Query 026533
Match_columns 237
No_of_seqs 243 out of 1340
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:16:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 100.0 2.6E-29 5.7E-34 190.9 17.0 130 101-232 2-134 (137)
2 cd03775 MATH_Ubp21p Ubiquitin- 100.0 2.5E-28 5.5E-33 184.8 14.8 124 103-229 2-134 (134)
3 cd03774 MATH_SPOP Speckle-type 100.0 1.3E-27 2.8E-32 182.0 14.1 128 100-232 3-138 (139)
4 cd03773 MATH_TRIM37 Tripartite 99.9 1.3E-26 2.9E-31 174.9 12.9 124 99-229 2-130 (132)
5 cd00270 MATH_TRAF_C Tumor Necr 99.9 8E-26 1.7E-30 174.1 12.4 126 102-229 1-149 (149)
6 cd03780 MATH_TRAF5 Tumor Necro 99.9 1.8E-25 4E-30 170.9 13.2 127 102-228 1-147 (148)
7 cd03776 MATH_TRAF6 Tumor Necro 99.9 1.4E-25 2.9E-30 172.5 10.9 126 102-229 1-147 (147)
8 cd03779 MATH_TRAF1 Tumor Necro 99.9 8.4E-25 1.8E-29 166.6 13.3 127 102-228 1-146 (147)
9 cd03781 MATH_TRAF4 Tumor Necro 99.9 7.4E-25 1.6E-29 169.5 13.1 126 102-229 1-154 (154)
10 cd03777 MATH_TRAF3 Tumor Necro 99.9 1.4E-24 3E-29 171.8 14.5 129 99-229 36-184 (186)
11 cd03778 MATH_TRAF2 Tumor Necro 99.9 2.1E-24 4.5E-29 166.2 14.0 129 99-228 16-163 (164)
12 cd03771 MATH_Meprin Meprin fam 99.9 2.5E-24 5.5E-29 166.9 13.2 126 101-229 1-167 (167)
13 cd00121 MATH MATH (meprin and 99.9 8.9E-24 1.9E-28 156.7 15.5 125 102-229 1-126 (126)
14 PF00917 MATH: MATH domain; I 99.9 1.1E-22 2.3E-27 150.2 10.3 116 108-230 1-119 (119)
15 smart00061 MATH meprin and TRA 99.8 2E-18 4.3E-23 122.1 11.4 93 104-204 2-95 (95)
16 cd03783 MATH_Meprin_Alpha Mepr 99.8 2.5E-18 5.5E-23 132.0 10.6 127 101-229 1-167 (167)
17 cd03782 MATH_Meprin_Beta Mepri 99.8 3.7E-18 7.9E-23 130.5 11.0 125 101-228 1-166 (167)
18 COG5077 Ubiquitin carboxyl-ter 99.5 1E-14 2.2E-19 132.4 7.0 131 99-233 36-173 (1089)
19 cd03772 MATH_HAUSP Herpesvirus 99.5 7.8E-14 1.7E-18 105.8 9.1 75 7-84 61-135 (137)
20 cd03775 MATH_Ubp21p Ubiquitin- 99.5 1E-13 2.2E-18 104.7 7.5 71 7-80 60-134 (134)
21 cd03774 MATH_SPOP Speckle-type 99.3 2.3E-12 5E-17 97.9 7.1 72 10-84 68-139 (139)
22 PF00917 MATH: MATH domain; I 99.0 4.6E-10 9.9E-15 82.3 6.2 66 9-81 54-119 (119)
23 KOG1987 Speckle-type POZ prote 99.0 4.3E-11 9.3E-16 102.1 -1.4 218 10-232 54-295 (297)
24 cd00270 MATH_TRAF_C Tumor Necr 98.9 4.7E-09 1E-13 80.6 6.2 71 8-80 70-149 (149)
25 cd03773 MATH_TRIM37 Tripartite 98.9 4.4E-09 9.5E-14 79.0 5.6 65 10-80 64-130 (132)
26 COG5077 Ubiquitin carboxyl-ter 98.8 1.5E-09 3.1E-14 99.4 2.7 73 10-85 99-174 (1089)
27 cd00121 MATH MATH (meprin and 98.8 1.4E-08 3E-13 74.6 7.4 66 8-79 59-125 (126)
28 KOG1987 Speckle-type POZ prote 98.8 9.2E-08 2E-12 81.6 12.3 121 104-235 6-130 (297)
29 cd03779 MATH_TRAF1 Tumor Necro 98.7 5.9E-08 1.3E-12 74.1 6.2 69 10-79 72-146 (147)
30 cd03776 MATH_TRAF6 Tumor Necro 98.6 5.1E-08 1.1E-12 74.7 5.1 71 8-80 70-147 (147)
31 cd03780 MATH_TRAF5 Tumor Necro 98.6 8.4E-08 1.8E-12 73.5 5.6 70 9-79 71-147 (148)
32 cd03781 MATH_TRAF4 Tumor Necro 98.4 3.8E-07 8.2E-12 70.5 5.5 69 9-79 71-153 (154)
33 KOG1863 Ubiquitin carboxyl-ter 98.3 4.7E-07 1E-11 89.4 5.2 130 101-235 26-156 (1093)
34 cd03777 MATH_TRAF3 Tumor Necro 98.2 2.7E-06 5.8E-11 67.6 6.3 70 9-80 109-184 (186)
