Query 026532
Match_columns 237
No_of_seqs 97 out of 106
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:15:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03098 LPA1 LOW PSII ACCUMUL 100.0 6.4E-78 1.4E-82 572.8 23.3 230 1-230 201-453 (453)
2 PF11998 DUF3493: Protein of u 99.7 1E-18 2.3E-23 131.4 4.5 54 1-61 22-75 (75)
3 PF13778 DUF4174: Domain of un 96.1 0.072 1.6E-06 42.8 9.7 104 90-218 2-108 (118)
4 PRK03147 thiol-disulfide oxido 94.3 1.4 3.1E-05 35.7 12.4 133 70-219 35-169 (173)
5 cd03017 PRX_BCP Peroxiredoxin 94.1 0.84 1.8E-05 35.7 10.2 124 79-218 6-139 (140)
6 PF08534 Redoxin: Redoxin; In 94.0 0.82 1.8E-05 36.2 10.1 117 78-210 8-136 (146)
7 PRK09437 bcp thioredoxin-depen 93.8 1.3 2.7E-05 35.7 11.0 124 74-213 8-144 (154)
8 cd03018 PRX_AhpE_like Peroxire 92.5 2.2 4.8E-05 33.7 10.4 117 78-209 9-134 (149)
9 cd02968 SCO SCO (an acronym fo 90.4 4.1 8.8E-05 31.8 9.8 118 81-204 7-139 (142)
10 PTZ00056 glutathione peroxidas 89.0 8.3 0.00018 33.3 11.4 143 75-219 18-175 (199)
11 cd02964 TryX_like_family Trypa 88.7 8.7 0.00019 30.2 10.6 110 83-206 4-117 (132)
12 PLN02412 probable glutathione 87.5 12 0.00027 31.1 11.2 138 77-218 10-160 (167)
13 cd02971 PRX_family Peroxiredox 87.2 9.1 0.0002 29.6 9.7 110 85-210 11-131 (140)
14 cd03015 PRX_Typ2cys Peroxiredo 86.2 15 0.00034 30.3 11.1 117 87-219 20-154 (173)
15 PTZ00256 glutathione peroxidas 85.2 21 0.00046 30.0 11.7 143 72-218 16-177 (183)
16 cd03012 TlpA_like_DipZ_like Tl 84.5 11 0.00024 29.3 8.9 111 86-207 13-124 (126)
17 PRK10606 btuE putative glutath 81.2 14 0.00031 31.8 9.1 58 78-136 7-65 (183)
18 cd03014 PRX_Atyp2cys Peroxired 77.7 32 0.00069 27.0 9.6 113 84-212 14-133 (143)
19 TIGR02540 gpx7 putative glutat 77.2 37 0.00079 27.4 11.4 129 80-219 6-150 (153)
20 PF06305 DUF1049: Protein of u 77.0 5.2 0.00011 28.3 4.3 17 57-73 47-63 (68)
21 cd00340 GSH_Peroxidase Glutath 76.7 38 0.00082 27.3 11.8 126 85-216 11-150 (152)
22 cd02970 PRX_like2 Peroxiredoxi 74.2 28 0.00061 27.0 8.3 53 85-137 11-66 (149)
23 PF02630 SCO1-SenC: SCO1/SenC; 69.7 65 0.0014 27.0 10.0 124 72-204 28-170 (174)
24 cd03009 TryX_like_TryX_NRX Try 69.2 51 0.0011 25.5 10.5 107 85-205 7-116 (131)
25 PF00255 GSHPx: Glutathione pe 67.3 32 0.0007 27.4 7.2 57 79-136 4-61 (108)
26 PRK13728 conjugal transfer pro 67.0 53 0.0011 28.6 9.1 105 83-218 60-167 (181)
27 TIGR01626 ytfJ_HI0045 conserve 65.6 11 0.00023 32.9 4.5 116 86-216 49-174 (184)
28 PF00578 AhpC-TSA: AhpC/TSA fa 64.7 48 0.001 24.9 7.6 102 85-203 14-123 (124)
29 cd02966 TlpA_like_family TlpA- 61.1 57 0.0012 23.1 9.0 104 85-204 8-113 (116)
30 PF10066 DUF2304: Uncharacteri 61.0 32 0.00069 27.3 6.1 54 19-77 52-105 (115)
31 COG0641 AslB Arylsulfatase reg 60.7 8.4 0.00018 37.0 3.2 77 132-221 58-151 (378)
32 TIGR00739 yajC preprotein tran 59.6 12 0.00027 28.5 3.4 47 47-93 11-59 (84)
33 PRK15412 thiol:disulfide inter 59.2 1.1E+02 0.0023 25.7 10.7 116 86-219 57-173 (185)
34 PRK05585 yajC preprotein trans 57.2 19 0.00041 28.8 4.2 46 48-93 27-74 (106)
35 cd02967 mauD Methylamine utili 52.7 94 0.002 23.1 9.4 107 80-206 4-113 (114)
36 PF10960 DUF2762: Protein of u 52.3 21 0.00045 26.7 3.5 35 41-77 8-45 (71)
37 COG1225 Bcp Peroxiredoxin [Pos 50.9 34 0.00074 29.3 5.0 103 85-204 19-135 (157)
38 PRK05886 yajC preprotein trans 49.5 32 0.00068 27.8 4.3 46 47-92 12-59 (109)
39 TIGR03141 cytochro_ccmD heme e 48.6 37 0.0008 22.9 4.0 33 41-73 11-43 (45)
40 COG0811 TolQ Biopolymer transp 46.0 81 0.0018 27.8 6.8 63 9-71 128-199 (216)
41 PF04995 CcmD: Heme exporter p 44.8 50 0.0011 22.3 4.2 35 40-74 9-43 (46)
42 PRK06280 hypothetical protein; 44.8 45 0.00098 25.2 4.3 46 5-58 25-71 (77)
43 PF01618 MotA_ExbB: MotA/TolQ/ 43.7 86 0.0019 25.3 6.2 18 11-28 69-86 (139)
44 smart00392 PROF Profilin. Bind 43.5 38 0.00082 27.3 4.0 34 171-207 2-35 (129)
45 PRK00522 tpx lipid hydroperoxi 43.4 1.9E+02 0.0041 23.9 9.7 109 84-209 32-151 (167)
46 cd02969 PRX_like1 Peroxiredoxi 39.9 2E+02 0.0044 23.3 11.4 116 81-205 9-126 (171)
47 PTZ00316 profilin; Provisional 37.3 23 0.0005 30.3 1.9 35 171-208 2-37 (150)
48 PF02699 YajC: Preprotein tran 36.2 36 0.00079 25.7 2.7 26 44-69 7-32 (82)
49 PF03210 Paramyx_P_V_C: Paramy 36.0 12 0.00026 31.8 0.0 56 71-126 33-91 (155)
50 PTZ00253 tryparedoxin peroxida 34.3 99 0.0021 26.3 5.4 53 85-138 25-80 (199)
51 PRK06531 yajC preprotein trans 29.6 77 0.0017 25.7 3.7 39 54-92 17-57 (113)
52 PLN02399 phospholipid hydroper 29.5 4.2E+02 0.0091 23.8 12.4 142 73-219 76-231 (236)
53 PTZ00127 cytochrome c oxidase 29.3 19 0.00042 34.8 0.2 21 200-221 87-107 (403)
54 PF00235 Profilin: Profilin; 28.5 37 0.0008 26.5 1.6 35 171-208 1-35 (121)
55 COG4365 Uncharacterized protei 27.8 93 0.002 31.2 4.5 84 53-136 26-128 (537)
56 COG0493 GltD NADPH-dependent g 26.8 3.1E+02 0.0066 27.1 8.0 129 79-214 188-353 (457)
57 PF01820 Dala_Dala_lig_N: D-al 26.0 1.1E+02 0.0025 24.1 4.1 41 99-139 2-43 (117)
58 PHA02108 hypothetical protein 25.8 41 0.0009 23.1 1.3 20 39-58 3-22 (48)
59 COG4794 EscS Type III secretor 24.3 1.6E+02 0.0036 23.1 4.5 42 7-57 25-66 (89)
60 PF13905 Thioredoxin_8: Thiore 24.1 2.7E+02 0.0059 19.8 10.7 81 108-201 14-95 (95)
61 TIGR01205 D_ala_D_alaTIGR D-al 24.0 66 0.0014 28.7 2.6 40 99-138 1-41 (315)
62 TIGR00385 dsbE periplasmic pro 23.4 64 0.0014 26.7 2.3 30 189-218 138-167 (173)
63 PF13244 DUF4040: Domain of un 23.3 1.7E+02 0.0038 21.4 4.3 44 5-56 19-63 (70)
64 PF10011 DUF2254: Predicted me 23.2 2.4E+02 0.0052 26.8 6.3 61 8-69 97-157 (371)
65 PF10686 DUF2493: Protein of u 23.1 2.6E+02 0.0057 20.5 5.2 38 98-138 3-40 (71)
66 PRK01222 N-(5'-phosphoribosyl) 21.9 82 0.0018 27.5 2.7 36 85-120 140-178 (210)
67 TIGR03137 AhpC peroxiredoxin. 21.8 1.8E+02 0.0039 24.5 4.8 116 87-217 22-151 (187)
68 cd03008 TryX_like_RdCVF Trypar 21.8 4.7E+02 0.01 21.7 10.5 105 87-205 16-129 (146)
69 PRK15083 PTS system mannitol-s 21.5 3.1E+02 0.0068 28.1 7.2 18 90-107 371-388 (639)
70 PLN02919 haloacid dehalogenase 21.4 5.7E+02 0.012 28.0 9.4 133 74-218 395-532 (1057)
71 KOG1651 Glutathione peroxidase 20.7 1.5E+02 0.0034 25.9 4.1 63 74-136 12-75 (171)
No 1
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=100.00 E-value=6.4e-78 Score=572.80 Aligned_cols=230 Identities=32% Similarity=0.599 Sum_probs=214.8
Q ss_pred CeehhhHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHhhhccchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccce
Q 026532 1 MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLSNLK 80 (237)
Q Consensus 1 ~f~y~af~aSa~iG~~i~~~rl~aal~G~~~a~~l~~~l~nlaI~~gav~~~~~L~~~e~k~~~~qlari~Ree~L~rL~ 80 (237)
||||+||+|||+||+||+++|++++++|++++|+|+++++|||||+|++++|+|||+||+|++|+||+||+|||+|+||+
T Consensus 201 ~f~y~a~~asa~ig~~i~~~rl~~a~aG~~~ap~l~~~~~nlaI~igav~~f~~L~~~e~k~~e~q~~ri~Ree~L~rL~ 280 (453)
T PLN03098 201 KFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGIVAFVSLFLWENKKEEEQMSQITRDETLSRLP 280 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHhhcccchHHHHHHHHHHHHHHHhcccHHHHHHHHhhhhhccce
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCceeehhhhcCcceEEEEecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCC----CCccchHH------
Q 026532 81 LRVDEKKIISVNNLRGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPS----FEFEESEE------ 150 (237)
Q Consensus 81 V~l~~~r~v~l~~LR~~aRvVI~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~----~~f~~~~~------ 150 (237)
|+++++|+++|.|||+++|||||||++|||++||++||+||++|.+||||||||+|+++.+. .+||.++.
T Consensus 281 v~l~~~~~v~l~~LRg~~RvvIvAG~~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~~~~~~~~~~gfg~~s~~a~~~p 360 (453)
T PLN03098 281 VRLSTNRIVELVQLRDITRPVILAGTKESVTLAMQKAERYRTELLKRGVLLIPVVWGENKDPQPKKKGFGRSSKAAASLP 360 (453)
T ss_pred EeccCCCEEeHHHhcCcceEEEEECCHHHHHHHHHHhHHHHHHHHHcCcEEEEEecCCCCccccccccccccchhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999877552 23552211
Q ss_pred -------------HHHHhhhhccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhc
Q 026532 151 -------------MKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQ 217 (237)
Q Consensus 151 -------------~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~e 217 (237)
+.+.....++||+|+|+++++|++||+||++++||+|+++|||+|+||||||+||+|+|||++|++|
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~SG~G~P~W~~~v~e 440 (453)
T PLN03098 361 SIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGMPEWQEIVKE 440 (453)
T ss_pred CccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEeeCCeEecCCCCCCCHHHHHHh
Confidence 2223344678899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccC
Q 026532 218 LPPVKGIWSGLLD 230 (237)
Q Consensus 218 Lp~~~g~~s~~~d 230 (237)
|||+||||||+.+
T Consensus 441 LP~~~~~~~~~~~ 453 (453)
T PLN03098 441 LPPLDSLLSKLER 453 (453)
T ss_pred CCcchhhhhhccC
Confidence 9999999999864
No 2
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=99.74 E-value=1e-18 Score=131.37 Aligned_cols=54 Identities=44% Similarity=0.703 Sum_probs=52.7
Q ss_pred CeehhhHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHhhhccchhHHHHHHHHHHHHHHhh
Q 026532 1 MFFYLAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENK 61 (237)
Q Consensus 1 ~f~y~af~aSa~iG~~i~~~rl~aal~G~~~a~~l~~~l~nlaI~~gav~~~~~L~~~e~k 61 (237)
+|||+||+|||+||++|+++|+++ +++++|+++||+||+|++++|+|||+||+|
T Consensus 22 ~f~y~a~~aSa~iG~~i~~~rl~a-------~~~l~~~l~nlaI~igava~~~~L~~~d~k 75 (75)
T PF11998_consen 22 RFFYGAFGASAGIGLFIFLFRLIA-------GPDLNEALPNLAIQIGAVALFAFLFRWDRK 75 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-------CccHHHHhhhHhHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999 899999999999999999999999999986
No 3
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=96.08 E-value=0.072 Score=42.79 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=67.7
Q ss_pred ehhhhcCcceEEEEecC---hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccceEEee
Q 026532 90 SVNNLRGIARLVICSGP---ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTP 166 (237)
Q Consensus 90 ~l~~LR~~aRvVI~AG~---~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~~a~P 166 (237)
+|.+++...|++|+..| ..+...-+...+.-+..|.+|+|+|+.+.=++..... +...|
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~------------------~~~~~ 63 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPG------------------KPLSP 63 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccccc------------------CcCCH
Confidence 58899999999999886 2234444445555678899999999998543221111 11111
Q ss_pred cccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026532 167 VYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL 218 (237)
Q Consensus 167 v~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL 218 (237)
.-+.+-.+.=+++++.--.|.+.|||.|--+-....+|.++.+.+
T Consensus 64 -------~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~I 108 (118)
T PF13778_consen 64 -------EDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTI 108 (118)
T ss_pred -------HHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHH
Confidence 111121222256665667889999999999977777799887653
No 4
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=94.35 E-value=1.4 Score=35.67 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=80.0
Q ss_pred hhhhhhcccceeEecCCceeehhhhcCcceEEE-EecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccch
Q 026532 70 LSREESLSNLKLRVDEKKIISVNNLRGIARLVI-CSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEES 148 (237)
Q Consensus 70 i~Ree~L~rL~V~l~~~r~v~l~~LR~~aRvVI-~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~ 148 (237)
+.-......+.+.--+++.+++.++.+..-++. .+-.-.++...+.....+.+++.++++-++-+..+.. .
