Query 026531
Match_columns 237
No_of_seqs 138 out of 1148
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o66_A PII protein; regulation 100.0 3.8E-40 1.3E-44 269.6 12.7 129 104-235 5-133 (135)
2 3ncq_A Nitrogen regulatory pro 100.0 1.9E-39 6.5E-44 260.5 15.2 114 112-226 1-114 (119)
3 4aff_A Nitrogen regulatory pro 100.0 9.4E-40 3.2E-44 260.8 12.9 112 112-224 1-112 (116)
4 3mhy_A PII-like protein PZ; PI 100.0 1.8E-39 6.2E-44 256.8 13.2 112 112-224 1-112 (112)
5 3l7p_A Putative nitrogen regul 100.0 1.7E-39 5.7E-44 259.0 11.0 113 111-224 2-115 (115)
6 3t9z_A GLNK3, nitrogen regulat 100.0 7.7E-39 2.6E-43 256.6 12.2 112 112-224 1-112 (118)
7 1hwu_A PII protein; herbaspiri 100.0 1E-36 3.5E-41 239.0 12.6 112 112-224 1-112 (112)
8 2j9c_A GLNK1, hypothetical nit 100.0 3.2E-36 1.1E-40 239.6 14.6 115 112-227 3-117 (119)
9 2ns1_B Nitrogen regulatory pro 100.0 1.9E-36 6.5E-41 239.7 12.5 113 111-224 4-116 (116)
10 1vfj_A Nitrogen regulatory pro 100.0 3.4E-36 1.2E-40 237.6 13.2 114 112-226 1-114 (116)
11 3bzq_A Nitrogen regulatory pro 100.0 2E-36 6.8E-41 238.0 11.7 113 111-224 2-114 (114)
12 2eg2_A Nitrogen regulatory pro 100.0 2.4E-36 8.2E-41 237.2 11.3 112 112-224 1-112 (112)
13 2gw8_A PII signal transduction 100.0 4.2E-36 1.4E-40 236.7 11.1 113 111-224 2-114 (114)
14 3ce8_A Putative PII-like nitro 99.9 4.7E-26 1.6E-30 183.9 9.5 100 106-215 15-120 (120)
15 3dfe_A Putative PII-like signa 99.9 8.9E-25 3E-29 173.5 9.2 99 110-215 4-103 (111)
16 2cz4_A Hypothetical protein TT 99.9 7.4E-23 2.5E-27 164.1 9.4 89 110-209 23-111 (119)
17 3m05_A Uncharacterized protein 99.8 6.9E-19 2.4E-23 141.0 9.0 86 111-214 5-114 (114)
18 1o51_A Hypothetical protein TM 98.2 4.4E-06 1.5E-10 66.3 7.1 91 110-209 11-109 (114)
19 2dcl_A Hypothetical UPF0166 pr 97.8 7.9E-05 2.7E-09 60.2 8.4 98 111-218 8-113 (127)
20 2gx8_A NIF3-related protein; s 94.0 0.25 8.5E-06 46.4 9.6 81 111-192 160-247 (397)
21 2o66_A PII protein; regulation 93.9 0.076 2.6E-06 42.8 5.2 75 57-134 2-93 (135)
22 2nyd_A UPF0135 protein SA1388; 91.3 0.096 3.3E-06 48.7 2.8 79 112-191 135-220 (370)
23 3hlu_A Uncharacterized protein 85.5 2.4 8.3E-05 31.8 6.6 70 121-213 15-85 (96)
24 2vd3_A ATP phosphoribosyltrans 64.5 11 0.00036 34.1 5.8 52 94-145 234-285 (289)
25 3s1t_A Aspartokinase; ACT doma 60.2 37 0.0013 27.6 8.0 85 113-198 60-162 (181)
26 1nh8_A ATP phosphoribosyltrans 56.7 31 0.001 31.4 7.4 74 110-212 230-303 (304)
27 1h3d_A ATP-phosphoribosyltrans 55.3 11 0.00037 34.1 4.2 52 94-145 244-295 (299)
28 2vd3_A ATP phosphoribosyltrans 51.2 42 0.0014 30.2 7.3 75 110-212 214-288 (289)
29 2cz9_A Probable galactokinase; 49.0 31 0.0011 29.7 6.0 65 121-208 280-344 (350)
30 3h5d_A DHDPS, dihydrodipicolin 48.6 10 0.00036 33.6 3.0 88 120-209 26-114 (311)
31 2jsx_A Protein NAPD; TAT, proo 47.8 84 0.0029 23.4 8.6 66 115-208 10-75 (95)
32 3s5o_A 4-hydroxy-2-oxoglutarat 47.2 8.4 0.00029 34.1 2.1 88 120-209 33-120 (307)
33 3m5v_A DHDPS, dihydrodipicolin 46.5 8.3 0.00028 34.0 1.9 89 119-209 25-114 (301)
34 3l21_A DHDPS, dihydrodipicolin 46.0 7.7 0.00026 34.4 1.7 87 120-208 34-120 (304)
35 2dt9_A Aspartokinase; protein- 45.9 63 0.0022 25.4 7.0 81 114-196 61-159 (167)
36 3flu_A DHDPS, dihydrodipicolin 44.7 8 0.00027 34.0 1.6 88 120-209 26-113 (297)
37 2re1_A Aspartokinase, alpha an 43.3 45 0.0015 26.4 5.7 81 113-194 67-165 (167)
38 3qze_A DHDPS, dihydrodipicolin 42.7 8.1 0.00028 34.4 1.3 87 121-209 43-129 (314)
39 2ehh_A DHDPS, dihydrodipicolin 42.7 12 0.0004 32.8 2.3 88 119-208 18-105 (294)
40 3tak_A DHDPS, dihydrodipicolin 41.5 6.9 0.00024 34.3 0.6 87 120-208 20-106 (291)
41 1nh8_A ATP phosphoribosyltrans 41.3 33 0.0011 31.2 5.1 52 93-145 249-300 (304)
42 3si9_A DHDPS, dihydrodipicolin 41.1 6.8 0.00023 35.0 0.5 88 120-209 41-128 (315)
43 3qfe_A Putative dihydrodipicol 40.9 7.8 0.00027 34.6 0.9 87 120-208 30-116 (318)
44 3fkr_A L-2-keto-3-deoxyarabona 39.4 8.7 0.0003 34.1 1.0 87 120-208 27-113 (309)
45 3dz1_A Dihydrodipicolinate syn 39.2 10 0.00035 33.6 1.4 86 120-208 27-112 (313)
46 3a5f_A Dihydrodipicolinate syn 38.6 12 0.00043 32.6 1.8 87 120-208 20-106 (291)
47 2yxg_A DHDPS, dihydrodipicolin 38.1 14 0.00047 32.3 2.0 88 119-208 18-105 (289)
48 3b4u_A Dihydrodipicolinate syn 38.0 12 0.0004 32.9 1.5 87 120-208 22-108 (294)
49 3na8_A Putative dihydrodipicol 38.0 7.2 0.00025 34.8 0.2 88 120-209 43-130 (315)
50 1q9u_A Uncharacterized protein 37.9 34 0.0012 25.9 4.1 56 124-191 19-74 (130)
51 3cpr_A Dihydrodipicolinate syn 37.4 15 0.00051 32.4 2.1 87 120-208 35-121 (304)
52 3rpe_A MDAB, modulator of drug 37.4 1.2E+02 0.0041 25.6 7.8 22 181-209 73-94 (218)
53 4dpp_A DHDPS 2, dihydrodipicol 37.3 14 0.00048 34.0 2.0 87 120-208 78-164 (360)
54 3daq_A DHDPS, dihydrodipicolin 37.2 13 0.00044 32.6 1.7 88 119-208 20-107 (292)
55 1o5k_A DHDPS, dihydrodipicolin 37.1 13 0.00045 32.8 1.7 88 119-208 30-117 (306)
56 2wkj_A N-acetylneuraminate lya 37.0 13 0.00044 32.8 1.6 87 120-208 30-116 (303)
57 1f6k_A N-acetylneuraminate lya 36.3 16 0.00053 32.0 2.1 87 120-208 22-109 (293)
58 4f3q_A Transcriptional regulat 35.7 23 0.00079 31.2 3.0 23 167-191 204-226 (247)
59 1osc_A Similar to divalent cat 35.4 1.6E+02 0.0056 23.2 8.4 84 98-192 9-95 (126)
60 1xky_A Dihydrodipicolinate syn 34.6 14 0.00049 32.5 1.6 86 121-208 32-117 (301)
61 3lh2_S 4E10_1VI7A_S0_002_N (T8 33.9 13 0.00046 25.9 1.0 29 166-194 37-65 (76)
62 2ojp_A DHDPS, dihydrodipicolin 33.1 12 0.00041 32.7 0.8 87 120-208 20-106 (292)
63 1pie_A Galactokinase; galactos 32.6 48 0.0016 29.8 4.7 72 120-214 343-415 (419)
64 3eb2_A Putative dihydrodipicol 32.3 7.3 0.00025 34.4 -0.7 88 120-209 23-110 (300)
65 2a2c_A N-acetylgalactosamine k 32.1 82 0.0028 29.2 6.4 53 120-195 398-450 (478)
66 3dfe_A Putative PII-like signa 31.0 60 0.0021 24.8 4.4 29 168-196 4-32 (111)
67 2v9d_A YAGE; dihydrodipicolini 30.5 15 0.00052 33.1 1.0 88 120-209 50-137 (343)
68 3gx1_A LIN1832 protein; APC633 30.4 52 0.0018 25.6 4.0 34 175-208 37-70 (130)
69 2r8w_A AGR_C_1641P; APC7498, d 30.3 16 0.00053 32.9 1.0 87 120-208 53-139 (332)
70 3c19_A Uncharacterized protein 29.9 1.8E+02 0.0062 24.6 7.6 64 111-192 11-79 (186)
71 3rrk_A V-type ATPase 116 kDa s 29.5 30 0.001 30.5 2.8 34 109-142 11-44 (357)
72 2vc6_A MOSA, dihydrodipicolina 29.2 13 0.00046 32.4 0.4 88 119-208 18-105 (292)
73 3e96_A Dihydrodipicolinate syn 28.2 12 0.00042 33.1 0.0 87 120-209 31-117 (316)
74 1j3m_A The conserved hypotheti 27.7 48 0.0016 25.2 3.3 78 124-216 16-93 (129)
75 1hwu_A PII protein; herbaspiri 27.5 57 0.002 24.3 3.7 25 171-195 2-26 (112)
76 2eg2_A Nitrogen regulatory pro 27.1 59 0.002 24.3 3.7 25 171-195 2-26 (112)
77 3ab4_A Aspartokinase; aspartat 27.0 2E+02 0.0069 26.1 8.0 82 114-196 309-408 (421)
78 3d0c_A Dihydrodipicolinate syn 26.9 16 0.00054 32.4 0.5 86 120-208 31-116 (314)
79 3mhy_A PII-like protein PZ; PI 26.9 61 0.0021 24.5 3.8 25 171-195 2-26 (112)
80 3bzq_A Nitrogen regulatory pro 26.5 61 0.0021 24.2 3.7 25 171-195 4-28 (114)
81 2rfg_A Dihydrodipicolinate syn 26.4 14 0.00048 32.5 0.0 88 119-208 18-105 (297)
82 2ns1_B Nitrogen regulatory pro 26.4 61 0.0021 24.4 3.7 26 170-195 5-30 (116)
83 2gw8_A PII signal transduction 25.9 64 0.0022 24.2 3.7 25 171-195 4-28 (114)
84 2q62_A ARSH; alpha/beta, flavo 25.9 3E+02 0.01 23.2 9.1 24 179-209 86-109 (247)
85 2j9c_A GLNK1, hypothetical nit 25.9 63 0.0022 24.5 3.7 25 171-195 4-28 (119)
86 1vfj_A Nitrogen regulatory pro 25.7 64 0.0022 24.2 3.7 25 171-195 2-26 (116)
87 2zvy_A Chemotaxis protein MOTB 25.3 83 0.0028 25.8 4.6 58 120-184 117-174 (183)
88 1w3i_A EDA, 2-keto-3-deoxy glu 25.2 47 0.0016 28.9 3.2 85 120-209 18-102 (293)
89 2dtj_A Aspartokinase; protein- 24.7 2.5E+02 0.0087 22.2 7.3 80 115-195 61-158 (178)
90 4aff_A Nitrogen regulatory pro 24.1 64 0.0022 24.7 3.5 25 171-195 2-26 (116)
91 1pdo_A Mannose permease; phosp 24.1 84 0.0029 24.1 4.2 31 178-208 37-67 (135)
92 3ncq_A Nitrogen regulatory pro 24.1 66 0.0023 24.9 3.5 25 171-195 2-26 (119)
93 2nuw_A 2-keto-3-deoxygluconate 24.1 43 0.0015 29.1 2.7 85 120-209 18-102 (288)
94 3t9z_A GLNK3, nitrogen regulat 23.1 69 0.0024 24.7 3.5 25 171-195 2-26 (118)
95 2r91_A 2-keto-3-deoxy-(6-phosp 22.5 37 0.0013 29.5 2.0 85 119-208 16-100 (286)
96 2zov_A Chemotaxis protein MOTB 22.3 1E+02 0.0035 25.9 4.6 61 120-187 128-188 (210)
97 3mah_A Aspartokinase; aspartat 21.9 1.7E+02 0.0059 22.6 5.7 81 114-195 58-151 (157)
98 2gjf_A Designed protein; proca 20.9 1.4E+02 0.0048 20.5 4.5 35 107-141 38-75 (78)
99 2fzv_A Putative arsenical resi 20.8 4.2E+02 0.014 23.1 8.5 23 179-208 111-133 (279)
100 3mdo_A Putative phosphoribosyl 20.8 1.1E+02 0.0036 28.7 4.8 42 104-145 329-371 (389)
101 2cz4_A Hypothetical protein TT 20.3 1.1E+02 0.0037 23.6 4.1 28 168-195 23-50 (119)
102 3l7p_A Putative nitrogen regul 20.2 83 0.0028 24.0 3.4 24 171-194 4-27 (115)
103 1kr4_A Protein TM1056, CUTA; s 20.1 3.2E+02 0.011 21.5 7.8 86 111-210 22-109 (125)
No 1
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=100.00 E-value=3.8e-40 Score=269.59 Aligned_cols=129 Identities=77% Similarity=1.122 Sum_probs=102.6
Q ss_pred cchhcccceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHH
Q 026531 104 SSMYFFFHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVE 183 (237)
Q Consensus 104 ~~~~~~~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE 183 (237)
+++||-.+||+|+|||||+|+++|++||.++|++|+|+++|+|+|+|+|.++.|+|.++..+++.||++|+++|+|++++
T Consensus 5 ~~~~~~~~MK~I~AIIr~~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve 84 (135)
T 2o66_A 5 SDYIPDSKFYKVEAIVRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVE 84 (135)
T ss_dssp CSCSSCCSEEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHH
T ss_pred cCcCCCCCeEEEEEEECHHHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHH
Confidence 46788899999999999999999999999999999999999999999998888999998753589999999999999999
Q ss_pred HHHHHHHHHhccCCCCCeEEEEEecCcEEEcccCCcchhhhhcCCCcccccc
Q 026531 184 GVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERMAGGWSDISS 235 (237)
Q Consensus 184 ~VVEaI~eaa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al~~~~~~~~~~~ 235 (237)
+++++|.++++||++|||||||+||++++||||||+|++|++|+| ||.+
T Consensus 85 ~Vv~~I~~~~~tg~~GdGkIFV~pVe~~vrIrTge~g~~al~~~~---~~~~ 133 (135)
T 2o66_A 85 SVINTIIEGARTGEIGDGKIFVLPVSDVIRVRTGERGEKAEKMTG---DMLS 133 (135)
T ss_dssp HHHHHHHHHHCCSSTTCCEEEEEEECEEEETTTCCBGGGTC-----------
T ss_pred HHHHHHHHHhCCCCCCCEEEEEEEhHHEEEecCCCccHHHHhhcc---CCcC
Confidence 999999999999999999999999999999999999999999999 6654
No 2
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=100.00 E-value=1.9e-39 Score=260.53 Aligned_cols=114 Identities=44% Similarity=0.687 Sum_probs=109.9
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|+|||||+|+++|++||.++|++|||+++|+|+|+|+|.++.|+|.++..+ +.||++||++|+|+++++++++|++
T Consensus 1 MK~I~AIIrp~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~-~~pK~kieivV~de~ve~vv~~I~~ 79 (119)