35 cd03778 MATH_TRAF2 Tumor Necro 98.2 4.2E-06 9E-11 64.9 6.7 70 9-79 89-163 (164)
36 cd03771 MATH_Meprin Meprin fam 98.0 1.7E-05 3.8E-10 61.8 6.4 71 7-79 66-166 (167)
37 smart00061 MATH meprin and TRA 97.7 9.1E-05 2E-09 51.5 5.6 43 7-55 53-95 (95)
38 KOG1863 Ubiquitin carboxyl-ter 97.4 5.9E-05 1.3E-09 74.8 2.0 76 9-87 82-157 (1093)
39 KOG0297 TNF receptor-associate 96.9 0.00071 1.5E-08 60.0 3.2 80 98-177 276-365 (391)
40 cd03783 MATH_Meprin_Alpha Mepr 96.8 0.0017 3.7E-08 50.4 3.8 32 46-79 135-166 (167)
41 cd03782 MATH_Meprin_Beta Mepri 96.4 0.005 1.1E-07 47.6 4.2 69 9-79 68-166 (167)
42 PF08922 DUF1905: Domain of un 26.9 1.1E+02 0.0025 20.4 3.6 16 125-140 38-53 (80)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.97 E-value=2.6e-29 Score=190.94 Aligned_cols=130 Identities=16% Similarity=0.309 Sum_probs=110.0
Q ss_pred CCeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcC--CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCC
Q 026533 101 SIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRH--GTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQA 178 (237)
Q Consensus 101 ~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~--~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~~ 178 (237)
.++|+|+|+|||.+ ++.++|+.|.+||++|+|++||+|... +..++||+||.|.+. .....|++.|+|+|+|+||.
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~-~~~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCc-CCCCCCeEEEEEEEEEEcCC
Confidence 57899999999999 688999999999999999999999654 234899999999763 33458999999999999998
Q ss_pred CC-ceeeecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEe
Q 026533 179 QA-RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG 232 (237)
Q Consensus 179 ~~-~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~ 232 (237)
+. .+......+.|+.....|||++||+|++|+++++|||+||+|+|||+|+|=.
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 53 3333445567876667999999999999987779999999999999998854
No 2
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.96 E-value=2.5e-28 Score=184.79 Aligned_cols=124 Identities=22% Similarity=0.435 Sum_probs=106.4
Q ss_pred eEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCC----CCCCCeEEEEEEEEEEeCC
Q 026533 103 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT----LTPGSKIYAEFTLRLLDQA 178 (237)
Q Consensus 103 ~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~----~~~~~~~~~~~~l~l~n~~ 178 (237)
+|+|+|+|||.+ ++.+.|++|.+|||+|+|.+||+|+.. .+++|+||.+.+.+. ++++|.+.|+|+|+|+||.
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~ 78 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG 78 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence 699999999997 578999999999999999999999865 689999999976443 2568999999999999997
Q ss_pred CCce-eeecceeecCCCCccccccceeeccccCCC----CCceeeCCEEEEEEEEE
Q 026533 179 QARH-IAGKADFWFSASNPESGWARYVSFTYFNKP----GNGCLVKDVCLVEAEVT 229 (237)
Q Consensus 179 ~~~~-~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~----~~gfl~~D~l~ie~~v~ 229 (237)
++.. ......+.|+....+|||.+||++++|++| .+|||+||+|+|+|.|.