T Consensus 35 ~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~--------~ 106 (173)
T PRK03147 35 VQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET--------E 106 (173)
T ss_pred cCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC--------H
Confidence 334455556666555689999999987553333 3333345666667777788888888888888877532 1
Q ss_pred HHHHHHhhhhccceEEeecccchHHHHHHHHH-HHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026532 149 EEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQK-RTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP 219 (237)
Q Consensus 149 ~~~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~-~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp 219 (237)
++..+........ .|+..+. ..+. +.-|+.. -+-.+.+..||+|...-.|..+.+.+.+.|.
T Consensus 107 ~~~~~~~~~~~~~---~~~~~d~-----~~~~~~~~~v~~-~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~ 169 (173)
T PRK03147 107 LAVKNFVNRYGLT---FPVAIDK-----GRQVIDAYGVGP-LPTTFLIDKDGKVVKVITGEMTEEQLEEYLE 169 (173)
T ss_pred HHHHHHHHHhCCC---ceEEECC-----cchHHHHcCCCC-cCeEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 2222222222222 2322111 1122 2225432 4778889999999999899888877766543
No 5
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=94.11 E-value=0.84 Score=35.66 Aligned_cols=124 Identities=16% Similarity=0.177 Sum_probs=74.7
Q ss_pred ceeEecCCceeehhhhcCcceEEEEe-cC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhh
Q 026532 79 LKLRVDEKKIISVNNLRGIARLVICS-GP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTR 156 (237)
Q Consensus 79 L~V~l~~~r~v~l~~LR~~aRvVI~A-G~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~ 156 (237)
+.+.-.+++.+++.++++..-++..- +. -..+...+.....+.+.|.+.|+.||.|..+. .+...++..
T Consensus 6 f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~---------~~~~~~~~~ 76 (140)
T cd03017 6 FTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDS---------VESHAKFAE 76 (140)
T ss_pred ccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC---------HHHHHHHHH
Confidence 34443458999999999754333332 22 34677777777888888999999999988742 122233333
Q ss_pred hhccceEEeecccchHHHHHHHHHHHcCCCCC--------CCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026532 157 KRKRLWQLTPVYVSEWSKWLDEQKRTAGISPE--------SPVYLSLRLDGRVRGSGVGYPPWNAFVAQL 218 (237)
Q Consensus 157 ~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~--------~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL 218 (237)
...-.| |+..+. ..=+-++. |+... .+-+++|..||+|+.+=.|..+++.+-+.|
T Consensus 77 ~~~~~~---~~l~D~-~~~~~~~~---gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 77 KYGLPF---PLLSDP-DGKLAKAY---GVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HhCCCc---eEEECC-ccHHHHHh---CCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 222233 332221 00111111 43221 257899999999999999999877766554
No 6
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=94.00 E-value=0.82 Score=36.24 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=77.7
Q ss_pred cceeEe--cCCceeehhhhcCcceEEEEecC--hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026532 78 NLKLRV--DEKKIISVNNLRGIARLVICSGP--ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE 153 (237)
Q Consensus 78 rL~V~l--~~~r~v~l~~LR~~aRvVI~AG~--~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~ 153 (237)
.+.+.. .+++.++++++++..-+|..-++ =..+...+...+.+.+...+.+|-+|-|..+.+.+ ..+
T Consensus 8 ~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~---------~~~ 78 (146)
T PF08534_consen 8 DFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP---------VRE 78 (146)
T ss_dssp CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH---------HHH
T ss_pred CeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH---------HHH
Confidence 445544 56999999999999877766555 77788888788888888899999999998743311 333
Q ss_pred HhhhhccceEEeecccchHHHHHHHHHHHcCCC--------CCCCeEEEEeeCCeeecccCCCCc
Q 026532 154 FTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGIS--------PESPVYLSLRLDGRVRGSGVGYPP 210 (237)
Q Consensus 154 ~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~--------~~~gvyi~lr~dGrVr~SG~G~Pp 210 (237)
+..+....|.. ..+. ..=+.++. |+. ..-+-++.+.+||+|+.++.|..+
T Consensus 79 ~~~~~~~~~~~---~~D~-~~~~~~~~---~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 79 FLKKYGINFPV---LSDP-DGALAKAL---GVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHTTTTSEE---EEET-TSHHHHHT---TCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHhhCCCceE---Eech-HHHHHHHh---CCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 33333333333 2121 00011111 332 145789999999999999999987
No 7
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=93.84 E-value=1.3 Score=35.74 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=75.6
Q ss_pred hhcccceeEecCCceeehhhhcCcceEEEEecC--hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHH
Q 026532 74 ESLSNLKLRVDEKKIISVNNLRGIARLVICSGP--ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEM 151 (237)
Q Consensus 74 e~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~--~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~ 151 (237)
+.+-.+.+.--+|+.+++.++++..-+|..-.+ -..+...+...+...+++.+.|+.||.|..+ ..++.
T Consensus 8 ~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d---------~~~~~ 78 (154)
T PRK09437 8 DIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD---------KPEKL 78 (154)
T ss_pred CcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC---------CHHHH
Confidence 334444444345789999999997655555432 3456666777788888899999999999763 12333
Q ss_pred HHHhhhhccceEEeecccchHHHHHHHHHHHcCCCC-----------CCCeEEEEeeCCeeecccCCCCcHHH
Q 026532 152 KEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGISP-----------ESPVYLSLRLDGRVRGSGVGYPPWNA 213 (237)
Q Consensus 152 ~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~-----------~~gvyi~lr~dGrVr~SG~G~PpW~~ 213 (237)
.++.....-.|.... +.+ .=+.++ -|+.. .....++|..||+|+.+=.|++|+..
T Consensus 79 ~~~~~~~~~~~~~l~-D~~---~~~~~~---~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 79 SRFAEKELLNFTLLS-DED---HQVAEQ---FGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred HHHHHHhCCCCeEEE-CCC---chHHHH---hCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 444433334443321 211 111121 13211 01345899999999999999888765
No 8
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=92.54 E-value=2.2 Score=33.69 Aligned_cols=117 Identities=13% Similarity=0.188 Sum_probs=70.9
Q ss_pred cceeEecCCceeehhhhcCc-ceEEEEe-c-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHH
Q 026532 78 NLKLRVDEKKIISVNNLRGI-ARLVICS-G-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEF 154 (237)
Q Consensus 78 rL~V~l~~~r~v~l~~LR~~-aRvVI~A-G-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~ 154 (237)
.+.+.=.+++.++++++++. .-+++.. + --..+...+...+.+.+++.+.|+-||-|..+. .+...++
T Consensus 9 ~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~---------~~~~~~~ 79 (149)
T cd03018 9 DFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS---------PFSLRAW 79 (149)
T ss_pred CcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC---------HHHHHHH
Confidence 33343335899999999994 3333342 2 245677777778888889999999888887631 1233444
Q ss_pred hhhhccceEEeecccchH-HHHHHHHHHHcCCCCC-----CCeEEEEeeCCeeecccCCCC
Q 026532 155 TRKRKRLWQLTPVYVSEW-SKWLDEQKRTAGISPE-----SPVYLSLRLDGRVRGSGVGYP 209 (237)
Q Consensus 155 ~~~~~~~~~a~Pv~~~~W-~~wi~eq~~~Agv~~~-----~gvyi~lr~dGrVr~SG~G~P 209 (237)
.......| |+..+.. ..=+-.+ =|+... ...++++..||+|+.+..|..
T Consensus 80 ~~~~~~~~---~~~~D~~~~~~~~~~---~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 80 AEENGLTF---PLLSDFWPHGEVAKA---YGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHhcCCCc---eEecCCCchhHHHHH---hCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 43333333 4433332 1111111 143211 346799999999999999987
No 9
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=90.44 E-value=4.1 Score=31.81 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=70.8
Q ss_pred eEecCCceeehhhhcCcceEEEEe-cChhH-HHHHHhhchhhHHHHhhcC---cEEEEEEeCCCCCCCCccchHHHHHHh
Q 026532 81 LRVDEKKIISVNNLRGIARLVICS-GPASY-IMESFKRSEPFTESLLERG---VLVVSFTTDGNIPSFEFEESEEMKEFT 155 (237)
Q Consensus 81 V~l~~~r~v~l~~LR~~aRvVI~A-G~~e~-V~~al~~a~~~~~~L~~r~---VlVVPv~~~g~~~~~~f~~~~~~~~~~ 155 (237)
+.-.+++.+++.++++..-+++.. ..-.. +...+...+.+.+++.+++ |-+|-|..+...++ .+..+++.
T Consensus 7 l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~-----~~~~~~~~ 81 (142)
T cd02968 7 LTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDT-----PEVLKAYA 81 (142)
T ss_pred EEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCC-----HHHHHHHH
Confidence 333458899999998876665543 33333 7778888899999998875 99999988643111 12334444
Q ss_pred hhhccceEEeecccchHHHHHHHHHHHcCCCC----------CCCeEEEEeeCCeeecc
Q 026532 156 RKRKRLWQLTPVYVSEWSKWLDEQKRTAGISP----------ESPVYLSLRLDGRVRGS 204 (237)
Q Consensus 156 ~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~----------~~gvyi~lr~dGrVr~S 204 (237)
..-...|....-..++...- .++...-...+ ..+.++++..+|+|+..
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 82 KAFGPGWIGLTGTPEEIEAL-AKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHhCCCcEEEECCHHHHHHH-HHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 44335676655443323321 11221111111 13578999999999864
No 10
>PTZ00056 glutathione peroxidase; Provisional
Probab=89.02 E-value=8.3 Score=33.32 Aligned_cols=143 Identities=11% Similarity=0.174 Sum_probs=80.7
Q ss_pred hcccceeEecCCceeehhhhcCcceEEE-EecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH
Q 026532 75 SLSNLKLRVDEKKIISVNNLRGIARLVI-CSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE 153 (237)
Q Consensus 75 ~L~rL~V~l~~~r~v~l~~LR~~aRvVI-~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~ 153 (237)
.+-.+.+.-.+|+.++|+++||..-+|. .|---..+..-+...+.+.+++.+.|+.||-|..+.- ...+.+..++..+
T Consensus 18 ~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~-~~~e~d~~e~~~~ 96 (199)
T PTZ00056 18 SIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQF-LNQEFPNTKDIRK 96 (199)
T ss_pred CCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhc-cCCCCCCHHHHHH
Confidence 4455555545689999999998532222 2222233445566677788888899999988876321 0112233345556
Q ss_pred HhhhhccceEEe-ecccc------hHHHHHHHHHHHc-CCCC---C---CCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026532 154 FTRKRKRLWQLT-PVYVS------EWSKWLDEQKRTA-GISP---E---SPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP 219 (237)
Q Consensus 154 ~~~~~~~~~~a~-Pv~~~------~W~~wi~eq~~~A-gv~~---~---~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp 219 (237)
+.....-.|-.. ++..+ .|+ |+.++.... +... . ....+.|.+||+|+.+=.|..++.++.+.+.