T 3ncq_A 1 MKKIEAIVRAEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVT-LLPKVKLEIVVKDDAVEEVIGLIVN 79 (119)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCC-CEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccceeeec-ccceEEEEEEEcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999899999999874 9999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCcEEEcccCCcchhhhhc
Q 026531 192 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERM 226 (237)
Q Consensus 192 aa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al~~ 226 (237)
+|+||++|||||||+||++++||||||+|++|+.-
T Consensus 80 ~a~TG~~GDGkIFV~~Ve~~vrIrTge~g~~a~~~ 114 (119)
T 3ncq_A 80 SAFTGSPGDGKIFIIPVEDVVRIRTGERGDDSLEH 114 (119)
T ss_dssp HHCCSSTTCCEEEEEECSEEEETTTCCBSGGGC--
T ss_pred HhcCCCCCCCEEEEEEhHheEEecCCCccHHHHhh
Confidence 99999999999999999999999999999999864
No 3
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=100.00 E-value=9.4e-40 Score=260.83 Aligned_cols=112 Identities=54% Similarity=0.862 Sum_probs=104.5
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|+|||||+|+++|++||.++|++|+|+++|+|+|+|+|.++.|+|.++..+ +.||++||++|+|+++++++++|.+
T Consensus 1 MK~I~AIIrp~kl~~vk~AL~~~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~-~~pK~kieivV~d~~ve~vv~~I~~ 79 (116)
T 4aff_A 1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLEIVVEDAQVDTVIDKIVA 79 (116)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECCCCC------CCCSSCCC-CEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcccCCCccccccceeeec-ccceEEEEEEEcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999899999999885 9999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 192 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 192 aa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
+++||++|||||||+||++++||||||+|++|+
T Consensus 80 ~a~Tg~~GDGkIFV~~Ve~~vrIrtge~g~~al 112 (116)
T 4aff_A 80 AARTGENGDGKIFVSPVDQTIRIRTGEKNADAI 112 (116)
T ss_dssp HHCCSSTTCEEEEEEECSCCBCTTTCCBTHHHH
T ss_pred HhcCCCCCCeEEEEEEhHHeEEecCCCchHHHH
Confidence 999999999999999999999999999999999
No 4
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=100.00 E-value=1.8e-39 Score=256.79 Aligned_cols=112 Identities=46% Similarity=0.791 Sum_probs=101.0
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|+|||||+|+++|++||.++|++|||+++|+|+|+|+|.++.|+|.++..+ ++||++||++|+|+++++++++|.+
T Consensus 1 MK~I~aIIr~~kl~~vk~AL~~~G~~g~Tv~~v~G~G~q~g~~~~yrG~~~~~~-~~pK~kieivV~d~~v~~vv~~I~~ 79 (112)
T 3mhy_A 1 MKLVMAIIKPFKLDEVREALTSLGIQGLTVSEVKGFGRQKGQTEIYRGAEYSVS-FLPKVKVEVAVSDDQYEQVVEAIQK 79 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHHTCCCEEEEEEEEECTTTTCC---------CC-CEEEEEEEEEECTTTHHHHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCeEEEEEEEeEccccCCcceeccceeeec-ccceEEEEEEEchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998899999999874 9999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 192 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 192 aa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
+++||++|||||||+||++++||||||+|++||
T Consensus 80 ~~~tg~~GdGkIfV~~v~~~~rirtge~g~~a~ 112 (112)
T 3mhy_A 80 AANTGRIGDGKIFVLDIAQAVRIRTGETNTEAL 112 (112)
T ss_dssp HHCCSSTTCCEEEEEECSEEEETTTCCBGGGTC
T ss_pred HhcCCCCCCeEEEEEEhHheEEecCCCcccccC
Confidence 999999999999999999999999999999986
No 5
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=100.00 E-value=1.7e-39 Score=259.04 Aligned_cols=113 Identities=42% Similarity=0.691 Sum_probs=81.2
Q ss_pred ceeEEEEEECCCCHHHHHHHHHhCCC-ceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHH
Q 026531 111 HLLLISGRIRPWRVQQVSSALLNMGI-RGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKI 189 (237)
Q Consensus 111 ~MKlIeAIIRp~KLdeV~eAL~e~GV-~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI 189 (237)
.||+|+|||||+|+++|++||.++|+ +|||+++|+|+|+|+|.++.|+|.++..+ ++||++||++|+|+++++++++|
T Consensus 2 ~MKkI~AIIrp~kl~~Vk~AL~~~G~d~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~-~~pk~kieivV~d~~ve~vv~~I 80 (115)
T 3l7p_A 2 SMKKIEAIIRSDKLEDLKAALVQSGFIKGMTISQVLGFGNQRGYTEYVRGQKITPT-LLAKVKVEIVAHDAAVEEMITTI 80 (115)
T ss_dssp -CEEEEEEEEGGGHHHHHHHHHHHTCGGGEEEEEEEEEC----------------C-EEEEEEEEEEECGGGHHHHHHHH
T ss_pred ceEEEEEEECHHHHHHHHHHHHHCCCCccEEEEEEEeEcccCCCceeeccceeeec-ccceEEEEEEEcHHHHHHHHHHH
Confidence 39999999999999999999999999 99999999999999999899999999874 99999999999999999999999
Q ss_pred HHHhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 190 MEEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 190 ~eaa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
.++++||++|||||||+||++++||||||+|++||
T Consensus 81 ~~~a~tg~~GDGkIFV~~ve~~vrIrtge~g~~al 115 (115)
T 3l7p_A 81 SQAVKTGEVGDGKIFVSPVDEIVRIRTGERDGDAI 115 (115)
T ss_dssp HHHHCCC----CEEEEEECSEEEEC----------
T ss_pred HHHhcCCCCCCcEEEEEEhHheEEecCCCcccccC
Confidence 99999999999999999999999999999999996
No 6
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=100.00 E-value=7.7e-39 Score=256.65 Aligned_cols=112 Identities=38% Similarity=0.674 Sum_probs=93.5
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|+|||||+|+++|++||.++|++|||+++|+|+|+|+|.++.|+|.++..+ +.||++||++|+|+++++++++|.+
T Consensus 1 MK~I~AIIrp~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~-~~pK~~ieivV~de~ve~Vv~~I~~ 79 (118)
T 3t9z_A 1 MKMVVAVIRPEKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVD-LLQKTKVEVVVSDDAVDEVVEAIVS 79 (118)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTCCCEEEEEEEEEC------------------CEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCCceEEEEeeEeecCcCCCccccccceeeec-ccceEEEEEEEChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999899999999874 8999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 192 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 192 aa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
+++||++|||||||+||++++||||||+|+.|-
T Consensus 80 ~a~TG~~GDGkIFV~~Ve~~vrIrTge~g~~~~ 112 (118)
T 3t9z_A 80 SARTGKFGDGRIFVIPVEKSVKIRTGDEEVAAA 112 (118)
T ss_dssp HHCCSSTTCCEEEEEECCEEEETTTCCEEECCC
T ss_pred HhcCCCCCCeEEEEEEhHHeEEeccCCcccccc
Confidence 999999999999999999999999999999774
No 7
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=100.00 E-value=1e-36 Score=238.95 Aligned_cols=112 Identities=45% Similarity=0.793 Sum_probs=96.8
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|+|||||+++++|++||.++|++|+|+++++|+|+|++.++.|+|.++.. ++.||++|+++|+|+++++++++|++
T Consensus 1 Mk~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~-~~~~k~~ieivv~d~~v~~vv~~I~~ 79 (112)
T 1hwu_A 1 MKQVTAIIKPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVV-DFLPKVKIEVVVDDKVVEQAVDAIIK 79 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCC-CEEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccc-cccceEEEEEEEcHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999888899999886 48999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 192 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 192 aa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
+++||++|||||||+||++++||||||+|++|+
T Consensus 80 ~~~tg~~GdGkiFV~~V~~~~rirtge~g~~a~ 112 (112)
T 1hwu_A 80 AARTGKIGDGKIFVQEVEQVIRIRTGETGPDAV 112 (112)
T ss_dssp HHCCSSTTCCEEEEEECSEEEETTTCCBGGGTC
T ss_pred HhcCCCCCCEEEEEEEhHHEEEecCCCcCcccC
Confidence 999999999999999999999999999999986
No 8
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=100.00 E-value=3.2e-36 Score=239.59 Aligned_cols=115 Identities=46% Similarity=0.715 Sum_probs=111.1
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|+|||||+++++|++||.++|++|+|+++++|+|++++.++.|+|..+.. ++.||++|+++|+|+++++++++|++
T Consensus 3 Mk~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~-~~~pK~~ieivv~de~v~~vv~~I~~ 81 (119)
T 2j9c_A 3 MKKVEAIIRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIV-DLIPKVKIELVVKEEDVDNVIDIICE 81 (119)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSS-SCEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred eEEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeecccccc-ccCcEEEEEEEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888899999876 58999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCcEEEcccCCcchhhhhcC
Q 026531 192 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERMA 227 (237)
Q Consensus 192 aa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al~~~ 227 (237)
+++||++|||||||+||++++||||||+|++|++..
T Consensus 82 ~~~tg~~GdGkiFV~pVe~~~rirtge~g~~a~~~~ 117 (119)
T 2j9c_A 82 NARTGNPGDGKIFVIPVERVVRVRTKEEGKEALLEH 117 (119)
T ss_dssp HHCCSSTTCEEEEEEEECEEEETTTCCBSGGGGSCC
T ss_pred HhcCCCCCCEEEEEEEhHHEEEecCCCcchhHhhcc
Confidence 999999999999999999999999999999999854
No 9
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=100.00 E-value=1.9e-36 Score=239.67 Aligned_cols=113 Identities=44% Similarity=0.780 Sum_probs=109.5
Q ss_pred ceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHH
Q 026531 111 HLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIM 190 (237)
Q Consensus 111 ~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~ 190 (237)
.||+|+|||||+++++|++||.++|++|+|+++++|+|+|++..+.|+|..+..+ +.||++||++|+|+++++++++|+
T Consensus 4 ~Mk~I~aIIr~~~~~~v~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~-~~~k~~ieivv~de~v~~vv~~I~ 82 (116)
T 2ns1_B 4 SMKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVN-FLPKVKIDVAIADDQLDEVIDIVS 82 (116)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCC-CEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred ceEEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeEcCcCCCccceecceeecc-cccEEEEEEEEcHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999998889999998874 899999999999999999999999
Q ss_pred HHhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 191 EEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 191 eaa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
++++||++|||||||+||++++||||||+|++|+
T Consensus 83 ~~~~tg~~GdGkiFV~pVe~~~rirtge~g~~a~ 116 (116)
T 2ns1_B 83 KAAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL 116 (116)
T ss_dssp HHHCCSSTTCCEEEEEEESCCBCTTTCCBGGGGC
T ss_pred HHhcCCCCCCEEEEEEEhHHEEEecCCCcCcccC
Confidence 9999999999999999999999999999999986
No 10
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=100.00 E-value=3.4e-36 Score=237.62 Aligned_cols=114 Identities=39% Similarity=0.635 Sum_probs=110.3
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|+|||||+++++|++||.++|++|+|+++++|+|++++..+.|+|..+.. ++.||++|+++|+|+++++++++|++
T Consensus 1 Mk~I~aII~~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~-~~~~k~~ieivv~de~v~~vv~~I~~ 79 (116)
T 1vfj_A 1 MKLIVAIVRPEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKM-ELHEKVRLEIGVSEPFVKPTVEAILK 79 (116)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCST-TCEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeee-ccCceEEEEEEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888999999876 49999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCcEEEcccCCcchhhhhc
Q 026531 192 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAERM 226 (237)
Q Consensus 192 aa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al~~ 226 (237)
+++||++|||||||+||++++||||||+|++|++.