T Consensus 79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 6442 334556899877789999999999999954 57999999999999873
No 3
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.95 E-value=1.3e-27 Score=182.04 Aligned_cols=128 Identities=27% Similarity=0.484 Sum_probs=107.4
Q ss_pred CCCeEEEEEccccccC---CceeecccEEeCCe---EEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEE
Q 026533 100 PSIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLR 173 (237)
Q Consensus 100 ~~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~ 173 (237)
...+|+|+|+|||.++ ++.+.|++|.+||+ +|+|++||+|...+..+|+||||++.+. ..+++.|+|+|+
T Consensus 3 ~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~----~~~~v~a~f~~~ 78 (139)
T cd03774 3 VKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFS 78 (139)
T ss_pred eEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC----CCCcEEEEEEEE
Confidence 3468999999999874 67899999999995 9999999999876567899999999753 245799999999
Q ss_pred EEeCCCCcee--eecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEe
Q 026533 174 LLDQAQARHI--AGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG 232 (237)
Q Consensus 174 l~n~~~~~~~--~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~ 232 (237)
|+||.+.... .....+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus 79 l~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 79 ILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EEecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 9999876542 2223466764 47899999999999987778999999999999999985
No 4
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.94 E-value=1.3e-26 Score=174.88 Aligned_cols=124 Identities=23% Similarity=0.435 Sum_probs=104.0
Q ss_pred CCCCeEEEEEccccccC--CceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEe
Q 026533 99 APSIKHVWRIENFSKLR--SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLD 176 (237)
Q Consensus 99 ~~~~~~~w~I~nfs~l~--~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n 176 (237)
++.++++|+|.|||.++ ++.++|++|.+||++|+|++||+|...+.++|||+||++.++ ..+.+.++|+|+|+|
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~lln 77 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVH 77 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEc
Confidence 34678999999999985 678999999999999999999999887667899999998763 246788899999999
Q ss_pred CC-CCceeeecceeecCCCCccccccceeeccccCCCCCceeeC--CEEEEEEEEE
Q 026533 177 QA-QARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVK--DVCLVEAEVT 229 (237)
Q Consensus 177 ~~-~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~--D~l~ie~~v~ 229 (237)
|. ...+......+.|.. ..+|||.+||++++|++ +|||+| |+|+|+|.|+
T Consensus 78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 95 333444445567865 46799999999999986 799999 9999999985
No 5
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.93 E-value=8e-26 Score=174.13 Aligned_cols=126 Identities=24% Similarity=0.407 Sum_probs=102.6
Q ss_pred CeEEEEEccccccC-------CceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEEEEE
Q 026533 102 IKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAEFT 171 (237)
Q Consensus 102 ~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~~~~ 171 (237)
++|+|+|.+||.++ ++.++|+.|.+| ||+|+|++||+|...+.++||||||++.+++.. ...|++.++|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 57999999999974 358999999999 999999999999876667899999999875442 35799999999
Q ss_pred EEEEeCCCC---ceeeec-----ceeecC-----CCCccccccceeeccccCCCCCceeeCCEEEEEEEEE
Q 026533 172 LRLLDQAQA---RHIAGK-----ADFWFS-----ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 229 (237)
Q Consensus 172 l~l~n~~~~---~~~~~~-----~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~ 229 (237)
|+|+||.++ .+.... ....|. ....+|||.+||++++|++ .|||+||+|+|+|+|.
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence 999999873 222111 123454 1357899999999999986 5899999999999983
No 6
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.93 E-value=1.8e-25 Score=170.89 Aligned_cols=127 Identities=24% Similarity=0.372 Sum_probs=104.5
Q ss_pred CeEEEEEccccccC-----Cc--eeecccE--EeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEEEEE
Q 026533 102 IKHVWRIENFSKLR-----SE--CCDSQVF--SSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYAEFT 171 (237)
Q Consensus 102 ~~~~w~I~nfs~l~-----~~--~~~S~~f--~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~~~~ 171 (237)
|.+.|+|.+||.++ +. .+.|++| .++||+|+|++||||.+.+.++|+|+||++..++..+ ..|++.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 57999999999985 44 7999999 8999999999999999887889999999998754332 4799999999
Q ss_pred EEEEeCCCCc-e-e-e-e--cceeecCCC----CccccccceeeccccCCCCCceeeCCEEEEEEEE
Q 026533 172 LRLLDQAQAR-H-I-A-G--KADFWFSAS----NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEV 228 (237)