T Consensus 97 f~~~~~~~fpvl~d~~v~g~~~~~l~~-~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~ 175 (199)
T PTZ00056 97 FNDKNKIKYNFFEPIEVNGENTHELFK-FLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIA 175 (199)
T ss_pred HHHHcCCCceeeeeeeccCCccCHHHH-HHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHH
Confidence 555444344321 11112 233 333333221 2111 0 1147899999999998888888877766543
No 11
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=88.74 E-value=8.7 Score=30.20 Aligned_cols=110 Identities=21% Similarity=0.245 Sum_probs=66.5
Q ss_pred ecCCceeehhhhcCcceEEEEec-ChhHHHHHHhhchhhHHHHhhc--CcEEEEEEeCCCCCCCCccchHHHHHHhhhhc
Q 026532 83 VDEKKIISVNNLRGIARLVICSG-PASYIMESFKRSEPFTESLLER--GVLVVSFTTDGNIPSFEFEESEEMKEFTRKRK 159 (237)
Q Consensus 83 l~~~r~v~l~~LR~~aRvVI~AG-~~e~V~~al~~a~~~~~~L~~r--~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~ 159 (237)
++.++++++.+|++..=+|..-+ .=..+.+.+...+.+.+++.+. ++-|+.|..+.+ .++..++.....
T Consensus 4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~--------~~~~~~~~~~~~ 75 (132)
T cd02964 4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS--------EESFNEYFSEMP 75 (132)
T ss_pred ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC--------HHHHHHHHhcCC
Confidence 34458999999999664444433 3455666666667777777765 788888877532 122233333222
Q ss_pred cceEEeecccchHHHHHHHHHHH-cCCCCCCCeEEEEeeCCeeecccC
Q 026532 160 RLWQLTPVYVSEWSKWLDEQKRT-AGISPESPVYLSLRLDGRVRGSGV 206 (237)
Q Consensus 160 ~~~~a~Pv~~~~W~~wi~eq~~~-Agv~~~~gvyi~lr~dGrVr~SG~ 206 (237)
.|...|.. ++ ....++.. -|+. .-+.++.+..||+|+.+..
T Consensus 76 -~~~~~~~~-d~---~~~~~~~~~~~v~-~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 76 -PWLAVPFE-DE---ELRELLEKQFKVE-GIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred -CeEeeccC-cH---HHHHHHHHHcCCC-CCCEEEEECCCCCEEchhH
Confidence 67777754 22 12223322 2542 2588999999999997654
No 12
>PLN02412 probable glutathione peroxidase
Probab=87.50 E-value=12 Score=31.06 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=77.8
Q ss_pred ccceeEecCCceeehhhhcCcceEEEE-ecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHH-H
Q 026532 77 SNLKLRVDEKKIISVNNLRGIARLVIC-SGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKE-F 154 (237)
Q Consensus 77 ~rL~V~l~~~r~v~l~~LR~~aRvVI~-AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~-~ 154 (237)
-.+.+.-.+++.++|+++++..-+|.. |-.-..+..-+...+.+.+++.+.|+.|+-|..+.-.. .+.+..+++.+ +
T Consensus 10 pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~-~~~~~~~~~~~~~ 88 (167)
T PLN02412 10 YDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLG-QEPGSNEEIQQTV 88 (167)
T ss_pred CceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccccccc-CCCCCHHHHHHHH
Confidence 334444446899999999985433333 44444555566777889999999999999998742110 01111122222 2
Q ss_pred hhhhccceEEe-eccc------chHHHHHHHHHHHcCCC----CCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026532 155 TRKRKRLWQLT-PVYV------SEWSKWLDEQKRTAGIS----PESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL 218 (237)
Q Consensus 155 ~~~~~~~~~a~-Pv~~------~~W~~wi~eq~~~Agv~----~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL 218 (237)
..+..-.|-.. ++++ ..+. |+..+. .|.. ...+.-++|..||+|..+=.|..++.++...+
T Consensus 89 ~~~~~~~fpvl~~~d~~g~~~~~~~~-~~~~~~--~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i 160 (167)
T PLN02412 89 CTRFKAEFPIFDKVDVNGKNTAPLYK-YLKAEK--GGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDI 160 (167)
T ss_pred HHccCCCCceEeEEeeCCCCCCHHHH-HHHhhC--CCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHH
Confidence 22212222221 1111 1343 333322 1211 11356789999999999999999988776544
No 13
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=87.24 E-value=9.1 Score=29.64 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=67.2
Q ss_pred CCceeehhhhcCcceEEEEe-c-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhh-ccc
Q 026532 85 EKKIISVNNLRGIARLVICS-G-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKR-KRL 161 (237)
Q Consensus 85 ~~r~v~l~~LR~~aRvVI~A-G-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~-~~~ 161 (237)
+++.+++.++++..-+|..- + .-..+...+...+.+.++|.+.++-+|-|..+. .+...++...- ...
T Consensus 11 ~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~---------~~~~~~~~~~~~~~~ 81 (140)
T cd02971 11 DGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS---------PFSHKAWAEKEGGLN 81 (140)
T ss_pred CCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC---------HHHHHHHHhcccCCC
Confidence 47899999997654444332 2 345666777777888888888898888887631 12233333322 333
Q ss_pred eEEeecccchHHHHHHHHHHHcCCCCC--------CCeEEEEeeCCeeecccCCCCc
Q 026532 162 WQLTPVYVSEWSKWLDEQKRTAGISPE--------SPVYLSLRLDGRVRGSGVGYPP 210 (237)
Q Consensus 162 ~~a~Pv~~~~W~~wi~eq~~~Agv~~~--------~gvyi~lr~dGrVr~SG~G~Pp 210 (237)
| |+-.+.... +.+ .-|+... .+-.++|..+|||+.+..|..|
T Consensus 82 ~---~~l~D~~~~-~~~---~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 82 F---PLLSDPDGE-FAK---AYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred c---eEEECCChH-HHH---HcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 4 333344432 111 2243211 2367899999999999999887
No 14
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=86.17 E-value=15 Score=30.27 Aligned_cols=117 Identities=14% Similarity=0.075 Sum_probs=69.3
Q ss_pred ceeehhhhcCcceEEEEe-cC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhh-------
Q 026532 87 KIISVNNLRGIARLVICS-GP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRK------- 157 (237)
Q Consensus 87 r~v~l~~LR~~aRvVI~A-G~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~------- 157 (237)
+.++|.++++..-++... ++ -..+...+...+.+.+++.+.|+-|+-|..+.. +...++...
T Consensus 20 ~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~---------~~~~~~~~~~~~~~~~ 90 (173)
T cd03015 20 KEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH---------FSHLAWRNTPRKEGGL 90 (173)
T ss_pred eEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH---------HHHHHHHHhhhhhCCc
Confidence 789999999853333332 22 346777888889999999999999998876421 111111111
Q ss_pred hccceEEeecccchHHHHHHHHHHHcCCCC-----CCCeEEEEeeCCeeecccCCCC----cHHHHhhcCC
Q 026532 158 RKRLWQLTPVYVSEWSKWLDEQKRTAGISP-----ESPVYLSLRLDGRVRGSGVGYP----PWNAFVAQLP 219 (237)
Q Consensus 158 ~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~-----~~gvyi~lr~dGrVr~SG~G~P----pW~~~v~eLp 219 (237)
..-.| |+-.+. -.+..+.-|+.. ..+-+++|..||+|+.+-++.. +..++++.|.
T Consensus 91 ~~~~f---~~l~D~----~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~ 154 (173)
T cd03015 91 GKINF---PLLADP----KKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLD 154 (173)
T ss_pred cCcce---eEEECC----chhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 01122 332222 112222225431 1357899999999999986643 4556665553
No 15
>PTZ00256 glutathione peroxidase; Provisional
Probab=85.24 E-value=21 Score=30.01 Aligned_cols=143 Identities=12% Similarity=0.221 Sum_probs=83.6
Q ss_pred hhhhcccceeEecCCceeehhhhcCcceEEEE--ecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchH
Q 026532 72 REESLSNLKLRVDEKKIISVNNLRGIARLVIC--SGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESE 149 (237)
Q Consensus 72 Ree~L~rL~V~l~~~r~v~l~~LR~~aRvVI~--AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~ 149 (237)
.++.+-.+.+.-.+|+.++|+++||..-++++ |--=..+.+-+...+.+.+++.++|+-||-|..+.-... +-...+
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~-~~~~~~ 94 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQ-EPWDEP 94 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEeccccccc-CCCCHH
Confidence 34566666666556899999999986433333 222244556666777788888899999998876321000 111112
Q ss_pred HHHHHhhhh-ccceEEeeccc---------chHHHHHHHHHHHcCCCC----CCC---eEEEEeeCCeeecccCCCCcHH
Q 026532 150 EMKEFTRKR-KRLWQLTPVYV---------SEWSKWLDEQKRTAGISP----ESP---VYLSLRLDGRVRGSGVGYPPWN 212 (237)
Q Consensus 150 ~~~~~~~~~-~~~~~a~Pv~~---------~~W~~wi~eq~~~Agv~~----~~g---vyi~lr~dGrVr~SG~G~PpW~ 212 (237)
+..++..+. .-.| |+.. ..=-+|+.++....+.+. .-+ -.+++.+||+|+.+=.|..++.
T Consensus 95 ~~~~f~~~~~~~~f---pv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~ 171 (183)
T PTZ00256 95 EIKEYVQKKFNVDF---PLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPN 171 (183)
T ss_pred HHHHHHHHhcCCCC---CCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHH
Confidence 333332211 2222 3321 122356777654322111 113 3479999999999988999998
Q ss_pred HHhhcC
Q 026532 213 AFVAQL 218 (237)
Q Consensus 213 ~~v~eL 218 (237)
.+.+++
T Consensus 172 ~l~~~I 177 (183)
T PTZ00256 172 EMIQDI 177 (183)
T ss_pred HHHHHH
Confidence 876654
No 16
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=84.46 E-value=11 Score=29.33 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=64.8
Q ss_pred CceeehhhhcCcceEEEEe-cChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccceEE
Q 026532 86 KKIISVNNLRGIARLVICS-GPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQL 164 (237)
Q Consensus 86 ~r~v~l~~LR~~aRvVI~A-G~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~~a 164 (237)
++.+++.++++..-++..- -.-..+.+.+...+.+.+++.++++-|+.|.....+. + ...+...++.....-.
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~--~-~~~~~~~~~~~~~~~~--- 86 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAF--E-RDLANVKSAVLRYGIT--- 86 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcccc--c-cCHHHHHHHHHHcCCC---
Confidence 6789999998865444433 3345567778888999999999999999886521100 0 1122333333332222
Q ss_pred eecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCC
Q 026532 165 TPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVG 207 (237)
Q Consensus 165 ~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G 207 (237)
.|+..+. ..=+.+ .-|+. .-+-++++.+||+|+.+=.|
T Consensus 87 ~p~~~D~-~~~~~~---~~~v~-~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 87 YPVANDN-DYATWR---AYGNQ-YWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCEEECC-chHHHH---HhCCC-cCCeEEEECCCCcEEEEEec
Confidence 3443221 111111 11432 24788899999999987665
No 17
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=81.19 E-value=14 Score=31.78 Aligned_cols=58 Identities=10% Similarity=0.303 Sum_probs=39.4
Q ss_pred cceeEecCCceeehhhhcCcceEEE-EecChhHHHHHHhhchhhHHHHhhcCcEEEEEEe
Q 026532 78 NLKLRVDEKKIISVNNLRGIARLVI-CSGPASYIMESFKRSEPFTESLLERGVLVVSFTT 136 (237)
Q Consensus 78 rL~V~l~~~r~v~l~~LR~~aRvVI-~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~ 136 (237)
.+.+.--+|+.++|+++||..=+|. .|-.-.+. ..+...+.+.+++.+.|+.|+-|..
T Consensus 7 ~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~-~q~~~L~~L~~~y~~~gl~Vlg~p~ 65 (183)
T PRK10606 7 TTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLT-PQYEQLENIQKAWADQGFVVLGFPC 65 (183)
T ss_pred CcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCc-HHHHHHHHHHHHHhhCCeEEEEeec
Confidence 3444444588999999999543333 22222233 3477788888899999999988876
No 18
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=77.74 E-value=32 Score=26.99 Aligned_cols=113 Identities=10% Similarity=0.042 Sum_probs=62.5
Q ss_pred cCCceeehhhhcCcceEEE-EecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccc
Q 026532 84 DEKKIISVNNLRGIARLVI-CSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRL 161 (237)
Q Consensus 84 ~~~r~v~l~~LR~~aRvVI-~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~ 161 (237)
.+++.++|+++++..-++. -++. -..+...+..-+.+.+++ .|+.||-|..+.. +...++...-..
T Consensus 14 ~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~---------~~~~~~~~~~~~- 81 (143)
T cd03014 14 SDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLP---------FAQKRWCGAEGV- 81 (143)
T ss_pred CCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCH---------HHHHHHHHhcCC-
Confidence 3478999999998643333 3333 256777777777777776 3898888876321 111222111110
Q ss_pred eEEeecccchHHHHHHHHHHHcCCCC-----CCCeEEEEeeCCeeecccCCCCcHH
Q 026532 162 WQLTPVYVSEWSKWLDEQKRTAGISP-----ESPVYLSLRLDGRVRGSGVGYPPWN 212 (237)
Q Consensus 162 ~~a~Pv~~~~W~~wi~eq~~~Agv~~-----~~gvyi~lr~dGrVr~SG~G~PpW~ 212 (237)
.-.|+-.+.- ..+-.+.-|+.. ..+.++++..||+|+..-.|..+|.