T Consensus 80 ~~~tg~~GdGkiFV~pVe~~~~irtge~g~~a~~~ 114 (116)
T 1vfj_A 80 AARTGEVGDGKIFVLPVEKVYRIRTGEEDEAAVTP 114 (116)
T ss_dssp HHCCSSTTCCEEEEEECSEEEETTTCCBTHHHHSC
T ss_pred HhcCCCCCCEEEEEEEhHHeEEecCCCcchHhhcc
Confidence 99999999999999999999999999999999954
No 11
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=100.00 E-value=2e-36 Score=237.98 Aligned_cols=113 Identities=45% Similarity=0.830 Sum_probs=96.0
Q ss_pred ceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHH
Q 026531 111 HLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIM 190 (237)
Q Consensus 111 ~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~ 190 (237)
.||+|+|||||+++++|++||.++|++|+|+++++|+|+|+|.++.|+|.++.. ++.||++|+++|+|+++++++++|+
T Consensus 2 ~Mk~I~aIIr~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~-~~~~k~~ieivv~de~v~~vv~~I~ 80 (114)
T 3bzq_A 2 HMKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSV-DFVPKVRIEVVVDDSIVDKVVDSIV 80 (114)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECC----------------CEEEEEEEEEEEETTTHHHHHHHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceecccccc-ccccEEEEEEEECHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999998878899999876 4899999999999999999999999
Q ss_pred HHhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 191 EEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 191 eaa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
++++||++|||||||+||++++||||||+|++|+
T Consensus 81 ~~~~tg~~GdGkiFV~pVe~~~rirtge~g~~a~ 114 (114)
T 3bzq_A 81 RAARTGKIGDGKVWVSPVDTIVRVRTGERGHDAL 114 (114)
T ss_dssp HHHCCSSTTCCEEEEEEESCCBCTTTCCBGGGGC
T ss_pred HHhcCCCCCCEEEEEEEhHHeEEecCCCcCcccC
Confidence 9999999999999999999999999999999986
No 12
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=100.00 E-value=2.4e-36 Score=237.18 Aligned_cols=112 Identities=49% Similarity=0.885 Sum_probs=93.4
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
||+|+|||||+++++|++||.++|++|+|+++++|+|+|++.++.|+|..+.. ++.||++|+++|+|+++++++++|++
T Consensus 1 Mk~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~-~~~~k~~ieivv~d~~v~~vv~~I~~ 79 (112)
T 2eg2_A 1 MKKIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVI-DFLPKVKIEVVVRDEDVEKVVETIVK 79 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEC------------------CCEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeecccccc-ccccEEEEEEEEcHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998888999999876 48999999999999999999999999
Q ss_pred HhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 192 EARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 192 aa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
+++||++|||||||+||++++||||||+|++|+
T Consensus 80 ~~~tg~~GdGkiFV~pVe~~~rirtge~g~~a~ 112 (112)
T 2eg2_A 80 TAQTGRVGDGKIFIIPVEDVIRIRTGERGEQAI 112 (112)
T ss_dssp HHCCSSTTCCEEEEEECSCCBCTTTCCBGGGTC
T ss_pred HhcCCCCCCEEEEEEEhHhEEEecCCCcccccC
Confidence 999999999999999999999999999999986
No 13
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=100.00 E-value=4.2e-36 Score=236.75 Aligned_cols=113 Identities=47% Similarity=0.829 Sum_probs=96.6
Q ss_pred ceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHH
Q 026531 111 HLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIM 190 (237)
Q Consensus 111 ~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~ 190 (237)
.||+|+|||||+++++|++||.++|++|+|+++++|+|+|++.++.|+|.++.. ++.||++|+++|+|+++++++++|+
T Consensus 2 ~Mk~I~aII~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~-~~~~K~~ieivv~d~~v~~vv~~I~ 80 (114)
T 2gw8_A 2 PMKKIEAIVKPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAV-DFLPKIKIELVLADDAVERAIDVIV 80 (114)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHTTCCCCEEEEEEEECC--------------C-CEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCCccceecccccc-cccceEEEEEEEcHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999999888899999876 4899999999999999999999999
Q ss_pred HHhccCCCCCeEEEEEecCcEEEcccCCcchhhh
Q 026531 191 EEARTGEIGDGKIFLVPVSDVIRVRTGERGEKAE 224 (237)
Q Consensus 191 eaa~TGe~GDGKIFVspVedaVRIRTGE~Ge~Al 224 (237)
++++||++|||||||+||++++||||||+|++|+
T Consensus 81 ~~~~tg~~GdGkiFV~pVe~~~rirtge~g~~a~ 114 (114)
T 2gw8_A 81 EVARSGKIGDGKIFVLPVEEAIRIRTGERSDAAV 114 (114)
T ss_dssp HHHCCSSTTCCEEEEEEESCCBCTTTSCBCCTTC
T ss_pred HHhCCCCCCCEEEEEEEhHHeEEecCCCcCcccC
Confidence 9999999999999999999999999999999986
No 14
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=99.93 E-value=4.7e-26 Score=183.90 Aligned_cols=100 Identities=14% Similarity=0.244 Sum_probs=84.8
Q ss_pred hhcc--cceeEEEEEECCCCHHHHHHHHHhC-CCceEEEEeeeeeccCCCC---cccccCccceecccceeEEEEEEEcC
Q 026531 106 MYFF--FHLLLISGRIRPWRVQQVSSALLNM-GIRGVTVSDVRGFGAQGGS---TERHGGSEFSEDKFVAKVKMEIVVSK 179 (237)
Q Consensus 106 ~~~~--~~MKlIeAIIRp~KLdeV~eAL~e~-GV~GmTVs~VrG~Grq~G~---~e~yrG~e~~vd~~vpKvkIEIVV~D 179 (237)
.||- ..+++|+|||||+|+|+|++||.+. |++|||+++|+|+|+|+|. +|.|+|.+ ||++||++|+|
T Consensus 15 ~~~~~~~~~~lI~aIIrP~kld~V~daL~~~~gi~G~TvseV~G~Grqkg~~S~~E~yrG~e-------pKvkiEivv~d 87 (120)
T 3ce8_A 15 LYFQGMSTEQLLVLIAQNDIKDDIVDTLIELEFLSGFSLGNICGFSREHSHFNIKEQVEGYR-------EFCKFEIMHPA 87 (120)
T ss_dssp -----CCSEEEEEEEEEGGGHHHHHHHHTTCTTCCCCEEEEEEEEECC-----------EEE-------EEEEEEEEEEG
T ss_pred eeecCCccceEEEEEeCHHHHHHHHHHHHhCCCCCcEEEEeeEEeCCCCCCCCceeEEecCC-------ceEEEEEEECH
Confidence 3553 6789999999999999999999998 9999999999999999998 88888865 89999999999
Q ss_pred ccHHHHHHHHHHHhccCCCCCeEEEEEecCcEEEcc
Q 026531 180 DQVEGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVR 215 (237)
Q Consensus 180 e~VE~VVEaI~eaa~TGe~GDGKIFVspVedaVRIR 215 (237)
+++++++++|.++++||+. ||||+||++++||+
T Consensus 88 ~~ve~vv~aI~~~a~tg~I---KIfV~pVe~~vRI~ 120 (120)
T 3ce8_A 88 AQQAALLTALALVCKHNPC---RYWIMPIYQNGTLS 120 (120)
T ss_dssp GGHHHHHHHHHHHTTTSCC---EEEEEECSCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCE---EEEEEEhHHeEEeC
Confidence 9999999999999999988 99999999999985
No 15
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=99.91 E-value=8.9e-25 Score=173.51 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=77.3
Q ss_pred cceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEE-cCccHHHHHHH
Q 026531 110 FHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVV-SKDQVEGVIDK 188 (237)
Q Consensus 110 ~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV-~De~VE~VVEa 188 (237)
++||+|+|||+|+++++|++||.++|++|||+++|+|+|+|++++. +..+.. ++.+|++||++| +|+++|+++++
T Consensus 4 ~~mKkIeaIi~p~kl~~V~~aL~~~Gv~G~TV~~v~G~G~q~~~~~---~~~~~~-~~~~kvkieivv~~de~vd~vv~~ 79 (111)
T 3dfe_A 4 KRANKLVIVTEKVLLKKVAKIIEEAGATGYTVVDTGGKGSRNVRST---GKPNTS-DTDSNVKFEVLTENREMAEKIADQ 79 (111)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHHTCSCCEEEEEBC----------------------CEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEEEECHHHHHHHHHHHHHCCCCcEEEEecEeecCCCCCcC---ceEEEe-ccCCceEEEEEECCHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999987541 222333 489999999999 79999999999
Q ss_pred HHHHhccCCCCCeEEEEEecCcEEEcc
Q 026531 189 IMEEARTGEIGDGKIFLVPVSDVIRVR 215 (237)
Q Consensus 189 I~eaa~TGe~GDGKIFVspVedaVRIR 215 (237)
|.+.+.|+. +|+|||+|| +++|-.
T Consensus 80 I~~~~~t~~--~G~ifVsdV-~vvR~~ 103 (111)
T 3dfe_A 80 VAIKFFTDY--AGIIYICEA-EVLYGR 103 (111)
T ss_dssp HHHHHTTTS--CEEEEEEEE-EEEEC-
T ss_pred HHHHhhCCC--CEEEEEEEe-eEEecc
Confidence 999999988 599999999 898864
No 16
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=99.88 E-value=7.4e-23 Score=164.09 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=83.3
Q ss_pred cceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHH
Q 026531 110 FHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKI 189 (237)
Q Consensus 110 ~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI 189 (237)
.+||+|+|||||.++++|++||.++|++|+|+++|+|+|+|++.++.|+| +|++||++|+|+++++++++|
T Consensus 23 ~~mK~I~aIIr~~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g---------~kv~IeiVv~de~ve~vv~~I 93 (119)
T 2cz4_A 23 VPLKLVTIVAESLLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEG---------QNIRLETIVSEEVALRILQRL 93 (119)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTT---------CEEEEEEEECHHHHHHHHHHH
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccC---------CCEEEEEEECHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999887666653 789999999999999999999
Q ss_pred HHHhccCCCCCeEEEEEecC
Q 026531 190 MEEARTGEIGDGKIFLVPVS 209 (237)
Q Consensus 190 ~eaa~TGe~GDGKIFVspVe 209 (237)
.+.++||+. |||||+||+
T Consensus 94 ~~~~~tg~~--GkIFV~~Ve 111 (119)
T 2cz4_A 94 QEEYFPHYA--VIAYVENVW 111 (119)
T ss_dssp HHHTTTTSC--CEEEEEEEE
T ss_pred HHHhcCCCC--EEEEEEEeE
Confidence 999999976 899999997
No 17
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=99.77 E-value=6.9e-19 Score=141.02 Aligned_cols=86 Identities=20% Similarity=0.387 Sum_probs=78.7
Q ss_pred ceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHH
Q 026531 111 HLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIM 190 (237)
Q Consensus 111 ~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~ 190 (237)
.||+|+|||||+|+++|++||.++|+.|++++.+.|+|+++ |+++|++|+|+++|+++++|.
T Consensus 5 ~MKlI~AIIrp~kld~V~~AL~~~G~~~t~v~~~gGf~r~g------------------~~~leivV~De~Vd~vi~~I~ 66 (114)
T 3m05_A 5 ATKLVIAIVQDKDANYLSDQFIDQNVRATKLSTTGGFLQSG------------------NTTFMIGIEEERVPEVLEIIK 66 (114)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHTTCCEEEEEEEETTTTEE------------------EEEEEEEEEGGGHHHHHHHHH
T ss_pred eEEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEeccccccC------------------CEEEEEEEcHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999998873 478999999999999999999
Q ss_pred HHhccCC------------------------CCCeEEEEEecCcEEEc
Q 026531 191 EEARTGE------------------------IGDGKIFLVPVSDVIRV 214 (237)
Q Consensus 191 eaa~TGe------------------------~GDGKIFVspVedaVRI 214 (237)
++|+|-+ .|...|||.|||++.++
T Consensus 67 ~~a~TR~~~~~~~~~~~~~~~~~~~~pvev~vGGAtvFvl~ve~f~k~ 114 (114)
T 3m05_A 67 KASHTREEFMTPSVNMDVNMEGTTAYPIKVQVGGATVLVLPVDQFERF 114 (114)
T ss_dssp HHHCCEEEEECC-------------CCEEEEECCEEEEEEECSEEEEC
T ss_pred HHcCCceEEecCCCCCCcCcccccccceEEEEcceEEEEEEHHHeEEC
Confidence 9999922 27789999999999874
No 18
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=98.15 E-value=4.4e-06 Score=66.35 Aligned_cols=91 Identities=22% Similarity=0.315 Sum_probs=67.2
Q ss_pred cceeEEEEEECCCC-------HHHHHHHHHhCCCceEEEE-eeeeeccCCCCcccccCccceecccceeEEEEEEEcCcc
Q 026531 110 FHLLLISGRIRPWR-------VQQVSSALLNMGIRGVTVS-DVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQ 181 (237)
Q Consensus 110 ~~MKlIeAIIRp~K-------LdeV~eAL~e~GV~GmTVs-~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~ 181 (237)
..|+++.+++...+ .+.+.+.|+++|+.|.|+. .+.|+|+..-.. .+.-+... .-.-+.||++.++|+
T Consensus 11 ~~~~~Lriy~~E~~~~~g~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih---~~~~l~ls-~dlPV~Ie~Vd~~ek 86 (114)
T 1o51_A 11 HHMKLLKIYLGEKDKHSGKPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMH---RSDFFSLS-PDLPIVLEIVDEEER 86 (114)
T ss_dssp CEEEEEEEEEETTCEETTEEHHHHHHHHHHHTTCSCCEEEECSCCCCC-----------------CCCEEEEEEEECHHH
T ss_pred ceeEEEEEEECCccccCCeEHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEE---ccceeecC-CCCCEEEEEEcCHHH
Confidence 46999999997665 4789999999999999997 699999985221 11111110 112489999999999
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEEecC
Q 026531 182 VEGVIDKIMEEARTGEIGDGKIFLVPVS 209 (237)
Q Consensus 182 VE~VVEaI~eaa~TGe~GDGKIFVspVe 209 (237)
++++++.+.+... +|.|++.+|+
T Consensus 87 i~~~l~~l~~~v~-----~Glvt~e~V~ 109 (114)
T 1o51_A 87 INLFLKEIDNIDF-----DGLVFTADVN 109 (114)
T ss_dssp HHHHHHHHHTCCC-----CSEEEEEEEE
T ss_pred HHHHHHHHHHHhC-----CCEEEEEEEE
Confidence 9999999988765 4899999986
No 19
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=97.79 E-value=7.9e-05 Score=60.18 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=68.9
Q ss_pred ceeEEEEEECCCC-------HHHHHHHHHhCCCceEEEE-eeeeeccCCCCcccccCccceecccceeEEEEEEEcCccH
Q 026531 111 HLLLISGRIRPWR-------VQQVSSALLNMGIRGVTVS-DVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQV 182 (237)
Q Consensus 111 ~MKlIeAIIRp~K-------LdeV~eAL~e~GV~GmTVs-~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~V 182 (237)
+.+++.+++.... .+.+.+.|+++|+.|.|+. .+.|+|+..-.. .+.-+..+ .-.-+.|+++.+++.+
T Consensus 8 ~~~~LrIy~~E~d~~~g~pL~~~Iv~~a~~~GiaGaTV~rgi~GfG~~g~ih---~~~~l~ls-~dlPVvIe~Vd~~eki 83 (127)
T 2dcl_A 8 NTLRLRIYIGENDKWEGRPLYKVIVEKLREMGIAGATVYRGIYGFGKKSRVH---SSDVIRLS-TDLPIIVEVVDRGHNI 83 (127)
T ss_dssp SEEEEEEEEETTCEETTEEHHHHHHHHHHHTTCSCEEEEECSEEEC------------------CCCEEEEEEEEEHHHH
T ss_pred cEEEEEEEEccccccCCcCHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEe---cceeeecC-CCCCEEEEEEcCHHHH
Confidence 4578999996655 6789999999999999999 599999985311 11111110 1124899999999999
Q ss_pred HHHHHHHHHHhccCCCCCeEEEEEecCcEEEcccCC
Q 026531 183 EGVIDKIMEEARTGEIGDGKIFLVPVSDVIRVRTGE 218 (237)
Q Consensus 183 E~VVEaI~eaa~TGe~GDGKIFVspVedaVRIRTGE 218 (237)
+.+++.+.+... +|.|++.+|+ +++.++.+
T Consensus 84 ~~~l~~l~~lv~-----~GlVt~e~Ve-v~~~~~~~ 113 (127)
T 2dcl_A 84 EKVVNVIKPMIK-----DGMITVEPTI-VLWVGTQE 113 (127)
T ss_dssp HHHHHHHTTTCS-----SSEEEEEECE-EEECCSSC
T ss_pred HHHHHHHHHHhC-----CCEEEEEEEE-EEEecCCC
Confidence 999999988765 6899999987 56655433
No 20
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=93.99 E-value=0.25 Score=46.40 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=55.8
Q ss_pred ceeEEEEEECCCCHHHHHHHHHhCCCc---eE--EEEeeeeec--cCCCCcccccCccceecccceeEEEEEEEcCccHH
Q 026531 111 HLLLISGRIRPWRVQQVSSALLNMGIR---GV--TVSDVRGFG--AQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVE 183 (237)
Q Consensus 111 ~MKlIeAIIRp~KLdeV~eAL~e~GV~---Gm--TVs~VrG~G--rq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE 183 (237)
.++|+.++|+.+..++|++||-++|.. .+ .-+++.|.| ++...+..|-|..-.. +..+.++||++|+.....