Q Consensus 172 l~l~n~~~~~-~-~-~-~--~~~~~F~~~----~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v 228 (237)
|.|+||.+.. + . . . .....|.+. +.+||+++||++++|+.++.+||.||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 9999997542 2 1 1 1 113568654 5579999999999998644699999999999987
No 7
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.93 E-value=1.4e-25 Score=172.46 Aligned_cols=126 Identities=22% Similarity=0.292 Sum_probs=101.3
Q ss_pred CeEEEEEccccccC-----Cc--eeecccEEe--CCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCC-CCCCCeEEEEEE
Q 026533 102 IKHVWRIENFSKLR-----SE--CCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT-LTPGSKIYAEFT 171 (237)
Q Consensus 102 ~~~~w~I~nfs~l~-----~~--~~~S~~f~~--gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~-~~~~~~~~~~~~ 171 (237)
+.|+|+|.+||.++ ++ .+.|+.|.+ |||+|+|++||+|..++..+|||+||++.+++. ...+|++.++++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 57999999999764 34 488999985 799999999999998777789999999987543 234799999999
Q ss_pred EEEEeCCCCc-eee-----ecceeecCC-----CCccccccceeeccccCCCCCceeeCCEEEEEEEEE
Q 026533 172 LRLLDQAQAR-HIA-----GKADFWFSA-----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 229 (237)
Q Consensus 172 l~l~n~~~~~-~~~-----~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~ 229 (237)
|+|+||.+.. +.. ......|.+ .+.+|||.+||++++|+. .+||+||+|+|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 9999998632 211 112245653 346799999999999986 6899999999999984
No 8
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.93 E-value=8.4e-25 Score=166.59 Aligned_cols=127 Identities=21% Similarity=0.315 Sum_probs=102.2
Q ss_pred CeEEEEEccccccC-----C--ceeecccEEe--CCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEEEEE
Q 026533 102 IKHVWRIENFSKLR-----S--ECCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAEFT 171 (237)
Q Consensus 102 ~~~~w~I~nfs~l~-----~--~~~~S~~f~~--gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~~~~ 171 (237)
|.+.|+|+||+++. + ..++||.|.. .||+|+|++||||.+.+.++|+|+||++..++.. -..|++.++++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 57999999999763 2 3699999975 5999999999999998778899999999875321 23799999999
Q ss_pred EEEEeCCCCcee--eecc---eeecC----CCCccccccceeeccccCCCCCceeeCCEEEEEEEE
Q 026533 172 LRLLDQAQARHI--AGKA---DFWFS----ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEV 228 (237)
Q Consensus 172 l~l~n~~~~~~~--~~~~---~~~F~----~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v 228 (237)
|.|+||.+..+. .... ...|+ ..+.+||+++||++++|+.+..+||+||+++|+|+|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 999999865442 1111 25686 345579999999999998633499999999999998
No 9
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.92 E-value=7.4e-25 Score=169.46 Aligned_cols=126 Identities=23% Similarity=0.335 Sum_probs=102.9
Q ss_pred CeEEEEEccccccC-------CceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEEEEE
Q 026533 102 IKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYAEFT 171 (237)
Q Consensus 102 ~~~~w~I~nfs~l~-------~~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~~~~ 171 (237)
|.|.|+|.+||.++ ++.+.|+.|.+| ||+|+|++||+|..++.++|+|+||++.+++..+ ..|++.++++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 57999999999875 257999999999 9999999999999887788999999998855433 4899999999
Q ss_pred EEEEeCCCC--c---eeee-----cceeecCC--------CCccccccceeeccccCCCCCceeeCCEEEEEEEEE
Q 026533 172 LRLLDQAQA--R---HIAG-----KADFWFSA--------SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 229 (237)
Q Consensus 172 l~l~n~~~~--~---~~~~-----~~~~~F~~--------~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~ 229 (237)
|+|+||.+. . +... .....|++ .+.+||+.+||++++|+. ++||+||+|+|+|+|.
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence 999999864 1 1111 11234542 345799999999999986 7899999999999983
No 10
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.92 E-value=1.4e-24 Score=171.75 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=105.4
Q ss_pred CCCCeEEEEEccccccC-----Cc--eeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEE
Q 026533 99 APSIKHVWRIENFSKLR-----SE--CCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYA 168 (237)
Q Consensus 99 ~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~ 168 (237)
..+|.|.|+|.+||..+ ++ .++|++|.+| ||+|+|++||+|.+.+.++|+|+||++..++.. -..|++.+
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence 44799999999999874 34 7999999999 999999999999988778999999999875432 23799999
Q ss_pred EEEEEEEeCCCC-cee-----eecceeecCC-C---CccccccceeeccccCCCCCceeeCCEEEEEEEEE
Q 026533 169 EFTLRLLDQAQA-RHI-----AGKADFWFSA-S---NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 229 (237)
Q Consensus 169 ~~~l~l~n~~~~-~~~-----~~~~~~~F~~-~---~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~ 229 (237)
+++|.|+||.+. .+. .......|.+ . +.+||+++||++++|+. ++||+||+++|+|.|.
