BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026533
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 104 HVWRIENFSKLRSECCD---SQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADS 157
++W I NFS R E + S FSSG KW +++ PKG + +L++YL
Sbjct: 13 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLL---- 68
Query: 158 TTLTPGSKIYAEFTLRLLDQA--QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNG 215
P S++ A+F +L+ + + + + + F + G+ +++ + NG
Sbjct: 69 LVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRF-VQGKDWGFKKFIRRDFLLDEANG 127
Query: 216 CLVKDVCLVEAEVTV 230
L D + EV+V
Sbjct: 128 LLPDDKLTLFCEVSV 142
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 12 EVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLK-REWGFDEFIPIKAFNDASNGFLLE 70
EV A F+ +L+ KG AM ++R + ++ ++WGF +FI D +NG L +
Sbjct: 76 EVRAKFKFSILNA-KGE---ETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPD 131
Query: 71 DTCVFGAEVFVSKE 84
D EV V ++
Sbjct: 132 DKLTLFCEVSVVQD 145
>pdb|1CA4|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|B Chain B, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|C Chain C, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|D Chain D, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|E Chain E, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1CA4|F Chain F, Structure Of Tnf Receptor Associated Factor 2 (Traf2)
pdb|1D00|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|G Chain G, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D00|H Chain H, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 5-Residue Cd40 Peptide
pdb|1D0J|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
pdb|1D0J|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A M4-1bb Peptide
Length = 168
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 105 VWRIENFSKLRSECCDSQV---FSSG------DQKWQIQLYPKGRRHGTGTHLAVYLALA 155
+W+I +F++ R E ++ FS K +++Y G G GTHL+++ +
Sbjct: 22 IWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVM 81
Query: 156 ----DSTTLTPGSKIYAEFTLRLLDQAQARHI 183
D+ P ++ + TL LLDQ H+
Sbjct: 82 KGPNDALLRWPFNQ---KVTLMLLDQNNREHV 110
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 104 HVWRIENFSKLRSE---CCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADS 157
++W I NFS R E S FSSG KW +++ PKG + +L++YL
Sbjct: 9 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYL----L 64
Query: 158 TTLTPGSKIYAEFTLRLLDQA--QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNG 215
P S++ A+F +L+ + + + + + F + G+ +++ + NG
Sbjct: 65 LVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRF-VQGKDWGFKKFIRRGFLLDEANG 123
Query: 216 CLVKDVCLVEAEVTV 230
L D + EV+V
Sbjct: 124 LLPDDKLTLFCEVSV 138
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 12 EVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLK-REWGFDEFIPIKAFNDASNGFLLE 70
EV A F+ +L+ KG AM ++R + ++ ++WGF +FI D +NG L +
Sbjct: 72 EVRAKFKFSILNA-KGE---ETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPD 127
Query: 71 DTCVFGAEVFVSKERSTGKGE-CLSMIK 97
D EV V ++ G+ ++M+K
Sbjct: 128 DKLTLFCEVSVVQDSVNISGQNTMNMVK 155
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 104 HVWRIENFSKLRSECCD---SQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADS 157
++W I NFS R E + S FSSG KW +++ PKG + +L++YL
Sbjct: 13 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLL---- 68
Query: 158 TTLTPGSKIYAEFTLRLLDQA--QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNG 215
P S++ A+F +L+ + + + + + F + G+ +++ + NG
Sbjct: 69 LVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRF-VQGKDWGFKKFIRRGFLLDEANG 127
Query: 216 CLVKDVCLVEAEVTV 230
L D + EV+V
Sbjct: 128 LLPDDKLTLFCEVSV 142
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 12 EVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLK-REWGFDEFIPIKAFNDASNGFLLE 70
EV A F+ +L+ KG AM ++R + ++ ++WGF +FI D +NG L +
Sbjct: 76 EVRAKFKFSILNA-KGE---ETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPD 131
Query: 71 DTCVFGAEVFVSKE 84
D EV V ++
Sbjct: 132 DKLTLFCEVSVVQD 145
>pdb|1CZY|A Chain A, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1CZY|B Chain B, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1CZY|C Chain C, Crystal Structure Of The Complex Between The Traf Domain
Of Human Traf2 And An Lmp1 Binding Peptide
pdb|1D0A|A Chain A, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|B Chain B, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|C Chain C, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|D Chain D, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|E Chain E, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D0A|F Chain F, Structure Of Tnf Receptor Associated Factor 2 (Traf2) In
Complex With A Human Ox40 Peptide