T Consensus 160 ~~~Kl~v~vp~~~~~~v~~al~~aGag~ig~y~~csf~~~G~G~F~p~~~a~P~iG~~g~~-~~v~e~rie~i~p~~~~~ 238 (397)
T 2gx8_A 160 EMKKVVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQL-ERVEEVRIETIIPASLQR 238 (397)
T ss_dssp EEEEEEEEECHHHHHHHHHHHHHTTTTCBTTEEEEEEEEEEEEEEEEC-----------CC-EEEEEEEEEEEEEGGGHH
T ss_pred ccceeeEeccchhhHHHHHHhhhccccccccccccccccccceeeccccCCCCccCCcCcc-cccceeEEEEEecHHHHH
Confidence 478999999999999999999999754 22 233555665 4443345565654433 467899999999999999
Q ss_pred HHHHHHHHH
Q 026531 184 GVIDKIMEE 192 (237)
Q Consensus 184 ~VVEaI~ea 192 (237)
.|++++.++
T Consensus 239 ~v~~al~~~ 247 (397)
T 2gx8_A 239 KVIKAMVTA 247 (397)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999874
No 21
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=93.93 E-value=0.076 Score=42.80 Aligned_cols=75 Identities=31% Similarity=0.272 Sum_probs=46.5
Q ss_pred ccCCCCCCCCceeeeehhhhhHHHHHHHHHHHHHHhhcCCCC--------CCcc-ccchhc--------ccceeEEEEEE
Q 026531 57 QSSPDYIPDSKFYKVEAILRYEVQVLVKLGLLLLLLLLFPFF--------PSPL-LSSMYF--------FFHLLLISGRI 119 (237)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~--------~~~MKlIeAII 119 (237)
|+||||.|+.++.+|+||.|-+-.--||-.|-=.- ++-+ -... ..+.|. +.+-.+|+.++
T Consensus 2 ~~~~~~~~~~~MK~I~AIIr~~k~~~V~~AL~~~G---~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV 78 (135)
T 2o66_A 2 QISSDYIPDSKFYKVEAIVRPWRIQQVSSALLKIG---IRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVV 78 (135)
T ss_dssp --CCSCSSCCSEEEEEEEECGGGHHHHHHHHHHTT---CCCCEEEEEEECC---------------CCCCEEEEEEEEEE
T ss_pred ccCcCcCCCCCeEEEEEEECHHHHHHHHHHHHHCC---CceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEE
Confidence 88999999999999999999775444443332221 1110 0000 011121 23456899999
Q ss_pred CCCCHHHHHHHHHhC
Q 026531 120 RPWRVQQVSSALLNM 134 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~ 134 (237)
+.+++++|.+++.+.
T Consensus 79 ~de~ve~Vv~~I~~~ 93 (135)
T 2o66_A 79 KKDQVESVINTIIEG 93 (135)
T ss_dssp EGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999999987
No 22
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=91.33 E-value=0.096 Score=48.70 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=21.4
Q ss_pred eeEEEEEECCCCHHHHHHHHHhCCCc---eEE--EEeeeeecc--CCCCcccccCccceecccceeEEEEEEEcCccHHH
Q 026531 112 LLLISGRIRPWRVQQVSSALLNMGIR---GVT--VSDVRGFGA--QGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEG 184 (237)
Q Consensus 112 MKlIeAIIRp~KLdeV~eAL~e~GV~---GmT--Vs~VrG~Gr--q~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~ 184 (237)
++++.++|+.+..++|++||.++|.. .++ -+++.|.|. +...+..|-|..-.. +..+.++||++|+......
T Consensus 135 ~~kl~v~vP~~~~~~v~~al~~aGag~ig~Y~~csf~~~G~G~F~p~~~a~P~ig~~g~~-~~v~e~rie~i~~~~~~~~ 213 (370)
T 2nyd_A 135 YYKVQTYIPKDNVGPFKDKLSENGLAQEGNYEYCFFESEGRGQFKPVGEANPTIGQIDKI-EDVDEVKIEFMIDAYQKSR 213 (370)
T ss_dssp EEEEC----------------------------------------------------------------CEEECSTHHHH
T ss_pred cceeEEecchhhHHHHHHHHHhcccccccccccceecccccceeccccccCCcccccccc-ccccceEEEEEechhhHHH
Confidence 78999999999999999999999865 222 225666664 333334454544333 4678899999999999999
Q ss_pred HHHHHHH
Q 026531 185 VIDKIME 191 (237)
Q Consensus 185 VVEaI~e 191 (237)
|++++.+
T Consensus 214 v~~al~~ 220 (370)
T 2nyd_A 214 AEQLIKQ 220 (370)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9999974
No 23
>3hlu_A Uncharacterized protein DUF2179; alpha-beta half sandwich, structural genomics, PSI-2, protei structure initiative; 2.65A {Eubacterium ventriosum}
Probab=85.53 E-value=2.4 Score=31.84 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHh-CCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 121 PWRVQQVSSALLN-MGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 121 p~KLdeV~eAL~e-~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
.++-+++.+++.+ .| .|.|+.++.| ...+ -++..|.+||+..++.++.+.|.+.=-
T Consensus 15 S~~~eeI~~~I~~~l~-rGvT~~~g~G--~Ys~---------------~~~~vl~~Vv~r~e~~~l~~~I~~iDp----- 71 (96)
T 3hlu_A 15 SAKRKIIADRMLQELD-LGVTMLQAVG--AYKN---------------NETEVIMCVMRKATLVKVRNLLKEVDP----- 71 (96)
T ss_dssp CTTHHHHHHHHHHHSC-CCCEEEECEE--SSSS---------------SCCEEEEEEECHHHHHHHHHHHHTTCT-----
T ss_pred eCCHHHHHHHHHHhcC-CCEEEEEEEE--cccC---------------CCEEEEEEEecHHHHHHHHHHHHHHCC-----
Confidence 4578999999986 54 6888887655 2211 135799999999999999999987733
Q ss_pred CeEEEEEecCcEEE
Q 026531 200 DGKIFLVPVSDVIR 213 (237)
Q Consensus 200 DGKIFVspVedaVR 213 (237)
+..|-|+++.++.+
T Consensus 72 ~AFi~i~~v~eV~G 85 (96)
T 3hlu_A 72 DAFMIVSTANEVFG 85 (96)
T ss_dssp TCEEEEC-------
T ss_pred CeEEEEEeccEEEc
Confidence 26777778777754
No 24
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=64.46 E-value=11 Score=34.10 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=45.7
Q ss_pred cCCCCCCccccchhcccceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 026531 94 LFPFFPSPLLSSMYFFFHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVR 145 (237)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~Vr 145 (237)
+.|-.-+|..|..+---...-|.++|+...+.++++.|+++|..|+.++++.
T Consensus 234 ~lPg~~~PTV~~l~~~~~w~aV~~vv~~~~~~~~~~~Lk~~GA~~Ilv~~i~ 285 (289)
T 2vd3_A 234 LMPGMTGPTVSEVLSDNGVVAVHAVVDEKEVFNLINRLKAVGARDILVVPIE 285 (289)
T ss_dssp HCCCSSSCEEEECCSSSCEEEEEEEEETTTHHHHHHHHHTTTCEEEEEEECS
T ss_pred hcccCCCCceecccCCCCEEEEEEEEcHHHHHHHHHHHHHcCCCeEEEeChh
Confidence 4588889999887655567899999999999999999999999999998764
No 25
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=60.21 E-value=37 Score=27.63 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=58.4
Q ss_pred eEEEEEECCCCHHHHHHHHHhC----CC------ceEEEEeeeeeccCCCC--cc-cc-----cCccceecccceeEEEE
Q 026531 113 LLISGRIRPWRVQQVSSALLNM----GI------RGVTVSDVRGFGAQGGS--TE-RH-----GGSEFSEDKFVAKVKME 174 (237)
Q Consensus 113 KlIeAIIRp~KLdeV~eAL~e~----GV------~GmTVs~VrG~Grq~G~--~e-~y-----rG~e~~vd~~vpKvkIE 174 (237)
.-|...|+.+.++...+.|.+. |+ .++++..+-|.|-.... .. .| .+.++..- .....+|.
T Consensus 60 ~~isftv~~~~~~~a~~~L~~~~~el~~~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~I-stSei~Is 138 (181)
T 3s1t_A 60 TDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELI-STSEIRIS 138 (181)
T ss_dssp EEEEEEEETTTHHHHHHHHHHTHHHHCCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE-EEETTEEE
T ss_pred cEEEEEEehhHHHHHHHHHHHHHHhcCcceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEE-EcCCCEEE
Confidence 3577888898888888888764 44 46777788888764321 11 12 12222110 14588999
Q ss_pred EEEcCccHHHHHHHHHHHhccCCC
Q 026531 175 IVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 175 IVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
+++++++.++.++++.+....++.
T Consensus 139 ~vV~~~d~~~Av~aLH~~f~l~~~ 162 (181)
T 3s1t_A 139 VLCRDTELDKAVVALHEAFGLGGD 162 (181)
T ss_dssp EEEEGGGHHHHHHHHHHHHTCCC-
T ss_pred EEEeHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999887553
No 26
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=56.72 E-value=31 Score=31.37 Aligned_cols=74 Identities=12% Similarity=0.212 Sum_probs=58.9
Q ss_pred cceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHH
Q 026531 110 FHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKI 189 (237)
Q Consensus 110 ~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI 189 (237)
...++|..=++.++++++.+.| -|..+=||+.. +.+ + .+-|.++|+++++-++++.+
T Consensus 230 ~~~~~l~~nvp~~~l~~v~~~l--Pg~~~PTVspL---~~~-~-----------------wvAV~~vv~~~~~~~~~~~L 286 (304)
T 1nh8_A 230 QQYLMLDYDCPRSALKKATAIT--PGLESPTIAPL---ADP-D-----------------WVAIRALVPRRDVNGIMDEL 286 (304)
T ss_dssp TTEEEEEEEEEGGGHHHHHHHC--CCSSSCEEEEC---SST-T-----------------EEEEEEEEEGGGHHHHHHHH
T ss_pred cceEEEEEeCCHHHHHHHHHhc--cCCCCCeeeec---CCC-C-----------------eEEEEEEEcHHHHHHHHHHH
Confidence 5688999999999999998887 46677788776 111 1 25789999999999999999
Q ss_pred HHHhccCCCCCeEEEEEecCcEE
Q 026531 190 MEEARTGEIGDGKIFLVPVSDVI 212 (237)
Q Consensus 190 ~eaa~TGe~GDGKIFVspVedaV 212 (237)
.+.+- --|.|+|++.++
T Consensus 287 k~~GA------~~Ilv~~I~k~~ 303 (304)
T 1nh8_A 287 AAIGA------KAILASDIRFCR 303 (304)
T ss_dssp HHTTC------EEEEEECCSCCC
T ss_pred HHcCC------CeEEEeChhHhh
Confidence 98844 579999998753
No 27
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=55.26 E-value=11 Score=34.14 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=40.5
Q ss_pred cCCCCCCccccchhcccceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 026531 94 LFPFFPSPLLSSMYFFFHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVR 145 (237)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~Vr 145 (237)
+.|-.-+|..|..|--....-|.++|+...+.++++.|+++|..|+.++++.
T Consensus 244 ~lPg~~~PTVs~l~~~~~wvAV~~vv~~~~~~~~~~~Lk~~GA~~Ilv~~I~ 295 (299)
T 1h3d_A 244 LLPGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVLPIE 295 (299)
T ss_dssp HSCCSSCCCBCCCC-------BEEEESSCCCHHHHHHHHHTTCCSCEEECCS
T ss_pred hcCCCCCCccccccCCCCEEEEEEEEcHHHHHHHHHHHHHcCCCeEEEechH
Confidence 4688989998887644446789999999999999999999999999998764
No 28
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=51.16 E-value=42 Score=30.18 Aligned_cols=75 Identities=24% Similarity=0.353 Sum_probs=58.4
Q ss_pred cceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHH
Q 026531 110 FHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKI 189 (237)
Q Consensus 110 ~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI 189 (237)
...++|..=++.++++++.+.| -|..+=||+...+ .. ..+-|.++|+++++-++++.+
T Consensus 214 ~~~~~~~~n~p~~~l~~v~~~l--Pg~~~PTV~~l~~---~~-----------------~w~aV~~vv~~~~~~~~~~~L 271 (289)
T 2vd3_A 214 EGKRLVMLNIDRKNLDRVRALM--PGMTGPTVSEVLS---DN-----------------GVVAVHAVVDEKEVFNLINRL 271 (289)
T ss_dssp TTEEEEEEEEEGGGHHHHHHHC--CCSSSCEEEECCS---SS-----------------CEEEEEEEEETTTHHHHHHHH
T ss_pred ccEEEEEEeCCHHHHHHHHHhc--ccCCCCceecccC---CC-----------------CEEEEEEEEcHHHHHHHHHHH
Confidence 6688999999999999999887 3666777776521 00 125789999999999999999
Q ss_pred HHHhccCCCCCeEEEEEecCcEE
Q 026531 190 MEEARTGEIGDGKIFLVPVSDVI 212 (237)
Q Consensus 190 ~eaa~TGe~GDGKIFVspVedaV 212 (237)
++.+ .--|.|+|++.++
T Consensus 272 k~~G------A~~Ilv~~i~k~~ 288 (289)
T 2vd3_A 272 KAVG------ARDILVVPIERII 288 (289)
T ss_dssp HTTT------CEEEEEEECSCCC
T ss_pred HHcC------CCeEEEeChhHhh
Confidence 8874 4579999998753
No 29
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=49.00 E-value=31 Score=29.66 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCCC
Q 026531 121 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGD 200 (237)
Q Consensus 121 p~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~GD 200 (237)
...++++++.+++.|+.|..++ |-|-. + .+..+++++.++++.+.+.+......--+
T Consensus 280 ~p~l~~l~~~~~~~Ga~ga~ls---GaG~G-~-------------------~v~~l~~~~~~~~~~~~l~~~~~~~~~~~ 336 (350)
T 2cz9_A 280 CKELDFFVERALKLGAYGARLT---GAGFG-G-------------------SAIALVDKEDAETIGEEILREYLKRFPWK 336 (350)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEC---SSCSS-S-------------------EEEEEEEGGGHHHHHHHHHHHHHHHCCSC
T ss_pred CHHHHHHHHHHHHcCCCEEEEe---cCCCc-e-------------------EEEEEEchhhHHHHHHHHHHHHHHhhCCC
Confidence 4468999999999999887554 33311 1 34455677789999999987654310123
Q ss_pred eEEEEEec
Q 026531 201 GKIFLVPV 208 (237)
Q Consensus 201 GKIFVspV 208 (237)
..+|++..
T Consensus 337 ~~~~~~~~ 344 (350)
T 2cz9_A 337 ARHFIVEP 344 (350)
T ss_dssp CEEEEECE
T ss_pred CcEEEecC
Confidence 57777765
No 30
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=48.64 E-value=10 Score=33.64 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....+++++..+.+...| +
T Consensus 26 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G--a 103 (311)
T 3h5d_A 26 NFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFG--G 103 (311)
T ss_dssp CTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSC--C
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcC--C
Confidence 66778899999999999999998777777665443432222222222234678888899999999999998887753 4
Q ss_pred -CeEEEEEecC
Q 026531 200 -DGKIFLVPVS 209 (237)
Q Consensus 200 -DGKIFVspVe 209 (237)
||.+.+.|--
T Consensus 104 ~davlv~~P~y 114 (311)
T 3h5d_A 104 FAAGLAIVPYY 114 (311)
T ss_dssp CSEEEEECCCS
T ss_pred CcEEEEcCCCC
Confidence 8899988854
No 31
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=47.79 E-value=84 Score=23.42 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=45.0
Q ss_pred EEEEECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhc
Q 026531 115 ISGRIRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEAR 194 (237)
Q Consensus 115 IeAIIRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~ 194 (237)
|..-++|+++++|.++|.++ +|..+.-+.| .. -+|-++++.+..+++.+.|.+.-.