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence 999999999752 111 1112355762 2 45799999999999986 7899999999999986
No 11
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.92 E-value=2.1e-24 Score=166.24 Aligned_cols=129 Identities=22% Similarity=0.338 Sum_probs=107.9
Q ss_pred CCCCeEEEEEccccccC-----C--ceeecccEEe--CCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 026533 99 APSIKHVWRIENFSKLR-----S--ECCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA 168 (237)
Q Consensus 99 ~~~~~~~w~I~nfs~l~-----~--~~~~S~~f~~--gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~ 168 (237)
...|.++|+|.||+++. + ..++||.|.. +||+|+|++||+|++.+++.|||+|+++.+++.++ ..|++..
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 45799999999999975 2 3789999964 79999999999999988889999999999988876 7999999
Q ss_pred EEEEEEEeCCCCceeeecce-----eecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEE
Q 026533 169 EFTLRLLDQAQARHIAGKAD-----FWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEV 228 (237)
Q Consensus 169 ~~~l~l~n~~~~~~~~~~~~-----~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v 228 (237)
+++|.|+||.++.|...... ..|.+ .+.+|||+.|+++++|..+ ++||+||+|.|+|.|
T Consensus 96 ~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 99999999987766532211 13532 4567999999999999864 599999999999987
No 12
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.92 E-value=2.5e-24 Score=166.91 Aligned_cols=126 Identities=22% Similarity=0.388 Sum_probs=99.4
Q ss_pred CCeEEEEEccccccC-----CceeecccE-EeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCe-EEEEEEE
Q 026533 101 SIKHVWRIENFSKLR-----SECCDSQVF-SSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSK-IYAEFTL 172 (237)
Q Consensus 101 ~~~~~w~I~nfs~l~-----~~~~~S~~f-~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~-~~~~~~l 172 (237)
++.|+|+|.|||.++ ++.++|++| .+|||+|+|++||+|... .++||||||++.+++.. ..+|+ +.++++|
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~ 79 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM 79 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence 468999999999985 458999998 999999999999999987 78999999999875442 35799 5899999
Q ss_pred EEEeCCCC----cee----eecc--------eeecCC-----------------CCccccccceeeccccCCCCCceeeC
Q 026533 173 RLLDQAQA----RHI----AGKA--------DFWFSA-----------------SNPESGWARYVSFTYFNKPGNGCLVK 219 (237)
Q Consensus 173 ~l~n~~~~----~~~----~~~~--------~~~F~~-----------------~~~~~G~~~fi~~~~L~~~~~gfl~~ 219 (237)
+|+||... .+. +... ...|.+ .+.+|||++||++++|+. .+||+|
T Consensus 80 ~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~ 157 (167)
T cd03771 80 TLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG 157 (167)
T ss_pred EEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence 99999731 111 1000 011221 235899999999999997 679999
Q ss_pred CEEEEEEEEE
Q 026533 220 DVCLVEAEVT 229 (237)
Q Consensus 220 D~l~ie~~v~ 229 (237)
|+|.|+++++
T Consensus 158 dtl~i~~~~~ 167 (167)
T cd03771 158 DDLIILLDFE 167 (167)
T ss_pred CEEEEEEEeC
Confidence 9999999873
No 13
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.92 E-value=8.9e-24 Score=156.74 Aligned_cols=125 Identities=31% Similarity=0.548 Sum_probs=104.2
Q ss_pred CeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCc
Q 026533 102 IKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQAR 181 (237)
Q Consensus 102 ~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~~~~~ 181 (237)
++|+|+|.+|+...++.++|+.|.++|+.|+|++||+|... ..++||+||+|.+.......|++.++++|+|+++++.+
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGK 79 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCc
Confidence 37999999999966789999999999999999999999765 56899999999875544467999999999999998555
Q ss_pred eeeecceeecC-CCCccccccceeeccccCCCCCceeeCCEEEEEEEEE
Q 026533 182 HIAGKADFWFS-ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 229 (237)
Q Consensus 182 ~~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~ 229 (237)
+........|. ....+|||.+||++++|++ ..+++||+|+|+|+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 80 SLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred cceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 44444444553 4568999999999999997 3349999999999984
No 14
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.89 E-value=1.1e-22 Score=150.17 Aligned_cols=116 Identities=35% Similarity=0.580 Sum_probs=95.8
Q ss_pred EccccccC-C-ceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEEEEEEEEEeCCCCceee
Q 026533 108 IENFSKLR-S-ECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYAEFTLRLLDQAQARHIA 184 (237)
Q Consensus 108 I~nfs~l~-~-~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~~~~l~l~n~~~~~~~~ 184 (237)
|+|||+++ + ..+.|+.|.++|++|+|.+||+|+ ++++++||+|..++... ..|++.++++++|+++.++....