T Consensus 82 -~~~~~l~D~~---~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~ 133 (143)
T cd03014 82 -DNVTTLSDFR---DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITD 133 (143)
T ss_pred -CCceEeecCc---ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCccc
Confidence 0112211110 011112224321 1357889999999999998876554
No 19
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=77.17 E-value=37 Score=27.37 Aligned_cols=129 Identities=14% Similarity=0.273 Sum_probs=76.1
Q ss_pred eeEecCCceeehhhhcCcceEEE--EecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeC--CCCCCCCccchHHHHHHh
Q 026532 80 KLRVDEKKIISVNNLRGIARLVI--CSGPASYIMESFKRSEPFTESLLERGVLVVSFTTD--GNIPSFEFEESEEMKEFT 155 (237)
Q Consensus 80 ~V~l~~~r~v~l~~LR~~aRvVI--~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~--g~~~~~~f~~~~~~~~~~ 155 (237)
.+.-.+|++++|++++|.. +|| .|-.=..+...+...+.+.+++...|+.|+-|... +.+ +.+..+...++.
T Consensus 6 ~l~~~~G~~~~l~~~~Gk~-vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~---~~d~~~~~~~f~ 81 (153)
T TIGR02540 6 EVKDARGRTVSLEKYRGKV-SLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGES---EPDSSKEIESFA 81 (153)
T ss_pred eeECCCCCEecHHHhCCCE-EEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccC---CCCCHHHHHHHH
Confidence 3333458999999999965 333 33334456667777888888999999999888741 111 112233444544
Q ss_pred hh-hccceEEeecccc----------hHHHHHHHHHHHcCCCCC-CCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026532 156 RK-RKRLWQLTPVYVS----------EWSKWLDEQKRTAGISPE-SPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP 219 (237)
Q Consensus 156 ~~-~~~~~~a~Pv~~~----------~W~~wi~eq~~~Agv~~~-~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp 219 (237)
.+ -.-. .|+..+ .. .|..+. ..+. |. .=-.+++.+||+|+..=.|..++..|..++.
T Consensus 82 ~~~~~~~---fp~~~d~~~~~~~~~~~~-~~~~~~--~~~~-p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~ 150 (153)
T TIGR02540 82 RRNYGVT---FPMFSKIKILGSEAEPAF-RFLVDS--SKKE-PRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEIT 150 (153)
T ss_pred HHhcCCC---CCccceEecCCCCCCcHH-HHHHhc--CCCC-CCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHH
Confidence 32 1222 343211 12 233221 1111 21 1126889999999999999999998877653
No 20
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=77.03 E-value=5.2 Score=28.30 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=11.9
Q ss_pred HHHhhhHHHHHHHhhhh
Q 026532 57 SRENKAKNAQLARLSRE 73 (237)
Q Consensus 57 ~~e~k~~~~qlari~Re 73 (237)
+++.++.+++++++.+|
T Consensus 47 r~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56667777777777665
No 21
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=76.73 E-value=38 Score=27.31 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=72.1
Q ss_pred CCceeehhhhcCcceEEEE-ecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhh-hccce
Q 026532 85 EKKIISVNNLRGIARLVIC-SGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRK-RKRLW 162 (237)
Q Consensus 85 ~~r~v~l~~LR~~aRvVI~-AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~-~~~~~ 162 (237)
+|+.++|+++||..-++.. |-.-. +...+...+.+.+++.+.|+.||.|..+... ..+.+..+.+.++..+ ..-.|
T Consensus 11 ~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~-~~~~~~~~~~~~f~~~~~~~~f 88 (152)
T cd00340 11 DGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFG-GQEPGSNEEIKEFCETNYGVTF 88 (152)
T ss_pred CCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccc-cCCCCCHHHHHHHHHHhcCCCc
Confidence 4799999999985433332 22223 6677777888888899899999999764310 0111223455565543 23233
Q ss_pred EEeeccc----------chHHHHHHHHHH-HcCCCCC-CCeEEEEeeCCeeecccCCCCcHHHHhh
Q 026532 163 QLTPVYV----------SEWSKWLDEQKR-TAGISPE-SPVYLSLRLDGRVRGSGVGYPPWNAFVA 216 (237)
Q Consensus 163 ~a~Pv~~----------~~W~~wi~eq~~-~Agv~~~-~gvyi~lr~dGrVr~SG~G~PpW~~~v~ 216 (237)
|+.. ..|.-++ ...- ..+-.+. ..-.+.+..||+|+.+=.|..++..+.+
T Consensus 89 ---p~~~d~d~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~ 150 (152)
T cd00340 89 ---PMFAKIDVNGENAHPLYKYLK-EEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEK 150 (152)
T ss_pred ---eeeeeEeccCCCCChHHHHHH-hcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHh
Confidence 3321 1121111 1110 0000000 1258999999999999999888887654
No 22
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=74.22 E-value=28 Score=26.98 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=39.8
Q ss_pred CCceeehhhhcCcceEEE-E--ecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeC
Q 026532 85 EKKIISVNNLRGIARLVI-C--SGPASYIMESFKRSEPFTESLLERGVLVVSFTTD 137 (237)
Q Consensus 85 ~~r~v~l~~LR~~aRvVI-~--AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~ 137 (237)
+++.+++.++++...+|| . +-.=..+.+-+...+.+.+++.+.|+-||-|..+
T Consensus 11 ~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~ 66 (149)
T cd02970 11 GGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE 66 (149)
T ss_pred CCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC
Confidence 478999999976443333 3 2245567777888888999999999999999874
No 23
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=69.71 E-value=65 Score=27.05 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=70.0
Q ss_pred hhhhcccceeEecCCceeehhhhcCcceEEE--EecChhHHHHHHhhchhhHHHHhhc--CcEEEEEEeCCCCCCCCccc
Q 026532 72 REESLSNLKLRVDEKKIISVNNLRGIARLVI--CSGPASYIMESFKRSEPFTESLLER--GVLVVSFTTDGNIPSFEFEE 147 (237)
Q Consensus 72 Ree~L~rL~V~l~~~r~v~l~~LR~~aRvVI--~AG~~e~V~~al~~a~~~~~~L~~r--~VlVVPv~~~g~~~~~~f~~ 147 (237)
.........+.=.+|+++++.+|+|...+|- -+.-...+-..+.......+.|.+. +|-+|-|.+|-+. +.
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~-----DT 102 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPER-----DT 102 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTT-----C-
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCC-----CC
Confidence 4444555555556799999999999765554 3345567777888777777888875 5666666665332 12
Q ss_pred hHHHHHHhhhhccceEEeecccchHHHHHHHHHHHcCC--------CCC-------CCeEEEEeeCCeeecc
Q 026532 148 SEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGI--------SPE-------SPVYLSLRLDGRVRGS 204 (237)
Q Consensus 148 ~~~~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv--------~~~-------~gvyi~lr~dGrVr~S 204 (237)
.+..++....-...|..+--.. .-+++-.+.-++ +++ +..+..+..||||++.
T Consensus 103 p~~L~~Y~~~~~~~~~~ltg~~----~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 103 PEVLKKYAKKFGPDFIGLTGSR----EEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHHHHHHCHTTTCEEEEEEH----HHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHHHHHHhcCCCcceeEeCH----HHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 2334444443334455443221 223333333221 011 3467789999999863
No 24
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=69.17 E-value=51 Score=25.47 Aligned_cols=107 Identities=22% Similarity=0.250 Sum_probs=59.9
Q ss_pred CCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhc--CcEEEEEEeCCCCCCCCccchHHHHHHhhhhccc
Q 026532 85 EKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLER--GVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRL 161 (237)
Q Consensus 85 ~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r--~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~ 161 (237)
+|+.+++.++|+..-+|..-.+ =..+.+-+...+.+.+++.+. ++-|+.+..+.+. ++..+... +..
T Consensus 7 ~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~--------~~~~~~~~--~~~ 76 (131)
T cd03009 7 DGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE--------ESFNDYFS--KMP 76 (131)
T ss_pred CCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH--------HHHHHHHH--cCC
Confidence 5899999999986544444333 233444444444455666665 6777777775331 12222222 245
Q ss_pred eEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeeccc
Q 026532 162 WQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSG 205 (237)
Q Consensus 162 ~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG 205 (237)
|...|...++-..-+. +.-|+ ..-+.++.+..||+|..+.
T Consensus 77 ~~~~~~~~~~~~~~~~---~~~~v-~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 77 WLAVPFSDRERRSRLN---RTFKI-EGIPTLIILDADGEVVTTD 116 (131)
T ss_pred eeEcccCCHHHHHHHH---HHcCC-CCCCEEEEECCCCCEEccc
Confidence 6666654312211121 22254 2258899999999998764
No 25
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=67.35 E-value=32 Score=27.43 Aligned_cols=57 Identities=16% Similarity=0.378 Sum_probs=44.4
Q ss_pred ceeEecCCceeehhhhcCcceEEE-EecChhHHHHHHhhchhhHHHHhhcCcEEEEEEe
Q 026532 79 LKLRVDEKKIISVNNLRGIARLVI-CSGPASYIMESFKRSEPFTESLLERGVLVVSFTT 136 (237)
Q Consensus 79 L~V~l~~~r~v~l~~LR~~aRvVI-~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~ 136 (237)
+.+.--+|+.++|+++||..=+|+ +|-.-.+-. -....+.+.+.+..+|..|+.++-
T Consensus 4 f~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPc 61 (108)
T PF00255_consen 4 FSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPC 61 (108)
T ss_dssp SEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEB
T ss_pred eeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeeh
Confidence 344545689999999999876666 554444444 788889999999999999999997
No 26
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=67.01 E-value=53 Score=28.60 Aligned_cols=105 Identities=12% Similarity=0.155 Sum_probs=66.7
Q ss_pred ecCCceeehhhhcCcceEEE-EecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccc
Q 026532 83 VDEKKIISVNNLRGIARLVI-CSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRL 161 (237)
Q Consensus 83 l~~~r~v~l~~LR~~aRvVI-~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~ 161 (237)
+.+|+.+++++++ +|. -+..=.++..-+-.-+.+.++ .++-|++|.+++.. ..
T Consensus 60 l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~---~g~~Vi~Vs~D~~~-~~------------------ 113 (181)
T PRK13728 60 LSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQ---YGFSVFPYTLDGQG-DT------------------ 113 (181)
T ss_pred CCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHH---cCCEEEEEEeCCCC-CC------------------
Confidence 3468999999998 554 444456666655555555554 38999999986531 11
Q ss_pred eEEeecccchHHHHHHHHHHHcCC-CCCCCeEEEEeeCCeee-cccCCCCcHHHHhhcC
Q 026532 162 WQLTPVYVSEWSKWLDEQKRTAGI-SPESPVYLSLRLDGRVR-GSGVGYPPWNAFVAQL 218 (237)
Q Consensus 162 ~~a~Pv~~~~W~~wi~eq~~~Agv-~~~~gvyi~lr~dGrVr-~SG~G~PpW~~~v~eL 218 (237)
..|+..+.=...+.+ .-|+ ...-+-.+.+.+||++. ....|..+++++.+.+
T Consensus 114 --~fPv~~dd~~~~~~~---~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I 167 (181)
T PRK13728 114 --AFPEALPAPPDVMQT---FFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARM 167 (181)
T ss_pred --CCceEecCchhHHHH---HhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHH
Confidence 234432100122222 2353 23468899999999996 6899999998885543
No 27
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=65.55 E-value=11 Score=32.89 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=68.8
Q ss_pred CceeehhhhcCcceEEE-EecChhHHHHHHhhchhhHHHHhhcCcEE------EEEEeCCCCCCCCccchHHHHHHhhhh
Q 026532 86 KKIISVNNLRGIARLVI-CSGPASYIMESFKRSEPFTESLLERGVLV------VSFTTDGNIPSFEFEESEEMKEFTRKR 158 (237)
Q Consensus 86 ~r~v~l~~LR~~aRvVI-~AG~~e~V~~al~~a~~~~~~L~~r~VlV------VPv~~~g~~~~~~f~~~~~~~~~~~~~ 158 (237)
-+..+..+|+|..|+|- .||--. +++.-.|+-++|.++|+-+ .=|-++.. .++...-.+++....
T Consensus 49 y~~~~~~~l~GKV~lvn~~Aswc~----~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~----~~~~~~fVk~fie~~ 120 (184)
T TIGR01626 49 YQPWGSAELAGKVRVVHHIAGRTS----AKEXNASLIDAIKAAKFPPVKYQTTTIINADDA----IVGTGMFVKSSAKKG 120 (184)
T ss_pred ceeccHHHcCCCEEEEEEEecCCC----hhhccchHHHHHHHcCCCcccccceEEEECccc----hhhHHHHHHHHHHHh
Confidence 38899999999999998 455433 4566788999999999666 44444321 111111112222222
Q ss_pred ccceEEeecccchHHHHHHHHHH---HcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhh
Q 026532 159 KRLWQLTPVYVSEWSKWLDEQKR---TAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVA 216 (237)
Q Consensus 159 ~~~~~a~Pv~~~~W~~wi~eq~~---~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~ 216 (237)
+..+--.|+..| ++.+ .-|+...-.-++++.++|+|+..=.|..++.++-.