T Consensus 10 lvV~~~p~~~~~V~~~L~~i--pgvEi~~~~~---~~-------------------GkiVV~iEa~~~~~l~~~i~~I~~ 65 (95)
T 2jsx_A 10 LVVQAKSERISDISTQLNAF--PGCEVAVSDA---PS-------------------GQLIVVVEAEDSETLIQTIESVRN 65 (95)
T ss_dssp EEEEECTTSHHHHHHHHTTS--TTEEEEEEET---TT-------------------TEEEEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEECCCCHHHHHHHHHCC--CCeEEEEecC---CC-------------------CCEEEEEEeCCHHHHHHHHHHHhc
Confidence 45566999999999999987 5554322211 11 177888999999999998865544
Q ss_pred cCCCCCeEEEEEec
Q 026531 195 TGEIGDGKIFLVPV 208 (237)
Q Consensus 195 TGe~GDGKIFVspV 208 (237)
. +|.+=++-|
T Consensus 66 i----~GVlst~lv 75 (95)
T 2jsx_A 66 V----EGVLAVSLV 75 (95)
T ss_dssp S----TTEEEEEES
T ss_pred C----CCccEEeEE
Confidence 3 456655554
No 32
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=47.23 E-value=8.4 Score=34.08 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....++.++..+.+...|.
T Consensus 33 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Ga-- 110 (307)
T 3s5o_A 33 DYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGA-- 110 (307)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCC--
Confidence 445667788888899999999987777776654444322223222222346778888888999999999999988765
Q ss_pred CeEEEEEecC
Q 026531 200 DGKIFLVPVS 209 (237)
Q Consensus 200 DGKIFVspVe 209 (237)
||.+.+.|--
T Consensus 111 davlv~~P~y 120 (307)
T 3s5o_A 111 DAAMVVTPCY 120 (307)
T ss_dssp SEEEEECCCT
T ss_pred CEEEEcCCCc
Confidence 7888888753
No 33
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=46.51 E-value=8.3 Score=33.97 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=64.1
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccce-eEEEEEEEcCccHHHHHHHHHHHhccCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVA-KVKMEIVVSKDQVEGVIDKIMEEARTGE 197 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vp-KvkIEIVV~De~VE~VVEaI~eaa~TGe 197 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+.... ++.|.+-+.....+++++..+.+...|-
T Consensus 25 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Ga 104 (301)
T 3m5v_A 25 VDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGA 104 (301)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 466677888999999999999887766666655433332222222221233 6888889999999999999999988765
Q ss_pred CCCeEEEEEecC
Q 026531 198 IGDGKIFLVPVS 209 (237)
Q Consensus 198 ~GDGKIFVspVe 209 (237)
||.+.+.|--
T Consensus 105 --davlv~~P~y 114 (301)
T 3m5v_A 105 --DGILSVAPYY 114 (301)
T ss_dssp --SEEEEECCCS
T ss_pred --CEEEEcCCCC
Confidence 7888888853
No 34
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=46.01 E-value=7.7 Score=34.35 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+-+.-..|-+......|+-.-.+...+....++.|.+-+.....+++++..+.+...|.
T Consensus 34 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga-- 111 (304)
T 3l21_A 34 DTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGA-- 111 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC--
Confidence 455677888899999999998877777766654334322222222222346788889999999999999999988765
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 112 davlv~~P~ 120 (304)
T 3l21_A 112 HGLLVVTPY 120 (304)
T ss_dssp SEEEEECCC
T ss_pred CEEEECCCC
Confidence 788888885
No 35
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=45.92 E-value=63 Score=25.43 Aligned_cols=81 Identities=11% Similarity=0.180 Sum_probs=51.9
Q ss_pred EEEEEECCCCHHHHHHHHHh----CCCceEEE------EeeeeeccCC--CCc-ccc-----cCccceecccceeEEEEE
Q 026531 114 LISGRIRPWRVQQVSSALLN----MGIRGVTV------SDVRGFGAQG--GST-ERH-----GGSEFSEDKFVAKVKMEI 175 (237)
Q Consensus 114 lIeAIIRp~KLdeV~eAL~e----~GV~GmTV------s~VrG~Grq~--G~~-e~y-----rG~e~~vd~~vpKvkIEI 175 (237)
-|.-+|+.+..++..++|.+ .|+ .+++ ..+-|.|-.. |.. ..+ .|.++..- -....+|.+
T Consensus 61 ~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i-s~Se~~is~ 138 (167)
T 2dt9_A 61 QMAFTVKKDFAQEALEALEPVLAEIGG-EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI-ATSEVRISV 138 (167)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHCC-EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE-EECSSEEEE
T ss_pred EEEEEEehHHHHHHHHHHHHHHHHhCC-cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE-EccCCEEEE
Confidence 46677788888888888876 576 4444 6788887432 211 111 22222110 134669999
Q ss_pred EEcCccHHHHHHHHHHHhccC
Q 026531 176 VVSKDQVEGVIDKIMEEARTG 196 (237)
Q Consensus 176 VV~De~VE~VVEaI~eaa~TG 196 (237)
++++++.++.++++.+....+
T Consensus 139 vv~~~d~~~Av~~Lh~~f~~~ 159 (167)
T 2dt9_A 139 IIPAEYAEAALRAVHQAFELD 159 (167)
T ss_dssp EEEGGGHHHHHHHHHHHTC--
T ss_pred EEeHHHHHHHHHHHHHHHcCC
Confidence 999999999999999876653
No 36
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=44.70 E-value=8 Score=33.99 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....++.++..+.+...|.
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga-- 103 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGA-- 103 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCC--
Confidence 344566788889999999999887777766654333322222222212346788889999999999999999988765
Q ss_pred CeEEEEEecC
Q 026531 200 DGKIFLVPVS 209 (237)
Q Consensus 200 DGKIFVspVe 209 (237)
||.+.+.|--
T Consensus 104 davlv~~P~y 113 (297)
T 3flu_A 104 DYTLSVVPYY 113 (297)
T ss_dssp SEEEEECCCS
T ss_pred CEEEECCCCC
Confidence 7888888853
No 37
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=43.34 E-value=45 Score=26.36 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=53.8
Q ss_pred eEEEEEECCCCHHHHHHHHHhC----CCc------eEEEEeeeeeccCC--CCc-ccc-----cCccceecccceeEEEE
Q 026531 113 LLISGRIRPWRVQQVSSALLNM----GIR------GVTVSDVRGFGAQG--GST-ERH-----GGSEFSEDKFVAKVKME 174 (237)
Q Consensus 113 KlIeAIIRp~KLdeV~eAL~e~----GV~------GmTVs~VrG~Grq~--G~~-e~y-----rG~e~~vd~~vpKvkIE 174 (237)
.-|.-+|+....++..++|++. |+. ++++..+-|.|-.. |.. ..+ .|..+..- -.....+.
T Consensus 67 ~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i-stse~~is 145 (167)
T 2re1_A 67 TDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI-STSEIKVS 145 (167)
T ss_dssp EEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE-EECSSEEE
T ss_pred eEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE-EcccCEEE
Confidence 3477788888888888888865 654 46667888888432 221 111 22222110 13567899
Q ss_pred EEEcCccHHHHHHHHHHHhc
Q 026531 175 IVVSKDQVEGVIDKIMEEAR 194 (237)
Q Consensus 175 IVV~De~VE~VVEaI~eaa~ 194 (237)
+++++++.++.++++.+.-.
T Consensus 146 ~vv~~~d~~~av~~Lh~~f~ 165 (167)
T 2re1_A 146 VLIDEKYMELATRVLHKAFN 165 (167)
T ss_dssp EEEEGGGHHHHHHHHHHHTT
T ss_pred EEEeHHHHHHHHHHHHHHhc
Confidence 99999999999999987643
No 38
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=42.66 E-value=8.1 Score=34.41 Aligned_cols=87 Identities=10% Similarity=0.062 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCCC
Q 026531 121 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGD 200 (237)
Q Consensus 121 p~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~GD 200 (237)
.+.+.+..+.|.+.|+.|+-+.-..|-+......|+-.-.+...+....++.|.+-+.....++.++..+.+...|. |
T Consensus 43 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Ga--d 120 (314)
T 3qze_A 43 WDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGA--D 120 (314)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC--S
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCC--C
Confidence 34466788888899999999887777776654434322222222212346788889999999999999999988765 7
Q ss_pred eEEEEEecC
Q 026531 201 GKIFLVPVS 209 (237)
Q Consensus 201 GKIFVspVe 209 (237)
|.+.+.|--
T Consensus 121 avlv~~P~y 129 (314)
T 3qze_A 121 ACLLVTPYY 129 (314)
T ss_dssp EEEEECCCS
T ss_pred EEEEcCCCC
Confidence 888888854
No 39
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=42.65 E-value=12 Score=32.84 Aligned_cols=88 Identities=14% Similarity=0.182 Sum_probs=62.6
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....+++++..+.+...|.
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Ga- 96 (294)
T 2ehh_A 18 VDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGA- 96 (294)
T ss_dssp ECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC-
Confidence 4556678889999999999999877767666554333322222222212346788899999999999999998888764
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|-
T Consensus 97 -davlv~~P~ 105 (294)
T 2ehh_A 97 -DGALVVVPY 105 (294)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 778888874
No 40
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=41.45 E-value=6.9 Score=34.26 Aligned_cols=87 Identities=8% Similarity=0.055 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....++.++..+.+...|-
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Ga-- 97 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGA-- 97 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCC--
Confidence 455677888889999999998877777666654333322222222112346788889999999999999999888765
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 98 davlv~~P~ 106 (291)
T 3tak_A 98 DAALLVTPY 106 (291)
T ss_dssp SEEEEECCC
T ss_pred CEEEEcCCC
Confidence 788888875
No 41
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=41.27 E-value=33 Score=31.15 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=43.2
Q ss_pred hcCCCCCCccccchhcccceeEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 026531 93 LLFPFFPSPLLSSMYFFFHLLLISGRIRPWRVQQVSSALLNMGIRGVTVSDVR 145 (237)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~Vr 145 (237)
-+.|-.-+|..+..+ --...-|.++|+...+.++++.|.++|+.+..++++.
T Consensus 249 ~~lPg~~~PTVspL~-~~~wvAV~~vv~~~~~~~~~~~Lk~~GA~~Ilv~~I~ 300 (304)
T 1nh8_A 249 AITPGLESPTIAPLA-DPDWVAIRALVPRRDVNGIMDELAAIGAKAILASDIR 300 (304)
T ss_dssp HHCCCSSSCEEEECS-STTEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCS
T ss_pred HhccCCCCCeeeecC-CCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEeChh
Confidence 344878799888762 2346899999999999999999999999999998764
No 42
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=41.08 E-value=6.8 Score=35.00 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....+++++..+.+...|.
T Consensus 41 D~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Ga-- 118 (315)
T 3si9_A 41 DEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGA-- 118 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCC--
Confidence 455677888899999999998877666666554333322222222212346788889999999999999999988765
Q ss_pred CeEEEEEecC
Q 026531 200 DGKIFLVPVS 209 (237)
Q Consensus 200 DGKIFVspVe 209 (237)
||.+.+.|--
T Consensus 119 davlv~~P~y 128 (315)
T 3si9_A 119 DAVLVVTPYY 128 (315)
T ss_dssp SEEEEECCCS
T ss_pred CEEEECCCCC
Confidence 7888888853
No 43
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=40.88 E-value=7.8 Score=34.58 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....++.++..+.+...|-
T Consensus 30 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga-- 107 (318)
T 3qfe_A 30 DLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGA-- 107 (318)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCC--
Confidence 556677889999999999999987777776654444322222222212346788889999999999999999988765
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 108 davlv~~P~ 116 (318)
T 3qfe_A 108 NYVLVLPPA 116 (318)
T ss_dssp SEEEECCCC
T ss_pred CEEEEeCCc
Confidence 788888874
No 44
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=39.42 E-value=8.7 Score=34.06 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=63.1
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+-+.-..|-+......|+-.-.+...+....++.|.+-+.....++.++..+.+...|.
T Consensus 27 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Ga-- 104 (309)
T 3fkr_A 27 DLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGA-- 104 (309)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCC--
Confidence 556677888999999999999987777776654444322223222212346788888899999999999999888765
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 105 davlv~~Py 113 (309)
T 3fkr_A 105 AMVMAMPPY 113 (309)
T ss_dssp SEEEECCSC
T ss_pred CEEEEcCCC
Confidence 788888773
No 45
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=39.22 E-value=10 Score=33.59 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+.. .++.|.+-+.....+++++..+.+...|-
T Consensus 27 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-grvpViaGvg~~~t~~ai~la~~A~~~Ga-- 103 (313)
T 3dz1_A 27 DDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-KSMQVIVGVSAPGFAAMRRLARLSMDAGA-- 103 (313)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-TTSEEEEECCCSSHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-CCCcEEEecCCCCHHHHHHHHHHHHHcCC--
Confidence 445567788899999999998887777766654434322233322222 67889999999999999999999988766
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 104 davlv~~P~ 112 (313)
T 3dz1_A 104 AGVMIAPPP 112 (313)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCC
Confidence 778877775
No 46
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=38.59 E-value=12 Score=32.59 Aligned_cols=87 Identities=15% Similarity=0.149 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Ga-- 97 (291)
T 3a5f_A 20 DFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGV-- 97 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCC--
Confidence 445578899999999999999887777776654434322222222112246778899999999999999998888764
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 98 davlv~~P~ 106 (291)
T 3a5f_A 98 DGLLVITPY 106 (291)
T ss_dssp SEEEEECCC
T ss_pred CEEEEcCCC
Confidence 678888874
No 47
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=38.14 E-value=14 Score=32.28 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=62.9
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+-+.-..|-+......|+-.-.+...+....++.|.+-+.....+++++..+.+...|.
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Ga- 96 (289)
T 2yxg_A 18 VDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGA- 96 (289)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCC-
Confidence 4566788899999999999999877767666654333322222222112346788899999999999999988888764
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|-
T Consensus 97 -davlv~~P~ 105 (289)
T 2yxg_A 97 -DAVLSITPY 105 (289)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 778888875
No 48
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=38.00 E-value=12 Score=32.91 Aligned_cols=87 Identities=21% Similarity=0.153 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....++.++..+.+...|.
T Consensus 22 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Ga-- 99 (294)
T 3b4u_A 22 DIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGA-- 99 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCC--
Confidence 344577888999999999999877777766654333322222222212346778899999999999999998888764
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 100 davlv~~P~ 108 (294)
T 3b4u_A 100 RNILLAPPS 108 (294)
T ss_dssp SEEEECCCC
T ss_pred CEEEEcCCc
Confidence 678877774
No 49
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=37.98 E-value=7.2 Score=34.77 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....+++++..+.+...|.