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 76 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK 76 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence 78999997 3 344558999999999999999976 57999999999865543 68999999999999998876432
Q ss_pred ecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEE
Q 026533 185 GKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTV 230 (237)
Q Consensus 185 ~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v 230 (237)
....+.|+.. .+|||.+||++++|.++ .|++||+|+|+|+|+|
T Consensus 77 ~~~~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 77 RIKSHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEECEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred eeeeeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 2124788754 78999999999999974 3899999999999987
No 15
>smart00061 MATH meprin and TRAF homology.
Probab=99.79 E-value=2e-18 Score=122.14 Aligned_cols=93 Identities=24% Similarity=0.338 Sum_probs=79.9
Q ss_pred EEEEEccccccC-CceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCce
Q 026533 104 HVWRIENFSKLR-SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARH 182 (237)
Q Consensus 104 ~~w~I~nfs~l~-~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~ 182 (237)
++|+|+||+.+. ++.++|+.|.+||++|+|++||+ ++|||+||.|.+....+..|++.|+++++|+||++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~ 75 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL 75 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence 579999999985 78899999999999999999998 58999999998765544589999999999999998765
Q ss_pred eeecceeecCCCCcccccccee
Q 026533 183 IAGKADFWFSASNPESGWARYV 204 (237)
Q Consensus 183 ~~~~~~~~F~~~~~~~G~~~fi 204 (237)
. ....+.|.. ..+|||.+||
T Consensus 76 ~-~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 76 S-KKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred e-eeeeEEEcC-CCccceeeEC
Confidence 3 445678886 6789999886
No 16
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.77 E-value=2.5e-18 Score=132.04 Aligned_cols=127 Identities=18% Similarity=0.343 Sum_probs=98.9
Q ss_pred CCeEEEEEccccccC-----CceeecccEEe-CCeEEEEEEEeCCCcC-CCCCeEEEEEEecCCCCCC-CCCeE-EEEEE
Q 026533 101 SIKHVWRIENFSKLR-----SECCDSQVFSS-GDQKWQIQLYPKGRRH-GTGTHLAVYLALADSTTLT-PGSKI-YAEFT 171 (237)
Q Consensus 101 ~~~~~w~I~nfs~l~-----~~~~~S~~f~~-gg~~W~l~vyp~G~~~-~~~~~lslyL~~~~~~~~~-~~~~~-~~~~~ 171 (237)
++.+.|+|.||+++. +..++||.|.. .|++.+|++||+|.+. +.+.|+|||+++..++..+ ..|++ .-+++
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 357899999999874 45799999976 5999999999999874 5678999999999877643 58995 56899
Q ss_pred EEEEeCCC----Ccee----eecc---------eeecCC--------------CCccccccceeeccccCCCCCceeeCC
Q 026533 172 LRLLDQAQ----ARHI----AGKA---------DFWFSA--------------SNPESGWARYVSFTYFNKPGNGCLVKD 220 (237)
Q Consensus 172 l~l~n~~~----~~~~----~~~~---------~~~F~~--------------~~~~~G~~~fi~~~~L~~~~~gfl~~D 220 (237)
|.|+||+. +.+. +... ...|.+ .+.++||++||+++.|+. ++||+||
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdD 158 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKND 158 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCC
Confidence 99999964 1111 1111 011332 245899999999999997 8999999
Q ss_pred EEEEEEEEE
Q 026533 221 VCLVEAEVT 229 (237)
Q Consensus 221 ~l~ie~~v~ 229 (237)
+|.|.++++
T Consensus 159 tlfI~~~~~ 167 (167)
T cd03783 159 DLIIFVDFE 167 (167)
T ss_pred eEEEEEecC
Confidence 999998863
No 17
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.77 E-value=3.7e-18 Score=130.49 Aligned_cols=125 Identities=21% Similarity=0.269 Sum_probs=99.5
Q ss_pred CCeEEEEEccccccC-----CceeecccEE-eCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEE-EEEEE
Q 026533 101 SIKHVWRIENFSKLR-----SECCDSQVFS-SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIY-AEFTL 172 (237)
Q Consensus 101 ~~~~~w~I~nfs~l~-----~~~~~S~~f~-~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~-~~~~l 172 (237)
++.+.|+|.||+++. ...++||+|. ..||+.+|++||||.+.+ ++|||||+++..++..+ ..|++. -+++|
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~ 79 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATM 79 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence 357899999999975 4679999994 589999999999999875 68999999999887643 489999 89999
Q ss_pred EEEeCCC----Cceeee----c-----c-eeec--CCC-----------------CccccccceeeccccCCCCCceeeC
Q 026533 173 RLLDQAQ----ARHIAG----K-----A-DFWF--SAS-----------------NPESGWARYVSFTYFNKPGNGCLVK 219 (237)