T Consensus 121 ~~~~P~~~vllD-------~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 121 KKENPWSQVVLD-------DKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred cccCCcceEEEC-------CcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 222211245433 2222 22553322345899999999999999988876644
No 28
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=64.75 E-value=48 Score=24.88 Aligned_cols=102 Identities=23% Similarity=0.381 Sum_probs=65.3
Q ss_pred CCceeehhhhcCcceEEEEecC--hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccce
Q 026532 85 EKKIISVNNLRGIARLVICSGP--ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLW 162 (237)
Q Consensus 85 ~~r~v~l~~LR~~aRvVI~AG~--~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~ 162 (237)
+++.++|.+|++..-++....+ -.++...+...+.+.+++.+.|+-|+-|..+.. ++..++.....-
T Consensus 14 ~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~---------~~~~~~~~~~~~-- 82 (124)
T PF00578_consen 14 DGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP---------EEIKQFLEEYGL-- 82 (124)
T ss_dssp TSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH---------HHHHHHHHHHTC--
T ss_pred CCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc---------cchhhhhhhhcc--
Confidence 4799999999885555554444 688888999999999999999999999988432 222333322221
Q ss_pred EEeecccchHHHHHH-HHHHHcCCCC-----CCCeEEEEeeCCeeec
Q 026532 163 QLTPVYVSEWSKWLD-EQKRTAGISP-----ESPVYLSLRLDGRVRG 203 (237)
Q Consensus 163 ~a~Pv~~~~W~~wi~-eq~~~Agv~~-----~~gvyi~lr~dGrVr~ 203 (237)
-.|+-.+ -. +-.+.-|+.. .-+.++++..+|+|+-
T Consensus 83 -~~~~~~D-----~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 83 -PFPVLSD-----PDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp -SSEEEEE-----TTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred -ccccccC-----cchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 1222211 01 2222235431 2578999999999974
No 29
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=61.07 E-value=57 Score=23.14 Aligned_cols=104 Identities=23% Similarity=0.341 Sum_probs=59.7
Q ss_pred CCceeehhhhcCcceEEEEec-ChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccceE
Q 026532 85 EKKIISVNNLRGIARLVICSG-PASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQ 163 (237)
Q Consensus 85 ~~r~v~l~~LR~~aRvVI~AG-~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~~ 163 (237)
+++.+++.++++..=++...+ .-.++.+.+.....+.+++.+.++.++.|.++.+ ..+...+....-...|.
T Consensus 8 ~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~-------~~~~~~~~~~~~~~~~~ 80 (116)
T cd02966 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD-------DPAAVKAFLKKYGITFP 80 (116)
T ss_pred CCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC-------CHHHHHHHHHHcCCCcc
Confidence 468899999986543333332 3345666777777777888778999999988643 11222332222222222
Q ss_pred EeecccchHHHHHHHHHHHc-CCCCCCCeEEEEeeCCeeecc
Q 026532 164 LTPVYVSEWSKWLDEQKRTA-GISPESPVYLSLRLDGRVRGS 204 (237)
Q Consensus 164 a~Pv~~~~W~~wi~eq~~~A-gv~~~~gvyi~lr~dGrVr~S 204 (237)
+..+. ..+...+ |+. .-+-++++..+|+|..+
T Consensus 81 ---~~~~~-----~~~~~~~~~~~-~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 81 ---VLLDP-----DGELAKAYGVR-GLPTTFLIDRDGRIRAR 113 (116)
T ss_pred ---eEEcC-----cchHHHhcCcC-ccceEEEECCCCcEEEE
Confidence 22121 1222222 543 34667888999998865
No 30
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=60.99 E-value=32 Score=27.30 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCCCChHHhhhccchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcc
Q 026532 19 ITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREESLS 77 (237)
Q Consensus 19 ~~rl~aal~G~~~a~~l~~~l~nlaI~~gav~~~~~L~~~e~k~~~~qlari~Ree~L~ 77 (237)
....+|.+-|-..++++- +.+-+.++.+..+-.....++.|+|+.+++||-+|.
T Consensus 52 ~~~~vA~~lGi~~~~n~l-----f~~~i~~ll~~~~~l~~~is~le~~i~~L~qeiAl~ 105 (115)
T PF10066_consen 52 ILDWVAKLLGIGRPPNLL-----FYLGILFLLVIIFSLYVRISRLEEKIKRLAQEIALL 105 (115)
T ss_pred HHHHHHHHHCCCchhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556655554443 222233333334444567778889999999998775
No 31
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=60.66 E-value=8.4 Score=37.03 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=48.0
Q ss_pred EEEEeCCCCCCCCccc-hHHHHH--HhhhhccceEEeec------ccchHHHHHHHHHHHcCCCCCCCeEEEEeeCC---
Q 026532 132 VSFTTDGNIPSFEFEE-SEEMKE--FTRKRKRLWQLTPV------YVSEWSKWLDEQKRTAGISPESPVYLSLRLDG--- 199 (237)
Q Consensus 132 VPv~~~g~~~~~~f~~-~~~~~~--~~~~~~~~~~a~Pv------~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dG--- 199 (237)
|-|.|.|.-|..-+-. -+.+.. ..-+. .++...-. =+++|.+++.+ .++.|++..||
T Consensus 58 v~~~w~GGEPlL~~~~f~~~~~~l~~k~~~-~~~i~~siqTNg~LL~~e~~e~l~~----------~~~~IgISiDGp~e 126 (378)
T COG0641 58 VTFTWQGGEPLLAGLDFYRKAVALQQKYAN-GKTISNALQTNGTLLNDEWAEFLAE----------HDFLIGISIDGPEE 126 (378)
T ss_pred eEEEEECCccccchHHHHHHHHHHHHHHhc-CCeeEEEEEEcccccCHHHHHHHHh----------cCceEEEeccCchH
Confidence 8889988777653210 011111 01111 33444333 34788888887 67899999999
Q ss_pred -----eeecccCCCCcHHHHhhcCCCC
Q 026532 200 -----RVRGSGVGYPPWNAFVAQLPPV 221 (237)
Q Consensus 200 -----rVr~SG~G~PpW~~~v~eLp~~ 221 (237)
|+.++|.|+ |++++.-|.-+
T Consensus 127 ihD~~R~~~~GkgT--fd~i~~~i~~L 151 (378)
T COG0641 127 IHDKYRVTKSGKGT--FDRVMKGLELL 151 (378)
T ss_pred hccccccCCCCCcc--HHHHHHHHHHH
Confidence 788888777 89888765443
No 32
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=59.63 E-value=12 Score=28.52 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccceeEecC--Cceeehhh
Q 026532 47 SAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDE--KKIISVNN 93 (237)
Q Consensus 47 gav~~~~~L~~~e~k~~~~qlari~Ree~L~rL~V~l~~--~r~v~l~~ 93 (237)
..+++|-|+..+.+++++|+.+++-.+-.-|.=.+.-+. |+++++.+
T Consensus 11 v~~~i~yf~~~rpqkK~~k~~~~m~~~L~~Gd~VvT~gGi~G~V~~i~d 59 (84)
T TIGR00739 11 LIFLIFYFLIIRPQRKRRKAHKKLIESLKKGDKVLTIGGIIGTVTKIAE 59 (84)
T ss_pred HHHHHHHHheechHHHHHHHHHHHHHhCCCCCEEEECCCeEEEEEEEeC
Confidence 344556666667788887777766665555554555554 56666553
No 33
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=59.16 E-value=1.1e+02 Score=25.72 Aligned_cols=116 Identities=13% Similarity=0.187 Sum_probs=61.0
Q ss_pred Cceeehhhh-cCcceEEEEecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccceEE
Q 026532 86 KKIISVNNL-RGIARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQL 164 (237)
Q Consensus 86 ~r~v~l~~L-R~~aRvVI~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~~a 164 (237)
++.+++.++ ++..-+|..- +..+... +.-.|.-++|.+.|+-|+-|..+.+ .+...++.....-.|-.
T Consensus 57 g~~~~~~~~~~gk~vvv~Fw--atwC~~C-~~e~p~l~~l~~~~~~vi~v~~~~~--------~~~~~~~~~~~~~~~~~ 125 (185)
T PRK15412 57 GQFYQADVLTQGKPVLLNVW--ATWCPTC-RAEHQYLNQLSAQGIRVVGMNYKDD--------RQKAISWLKELGNPYAL 125 (185)
T ss_pred CccccHHHhcCCCEEEEEEE--CCCCHHH-HHHHHHHHHHHHcCCEEEEEECCCC--------HHHHHHHHHHcCCCCce
Confidence 466777776 4543333333 3333222 2223333556677998888876321 12233333322222321
Q ss_pred eecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcCC
Q 026532 165 TPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLP 219 (237)
Q Consensus 165 ~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eLp 219 (237)
...+.+. . +. +.-|+. .-+..+++..||+|+.+-.|..++..+-+.+.
T Consensus 126 ~~~D~~~--~-~~---~~~gv~-~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~ 173 (185)
T PRK15412 126 SLFDGDG--M-LG---LDLGVY-GAPETFLIDGNGIIRYRHAGDLNPRVWESEIK 173 (185)
T ss_pred EEEcCCc--c-HH---HhcCCC-cCCeEEEECCCceEEEEEecCCCHHHHHHHHH
Confidence 1112110 0 00 112542 35789999999999999999999877655543
No 34
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=57.22 E-value=19 Score=28.77 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhhhhcccceeEecC--Cceeehhh
Q 026532 48 AVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDE--KKIISVNN 93 (237)
Q Consensus 48 av~~~~~L~~~e~k~~~~qlari~Ree~L~rL~V~l~~--~r~v~l~~ 93 (237)
.+++|-|+..+-+|+++++.+++-.+-.-|-=.+..+. |+++++.+
T Consensus 27 i~~i~yf~~~RpqkK~~k~~~~~~~~Lk~Gd~VvT~gGi~G~Vv~i~~ 74 (106)
T PRK05585 27 FFAIFYFLIIRPQQKRQKEHKKMLSSLAKGDEVVTNGGIIGKVTKVSE 74 (106)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCCCEEEECCCeEEEEEEEeC
Confidence 33444455556777777776665555444444444443 56666544
No 35
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=52.68 E-value=94 Score=23.07 Aligned_cols=107 Identities=16% Similarity=0.235 Sum_probs=55.5
Q ss_pred eeEecCCceeehhhhc-CcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhh
Q 026532 80 KLRVDEKKIISVNNLR-GIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRK 157 (237)
Q Consensus 80 ~V~l~~~r~v~l~~LR-~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~ 157 (237)
.+...+|+.++|.+++ +..-+|...++ =..+...+...+.+.++. ..++-|+ .+.+.+ .++..++...
T Consensus 4 ~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~-~~~~~vi-~v~~~~--------~~~~~~~~~~ 73 (114)
T cd02967 4 DLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAE-ADWLDVV-LASDGE--------KAEHQRFLKK 73 (114)
T ss_pred eeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHh-cCCcEEE-EEeCCC--------HHHHHHHHHH
Confidence 3444468999999998 54434444332 344555544444444444 3456666 333221 1122222222
Q ss_pred hccceEEeecccchHHHHHHHHHH-HcCCCCCCCeEEEEeeCCeeecccC
Q 026532 158 RKRLWQLTPVYVSEWSKWLDEQKR-TAGISPESPVYLSLRLDGRVRGSGV 206 (237)
Q Consensus 158 ~~~~~~a~Pv~~~~W~~wi~eq~~-~Agv~~~~gvyi~lr~dGrVr~SG~ 206 (237)
..+...|+-. +.++. .-|+. .-+-.+++..||+|+.+|.
T Consensus 74 --~~~~~~p~~~-------~~~~~~~~~~~-~~P~~~vid~~G~v~~~~~ 113 (114)
T cd02967 74 --HGLEAFPYVL-------SAELGMAYQVS-KLPYAVLLDEAGVIAAKGL 113 (114)
T ss_pred --hCCCCCcEEe-------cHHHHhhcCCC-CcCeEEEECCCCeEEeccc
Confidence 2222245432 22222 22542 2588999999999999874
No 36
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=52.31 E-value=21 Score=26.75 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=19.7
Q ss_pred ccchhHHHHHHHHHHHHHHhhh---HHHHHHHhhhhhhcc
Q 026532 41 GLSIDVSAVSLFAFLYSRENKA---KNAQLARLSREESLS 77 (237)
Q Consensus 41 nlaI~~gav~~~~~L~~~e~k~---~~~qlari~Ree~L~ 77 (237)
-+.-|....++|+||+..-.|. ++++.. .||+.+-
T Consensus 8 ~~~sQG~fA~LFv~Ll~yvlK~~~~re~~~~--~RE~kyq 45 (71)
T PF10960_consen 8 LALSQGIFAVLFVWLLFYVLKENKKREEKQE--EREEKYQ 45 (71)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHhHHhHHHHH--HHHHHHH
Confidence 3444555667888888765444 333222 6776553
No 37
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=50.94 E-value=34 Score=29.26 Aligned_cols=103 Identities=19% Similarity=0.309 Sum_probs=61.1
Q ss_pred CCceeehhhhcCcceEEEEecChhHHHHHHhhc---hhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccc
Q 026532 85 EKKIISVNNLRGIARLVICSGPASYIMESFKRS---EPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRL 161 (237)
Q Consensus 85 ~~r~v~l~~LR~~aRvVI~AG~~e~V~~al~~a---~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~ 161 (237)
+++.++|+++||. .||+..=|+..----=..| +....+|.+.|+.|+=|..|.. +.-+++..+..-.