T Consensus 43 D~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga-- 120 (315)
T 3na8_A 43 DLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGA-- 120 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC--
Confidence 445567788899999999999887777776654334322222222212346778888999999999999999988765
Q ss_pred CeEEEEEecC
Q 026531 200 DGKIFLVPVS 209 (237)
Q Consensus 200 DGKIFVspVe 209 (237)
||.+.+.|--
T Consensus 121 davlv~~P~y 130 (315)
T 3na8_A 121 EAVMVLPISY 130 (315)
T ss_dssp SEEEECCCCS
T ss_pred CEEEECCCCC
Confidence 7888887753
No 50
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=37.91 E-value=34 Score=25.92 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHH
Q 026531 124 VQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 124 LdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
.+.++++|.+.|+.-++.++....-+.+| .+ +.+..+|..+|+.....++++.=.+
T Consensus 19 ~~~l~~al~~~Gf~v~~~~d~~~~~~~~G-------~~-----~~~~~~il~~cnp~~a~~~l~~~p~ 74 (130)
T 1q9u_A 19 IERLEESLKQEGFGVLWQFSVTEKLQEKG-------LD-----FSTPMVILEVCNPQEAARVLNENLL 74 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEEHHHHHHHTT-------CC-----CCSCEEEEEEECHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHCCCEEEEEECHHHHHHhcC-------CC-----CCCCCEEEEEeCHHHHHHHHHhCHH
Confidence 34466667777888888887766555544 21 2256899999999999998776433
No 51
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=37.40 E-value=15 Score=32.40 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+-+.-..|-+......|+-.-.+...+....++.|.+-+.....++.++..+.+...|-
T Consensus 35 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Ga-- 112 (304)
T 3cpr_A 35 DIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGA-- 112 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCC--
Confidence 444577888999999999998877777766654434322222222212346788899999999999999998888764
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 113 davlv~~P~ 121 (304)
T 3cpr_A 113 DGLLVVTPY 121 (304)
T ss_dssp SEEEEECCC
T ss_pred CEEEECCCC
Confidence 678888874
No 52
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=37.38 E-value=1.2e+02 Score=25.58 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHHhccCCCCCeEEEEEecC
Q 026531 181 QVEGVIDKIMEEARTGEIGDGKIFLVPVS 209 (237)
Q Consensus 181 ~VE~VVEaI~eaa~TGe~GDGKIFVspVe 209 (237)
++++..+.|.+ -|++||.+|+-
T Consensus 73 Dv~~~~~~l~~-------aD~iv~~~P~y 94 (218)
T 3rpe_A 73 DIESEIENYLW-------ADTIIYQMPAW 94 (218)
T ss_dssp CHHHHHHHHHH-------CSEEEEEEECB
T ss_pred CHHHHHHHHHh-------CCEEEEECChH
Confidence 45555665544 37889998853
No 53
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=37.35 E-value=14 Score=34.04 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.++.+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|..-+.....+++++..+.+...|.
T Consensus 78 D~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Ga-- 155 (360)
T 4dpp_A 78 DLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGM-- 155 (360)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCC--
Confidence 445567788889999999999977667666554333322222222212346788888888999999999998888754
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 156 davlvv~Py 164 (360)
T 4dpp_A 156 HAALHINPY 164 (360)
T ss_dssp SEEEEECCC
T ss_pred CEEEEcCCC
Confidence 788888884
No 54
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=37.19 E-value=13 Score=32.58 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=63.5
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....++.++..+.+...|-
T Consensus 20 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga- 98 (292)
T 3daq_A 20 VNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGA- 98 (292)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCC-
Confidence 4667788899999999999999887777776654334322222222212346788888988999999999998888753
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|-
T Consensus 99 -davlv~~P~ 107 (292)
T 3daq_A 99 -DAIMLITPY 107 (292)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 778888874
No 55
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=37.14 E-value=13 Score=32.81 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=62.9
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....+++++..+.+...|.
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Ga- 108 (306)
T 1o5k_A 30 LDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGA- 108 (306)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCC-
Confidence 3555677888999999999999887777776654434322222222212346778899999999999999998888764
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|-
T Consensus 109 -davlv~~P~ 117 (306)
T 1o5k_A 109 -NGVLVVTPY 117 (306)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 678888874
No 56
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=37.00 E-value=13 Score=32.81 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-|.....+++++..+.+...|.
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga-- 107 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGF-- 107 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCC--
Confidence 344577888889999999999877767666554333322222222212346788889999999999999998888764
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 108 davlv~~P~ 116 (303)
T 2wkj_A 108 DAVSAVTPF 116 (303)
T ss_dssp SEEEEECCC
T ss_pred CEEEecCCC
Confidence 678888774
No 57
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=36.35 E-value=16 Score=32.00 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHh-CCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 120 RPWRVQQVSSALLN-MGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 120 Rp~KLdeV~eAL~e-~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
..+.+.+..+.|.+ .|+.|+-+.-..|-+......|+..-.+...+....++.|.+-+.....+++++..+.+...|-
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga- 100 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY- 100 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCC-
Confidence 33447788888999 9999999887777776654434322222222212346888899999999999999998888764
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|-
T Consensus 101 -davlv~~P~ 109 (293)
T 1f6k_A 101 -DCLSAVTPF 109 (293)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEECCCC
Confidence 678888874
No 58
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=35.72 E-value=23 Score=31.24 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=14.8
Q ss_pred cceeEEEEEEEcCccHHHHHHHHHH
Q 026531 167 FVAKVKMEIVVSKDQVEGVIDKIME 191 (237)
Q Consensus 167 ~vpKvkIEIVV~De~VE~VVEaI~e 191 (237)
++|+..+++ ++++.+.+.+.|-.
T Consensus 204 ~~P~~~v~l--~~e~~~~~~klid~ 226 (247)
T 4f3q_A 204 VLASTEVGL--DKDSAEQMLRLTEM 226 (247)
T ss_dssp EEESSCEEC--CHHHHHHHHHHHHH
T ss_pred EecCCcccc--CHHHHHHHHHHHHH
Confidence 677777765 66777666555533
No 59
>1osc_A Similar to divalent cation tolerant protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; 2.15A {Rattus norvegicus} SCOP: d.58.5.2
Probab=35.36 E-value=1.6e+02 Score=23.17 Aligned_cols=84 Identities=14% Similarity=0.054 Sum_probs=54.1
Q ss_pred CCCccccchhcccceeEEEEEEC-CCCHHHHHHHHHhCC-CceEEEEe-eeeeccCCCCcccccCccceecccceeEEEE
Q 026531 98 FPSPLLSSMYFFFHLLLISGRIR-PWRVQQVSSALLNMG-IRGVTVSD-VRGFGAQGGSTERHGGSEFSEDKFVAKVKME 174 (237)
Q Consensus 98 ~~~~~~~~~~~~~~MKlIeAIIR-p~KLdeV~eAL~e~G-V~GmTVs~-VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIE 174 (237)
-+||..+.-|-+..|-.+.+-.. .+..+++-++|.+.+ +.++.+.. +++.=+.+|. +. .-+.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~V~tT~p~~e~A~~iA~~Lve~rLAACvni~p~i~S~Y~W~G~--------Ie---~~~E~~l~ 77 (126)
T 1osc_A 9 QPSPASGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGK--------IE---EDSEVLMM 77 (126)
T ss_dssp ---------CCTTSEEEEEEEESSHHHHHHHHHHHHHTTSCSEEEEEEEEEEEEEETTE--------EE---EEEEEEEE
T ss_pred CcCcccccccccCceEEEEEecCCHHHHHHHHHHHHHCCeEEEEEecCCccEEEEeCCE--------Ee---EceEEEEE
Confidence 34566444344445544444444 356788999999887 45788885 8888887763 21 34568999
Q ss_pred EEEcCccHHHHHHHHHHH
Q 026531 175 IVVSKDQVEGVIDKIMEE 192 (237)
Q Consensus 175 IVV~De~VE~VVEaI~ea 192 (237)
+=+..+.++++.+.|++.
T Consensus 78 iKT~~~~~~~l~~~I~~~ 95 (126)
T 1osc_A 78 IKTQSSLVPALTEFVRSV 95 (126)
T ss_dssp EEEEGGGHHHHHHHHHTT
T ss_pred EEECHHHHHHHHHHHHHH
Confidence 999999999999999765
No 60
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=34.62 E-value=14 Score=32.47 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCCC
Q 026531 121 PWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGD 200 (237)
Q Consensus 121 p~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~GD 200 (237)
.+.+.+..+.|.+.|+.|+-+.-..|-+......|+-.-.+...+....++.|.+-+.....+++++..+.+...|. |
T Consensus 32 ~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga--d 109 (301)
T 1xky_A 32 FAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGV--D 109 (301)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTC--S
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCC--C
Confidence 34467888889999999999877767666554333322222222112346778889999999999999998888754 7
Q ss_pred eEEEEEec
Q 026531 201 GKIFLVPV 208 (237)
Q Consensus 201 GKIFVspV 208 (237)
|.+.+.|-
T Consensus 110 avlv~~P~ 117 (301)
T 1xky_A 110 AVMLVAPY 117 (301)
T ss_dssp EEEEECCC
T ss_pred EEEEcCCC
Confidence 78888884
No 61
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=33.92 E-value=13 Score=25.93 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=23.7
Q ss_pred ccceeEEEEEEEcCccHHHHHHHHHHHhc
Q 026531 166 KFVAKVKMEIVVSKDQVEGVIDKIMEEAR 194 (237)
Q Consensus 166 ~~vpKvkIEIVV~De~VE~VVEaI~eaa~ 194 (237)
+|..++.+.+.++.++++.+.+.|.+..+
T Consensus 37 ~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~ 65 (76)
T 3lh2_S 37 DVQAFVLLRVALPAAKVAEFSAKLADFSG 65 (76)
T ss_dssp EEEEEEEEEEEECC-CC-CHHHHHHHHHT
T ss_pred cccCeEEEEEEECHHHHHHHHHHHHHHhC
Confidence 36678999999999999999999988876
No 62
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=33.12 E-value=12 Score=32.70 Aligned_cols=87 Identities=10% Similarity=0.047 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-+.....+++++..+.+...|.
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Ga-- 97 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGI-- 97 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCC--
Confidence 444577888889999999999887777776654434322222222212246778888999999999999888877653
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 98 davlv~~P~ 106 (292)
T 2ojp_A 98 VGCLTVTPY 106 (292)
T ss_dssp SEEEEECCC
T ss_pred CEEEECCCC
Confidence 678888774
No 63
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=32.59 E-value=48 Score=29.85 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHhC-CCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 120 RPWRVQQVSSALLNM-GIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~-GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
....++++++++++. |+.|..++ |-|-. + .+..+++++.++++.+.+.+......-
T Consensus 343 ~~p~l~~l~~~a~~~~Ga~ga~ls---GaG~G-g-------------------~v~al~~~~~a~~~~~~l~~~~~~~~g 399 (419)
T 1pie_A 343 TGLELDTLAETAQKQAGVLGARMT---GAGFG-G-------------------CAIALVAHDNVSAFRKAVGQVYEEVVG 399 (419)
T ss_dssp CCHHHHHHHHHHHHSTTEEEEEEC---SSCSS-S-------------------EEEEEEEGGGHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCceeeEe---cCCCC-e-------------------EEEEEEchhhHHHHHHHHHHHHHHhcC
Confidence 355799999999997 98776553 33311 1 344556778899999999876542111
Q ss_pred CCeEEEEEecCcEEEc
Q 026531 199 GDGKIFLVPVSDVIRV 214 (237)
Q Consensus 199 GDGKIFVspVedaVRI 214 (237)
.+..+|++...+-.++
T Consensus 400 ~~~~~~~~~~~~Ga~v 415 (419)
T 1pie_A 400 YPASFYVAQIGSGSTK 415 (419)
T ss_dssp SCCEEEECCBCCCSBC
T ss_pred CCCeEEEEcCCCCeee
Confidence 2357787766544443
No 64
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=32.26 E-value=7.3 Score=34.36 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-|.....+++++..+.+...|.
T Consensus 23 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga-- 100 (300)
T 3eb2_A 23 RADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGA-- 100 (300)
T ss_dssp CHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCC--
Confidence 445677888899999999998876667666554333322222222112346778888999999999999999988875
Q ss_pred CeEEEEEecC
Q 026531 200 DGKIFLVPVS 209 (237)
Q Consensus 200 DGKIFVspVe 209 (237)
||.+.+.|--
T Consensus 101 davlv~~P~y 110 (300)
T 3eb2_A 101 DGILAILEAY 110 (300)
T ss_dssp SEEEEEECCS
T ss_pred CEEEEcCCCC
Confidence 7888888853
No 65
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=32.10 E-value=82 Score=29.15 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
....+|++.+++++.|+.|..++ |-|-. | .+..+|+++.++++.+++.+....
T Consensus 398 s~peld~l~~~a~~~Ga~Garlt---GAG~G-G-------------------~viaLv~~~~~~~~~~~l~~~y~~ 450 (478)
T 2a2c_A 398 SCPELDQLVDICRKFGAQGSRLT---GAGWG-G-------------------CTVSMVPADKLPSFLANVHKAYYQ 450 (478)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEC---TTCSS-S-------------------EEEEEEEGGGHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCcEEEec---cCCCc-c-------------------EEEEEEcHHHHHHHHHHHHHHHHH
Confidence 35678999999999999887764 33311 2 344566778899999999886543
No 66
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=31.00 E-value=60 Score=24.83 Aligned_cols=29 Identities=31% Similarity=0.266 Sum_probs=25.4
Q ss_pred ceeEEEEEEEcCccHHHHHHHHHHHhccC
Q 026531 168 VAKVKMEIVVSKDQVEGVIDKIMEEARTG 196 (237)
Q Consensus 168 vpKvkIEIVV~De~VE~VVEaI~eaa~TG 196 (237)
.+-.+|+++++.+.++++.+++.+++=+|
T Consensus 4 ~~mKkIeaIi~p~kl~~V~~aL~~~Gv~G 32 (111)
T 3dfe_A 4 KRANKLVIVTEKVLLKKVAKIIEEAGATG 32 (111)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHHTCSC
T ss_pred CceEEEEEEECHHHHHHHHHHHHHCCCCc
Confidence 45679999999999999999999997653
No 67
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=30.49 E-value=15 Score=33.15 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-|.....+++++..+.+...|.
T Consensus 50 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Ga-- 127 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGA-- 127 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC--
Confidence 334477888999999999999877767666554333322222222112346778899999999999999998888764
Q ss_pred CeEEEEEecC
Q 026531 200 DGKIFLVPVS 209 (237)
Q Consensus 200 DGKIFVspVe 209 (237)
||.+.+.|--
T Consensus 128 davlv~~P~Y 137 (343)
T 2v9d_A 128 DGIVVINPYY 137 (343)
T ss_dssp SEEEEECCSS
T ss_pred CEEEECCCCC
Confidence 7788888753
No 68
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=30.38 E-value=52 Score=25.58 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=28.6
Q ss_pred EEEcCccHHHHHHHHHHHhccCCCCCeEEEEEec
Q 026531 175 IVVSKDQVEGVIDKIMEEARTGEIGDGKIFLVPV 208 (237)
Q Consensus 175 IVV~De~VE~VVEaI~eaa~TGe~GDGKIFVspV 208 (237)
-+-+++..+.+.+.+.++.+.-..|||.++.+|+
T Consensus 37 d~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~Dm 70 (130)
T 3gx1_A 37 DMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDM 70 (130)
T ss_dssp EECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECS
T ss_pred EecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4456778899999998888877789999999997
No 69
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=30.25 E-value=16 Score=32.87 Aligned_cols=87 Identities=9% Similarity=0.038 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-|.....+++++..+.+...|.