pdb|1D01|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
pdb|1D01|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Human Cd30 Peptide
Length = 168
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 105 VWRIENFSKLRSECCDSQV---FSSG------DQKWQIQLYPKGRRHGTGTHLAVYLALA 155
+W+I +F + R E ++ FS K +++Y G G GTHL+++ +
Sbjct: 22 IWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVM 81
Query: 156 ----DSTTLTPGSKIYAEFTLRLLDQAQARHI 183
D+ P ++ + TL LLDQ H+
Sbjct: 82 KGPNDALLRWPFNQ---KVTLMLLDQNNREHV 110
>pdb|1CA9|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|D Chain D, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|E Chain E, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
pdb|1CA9|F Chain F, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A Peptide From Tnf-R2
Length = 192
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 105 VWRIENFSKLRSECCDSQV---FSSG------DQKWQIQLYPKGRRHGTGTHLAVYLALA 155
+W+I +F++ R E ++ FS K +++Y G G GTHL+++ +
Sbjct: 46 IWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVM 105
Query: 156 ----DSTTLTPGSKIYAEFTLRLLDQAQARHI 183
D+ P ++ + TL LLDQ H+
Sbjct: 106 KGPNDALLRWPFNQ---KVTLMLLDQNNREHV 134
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 104 HVWRIENFSKLRSECCD---SQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADS 157
++W I NFS R E + S FSSG KW +++ PKG + +L++YL
Sbjct: 14 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLL---- 69
Query: 158 TTLTPGSKIYAEFTLRLLDQA--QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNG 215
P S++ A+F +L+ + + + + + F + G+ +++ + NG
Sbjct: 70 LVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRF-VQGKDWGFKKFIRRDFLLDEANG 128
Query: 216 CLVKDVCLVEAEVTV 230
L D + EV+V
Sbjct: 129 LLPDDKLTLFCEVSV 143
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 12 EVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLK-REWGFDEFIPIKAFNDASNGFLLE 70
EV A F+ +L+ KG AM ++R + ++ ++WGF +FI D +NG L +
Sbjct: 77 EVRAKFKFSILNA-KGE---ETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPD 132
Query: 71 DTCVFGAEVFVSKE 84
D EV V ++
Sbjct: 133 DKLTLFCEVSVVQD 146
>pdb|1RF3|A Chain A, Structurally Distinct Recognition Motifs In Lymphotoxin-B
Receptor And Cd40 For Traf-Mediated Signaling
Length = 200
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 105 VWRIENFSKLRSECCD-------SQVFSSGDQKWQI--QLYPKGRRHGTGTHLAVYLAL- 154
+W+I ++ + + E SQ F +G +++ ++Y G G GTHL+++ +
Sbjct: 43 IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIM 102
Query: 155 -ADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKA 187
+ L P + TL L+DQ +R G A
Sbjct: 103 RGEYDALLPWP-FKQKVTLMLMDQGSSRRHLGDA 135
>pdb|4GHU|A Chain A, Crystal Structure Of Traf3CARDIF
Length = 198
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 105 VWRIENFSKLRSECCD-------SQVFSSGDQKWQI--QLYPKGRRHGTGTHLAVYLAL- 154
+W+I ++ + + E SQ F +G +++ ++Y G G GTHL+++ +
Sbjct: 43 IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIM 102
Query: 155 -ADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKA 187
+ L P + TL L+DQ +R G A
Sbjct: 103 RGEYDALLPWP-FKQKVTLMLMDQGSSRRHLGDA 135
>pdb|1KZZ|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1L0A|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1ZMS|A Chain A, Lmp1 Protein Binds To Traf3 As A Structural Cd40
pdb|2GKW|A Chain A, Key Contacts Promote Recongnito Of Baff-R By Traf3
Length = 192
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 105 VWRIENFSKLRSECCD-------SQVFSSGDQKWQI--QLYPKGRRHGTGTHLAVYLAL- 154
+W+I ++ + + E SQ F +G +++ ++Y G G GTHL+++ +
Sbjct: 43 IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIM 102
Query: 155 -ADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKA 187
+ L P + TL L+DQ +R G A
Sbjct: 103 RGEYDALLPWP-FKQKVTLMLMDQGSSRRHLGDA 135
>pdb|1CZZ|A Chain A, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
pdb|1CZZ|B Chain B, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
pdb|1CZZ|C Chain C, Structure Of Tnf Receptor Associated Factor 2 In Complex
With A 17-Residue Cd40 Peptide
Length = 187
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 105 VWRIENFSKLRSECCDSQV---FSSG------DQKWQIQLYPKGRRHGTGTHLAVYLALA 155
+W+I +F + R E ++ FS K +++Y G G GTHL+++ +
Sbjct: 41 IWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVM 100
Query: 156 ----DSTTLTPGSKIYAEFTLRLLDQAQARHI 183
D+ P ++ + TL LLDQ H+
Sbjct: 101 KGPNDALLRWPFNQ---KVTLMLLDQNNREHV 129
>pdb|1QSC|A Chain A, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
pdb|1QSC|B Chain B, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
pdb|1QSC|C Chain C, Crystal Structure Of The Traf Domain Of Traf2 In A Complex
With A Peptide From The Cd40 Receptor
Length = 191
