHHHhhHhccCCCceEEE
Confidence 888877773 2357766664
No 81
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=21.25 E-value=1.7e+02 Score=22.98 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=32.5
Q ss_pred chhcccceeEEEEEECCCCHHHHHHHHHhCCCc-eEEEEeeee
Q 026531 105 SMYFFFHLLLISGRIRPWRVQQVSSALLNMGIR-GVTVSDVRG 146 (237)
Q Consensus 105 ~~~~~~~MKlIeAIIRp~KLdeV~eAL~e~GV~-GmTVs~VrG 146 (237)
++++...+-.+...+.+++.+++.+++++.|++ ...|=.|..
T Consensus 102 ~~l~~~~~g~~l~~v~~~~~~~~~~~~~~~g~~~~~~IG~V~~ 144 (153)
T PF02769_consen 102 EMLFSESEGRLLVAVPPEDAEEFLAALKKAGIPNATVIGEVTE 144 (153)
T ss_dssp HHHHHSSSTEEEEEEEGGGHHHHHHHHHHTTCTTEEEEEEEES
T ss_pred hhhccCCCCCEEEEEcHHHHHHHHHHHHhCCCCCEEEEEEEEc
Confidence 456667788888888999999999999999995 444435543
No 82
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=21.06 E-value=2.6e+02 Score=26.39 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=42.3
Q ss_pred CCCCHHHHH-HHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 120 RPWRVQQVS-SALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 120 Rp~KLdeV~-eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
....+|.+. .++.+.|+-|..++- -|.. | -+..+|+++.++++.+.+.+.-.-..-
T Consensus 313 s~peld~lv~~a~~~~GAlGakltG---aG~G-G-------------------~vial~~~~~~~~v~~~~~~~y~~~~~ 369 (386)
T TIGR00131 313 TCPEIDELVCSAALVNGSGGSRMTG---AGFG-G-------------------CTVHLVPNENVDKVRQAVADKYPKKTG 369 (386)
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEec---CCCc-e-------------------EEEEEEcHHHHHHHHHHHHHHHHHhhC
Confidence 345788555 556778999988863 3322 2 234567788899999999777522111
Q ss_pred CCeEEEEEecCc
Q 026531 199 GDGKIFLVPVSD 210 (237)
Q Consensus 199 GDGKIFVspVed 210 (237)
.+...|++.+.+
T Consensus 370 ~~~~~~~~~~~~ 381 (386)
T TIGR00131 370 LELTFYVIVSKP 381 (386)
T ss_pred CCCcEEEEEECC
Confidence 244566665554
No 83
>PTZ00290 galactokinase; Provisional
Probab=20.96 E-value=2.9e+02 Score=27.55 Aligned_cols=67 Identities=19% Similarity=0.394 Sum_probs=44.8
Q ss_pred CCCCHHHHHHH-HHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 120 RPWRVQQVSSA-LLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 120 Rp~KLdeV~eA-L~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
....+|.+.++ +...|+.|..++-. |+| | -+...|+++.++++++.+.+.-. .+.
T Consensus 383 S~~elD~lv~~~~~~~G~~GaRlTGa-G~G---G-------------------c~i~Lv~~~~~~~~~~~v~~~y~-~~~ 438 (468)
T PTZ00290 383 TTPELDFIHELINEEKGVAGGRMMGG-GFG---G-------------------CIILLLKKNAVDRVVAHVREKFK-ARF 438 (468)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEecC-CCc---e-------------------EEEEEechhhHHHHHHHHHHHHH-Hhh
Confidence 67789999996 46679999877533 333 2 23456888999999999988753 333
Q ss_pred C-CeEEEEEecCc
Q 026531 199 G-DGKIFLVPVSD 210 (237)
Q Consensus 199 G-DGKIFVspVed 210 (237)
| +-.+|++...+
T Consensus 439 g~~~~~~~~~~~~ 451 (468)
T PTZ00290 439 GVENDVYPVVAGD 451 (468)
T ss_pred CCCCcEEEEecCC
Confidence 3 34566555443
No 84
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.93 E-value=3e+02 Score=19.16 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeee
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVR 145 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~Vr 145 (237)
+|+.+.++.+.+.+.|+.=.++...+
T Consensus 9 ~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 9 KPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred CCccHHHHHHHHHHCCCeEEEEEecc
Confidence 89999999999999999888776443
No 85
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.86 E-value=2.8e+02 Score=19.12 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=25.3
Q ss_pred eeEEEEEE--CCCCHHHHHHHHHhCCCceEEEE
Q 026531 112 LLLISGRI--RPWRVQQVSSALLNMGIRGVTVS 142 (237)
Q Consensus 112 MKlIeAII--Rp~KLdeV~eAL~e~GV~GmTVs 142 (237)
||.|...+ +|+-+.++.+.|.+.|+.=.++.
T Consensus 1 ~~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~ 33 (66)
T cd04908 1 IKQLSVFLENKPGRLAAVTEILSEAGINIRALS 33 (66)
T ss_pred CEEEEEEEcCCCChHHHHHHHHHHCCCCEEEEE
Confidence 57788877 78999999999999998655553
No 86
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=20.46 E-value=2.3e+02 Score=22.39 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=25.3
Q ss_pred EEcCccHHHHHHHHHHHhccCCCCCeEEEEEecC
Q 026531 176 VVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPVS 209 (237)
Q Consensus 176 VV~De~VE~VVEaI~eaa~TGe~GDGKIFVspVe 209 (237)
+-+++..+++.+.+.+....-+.|||.|+.+|+.
T Consensus 35 ~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~ 68 (116)
T TIGR00824 35 FVPGENAETLQEKYNAALADLDTEEEVLFLVDIF 68 (116)
T ss_pred cCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 4455667777777777777666789999999874
No 87
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=20.06 E-value=2e+02 Score=24.24 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcC
Q 026531 121 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSK 179 (237)
Q Consensus 121 p~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~D 179 (237)
..|.+.|++.|.+.|+..- -..+.|+|...-.... -+.+.....-++||.+..
T Consensus 137 ~rRA~aV~~~L~~~Gv~~~-~i~~~G~G~~~Pia~n-----~t~~gra~NRRVei~i~~ 189 (190)
T COG2885 137 ERRAEAVADYLVSQGVVAD-RISTVGYGEEKPIASN-----ATEEGRAKNRRVEIKISP 189 (190)
T ss_pred HHHHHHHHHHHHHcCCCcc-cEEEEEcCcCCCCCCC-----CChhHhcccceEEEEecC
Confidence 3578999999999996655 6688899987542210 011124556778877653
No 88
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=20.03 E-value=72 Score=24.47 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=22.5
Q ss_pred cceeEEEEEECCCCHHHHHHHHHhC
Q 026531 110 FHLLLISGRIRPWRVQQVSSALLNM 134 (237)
Q Consensus 110 ~~MKlIeAIIRp~KLdeV~eAL~e~ 134 (237)
.+..+|+.+++.++++++.+++.+.
T Consensus 53 ~~k~~i~ivv~d~~v~~iv~~I~~~ 77 (102)
T PF00543_consen 53 SPKVKIEIVVPDEDVEEIVEAISEA 77 (102)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred cccEEEEEEECHHhHHHHHHHHHHh
Confidence 3678899999999999999999886
Done!