Q Consensus 173 ~l~n~~~----~~~~~~----~-----~-~~~F--~~~-----------------~~~~G~~~fi~~~~L~~~~~gfl~~ 219 (237)
.|+||+. +.+... . . ...| .+. +.++||+.||++++|+. +.||+|
T Consensus 80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikd 157 (167)
T cd03782 80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKG 157 (167)
T ss_pred EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccC
Confidence 9999974 222211 0 0 0124 221 57899999999999997 789999
Q ss_pred CEEEEEEEE
Q 026533 220 DVCLVEAEV 228 (237)
Q Consensus 220 D~l~ie~~v 228 (237)
|++.|-+++
T Consensus 158 D~ifi~~~~ 166 (167)
T cd03782 158 DDVIFLLTM 166 (167)
T ss_pred CeEEEEEec
Confidence 999998876
No 18
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1e-14 Score=132.39 Aligned_cols=131 Identities=20% Similarity=0.409 Sum_probs=108.4
Q ss_pred CCCCeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCC--C-CCCCeEEEEEEEEEE
Q 026533 99 APSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT--L-TPGSKIYAEFTLRLL 175 (237)
Q Consensus 99 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~--~-~~~~~~~~~~~l~l~ 175 (237)
....+++|+|+++|.+. +.++||+|.+||+.|+|.++|+|+.. ...|+||.....+. . ...|.|+|+|.|.+-
T Consensus 36 ~~~~sftW~vk~wsel~-~k~~Sp~F~vg~~twki~lfPqG~nq---~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is 111 (1089)
T COG5077 36 LLEMSFTWKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQ---CNVSVYLEYEPQELEETGGKYYDCCAQFAFDIS 111 (1089)
T ss_pred HhhcccceecCChhhhh-hhccCCcccccCeeEEEEEecccCCc---cccEEEEEeccchhhhhcCcchhhhhheeeecC
Confidence 44678999999999997 47899999999999999999999864 23899999875321 1 234899999999998
Q ss_pred eCCCCce-eeecceeecCCCCccccccceeeccccCCCCCc---eeeCCEEEEEEEEEEEee
Q 026533 176 DQAQARH-IAGKADFWFSASNPESGWARYVSFTYFNKPGNG---CLVKDVCLVEAEVTVHGI 233 (237)
Q Consensus 176 n~~~~~~-~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~g---fl~~D~l~ie~~v~v~~~ 233 (237)
++..+.. ......++|+....+|||.+|+.+..|..|+.| |+.+|++.|.|.|+|++.
T Consensus 112 ~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 112 NPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred CCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 8776432 234567899988899999999999999987655 678999999999999986
No 19
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.51 E-value=7.8e-14 Score=105.79 Aligned_cols=75 Identities=19% Similarity=0.358 Sum_probs=63.4
Q ss_pred CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeec
Q 026533 7 LQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE 84 (237)
Q Consensus 7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~ 84 (237)
..++|+++|+|+|.|+|+.++..+..+. ..|+|.....+|||++||+|++|+++.+|||+||+|+|+|+|.+-.+
T Consensus 61 ~~~~w~i~a~~~~~l~~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~~ 135 (137)
T cd03772 61 DSTSWSCHAQAVLRIINYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADAP 135 (137)
T ss_pred CCCCCeEEEEEEEEEEcCCCCcccEEEe---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeCC
Confidence 3458999999999999998654444443 45789877789999999999999988899999999999999987653
No 20
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.48 E-value=1e-13 Score=104.74 Aligned_cols=71 Identities=24% Similarity=0.478 Sum_probs=61.2
Q ss_pred CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccC----CCCeeecCeEEEEEEEE
Q 026533 7 LQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDA----SNGFLLEDTCVFGAEVF 80 (237)
Q Consensus 7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~----~~gfl~~d~~~~~~~v~ 80 (237)
++++|.++|+|+|.|+||.++..+..+. +.|+|+....+|||.+||++++|++| .+|||+||+++|+|+|+
T Consensus 60 ~~~~~~v~a~f~~~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 60 LDEDWSVCAQFALVISNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred CCCCCeEEEEEEEEEEcCCCCccceEcc---ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 5789999999999999998766554443 67999987789999999999999965 67999999999999873
No 21
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.35 E-value=2.3e-12 Score=97.92 Aligned_cols=72 Identities=28% Similarity=0.465 Sum_probs=60.8
Q ss_pred CcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeec
Q 026533 10 GWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE 84 (237)
Q Consensus 10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~ 84 (237)
.+.++|+|+|.|+||++++......+ ..++|.. ..+|||.+||++++|+++.+|||.||+++|+|+|.|+++