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Ga-- 130 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGA-- 130 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC--
Confidence 344477888889999999999877777776654333322222222212346888899999999999999988888764
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 131 davlv~~P~ 139 (332)
T 2r8w_A 131 DALLLAPVS 139 (332)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 678877774
No 70
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=29.93 E-value=1.8e+02 Score=24.61 Aligned_cols=64 Identities=8% Similarity=0.131 Sum_probs=51.3
Q ss_pred ceeEEEEEE---CCCCHHHHHHHHHh-CCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcC-ccHHHH
Q 026531 111 HLLLISGRI---RPWRVQQVSSALLN-MGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSK-DQVEGV 185 (237)
Q Consensus 111 ~MKlIeAII---Rp~KLdeV~eAL~e-~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~D-e~VE~V 185 (237)
.+..+++=| .|+-+..+.+.|.+ +|+.....+.+... . | =|-..|.++|+. ++.+.+
T Consensus 11 ~i~vLETNIDD~tpE~lg~~~e~L~~~aGAlDV~~tPi~MK--K-n---------------RPg~~L~VLc~~~e~~e~l 72 (186)
T 3c19_A 11 HLMFLVTVLDDRDGEVLGDAIQKLIEREEVLACHAVPCVTK--K-N---------------RPGHVLVVLVDGGEDPDRV 72 (186)
T ss_dssp CEEEEEEEEETTSTTHHHHHHHHHTTSTTEEEEEEEEEEET--T-T---------------EEEEEEEEEEECTTCHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHHHhhCCCeEEEeeeceEe--C-C---------------CceEEEEEEECCcccHHHH
Confidence 355677777 78999999999999 99998888876442 1 1 123689999999 999999
Q ss_pred HHHHHHH
Q 026531 186 IDKIMEE 192 (237)
Q Consensus 186 VEaI~ea 192 (237)
.+.|.+.
T Consensus 73 ~~iif~e 79 (186)
T 3c19_A 73 AEDVARD 79 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999988
No 71
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=29.53 E-value=30 Score=30.48 Aligned_cols=34 Identities=6% Similarity=-0.106 Sum_probs=27.6
Q ss_pred ccceeEEEEEECCCCHHHHHHHHHhCCCceEEEE
Q 026531 109 FFHLLLISGRIRPWRVQQVSSALLNMGIRGVTVS 142 (237)
Q Consensus 109 ~~~MKlIeAIIRp~KLdeV~eAL~e~GV~GmTVs 142 (237)
=-+|+++..++..+..++|.++|.+.|+--+.=.
T Consensus 11 pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~ 44 (357)
T 3rrk_A 11 DDKMEKLIVAGPKRLARELLAELQKAGVVHIDPL 44 (357)
T ss_dssp ---CEEEEEEECGGGHHHHHHHHHHHTCEEEEEE
T ss_pred hhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEec
Confidence 3679999999999999999999999987655543
No 72
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=29.17 E-value=13 Score=32.39 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=62.3
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+..-.+...+....++.|.+-|.....++.++..+.+...|.
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Ga- 96 (292)
T 2vc6_A 18 IDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGA- 96 (292)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCC-
Confidence 3566788899999999999998877777666654333322222222112246778888999999999999988888764
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|-
T Consensus 97 -davlv~~P~ 105 (292)
T 2vc6_A 97 -DGVLIVSPY 105 (292)
T ss_dssp -SEEEEECCC
T ss_pred -CEEEEcCCC
Confidence 678888884
No 73
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=28.17 E-value=12 Score=33.13 Aligned_cols=87 Identities=8% Similarity=0.017 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+-+.-..|-+......|+-.-.+...+....++.|.+-+.. ..+++++..+.+...|.
T Consensus 31 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A~~~Ga-- 107 (316)
T 3e96_A 31 DWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGA-- 107 (316)
T ss_dssp CHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCC--
Confidence 456677888899999999998877777766654333322222222212346788888876 89999999999888765
Q ss_pred CeEEEEEecC
Q 026531 200 DGKIFLVPVS 209 (237)
Q Consensus 200 DGKIFVspVe 209 (237)
||.+.+.|.-
T Consensus 108 davlv~~P~y 117 (316)
T 3e96_A 108 DAVMIHMPIH 117 (316)
T ss_dssp SEEEECCCCC
T ss_pred CEEEEcCCCC
Confidence 7888887853
No 74
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=27.74 E-value=48 Score=25.20 Aligned_cols=78 Identities=17% Similarity=0.032 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCCCeEE
Q 026531 124 VQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDGKI 203 (237)
Q Consensus 124 LdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~GDGKI 203 (237)
.+.++++|.+.|+.-++.++....-+++. |.+ .+..+|..+|+.....++++.=.+++- .-|- +|
T Consensus 16 ~~~l~~al~~~Gf~v~~~id~~~~l~~k~------g~~------~~~~~il~~cnP~~a~~~l~~~p~~g~-~lPc--rv 80 (129)
T 1j3m_A 16 RAQVEAALKEEGFGILTEIDVAATLKAKL------GLE------KPPYLILGACNPNLAARALEALPEIGL-LLPC--NV 80 (129)
T ss_dssp HHHHHHHHHHTTCEEEEEEEHHHHHHHHH------CCC------CCCEEEEEEECHHHHHHHHHHCGGGGG-GCSE--EE
T ss_pred HHHHHHHHHHCCCEEEEEeCHHHHHHHhc------CCC------CCCeEEEEECCHHHHHHHHHhCHHHHh-hcCc--EE
Confidence 45567777777888888887765422221 111 356899999999999888775433322 2232 44
Q ss_pred EEEecCcEEEccc
Q 026531 204 FLVPVSDVIRVRT 216 (237)
Q Consensus 204 FVspVedaVRIRT 216 (237)
.|..-++-+.|.+
T Consensus 81 ~V~e~~~~v~v~~ 93 (129)
T 1j3m_A 81 VLREAEEGVEVLI 93 (129)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEEEeCCeEEEEE
Confidence 4444444444443
No 75
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=27.55 E-value=57 Score=24.28 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=22.5
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 171 VKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.+|+.+++.++++++.+++.+++-+
T Consensus 2 k~I~aII~~~~~~~v~~aL~~~G~~ 26 (112)
T 1hwu_A 2 KQVTAIIKPFKLDEVRESLAEVGVT 26 (112)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 4799999999999999999998665
No 76
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=27.09 E-value=59 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.4
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 171 VKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.+|+.++++++++++.+++.+++-+
T Consensus 2 k~I~aII~~~~~~~v~~aL~~~G~~ 26 (112)
T 2eg2_A 2 KKIEAIIKPFKLDEVKDALVEIGIG 26 (112)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 4799999999999999999998665
No 77
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=26.98 E-value=2e+02 Score=26.10 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=53.7
Q ss_pred EEEEEECCCCHHHHHHHHHhC----CCceEEE------EeeeeeccCC--CCcc-cc-----cCccceecccceeEEEEE
Q 026531 114 LISGRIRPWRVQQVSSALLNM----GIRGVTV------SDVRGFGAQG--GSTE-RH-----GGSEFSEDKFVAKVKMEI 175 (237)
Q Consensus 114 lIeAIIRp~KLdeV~eAL~e~----GV~GmTV------s~VrG~Grq~--G~~e-~y-----rG~e~~vd~~vpKvkIEI 175 (237)
-|.-+|+.+..++..+.|++. |+..+++ ..+-|.|-.. |... .| .|.++..- -....+|.+
T Consensus 309 ~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i-s~Se~~is~ 387 (421)
T 3ab4_A 309 DITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI-STSEIRISV 387 (421)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE-EEETTEEEE
T ss_pred eEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE-EcCCCeEEE
Confidence 466777888877777777753 7644444 7888887543 2211 11 12222110 134789999
Q ss_pred EEcCccHHHHHHHHHHHhccC
Q 026531 176 VVSKDQVEGVIDKIMEEARTG 196 (237)
Q Consensus 176 VV~De~VE~VVEaI~eaa~TG 196 (237)
++++++.++.++++.+....+
T Consensus 388 vV~~~d~~~Av~~Lh~~f~~~ 408 (421)
T 3ab4_A 388 LIREDDLDAAARALHEQFQLG 408 (421)
T ss_dssp EEEGGGHHHHHHHHHHHTTCC
T ss_pred EEeHHHHHHHHHHHHHHHhcC
Confidence 999999999999999987653
No 78
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=26.91 E-value=16 Score=32.44 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+-+.-..|-+......|+..-.+...+....++.|.+-+.. ..++.++..+.+...|.
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Ga-- 107 (314)
T 3d0c_A 31 DWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGA-- 107 (314)
T ss_dssp CHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCC--
Confidence 334477888999999999988876666666554333322222222212347889999999 99999999998888764
Q ss_pred CeEEEEEec
Q 026531 200 DGKIFLVPV 208 (237)
Q Consensus 200 DGKIFVspV 208 (237)
||.+.+.|-
T Consensus 108 davlv~~P~ 116 (314)
T 3d0c_A 108 DCVMIHQPV 116 (314)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 678877774
No 79
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=26.89 E-value=61 Score=24.49 Aligned_cols=25 Identities=4% Similarity=0.034 Sum_probs=22.4
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 171 VKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.+|+.+++.++++++.+++.+++-.
T Consensus 2 K~I~aIIr~~kl~~vk~AL~~~G~~ 26 (112)
T 3mhy_A 2 KLVMAIIKPFKLDEVREALTSLGIQ 26 (112)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 4799999999999999999998654
No 80
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=26.53 E-value=61 Score=24.20 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=22.5
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 171 VKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.+|++++++++++++.+++.+++-+
T Consensus 4 k~I~aIIr~~~~~~v~~aL~~~G~~ 28 (114)
T 3bzq_A 4 KLITAIVKPFTLDDVKTSLEDAGVL 28 (114)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 5899999999999999999998665
No 81
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=26.39 E-value=14 Score=32.48 Aligned_cols=88 Identities=8% Similarity=0.080 Sum_probs=62.0
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+...+....++.|.+-|.....++.++..+.+...|.
T Consensus 18 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Ga- 96 (297)
T 2rfg_A 18 VDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGA- 96 (297)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCC-
Confidence 3566788899999999999998877777666554333322222222112246778888999999999999988888764
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|-
T Consensus 97 -davlv~~P~ 105 (297)
T 2rfg_A 97 -DAVLCVAGY 105 (297)
T ss_dssp -SEEEECCCT
T ss_pred -CEEEEcCCC
Confidence 678777774
No 82
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=26.38 E-value=61 Score=24.44 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=23.3
Q ss_pred eEEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 170 KVKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 170 KvkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
-.+|++++++++++++.+++.+++-+
T Consensus 5 Mk~I~aIIr~~~~~~v~~AL~~~G~~ 30 (116)
T 2ns1_B 5 MKLVTVIIKPFKLEDVREALSSIGIQ 30 (116)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred eEEEEEEECHHHHHHHHHHHHHCCCC
Confidence 46899999999999999999998665
No 83
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=25.90 E-value=64 Score=24.22 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.6
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 171 VKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.+|+++++.++++++.+++.+++-+
T Consensus 4 k~I~aII~~~~~~~v~~aL~~~G~~ 28 (114)
T 2gw8_A 4 KKIEAIVKPFKLDDVREALTEIGIT 28 (114)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 5899999999999999999998665
No 84
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=25.90 E-value=3e+02 Score=23.23 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=17.3
Q ss_pred CccHHHHHHHHHHHhccCCCCCeEEEEEecC
Q 026531 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPVS 209 (237)
Q Consensus 179 De~VE~VVEaI~eaa~TGe~GDGKIFVspVe 209 (237)
++.++++.+.|.++ ||.||++|+-
T Consensus 86 ~d~~~~l~~~i~~A-------D~iI~~sP~Y 109 (247)
T 2q62_A 86 HPKVQELRELSIWS-------EGQVWVSPER 109 (247)
T ss_dssp SHHHHHHHHHHHHC-------SEEEEEEECS
T ss_pred CHHHHHHHHHHHHC-------CEEEEEeCCC
Confidence 45577777766554 7999999964
No 85
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=25.86 E-value=63 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.3
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 171 VKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.+|+++++.+.++++.+++.+++-+
T Consensus 4 k~I~aII~~~~~~~v~~aL~~~G~~ 28 (119)
T 2j9c_A 4 KKVEAIIRPEKLEIVKKALSDAGYV 28 (119)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCC
Confidence 5899999999999999999998654
No 86
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=25.66 E-value=64 Score=24.20 Aligned_cols=25 Identities=8% Similarity=0.242 Sum_probs=22.2
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 171 VKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.+|++++++++++++.+++.+++-+
T Consensus 2 k~I~aII~~~~~~~V~~aL~~~G~~ 26 (116)
T 1vfj_A 2 KLIVAIVRPEKLNEVLKALFQAEVR 26 (116)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred EEEEEEECHHHHHHHHHHHHhCCCC
Confidence 4799999999999999999998554
No 87
>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A
Probab=25.34 E-value=83 Score=25.76 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHH
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEG 184 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~ 184 (237)
...|.+.|++.|.+.|++.-.+..+.|+|...-.... .. .....-+|||++..+..+.
T Consensus 117 S~~RA~aV~~~L~~~Gi~~~ri~~~~G~G~~~P~~~n---~t----~r~~NRRVeI~i~~~~~~~ 174 (183)
T 2zvy_A 117 SADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDR---GP----DDAINRRISLLVLNKQAEQ 174 (183)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEEECTTTTCSSCS---ST----TGGGGSEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHhheeEEecccCcCCCC---CC----cchhcCcEEEEEeccchhh
Confidence 3558889999999999998777788899976432110 11 1234568888887655443
No 88
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=25.19 E-value=47 Score=28.95 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+-+.-..|-+......|+-.-.+... +.... |.+-+.....++.++..+.+...|-
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~-~~~~g--viaGvg~~~t~~ai~la~~A~~~Ga-- 92 (293)
T 1w3i_A 18 DKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVY-DVTNK--IIFQVGGLNLDDAIRLAKLSKDFDI-- 92 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHH-TTCSC--EEEECCCSCHHHHHHHHHHGGGSCC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHH-HHcCC--EEEecCCCCHHHHHHHHHHHHhcCC--
Confidence 445577888999999999999877767666654333322222222 23333 7788888899999999988888764
Q ss_pred CeEEEEEecC
Q 026531 200 DGKIFLVPVS 209 (237)
Q Consensus 200 DGKIFVspVe 209 (237)
||.+.+.|--
T Consensus 93 davlv~~P~y 102 (293)
T 1w3i_A 93 VGIASYAPYY 102 (293)
T ss_dssp SEEEEECCCS
T ss_pred CEEEEcCCCC
Confidence 7788888753
No 89
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=24.70 E-value=2.5e+02 Score=22.22 Aligned_cols=80 Identities=11% Similarity=0.112 Sum_probs=51.5
Q ss_pred EEEEECCCCHHHHHHHHHh----CCCceEEEE------eeeeeccCCCC--c-ccc-----cCccceecccceeEEEEEE
Q 026531 115 ISGRIRPWRVQQVSSALLN----MGIRGVTVS------DVRGFGAQGGS--T-ERH-----GGSEFSEDKFVAKVKMEIV 176 (237)
Q Consensus 115 IeAIIRp~KLdeV~eAL~e----~GV~GmTVs------~VrG~Grq~G~--~-e~y-----rG~e~~vd~~vpKvkIEIV 176 (237)
|...+.....++..++|.+ .|+..+++. .+-|.|-.... . ..| .|.++..- -.....|.++
T Consensus 61 isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i-stSe~~Is~v 139 (178)
T 2dtj_A 61 ITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI-STSEIRISVL 139 (178)
T ss_dssp EEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE-EEETTEEEEE
T ss_pred EEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE-EcCCCeEEEE
Confidence 4455566677777888876 466655555 88888765321 1 111 12222110 1345789999
Q ss_pred EcCccHHHHHHHHHHHhcc
Q 026531 177 VSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 177 V~De~VE~VVEaI~eaa~T 195 (237)
|++++.++.++++.+.-..