T Consensus 19 ~g~~v~Lsd~~Gk-~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~---------~~~~~F~~k~~L~ 88 (157)
T COG1225 19 DGETVSLSDLRGK-PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSP---------KSHKKFAEKHGLT 88 (157)
T ss_pred CCCEEehHHhcCC-cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCH---------HHHHHHHHHhCCC
Confidence 4788999999999 6666555554433222223 3334568888999999888542 1222233332222
Q ss_pred eEEeecccchHHHHHHHHHHHcCCC-----------CCCCeEEEEeeCCeeecc
Q 026532 162 WQLTPVYVSEWSKWLDEQKRTAGIS-----------PESPVYLSLRLDGRVRGS 204 (237)
Q Consensus 162 ~~a~Pv~~~~W~~wi~eq~~~Agv~-----------~~~gvyi~lr~dGrVr~S 204 (237)
.|.-.|.|.+ +.++- |+- .-+-..+++..||+|+..
T Consensus 89 ---f~LLSD~~~~-v~~~y---gv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~ 135 (157)
T COG1225 89 ---FPLLSDEDGE-VAEAY---GVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV 135 (157)
T ss_pred ---ceeeECCcHH-HHHHh---CcccccccCccccccccceEEEECCCCeEEEE
Confidence 4554566666 22222 321 124578899999999875
No 38
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=49.52 E-value=32 Score=27.84 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccceeEecC--Cceeehh
Q 026532 47 SAVSLFAFLYSRENKAKNAQLARLSREESLSNLKLRVDE--KKIISVN 92 (237)
Q Consensus 47 gav~~~~~L~~~e~k~~~~qlari~Ree~L~rL~V~l~~--~r~v~l~ 92 (237)
..+++|-|+..+-+|+++|+.+++-.+-.-|-=.+..+. |+++++.
T Consensus 12 ~i~~i~yF~~iRPQkKr~K~~~~m~~~Lk~GD~VvT~gGi~G~V~~I~ 59 (109)
T PRK05886 12 LIMGGFMYFASRRQRKAMQATIDLHESLQPGDRVHTTSGLQATIVGIT 59 (109)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHhcCCCCEEEECCCeEEEEEEEe
Confidence 344555666666777777766655444444433444443 5666655
No 39
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=48.59 E-value=37 Score=22.88 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=24.5
Q ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHhhhh
Q 026532 41 GLSIDVSAVSLFAFLYSRENKAKNAQLARLSRE 73 (237)
Q Consensus 41 nlaI~~gav~~~~~L~~~e~k~~~~qlari~Re 73 (237)
..|+-+.+++...+...+++++..+++++..+.
T Consensus 11 sYg~t~l~l~~li~~~~~~~r~~~~~l~~~~~r 43 (45)
T TIGR03141 11 AYGITALVLAGLILWSLLDRRRLLRELRRLEAR 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456667777777778888888888888776643
No 40
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=46.00 E-value=81 Score=27.79 Aligned_cols=63 Identities=17% Similarity=0.123 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHH---HHHHHhcCCCC------CCChHHhhhccchhHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 026532 9 ASGSLGGLIAIT---QLIGALANPAR------AADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLARLS 71 (237)
Q Consensus 9 aSa~iG~~i~~~---rl~aal~G~~~------a~~l~~~l~nlaI~~gav~~~~~L~~~e~k~~~~qlari~ 71 (237)
.|=+||+|-++. +.+.+++++.+ ++.+.|+|-..++-+.+..-..+.|+.=+++-++++.++.
T Consensus 128 ~aP~lGL~GTV~GIm~aF~~i~~~~~~~~a~vA~GIseAL~aTA~GL~vAIPAvi~yn~l~r~~~~~~~~~e 199 (216)
T COG0811 128 IAPFLGLLGTVWGIMPAFIGIGAGGGADLAVVAPGISEALIATAIGLFVAIPAVVAYNVLRRKVEELLAKLE 199 (216)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544 44444442222 3677788877777776666666666666666666666655
No 41
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=44.84 E-value=50 Score=22.26 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=26.6
Q ss_pred hccchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhh
Q 026532 40 KGLSIDVSAVSLFAFLYSRENKAKNAQLARLSREE 74 (237)
Q Consensus 40 ~nlaI~~gav~~~~~L~~~e~k~~~~qlari~Ree 74 (237)
...|+-+.+++.+.+...++.++-.+++++..+.|
T Consensus 9 ~sYg~t~~~l~~l~~~~~~~~r~~~~~l~~~~~r~ 43 (46)
T PF04995_consen 9 SSYGVTALVLAGLIVWSLRRRRRLRKELKRLEARE 43 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34567777888888888888888888888876544
No 42
>PRK06280 hypothetical protein; Provisional
Probab=44.81 E-value=45 Score=25.23 Aligned_cols=46 Identities=24% Similarity=0.208 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHhhhccchhHHHH-HHHHHHHHH
Q 026532 5 LAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAV-SLFAFLYSR 58 (237)
Q Consensus 5 ~af~aSa~iG~~i~~~rl~aal~G~~~a~~l~~~l~nlaI~~gav-~~~~~L~~~ 58 (237)
.+....+..|+.+++.=++-. |||+. +..+++..+.+ ++|.+-+++
T Consensus 25 ~avi~~g~~gl~~al~f~~l~------APDvA--lTq~~Ve~~~~t~lfl~~l~~ 71 (77)
T PRK06280 25 KCAILTGFGGLGLAYLYQLLL------APDVA--LTEAILGGAILPAFFAFTVRR 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhC------CcHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 345567777877776555542 89998 99999999988 777776665
No 43
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=43.66 E-value=86 Score=25.32 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 026532 11 GSLGGLIAITQLIGALAN 28 (237)
Q Consensus 11 a~iG~~i~~~rl~aal~G 28 (237)
|.+|+++-+...+.+++.
T Consensus 69 GLlGTv~Gmi~~f~~l~~ 86 (139)
T PF01618_consen 69 GLLGTVIGMIEAFQALAE 86 (139)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 445555555555555543
No 44
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=43.47 E-value=38 Score=27.27 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCC
Q 026532 171 EWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVG 207 (237)
Q Consensus 171 ~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G 207 (237)
.|+.||++++-..| --.--.++.+||.||.+-.|
T Consensus 2 sWq~yvd~~l~~~g---~~~~AaI~g~dGsvWA~s~g 35 (129)
T smart00392 2 SWQAYVDNLLVGSG---CVDAAAIGGKDGSVWAASAG 35 (129)
T ss_pred ChHHHHHHHhhccC---CCcEEEEEeCCCCeeeccCC
Confidence 49999999985444 12445667789999999888
No 45
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=43.41 E-value=1.9e+02 Score=23.88 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=59.0
Q ss_pred cCCceeehhhhcCcceEEEEecCh--hHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccc
Q 026532 84 DEKKIISVNNLRGIARLVICSGPA--SYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRL 161 (237)
Q Consensus 84 ~~~r~v~l~~LR~~aRvVI~AG~~--e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~ 161 (237)
.+++.+++++++|..-++...-+. ..+..-+...+.+.+++ .|+-||.|..+. + +...++.....-.
T Consensus 32 ~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~--~-------~~~~~f~~~~~~~ 100 (167)
T PRK00522 32 NDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADL--P-------FAQKRFCGAEGLE 100 (167)
T ss_pred CCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCC--H-------HHHHHHHHhCCCC
Confidence 347899999999875444444333 45666666666666666 388888887642 1 1222222221111
Q ss_pred eEEeecccc-hHHHHHHHHHHHcCCCCC--------CCeEEEEeeCCeeecccCCCC
Q 026532 162 WQLTPVYVS-EWSKWLDEQKRTAGISPE--------SPVYLSLRLDGRVRGSGVGYP 209 (237)
Q Consensus 162 ~~a~Pv~~~-~W~~wi~eq~~~Agv~~~--------~gvyi~lr~dGrVr~SG~G~P 209 (237)
-.|+-.| .-.+ +-. .-|+... ...++++..||+|+.+-++.+
T Consensus 101 --~~~~lsD~~~~~-~~~---~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~ 151 (167)
T PRK00522 101 --NVITLSDFRDHS-FGK---AYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPE 151 (167)
T ss_pred --CceEeecCCccH-HHH---HhCCeecccccCCceeeEEEEECCCCeEEEEEECCC
Confidence 0222211 1111 111 1143211 237899999999999987655
No 46
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=39.94 E-value=2e+02 Score=23.31 Aligned_cols=116 Identities=18% Similarity=0.268 Sum_probs=64.0
Q ss_pred eEecCCceeehhhh-cCcceEEEEecChh-HHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhh
Q 026532 81 LRVDEKKIISVNNL-RGIARLVICSGPAS-YIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKR 158 (237)
Q Consensus 81 V~l~~~r~v~l~~L-R~~aRvVI~AG~~e-~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~ 158 (237)
+.-.+++.+++.++ .+...++....+-= .+.+.+.....+.+++.+.++-+|.|..+... ..+.+..+...+...+.
T Consensus 9 l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~-~~~~d~~~~~~~~~~~~ 87 (171)
T cd02969 9 LPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIE-AYPEDSPENMKAKAKEH 87 (171)
T ss_pred ccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccc-cccccCHHHHHHHHHHC
Confidence 33345789999999 66666665554432 22334556677788888889999999875321 00111222333333332
Q ss_pred ccceEEeecccchHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeeccc
Q 026532 159 KRLWQLTPVYVSEWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSG 205 (237)
Q Consensus 159 ~~~~~a~Pv~~~~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG 205 (237)
.-.|... .+.+. .-.+.-|+. ..+..+++..||+|+-++
T Consensus 88 ~~~~~~l-~D~~~------~~~~~~~v~-~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 88 GYPFPYL-LDETQ------EVAKAYGAA-CTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred CCCceEE-ECCch------HHHHHcCCC-cCCcEEEECCCCeEEEee
Confidence 3333211 12111 111222542 246789999999999875
No 47
>PTZ00316 profilin; Provisional
Probab=37.28 E-value=23 Score=30.25 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHcCCCCCCCeEEEEee-CCeeecccCCC
Q 026532 171 EWSKWLDEQKRTAGISPESPVYLSLRL-DGRVRGSGVGY 208 (237)
Q Consensus 171 ~W~~wi~eq~~~Agv~~~~gvyi~lr~-dGrVr~SG~G~ 208 (237)
.|+.|+++++--.| .-+--.++.+ ||.||.+-.|.
T Consensus 2 SWQaYVD~~L~gsg---~v~kAAIiG~~DGsvWA~S~gF 37 (150)
T PTZ00316 2 SWQAYVDDSLIGSG---NMHSAAIVGLADGSYWAYGGSY 37 (150)
T ss_pred CHHHHHHhhhhccC---CcceEEEEecCCCCEeecCCCC
Confidence 39999999886443 1233466887 99999985554
No 48
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=36.17 E-value=36 Score=25.67 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHH
Q 026532 44 IDVSAVSLFAFLYSRENKAKNAQLAR 69 (237)
Q Consensus 44 I~~gav~~~~~L~~~e~k~~~~qlar 69 (237)
+=+..+++|-|+..+.+|+++|+.++
T Consensus 7 ~lv~~~~i~yf~~~rpqkk~~k~~~~ 32 (82)
T PF02699_consen 7 PLVIIFVIFYFLMIRPQKKQQKEHQE 32 (82)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhheecHHHHHHHHHHH
Confidence 33455666677777777777765444
No 49
>PF03210 Paramyx_P_V_C: Paramyxovirus P/V phosphoprotein C-terminal; InterPro: IPR004897 Paramyxoviral P genes are able to generate more than one product, using alternative reading frames and RNA editing. The P gene encodes the structural phosphoprotein P. In addition, it encodes several non-structural proteins present in the infected cell but not in the virus particle. This family includes phosphoprotein P and the non-structural phosphoprotein V from different paramyxoviruses. Phosphoprotein P is a modular protein organised into two moieties that are both functionally and structurally distinct: a well-conserved C-terminal moiety that contains all the regions required for transcription, and a poorly conserved, intrinsically unstructured N-terminal moiety that provides several additional functions required for replication. The N-terminal moiety is responsible for binding to newly synthesized free N(0) (nucleoprotein that has not yet bound RNA), in order to prevent the binding of N(0) to cellular RNA. The C-terminal moiety consists of an oligomerisation domain, an N-RNA (nucleoprotein-RNA)-binding domain and an L polymerase-binding domain [, ]. Phosphoprotein P is essential for the activity of the RNA polymerase complex which it forms with another subunit, L IPR001016 from INTERPRO. Although all the catalytic activities of the polymerase are associated with the L subunit, its function requires specific interactions with phosphoprotein P []. The P and V phosphoproteins are amino co-terminal, but diverge at their C-termini. This difference is generated by an RNA-editing mechanism in which one or two non-templated G residues are inserted into P-gene-derived mRNA. In Measles virus and Sendai virus, one G residue is inserted and the edited transcript encodes the V protein. In Mumps virus, Simian virus 5 and Newcastle disease virus, two G residues are inserted, and the edited transcript codes for the P protein []. Being phosphoproteins, both P and V are rich in serine and threonine residues over their whole lengths. In addition, the V proteins are rich in cysteine residues at the C-termini [].; PDB: 1T6O_A 2K9D_A 1OKS_A 3BBZ_B.