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 105 VWRIENFSKLRSECCDSQV---FSSG------DQKWQIQLYPKGRRHGTGTHLAVYLALA 155
+W+I +F++ R E ++ FS K +++Y G G GTHL+++ +
Sbjct: 45 IWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKXCLRIYLNGDGTGRGTHLSLFFVVX 104
Query: 156 ----DSTTLTPGSKIYAEFTLRLLDQAQARHI 183
D+ P ++ + TL LLDQ H+
Sbjct: 105 KGPNDALLRWPFNQ---KVTLXLLDQNNREHV 133
>pdb|4G59|C Chain C, Crystal Structure Of The Murine Cytomegalovirus Mhc-I
Homolog M152 With Ligand Rae-1 Gamma
pdb|4G59|D Chain D, Crystal Structure Of The Murine Cytomegalovirus Mhc-I
Homolog M152 With Ligand Rae-1 Gamma
Length = 321
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 144 TGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKADFWFSASNPESGWARY 203
T LA ++LA+ + ++Y+ L++ R + G DF F S+P +GW
Sbjct: 203 TQVPLAYNISLANGVDIYKYMRMYSGGRLKVEAWLDLRDLNGSTDFAFVISSP-TGWYAT 261
Query: 204 VSFTYFNKPGNGCLVKDV 221
V ++ + + G L+ +
Sbjct: 262 VKYSEYPQQSPGMLLSSI 279
>pdb|1F3V|B Chain B, Crystal Structure Of The Complex Between The N-Terminal
Domain Of Tradd And The Traf Domain Of Traf2
Length = 171
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 105 VWRIENFSKLRSECCDSQV---FSSG------DQKWQIQLYPKGRRHGTGTHLAVYLALA 155
+W+I +F + R E ++ FS K +++Y G G GTHL+++ +
Sbjct: 25 IWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKXCLRIYLNGDGTGRGTHLSLFFVVX 84
Query: 156 ----DSTTLTPGSKIYAEFTLRLLDQAQARHI 183
D+ P ++ + TL LLDQ H+
Sbjct: 85 KGPNDALLRWPFNQ---KVTLXLLDQNNREHV 113
>pdb|1FLK|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLK|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
Length = 228
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 105 VWRIENFSKLRSECCD-------SQVFSSGDQKWQI--QLYPKGRRHGTGTHLAVYLAL- 154
+W+I ++ + + E SQ F +G +++ ++Y G G GTHL+++ +
Sbjct: 79 IWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIM 138
Query: 155 -ADSTTLTPGSKIYAEFTLRLLDQAQARHIAGKA 187
+ L P + TL L+DQ +R G A
Sbjct: 139 RGEYDALLPWP-FKQKVTLMLMDQGSSRRHLGDA 171
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 42 FHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGE 91
FH+ + +WGF F+ D GF+ +D F EVFV + G E
Sbjct: 111 FHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQADLDAGVSE 157
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 26/158 (16%)
Query: 101 SIKHVWRIENFSKLRSECCDSQVFSSGDQKWQI---------QLYPKGRRHGTGTHLAVY 151
S K +W++ ++ + E + S Q + + Y G G GTHL++Y
Sbjct: 23 SGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLY 82
Query: 152 LALA----DSTTLTPGSKIYAEFTLRLLDQA-QARHIAG--KADFWFSA-------SNPE 197
+ DS P TL LLDQ+ + HI KAD S+ N
Sbjct: 83 FVVMRGEFDSLLQWP---FRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIA 139
Query: 198 SGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 235
SG R+VS + N + D ++ V + + +
Sbjct: 140 SGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDLED 177
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 42 FHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTG 88
FH+ + +WGF F+ D GF+ +D F EVFV + G
Sbjct: 121 FHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQADAPHG 164
>pdb|3S5L|G Chain G, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|H Chain H, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 191
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 99 APSIKHVWRIENF----SKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLAL 154
A S + +WR NF L+ E D+ + DQK ++QL G + THL +L
Sbjct: 59 ADSRRRLWRQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSL 118
Query: 155 ADSTTLTPGS 164
+ PGS
Sbjct: 119 TLTLESPPGS 128
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 42 FHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTG 88
FH+ + +WGF F+ D GF+ +D F EVFV + G
Sbjct: 111 FHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQADAPHG 154
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 42 FHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTG 88
FH+ + +WGF F+ D GF+ +D F EVFV + G
Sbjct: 109 FHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQADAPHG 152
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 42 FHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTG 88
FH+ + +WGF F+ D GF+ +D F EVFV + G
Sbjct: 111 FHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQADAPGG 154
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 42 FHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTG 88
FH+ + +WGF F+ D GF+ +D F EVFV + G
Sbjct: 97 FHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQADAPHG 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,455,920
Number of Sequences: 62578
Number of extensions: 307418
Number of successful extensions: 563
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 44
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)