T Consensus 140 V~~~d~~~Av~~Lh~~F~l 158 (178)
T 2dtj_A 140 IREDDLDAAARALHEQFQL 158 (178)
T ss_dssp EEGGGHHHHHHHHHHHHTC
T ss_pred EeHHHHHHHHHHHHHHHcc
Confidence 9999999999999998765
No 90
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=24.14 E-value=64 Score=24.72 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.4
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 171 VKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.+|+.++++++++++.+++.+++-+
T Consensus 2 K~I~AIIrp~kl~~vk~AL~~~G~~ 26 (116)
T 4aff_A 2 KKIEAIIRPFKLDEVKIALVNAGIV 26 (116)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred eEEEEEECHHHHHHHHHHHHHCCCC
Confidence 4799999999999999999998665
No 91
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=24.08 E-value=84 Score=24.07 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=25.6
Q ss_pred cCccHHHHHHHHHHHhccCCCCCeEEEEEec
Q 026531 178 SKDQVEGVIDKIMEEARTGEIGDGKIFLVPV 208 (237)
Q Consensus 178 ~De~VE~VVEaI~eaa~TGe~GDGKIFVspV 208 (237)
+++..+.+.+.|.++.+.-..|||.++.+|+
T Consensus 37 ~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl 67 (135)
T 1pdo_A 37 PGENAETLIEKYNAQLAKLDTTKGVLFLVDT 67 (135)
T ss_dssp TTCCHHHHHHHHHHHHTTSCCTTCEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 4667788888888888877778999999997
No 92
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=24.06 E-value=66 Score=24.86 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.2
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 171 VKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.+|+.++++++++++.+++.+++-+
T Consensus 2 K~I~AIIrp~kl~~Vk~AL~~~G~~ 26 (119)
T 3ncq_A 2 KKIEAIVRAEKFPEVKAALEERGFY 26 (119)
T ss_dssp EEEEEEECTTTHHHHHHHHHHTTCC
T ss_pred eEEEEEECHHHHHHHHHHHHHCCCC
Confidence 4799999999999999999998654
No 93
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=24.06 E-value=43 Score=29.11 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCCC
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIG 199 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~G 199 (237)
..+.+.+..+.|.+.|+.|+-+.-..|-+......|+-.-.+... +.... |.+-+.....++.++..+.+...|.
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~-~~~~g--ViaGvg~~~t~~ai~la~~A~~~Ga-- 92 (288)
T 2nuw_A 18 NVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALY-DVTHK--LIFQVGSLNLNDVMELVKFSNEMDI-- 92 (288)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHT-TTCSC--EEEECCCSCHHHHHHHHHHHHTSCC--
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHH-HHhCC--eEEeeCCCCHHHHHHHHHHHHhcCC--
Confidence 445577888999999999998877767666654333322222222 23333 7788888899999999998888764
Q ss_pred CeEEEEEecC
Q 026531 200 DGKIFLVPVS 209 (237)
Q Consensus 200 DGKIFVspVe 209 (237)
||.+.+.|--
T Consensus 93 davlv~~P~y 102 (288)
T 2nuw_A 93 LGVSSHSPYY 102 (288)
T ss_dssp SEEEECCCCS
T ss_pred CEEEEcCCcC
Confidence 6788887753
No 94
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=23.09 E-value=69 Score=24.71 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.4
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 171 VKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.+|+.++++++++++.+++.+++-+
T Consensus 2 K~I~AIIrp~kl~~Vk~AL~~~G~~ 26 (118)
T 3t9z_A 2 KMVVAVIRPEKLECVKKALEERGFV 26 (118)
T ss_dssp EEEEEEECGGGHHHHHHHHHHTTCC
T ss_pred eEEEEEECHHHHHHHHHHHHHCCCc
Confidence 4799999999999999999998655
No 95
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=22.49 E-value=37 Score=29.48 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=59.6
Q ss_pred ECCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHHHHHHhccCCC
Q 026531 119 IRPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEI 198 (237)
Q Consensus 119 IRp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEaI~eaa~TGe~ 198 (237)
|..+.+.+..+.|.+.|+.|+.+.-..|-+......|+-.-.+... +.... |.+-+.....+++++..+.+...|.
T Consensus 16 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~-~~~~g--vi~Gvg~~~t~~ai~la~~A~~~Ga- 91 (286)
T 2r91_A 16 LDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAAT-SAARR--VIVQVASLNADEAIALAKYAESRGA- 91 (286)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHH-HHCSS--EEEECCCSSHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHH-HHhCC--EEEeeCCCCHHHHHHHHHHHHhcCC-
Confidence 4566678889999999999999876666666554333322222222 12333 7788888899999999998888764
Q ss_pred CCeEEEEEec
Q 026531 199 GDGKIFLVPV 208 (237)
Q Consensus 199 GDGKIFVspV 208 (237)
||.+.+.|-
T Consensus 92 -davlv~~P~ 100 (286)
T 2r91_A 92 -EAVASLPPY 100 (286)
T ss_dssp -SEEEECCSC
T ss_pred -CEEEEcCCc
Confidence 678877774
No 96
>2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium}
Probab=22.28 E-value=1e+02 Score=25.88 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHH
Q 026531 120 RPWRVQQVSSALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVID 187 (237)
Q Consensus 120 Rp~KLdeV~eAL~e~GV~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVE 187 (237)
...|...|++.|.+.|++.-.+..+.|+|...-... ... .....-+|||++.....+..+.
T Consensus 128 S~~RA~aV~~~L~~~Gv~~~ri~~~~G~G~~~Pi~~---n~~----~ra~NRRVeI~i~~~~~~~~~~ 188 (210)
T 2zov_A 128 SADRANASRRELVAGGLDNGKVLRVVGMAATMRLSD---RGP----DDAINRRISLLVLNKQAEQAIL 188 (210)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEEEECCC----------------CCCEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHeeeEEEecccCcCCC---CCC----ccccCCcEEEEEecCchhhhhh
Confidence 345788999999999999877778889997643211 001 1345678999888777776654
No 97
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=21.85 E-value=1.7e+02 Score=22.63 Aligned_cols=81 Identities=10% Similarity=0.090 Sum_probs=47.8
Q ss_pred EEEEEECCCC-HHHHHHHHHhCC----CceEEEEeeeeeccCC--CCc-ccccCc-cceeccc----ceeEEEEEEEcCc
Q 026531 114 LISGRIRPWR-VQQVSSALLNMG----IRGVTVSDVRGFGAQG--GST-ERHGGS-EFSEDKF----VAKVKMEIVVSKD 180 (237)
Q Consensus 114 lIeAIIRp~K-LdeV~eAL~e~G----V~GmTVs~VrG~Grq~--G~~-e~yrG~-e~~vd~~----vpKvkIEIVV~De 180 (237)
.|...|+... ++++.++|.+.+ ..++++..+-|.|-.. |.. ..|... .+.+ .+ .....|.++++++
T Consensus 58 ~Isf~v~~~~~~~~il~~l~~~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~~Ini-~~isqg~Se~~is~vv~~~ 136 (157)
T 3mah_A 58 GVSLTIDNDKNLPDIVRALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARIINALKGVPV-RMISYGGSNYNVSVLVKAE 136 (157)
T ss_dssp EEEEEESCCTTHHHHHHHHTTTEEEEEEEEEEEEEEEC------CCHHHHHHHTTTTSCC-SEEEECSSSSCEEEEEEGG
T ss_pred EEEEEECChHHHHHHHHHHhccCeEEEeCCeEEEEEECCCcccCccHHHHHHHHhCCCCe-EEEeeCCCCCEEEEEEcHH
Confidence 5777776665 777777776521 1356666777777542 221 112111 1111 12 3467899999999
Q ss_pred cHHHHHHHHHHHhcc
Q 026531 181 QVEGVIDKIMEEART 195 (237)
Q Consensus 181 ~VE~VVEaI~eaa~T 195 (237)
+.+++++++.+....
T Consensus 137 d~~~a~~~Lh~~f~~ 151 (157)
T 3mah_A 137 DKKKALIALSNKLFN 151 (157)
T ss_dssp GHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987654
No 98
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=20.87 E-value=1.4e+02 Score=20.47 Aligned_cols=35 Identities=14% Similarity=-0.181 Sum_probs=27.5
Q ss_pred hcccc---eeEEEEEECCCCHHHHHHHHHhCCCceEEE
Q 026531 107 YFFFH---LLLISGRIRPWRVQQVSSALLNMGIRGVTV 141 (237)
Q Consensus 107 ~~~~~---MKlIeAIIRp~KLdeV~eAL~e~GV~GmTV 141 (237)
||..+ =..+...|.|++++++.+.|.+.|+.--.+
T Consensus 38 fW~~~~~~~~~vdI~V~p~~~~~f~~~L~~~~I~y~Vl 75 (78)
T 2gjf_A 38 WQNPPTEPGQPVVILIPSDMVEWFLEMLKAKGIPFTVY 75 (78)
T ss_dssp ESSCTTSTTCCEEEEECTTSHHHHHHHHHHHTCCEEEE
T ss_pred eeCCCCCCCCeEEEEECHHHHHHHHHHHHHCCCcEEEE
Confidence 66533 246789999999999999999999876443
No 99
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=20.75 E-value=4.2e+02 Score=23.07 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=16.7
Q ss_pred CccHHHHHHHHHHHhccCCCCCeEEEEEec
Q 026531 179 KDQVEGVIDKIMEEARTGEIGDGKIFLVPV 208 (237)
Q Consensus 179 De~VE~VVEaI~eaa~TGe~GDGKIFVspV 208 (237)
++.++++.+.|.++ ||.||++|+
T Consensus 111 ~d~v~~l~e~I~~A-------DgiV~aSP~ 133 (279)
T 2fzv_A 111 HPAVKELRALSEWS-------EGQVWCSPE 133 (279)
T ss_dssp CHHHHHHHHHHHHC-------SEEEEEEEE
T ss_pred CHHHHHHHHHHHHC-------CeEEEEcCc
Confidence 45667777766554 799999995
No 100
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Probab=20.75 E-value=1.1e+02 Score=28.65 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=35.4
Q ss_pred cchhcccce-eEEEEEECCCCHHHHHHHHHhCCCceEEEEeee
Q 026531 104 SSMYFFFHL-LLISGRIRPWRVQQVSSALLNMGIRGVTVSDVR 145 (237)
Q Consensus 104 ~~~~~~~~M-KlIeAIIRp~KLdeV~eAL~e~GV~GmTVs~Vr 145 (237)
.|||--|.| --..++|+++..+++.++|++.|.....+=+|.
T Consensus 329 ~EM~rtFNmGiGmVlvV~~e~a~~vl~~l~~~G~~A~iIG~V~ 371 (389)
T 3mdo_A 329 SEMYKVFNMGHRMEIYIAPEHAEEVIGISKSFGIDAQIVGFVE 371 (389)
T ss_dssp HHHHHHSCTTEEEEEEECGGGHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHhccCcceEEEEECHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence 367777788 358889999999999999999999888877774
No 101
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=20.30 E-value=1.1e+02 Score=23.58 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=24.1
Q ss_pred ceeEEEEEEEcCccHHHHHHHHHHHhcc
Q 026531 168 VAKVKMEIVVSKDQVEGVIDKIMEEART 195 (237)
Q Consensus 168 vpKvkIEIVV~De~VE~VVEaI~eaa~T 195 (237)
.+-.+|+++++.+..+++.+++.+++-+
T Consensus 23 ~~mK~I~aIIr~~k~e~V~~aL~~~Gi~ 50 (119)
T 2cz4_A 23 VPLKLVTIVAESLLEKRLVEEVKRLGAK 50 (119)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCC
Confidence 3456899999999999999999988655
No 102
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=20.18 E-value=83 Score=24.04 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=22.2
Q ss_pred EEEEEEEcCccHHHHHHHHHHHhc
Q 026531 171 VKMEIVVSKDQVEGVIDKIMEEAR 194 (237)
Q Consensus 171 vkIEIVV~De~VE~VVEaI~eaa~ 194 (237)
.+|+.+++.++++++.+++.+++-
T Consensus 4 KkI~AIIrp~kl~~Vk~AL~~~G~ 27 (115)
T 3l7p_A 4 KKIEAIIRSDKLEDLKAALVQSGF 27 (115)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHTC
T ss_pred EEEEEEECHHHHHHHHHHHHHCCC
Confidence 589999999999999999999866
No 103
>1kr4_A Protein TM1056, CUTA; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.40A {Thermotoga maritima} SCOP: d.58.5.2
Probab=20.15 E-value=3.2e+02 Score=21.47 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=57.2
Q ss_pred ceeEEEEEEC-CCCHHHHHHHHHhCC-CceEEEEeeeeeccCCCCcccccCccceecccceeEEEEEEEcCccHHHHHHH
Q 026531 111 HLLLISGRIR-PWRVQQVSSALLNMG-IRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDK 188 (237)
Q Consensus 111 ~MKlIeAIIR-p~KLdeV~eAL~e~G-V~GmTVs~VrG~Grq~G~~e~yrG~e~~vd~~vpKvkIEIVV~De~VE~VVEa 188 (237)
.|-.+.+-.. .+...++-++|.+.+ +.++.+..++..=+.+|. +. .-+.+.+.+=+..+.++++.+.
T Consensus 22 ~~~lV~tT~p~~e~A~~iA~~Lve~rLAACVni~pi~S~Y~W~G~--------Ie---~~~E~~l~iKT~~~~~~~L~~~ 90 (125)
T 1kr4_A 22 HMILVYSTFPNEEKALEIGRKLLEKRLIACFNAFEIRSGYWWKGE--------IV---QDKEWAAIFKTTEEKEKELYEE 90 (125)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHHHTTSCSEEEEEEEEEEEEETTE--------EE---EEEEEEEEEEEEGGGHHHHHHH
T ss_pred ccEEEEEecCCHHHHHHHHHHHHhcCeEEEEEeccceEEEEeCCE--------Ee---EceEEEEEEEECHHHHHHHHHH
Confidence 3433333333 344667888888876 567888888887777662 21 3456889999999999999999
Q ss_pred HHHHhccCCCCCeEEEEEecCc
Q 026531 189 IMEEARTGEIGDGKIFLVPVSD 210 (237)
Q Consensus 189 I~eaa~TGe~GDGKIFVspVed 210 (237)
|++.=-=.-|- |...||++
T Consensus 91 I~e~HpYevPe---Ii~lpi~~ 109 (125)
T 1kr4_A 91 LRKLHPYETPA---IFTLKVEN 109 (125)
T ss_dssp HHHHCSSSSCC---EEEECCCC
T ss_pred HHHHCCCcCCE---EEEEEccC
Confidence 97763323332 55666654
Done!