Probab=36.03 E-value=12 Score=31.75 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhhhhcccceeEe-cCCceeehhhhcCcc--eEEEEecChhHHHHHHhhchhhHHHHhh
Q 026532 71 SREESLSNLKLRV-DEKKIISVNNLRGIA--RLVICSGPASYIMESFKRSEPFTESLLE 126 (237)
Q Consensus 71 ~Ree~L~rL~V~l-~~~r~v~l~~LR~~a--RvVI~AG~~e~V~~al~~a~~~~~~L~~ 126 (237)
+=|..|+..++=- |+++..|+.++|.+. ++||++|+.....+..+.-+.++.+|.+
T Consensus 33 tiEG~l~si~ImdPG~~~~~s~~~~k~~~~~~pVI~~g~g~~~~~v~~~~~I~~d~Lar 91 (155)
T PF03210_consen 33 TIEGQLTSIMIMDPGNGSVSSLNEMKKNPKLKPVIVRGPGRGLKEVTQDGTIDLDELAR 91 (155)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHheeeEecCCCCCCCCHHHHHhCCCcCcEEecCCCCcccccCcCCeecccccCC
Confidence 3567777776554 458889999999975 9999999999888887766666666654
No 50
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=34.33 E-value=99 Score=26.31 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=40.2
Q ss_pred CCceeehhhhcCcceEEEEecC---hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCC
Q 026532 85 EKKIISVNNLRGIARLVICSGP---ASYIMESFKRSEPFTESLLERGVLVVSFTTDG 138 (237)
Q Consensus 85 ~~r~v~l~~LR~~aRvVI~AG~---~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g 138 (237)
+++.++|++++|. .+++.--+ -..+...+.....+.++|.++|+-||-|..+.
T Consensus 25 ~~~~v~l~d~~Gk-~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 25 SFKKISLSSYKGK-WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCcEEeHHHHCCC-EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 3588999999986 34445554 34566666777888999999999999998753
No 51
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=29.64 E-value=77 Score=25.74 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=20.3
Q ss_pred HHHHHHhhhHHHHHHHhhhhhhcccceeEecC--Cceeehh
Q 026532 54 FLYSRENKAKNAQLARLSREESLSNLKLRVDE--KKIISVN 92 (237)
Q Consensus 54 ~L~~~e~k~~~~qlari~Ree~L~rL~V~l~~--~r~v~l~ 92 (237)
||..|-+++++|+.+.+-..-.-|-=.|..+. |+++.+.
T Consensus 17 yf~iRPQkKr~Ke~~em~~sLk~GD~VvT~GGi~G~V~~I~ 57 (113)
T PRK06531 17 FFMQRQQKKQAQERQNQLNAIQKGDEVVTIGGLYGTVDEVD 57 (113)
T ss_pred HheechHHHHHHHHHHHHHhcCCCCEEEECCCcEEEEEEEe
Confidence 34456667777776665544444433444443 4554443
No 52
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=29.50 E-value=4.2e+02 Score=23.82 Aligned_cols=142 Identities=14% Similarity=0.184 Sum_probs=77.5
Q ss_pred hhhcccceeEecCCceeehhhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHH
Q 026532 73 EESLSNLKLRVDEKKIISVNNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEM 151 (237)
Q Consensus 73 ee~L~rL~V~l~~~r~v~l~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~ 151 (237)
++.+-.+.+.-.+|+.++|.++++..-+|..-.+ =..+..-+...+.+.+++.+.|+-||-|..+.-. ..+.+..++.
T Consensus 76 g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~-~~e~~s~~ei 154 (236)
T PLN02399 76 EKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFG-GQEPGSNPEI 154 (236)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEeccccc-ccCCCCHHHH
Confidence 3445555555456899999999985433332222 2223333556677888888899999988864210 0111222344
Q ss_pred HHHhh-hhccceEEe-ecccch------HHHHHHHHHHHcC-CC----CCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026532 152 KEFTR-KRKRLWQLT-PVYVSE------WSKWLDEQKRTAG-IS----PESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL 218 (237)
Q Consensus 152 ~~~~~-~~~~~~~a~-Pv~~~~------W~~wi~eq~~~Ag-v~----~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL 218 (237)
.++.. +-.-.|-.. ..+.+. + .|+. ...| +. ...+..+.+.+||+|..+=.|..++.+|...+
T Consensus 155 ~~f~~~~~g~~fPvl~~~D~~G~~~~~~y-~~l~---~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I 230 (236)
T PLN02399 155 KQFACTRFKAEFPIFDKVDVNGPSTAPVY-QFLK---SNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDI 230 (236)
T ss_pred HHHHHHhcCCCCccccccCCCcchhhHHH-HHHH---HhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHH
Confidence 44432 212222111 111111 1 1221 1222 21 11246889999999999999998888876654
Q ss_pred C
Q 026532 219 P 219 (237)
Q Consensus 219 p 219 (237)
.
T Consensus 231 ~ 231 (236)
T PLN02399 231 Q 231 (236)
T ss_pred H
Confidence 3
No 53
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=29.27 E-value=19 Score=34.77 Aligned_cols=21 Identities=33% Similarity=0.888 Sum_probs=18.1
Q ss_pred eeecccCCCCcHHHHhhcCCCC
Q 026532 200 RVRGSGVGYPPWNAFVAQLPPV 221 (237)
Q Consensus 200 rVr~SG~G~PpW~~~v~eLp~~ 221 (237)
|.-.||-|+|+|. .-+.+||.
T Consensus 87 RlT~SGLgcpdWp-~~G~~~P~ 107 (403)
T PTZ00127 87 RLTESGLSMTDWK-FIGVKPPI 107 (403)
T ss_pred cccccccCCCCCC-CCCEECCC
Confidence 5567999999999 99988885
No 54
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=28.46 E-value=37 Score=26.47 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCC
Q 026532 171 EWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGY 208 (237)
Q Consensus 171 ~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~ 208 (237)
.|+.||++++-..|- ---..++..||.|+.+.-|.
T Consensus 1 sW~~~i~~~L~~~~~---~~~aaI~~~dG~vwA~s~~f 35 (121)
T PF00235_consen 1 SWQDYIDEQLIGTGN---ITKAAIIGSDGSVWASSPGF 35 (121)
T ss_dssp THHHHHHTHHHTTSS---ESEEEEEETTSSEEEEETTG
T ss_pred ChhHHHHHHhcccCc---EeEEEEEcCCCCEEEecCCC
Confidence 599999988855542 12344556999999998885
No 55
>COG4365 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.83 E-value=93 Score=31.20 Aligned_cols=84 Identities=19% Similarity=0.118 Sum_probs=57.8
Q ss_pred HHHHHHHhhhHHHHHHHhhhhhhc-----ccc------eeEecCCceeehhhhcCc-ceEEE-------EecChhHHHHH
Q 026532 53 AFLYSRENKAKNAQLARLSREESL-----SNL------KLRVDEKKIISVNNLRGI-ARLVI-------CSGPASYIMES 113 (237)
Q Consensus 53 ~~L~~~e~k~~~~qlari~Ree~L-----~rL------~V~l~~~r~v~l~~LR~~-aRvVI-------~AG~~e~V~~a 113 (237)
..+|-.+-..++-+.+|++++-++ +.- .+-.+++-..-+..|-+- +|||| +.||.=.|-..
T Consensus 26 lg~Fdy~i~q~dvfq~Rle~~~e~dr~aLAaaLreYh~dlg~s~~~e~~iekLkdp~S~vVvgGQQAGLltGPlYTihKi 105 (537)
T COG4365 26 LGFFDYDIHQRDVFQARLEDLPELDRVALAAALREYHRDLGTSAGVEALIEKLKDPESRVVVGGQQAGLLTGPLYTIHKI 105 (537)
T ss_pred hhhhhhcccccHHHHHHHhhcccccHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCCceEEecccccccccCchHHHHHH
Confidence 344555556666666666654333 221 111123444556667775 78886 67888899999
Q ss_pred HhhchhhHHHHhhcCcEEEEEEe
Q 026532 114 FKRSEPFTESLLERGVLVVSFTT 136 (237)
Q Consensus 114 l~~a~~~~~~L~~r~VlVVPv~~ 136 (237)
+-....-|+...+-+|=||||-|
T Consensus 106 ~siilLAreqede~~vpVVpVfW 128 (537)
T COG4365 106 ASIILLAREQEDELDVPVVPVFW 128 (537)
T ss_pred HHHHHhhHhhhhhhCCCeeEEEE
Confidence 98889999999999999999999
No 56
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=26.80 E-value=3.1e+02 Score=27.14 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=68.7
Q ss_pred ceeEecC--CceeehhhhcCcceEEEEecCh-------------hHHHHHHhhchhhHHHHhhcCcE-EEE-------EE
Q 026532 79 LKLRVDE--KKIISVNNLRGIARLVICSGPA-------------SYIMESFKRSEPFTESLLERGVL-VVS-------FT 135 (237)
Q Consensus 79 L~V~l~~--~r~v~l~~LR~~aRvVI~AG~~-------------e~V~~al~~a~~~~~~L~~r~Vl-VVP-------v~ 135 (237)
-.+.+.. ++.+++.+|+....-|+++++. ..|..|+.-...+....+..... -.| |+
T Consensus 188 v~~~~~~~vG~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvV 267 (457)
T COG0493 188 VEFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVV 267 (457)
T ss_pred eEEEEcceECCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEE
Confidence 4455544 7899999999998555555443 34555555555555444442221 111 11
Q ss_pred eCCCCCCCCccchHHHHH--Hhhhhc-cceEEe-e---cccchHHHH----HHHHHHHcCCCCC---CCeEEEEeeCCee
Q 026532 136 TDGNIPSFEFEESEEMKE--FTRKRK-RLWQLT-P---VYVSEWSKW----LDEQKRTAGISPE---SPVYLSLRLDGRV 201 (237)
Q Consensus 136 ~~g~~~~~~f~~~~~~~~--~~~~~~-~~~~a~-P---v~~~~W~~w----i~eq~~~Agv~~~---~gvyi~lr~dGrV 201 (237)
++ +|.+..+-. +..... .-.... | ..+.+|..| .-+....+|+... .+.-++...+|||
T Consensus 268 IG-------gG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV 340 (457)
T COG0493 268 IG-------GGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRV 340 (457)
T ss_pred EC-------CCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcE
Confidence 22 222211111 111111 111110 1 256789999 3333333464222 5788999999999
Q ss_pred ecccCCCCcHHHH
Q 026532 202 RGSGVGYPPWNAF 214 (237)
Q Consensus 202 r~SG~G~PpW~~~ 214 (237)
..+-.+.+.|...
T Consensus 341 ~~~~~~~~~~~~~ 353 (457)
T COG0493 341 TGVKFGRVEPGEY 353 (457)
T ss_pred eeeecccccccCc
Confidence 9999999877654
No 57
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=26.05 E-value=1.1e+02 Score=24.07 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=35.0
Q ss_pred eEEEEecChhHHHH-HHhhchhhHHHHhhcCcEEEEEEeCCC
Q 026532 99 RLVICSGPASYIME-SFKRSEPFTESLLERGVLVVSFTTDGN 139 (237)
Q Consensus 99 RvVI~AG~~e~V~~-al~~a~~~~~~L~~r~VlVVPv~~~g~ 139 (237)
|+.|+.|+.+.=.+ |++.|...-+.|.+.+-=|+|+-++.+
T Consensus 2 ~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~ 43 (117)
T PF01820_consen 2 RVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVIPIYIDKD 43 (117)
T ss_dssp EEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEEEEEETTT
T ss_pred eEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEEEEeecCC
Confidence 67888887766555 999999999999999999999999553
No 58
>PHA02108 hypothetical protein
Probab=25.83 E-value=41 Score=23.13 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=17.1
Q ss_pred hhccchhHHHHHHHHHHHHH
Q 026532 39 LKGLSIDVSAVSLFAFLYSR 58 (237)
Q Consensus 39 l~nlaI~~gav~~~~~L~~~ 58 (237)
.+|.+||+|-++-|+.+|.-
T Consensus 3 ~k~~~inigyiasf~lfy~m 22 (48)
T PHA02108 3 TKNIVINIGYIASFGLFYAM 22 (48)
T ss_pred chhheeehHHHHHHHHHHHH
Confidence 57899999999999988753
No 59
>COG4794 EscS Type III secretory pathway, component EscS [Intracellular trafficking and secretion]
Probab=24.29 E-value=1.6e+02 Score=23.14 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChHHhhhccchhHHHHHHHHHHHH
Q 026532 7 FVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYS 57 (237)
Q Consensus 7 f~aSa~iG~~i~~~rl~aal~G~~~a~~l~~~l~nlaI~~gav~~~~~L~~ 57 (237)
..+++.+|.+|++.|.+.- ++|---.++|-+-+|.++.++..
T Consensus 25 vivAsvvGllVslvQA~TQ---------iQdQTl~f~iKLl~V~~tl~lt~ 66 (89)
T COG4794 25 VIVASVVGLLVSLVQALTQ---------IQDQTLPFGIKLLAVSATLFLTA 66 (89)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999994 44444457777777766666554
No 60
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=24.06 E-value=2.7e+02 Score=19.85 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=51.9
Q ss_pred hHHHHHHhhchhhHHHHh-hcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhccceEEeecccchHHHHHHHHHHHcCCC
Q 026532 108 SYIMESFKRSEPFTESLL-ERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRKRLWQLTPVYVSEWSKWLDEQKRTAGIS 186 (237)
Q Consensus 108 e~V~~al~~a~~~~~~L~-~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~~~~~a~Pv~~~~W~~wi~eq~~~Agv~ 186 (237)
......+.....+.+.+. ..++-+|-|.++. +.++..+........|..-|... .+..-+ .+.-++.
T Consensus 14 ~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l---~~~~~i~ 81 (95)
T PF13905_consen 14 PPCKKELPKLKELYKKYKKKDDVEFVFVSLDE--------DEEEWKKFLKKNNFPWYNVPFDD-DNNSEL---LKKYGIN 81 (95)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS--------SHHHHHHHHHTCTTSSEEEETTT-HHHHHH---HHHTT-T
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC--------CHHHHHHHHHhcCCCceEEeeCc-chHHHH---HHHCCCC
Confidence 446667777777788887 7889999998852 12344444554446798888773 333322 2233543
Q ss_pred CCCCeEEEEeeCCee
Q 026532 187 PESPVYLSLRLDGRV 201 (237)
Q Consensus 187 ~~~gvyi~lr~dGrV 201 (237)
. -|-++.|..||+|
T Consensus 82 ~-iP~~~lld~~G~I 95 (95)
T PF13905_consen 82 G-IPTLVLLDPDGKI 95 (95)
T ss_dssp S-SSEEEEEETTSBE
T ss_pred c-CCEEEEECCCCCC
Confidence 2 6899999999997
No 61
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=23.98 E-value=66 Score=28.73 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=31.2
Q ss_pred eEEEEecChhHHHH-HHhhchhhHHHHhhcCcEEEEEEeCC
Q 026532 99 RLVICSGPASYIME-SFKRSEPFTESLLERGVLVVSFTTDG 138 (237)
Q Consensus 99 RvVI~AG~~e~V~~-al~~a~~~~~~L~~r~VlVVPv~~~g 138 (237)
||.|++|+.+.=.+ |+..+....+.|.++|.=++++....
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~ 41 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDIDK 41 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeecC
Confidence 57788888777776 78888888888888888877777643
No 62
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=23.40 E-value=64 Score=26.66 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=25.5
Q ss_pred CCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026532 189 SPVYLSLRLDGRVRGSGVGYPPWNAFVAQL 218 (237)
Q Consensus 189 ~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL 218 (237)
-+..+.+..||+|+.+-.|..++.++.+.+
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l 167 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGF 167 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHH
Confidence 478999999999999999988888776554
No 63
>PF13244 DUF4040: Domain of unknown function (DUF4040)
Probab=23.34 E-value=1.7e+02 Score=21.43 Aligned_cols=44 Identities=30% Similarity=0.380 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHhhhccchhHHHH-HHHHHHH
Q 026532 5 LAFVASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAV-SLFAFLY 56 (237)
Q Consensus 5 ~af~aSa~iG~~i~~~rl~aal~G~~~a~~l~~~l~nlaI~~gav-~~~~~L~ 56 (237)
.+....+..|..+++.=+.-. |||+. +..+++..|.. ++|.+.+
T Consensus 19 ~avi~~~~~g~~~al~f~~l~------APDVA--lTe~~Vg~gl~~~l~~~al 63 (70)
T PF13244_consen 19 AAVIALGVFGFLIALLFVLLG------APDVA--LTEAAVGTGLTTVLFLLAL 63 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhC------CcHHH--HHHHHHHHhHHHHHHHHHH
Confidence 345566777777776666653 79988 88888887544 3333333
No 64
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=23.15 E-value=2.4e+02 Score=26.80 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCChHHhhhccchhHHHHHHHHHHHHHHhhhHHHHHHH
Q 026532 8 VASGSLGGLIAITQLIGALANPARAADVPEILKGLSIDVSAVSLFAFLYSRENKAKNAQLAR 69 (237)
Q Consensus 8 ~aSa~iG~~i~~~rl~aal~G~~~a~~l~~~l~nlaI~~gav~~~~~L~~~e~k~~~~qlar 69 (237)
..+-+||+|++..=.+-++.+..... .......+++=++.+.++.++|+-..=.+--|+..
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~-~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGS-VPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHHcccccccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 45778999999888888887766532 22223455555566666666776655555444433
No 65
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=23.08 E-value=2.6e+02 Score=20.49 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=19.6
Q ss_pred ceEEEEecChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCC
Q 026532 98 ARLVICSGPASYIMESFKRSEPFTESLLERGVLVVSFTTDG 138 (237)
Q Consensus 98 aRvVI~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g 138 (237)
...||++|++++-+..+-.+. +-..+.+...++ ++.++
T Consensus 3 g~rVli~GgR~~~D~~~i~~~-Ld~~~~~~~~~~--lvhGg 40 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAA-LDKVHARHPDMV--LVHGG 40 (71)
T ss_pred CCEEEEEECCccccHHHHHHH-HHHHHHhCCCEE--EEECC
Confidence 356888898888554332221 222344445544 44544
No 66
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=21.93 E-value=82 Score=27.55 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=27.1
Q ss_pred CCceeehhhh-cCcceEEEEec--ChhHHHHHHhhchhh
Q 026532 85 EKKIISVNNL-RGIARLVICSG--PASYIMESFKRSEPF 120 (237)
Q Consensus 85 ~~r~v~l~~L-R~~aRvVI~AG--~~e~V~~al~~a~~~ 120 (237)
+|++.....+ +...+++++|| +++.|.++++...|+
T Consensus 140 tG~~~dw~~l~~~~~~p~~LAGGi~peNv~~ai~~~~p~ 178 (210)
T PRK01222 140 TGKTFDWSLLPAGLAKPWILAGGLNPDNVAEAIRQVRPY 178 (210)
T ss_pred CCCccchHHhhhccCCCEEEECCCCHHHHHHHHHhcCCC
Confidence 4788888888 55556899999 588899998755544
No 67
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=21.82 E-value=1.8e+02 Score=24.46 Aligned_cols=116 Identities=11% Similarity=0.058 Sum_probs=66.1
Q ss_pred ceeehhhhcCcceEEEEe--cChhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchHHHHHHhhhhc--cce
Q 026532 87 KIISVNNLRGIARLVICS--GPASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESEEMKEFTRKRK--RLW 162 (237)
Q Consensus 87 r~v~l~~LR~~aRvVI~A--G~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~~--~~~ 162 (237)
+.+++++++|..-++... .--..+...+...+.+.++|.+.|+-|+-|..+.. +...++....+ ..+
T Consensus 22 ~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~---------~~~~~~~~~~~~~~~l 92 (187)
T TIGR03137 22 VEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTH---------FVHKAWHDTSEAIGKI 92 (187)
T ss_pred eEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCH---------HHHHHHHhhhhhccCc
Confidence 479999999875444442 33456677788888888899999999998887532 11111111100 011
Q ss_pred EEeecccchHHHHHHHHH-HHcCCCC-----CCCeEEEEeeCCeeecccCCC----CcHHHHhhc
Q 026532 163 QLTPVYVSEWSKWLDEQK-RTAGISP-----ESPVYLSLRLDGRVRGSGVGY----PPWNAFVAQ 217 (237)
Q Consensus 163 ~a~Pv~~~~W~~wi~eq~-~~Agv~~-----~~gvyi~lr~dGrVr~SG~G~----PpW~~~v~e 217 (237)
-.|+..+. +... +.-|+.. ..+..+++..||+|+..-... ++..++++.
T Consensus 93 -~fpllsD~-----~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~ 151 (187)
T TIGR03137 93 -TYPMLGDP-----TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRK 151 (187)
T ss_pred -ceeEEECC-----ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 13443332 1111 1125421 135689999999999986432 245555553
No 68
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=21.81 E-value=4.7e+02 Score=21.71 Aligned_cols=105 Identities=16% Similarity=0.242 Sum_probs=61.8
Q ss_pred ceeehhhhcCcceEEEE-ecChhHHHHHHhhchhhHHHHhhc-------CcEEEEEEeCCCCCCCCccchHHHHHHhhhh
Q 026532 87 KIISVNNLRGIARLVIC-SGPASYIMESFKRSEPFTESLLER-------GVLVVSFTTDGNIPSFEFEESEEMKEFTRKR 158 (237)
Q Consensus 87 r~v~l~~LR~~aRvVI~-AG~~e~V~~al~~a~~~~~~L~~r-------~VlVVPv~~~g~~~~~~f~~~~~~~~~~~~~ 158 (237)
..++|++|++..-++-. |.-=..+.+-+-..+.+.+++.+. ++-||-|..+.+ .+...++..+.
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~--------~~~~~~f~~~~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQS--------EQQQESFLKDM 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCC--------HHHHHHHHHHC
Confidence 34688999884333332 222344666665666666666543 688888876532 12334455544
Q ss_pred ccceEEeecccchHHHHHHHHHHH-cCCCCCCCeEEEEeeCCeeeccc
Q 026532 159 KRLWQLTPVYVSEWSKWLDEQKRT-AGISPESPVYLSLRLDGRVRGSG 205 (237)
Q Consensus 159 ~~~~~a~Pv~~~~W~~wi~eq~~~-Agv~~~~gvyi~lr~dGrVr~SG 205 (237)
...|..-|.. ++... ++.. -|+ .+=|..+.+..||+|..++
T Consensus 88 ~~~~~~~p~~-~~~~~----~l~~~y~v-~~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 88 PKKWLFLPFE-DEFRR----ELEAQFSV-EELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred CCCceeeccc-chHHH----HHHHHcCC-CCCCEEEEECCCCcEEeeC
Confidence 4458777765 33322 2222 244 2358899999999999774
No 69
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=21.54 E-value=3.1e+02 Score=28.07 Aligned_cols=18 Identities=11% Similarity=0.429 Sum_probs=12.2
Q ss_pred ehhhhcCcceEEEEecCh
Q 026532 90 SVNNLRGIARLVICSGPA 107 (237)
Q Consensus 90 ~l~~LR~~aRvVI~AG~~ 107 (237)
+.-++....|+++++|+.
T Consensus 371 ~~~~~~~~kkilvVC~sG 388 (639)
T PRK15083 371 VTNDLSHVRKIIVACDAG 388 (639)
T ss_pred cccchhccCEEEEECCCC
Confidence 444566677888888764
No 70
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=21.40 E-value=5.7e+02 Score=27.99 Aligned_cols=133 Identities=11% Similarity=0.148 Sum_probs=69.8
Q ss_pred hhcccceeEe--cCCceeeh-hhhcCcceEEEEecC-hhHHHHHHhhchhhHHHHhhcCcEEEEEEeCCCCCCCCccchH
Q 026532 74 ESLSNLKLRV--DEKKIISV-NNLRGIARLVICSGP-ASYIMESFKRSEPFTESLLERGVLVVSFTTDGNIPSFEFEESE 149 (237)
Q Consensus 74 e~L~rL~V~l--~~~r~v~l-~~LR~~aRvVI~AG~-~e~V~~al~~a~~~~~~L~~r~VlVVPv~~~g~~~~~~f~~~~ 149 (237)
..+-.++..+ .+++.+++ .+|++..-+|-.-.+ =..+..-+-..+.+.+++.+.++.||-|....-+.. ...+
T Consensus 395 ~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~---~~~~ 471 (1057)
T PLN02919 395 TKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNE---KDLE 471 (1057)
T ss_pred CcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccc---ccHH
Confidence 4444455544 24678887 588875433333322 223444444555666677778888888754210000 0112
Q ss_pred HHHHHhhhhccceEEeecccc-hHHHHHHHHHHHcCCCCCCCeEEEEeeCCeeecccCCCCcHHHHhhcC
Q 026532 150 EMKEFTRKRKRLWQLTPVYVS-EWSKWLDEQKRTAGISPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQL 218 (237)
Q Consensus 150 ~~~~~~~~~~~~~~a~Pv~~~-~W~~wi~eq~~~Agv~~~~gvyi~lr~dGrVr~SG~G~PpW~~~v~eL 218 (237)
+..++..+..-. +|+..+ ..+-| +.-|+ ..-|-++.+.+||+|..+=.|.-+..++.+.+
T Consensus 472 ~~~~~~~~~~i~---~pvv~D~~~~~~-----~~~~V-~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l 532 (1057)
T PLN02919 472 AIRNAVLRYNIS---HPVVNDGDMYLW-----RELGV-SSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLV 532 (1057)
T ss_pred HHHHHHHHhCCC---ccEEECCchHHH-----HhcCC-CccceEEEECCCCeEEEEEecccCHHHHHHHH
Confidence 223333322222 233322 11111 11243 22589999999999999888877766655443
No 71
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.73 E-value=1.5e+02 Score=25.87 Aligned_cols=63 Identities=13% Similarity=0.306 Sum_probs=45.3
Q ss_pred hhcccceeEecCCceeehhhhcCcceEEE-EecChhHHHHHHhhchhhHHHHhhcCcEEEEEEe
Q 026532 74 ESLSNLKLRVDEKKIISVNNLRGIARLVI-CSGPASYIMESFKRSEPFTESLLERGVLVVSFTT 136 (237)
Q Consensus 74 e~L~rL~V~l~~~r~v~l~~LR~~aRvVI-~AG~~e~V~~al~~a~~~~~~L~~r~VlVVPv~~ 136 (237)
.+.=.+.++=-+|..++|+++||..=+++ ||--=.+-+.--...+.+.+.+.++|..|+-++=
T Consensus 12 ~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPC 75 (171)
T KOG1651|consen 12 GSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPC 75 (171)
T ss_pred cceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecc
Confidence 33444555555689999999999865555 4443334443556788899999999999999986
Done!