T Consensus 68 ~~~v~a~f~~~l~n~~~~~~~~~~~~--~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~ 139 (139)
T cd03774 68 KSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 139 (139)
T ss_pred CCcEEEEEEEEEEecCCCeeeeeccc--CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence 46899999999999987765433332 4578876 579999999999999988899999999999999999853
No 22
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.04 E-value=4.6e-10 Score=82.34 Aligned_cols=66 Identities=29% Similarity=0.539 Sum_probs=55.1
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEE
Q 026533 9 HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV 81 (237)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v 81 (237)
.+|++.|++++.|+|+.++...... ..++|+.. ..||+.+||++++|.++. ||.||+++|+|+|.|
T Consensus 54 ~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 54 LEWSIEAEFRFRLLNQNGKSISKRI----KSHSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp SSSSEEEEEEEEEE-TTSCEEEEEE----ECEEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred cceeeeEEEEEEEecCCCCcceeee----eeeEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence 6999999999999999888744221 24788774 899999999999999755 999999999999976
No 23
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.99 E-value=4.3e-11 Score=102.15 Aligned_cols=218 Identities=22% Similarity=0.278 Sum_probs=147.2
Q ss_pred CcEEEEEEEEEEEeCCCCce-EEEe-cccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeecccC
Q 026533 10 GWEVYAVFRLFLLDQNKGNF-LILQ-DAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERST 87 (237)
Q Consensus 10 ~w~~~a~f~~~l~n~~~~~~-~~~~-~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~~~~ 87 (237)
+|+++|+++|+++|+...++ +..+ .. ...+|......||+..++++..+.++..||+.+..+++.+.+.|.+..
T Consensus 54 ~~~~~~~~~l~v~n~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~-- 129 (297)
T KOG1987|consen 54 GWERYAKLRLTVVNQKSEKYLSTVEEGF--SWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM-- 129 (297)
T ss_pred CcceeEEEEEEEccCCCcceeeeeeeeE--EeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee--
Confidence 99999999999999999987 6653 21 233444447899999999999999999999999888888888777766
Q ss_pred Cccceeee--------eecCCC----CeEEEEEccccccCC----ceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEE
Q 026533 88 GKGECLSM--------IKDAPS----IKHVWRIENFSKLRS----ECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVY 151 (237)
Q Consensus 88 ~~~e~~~~--------~~~~~~----~~~~w~I~nfs~l~~----~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lsly 151 (237)
.+.+.+.. +.+... ..|+|.+.+++..+. ....+..|..++..|++.++|.+........++.+
T Consensus 130 ~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~ 209 (297)
T KOG1987|consen 130 GKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQS 209 (297)
T ss_pred cccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhccc
Confidence 55554432 333444 889999999998872 36778999999999999999999876555677888
Q ss_pred EEecCCCCC--CCCCeEEEEEEEEEEeCCCC--cee-eec-ceeecCCCCccccccceeeccccCCCCCceeeCCEEEEE
Q 026533 152 LALADSTTL--TPGSKIYAEFTLRLLDQAQA--RHI-AGK-ADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVE 225 (237)
Q Consensus 152 L~~~~~~~~--~~~~~~~~~~~l~l~n~~~~--~~~-~~~-~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie 225 (237)
|...+...+ ...-.+++......+|+... ++. .+. ...+.......+ ..++.++.++.....+++.++++.++
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (297)
T KOG1987|consen 210 LQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVE 288 (297)
T ss_pred HHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhh
Confidence 886652221 11222334444445665442 221 111 111111111122 45566666665555677788888887
Q ss_pred EEEEEEe
Q 026533 226 AEVTVHG 232 (237)
Q Consensus 226 ~~v~v~~ 232 (237)
+....+.
T Consensus 289 ~~~~~~~ 295 (297)
T KOG1987|consen 289 AESEPLS 295 (297)
T ss_pred cccCCcC
Confidence 7766554
No 24
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=98.87 E-value=4.7e-09 Score=80.56 Aligned_cols=71 Identities=24% Similarity=0.419 Sum_probs=51.7
Q ss_pred CCCcEEEEEEEEEEEeCCCC--ceEEEec--ccceeeecc-----cCccccccccceeccccccCCCCeeecCeEEEEEE
Q 026533 8 QHGWEVYAVFRLFLLDQNKG--NFLILQD--AMGAERRFH-----RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAE 78 (237)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~--~~~~~~~--~~~~~~~F~-----~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~ 78 (237)
+.+|.+.|+|+|.|+||.++ ..+.... +....+.|. ....+|||.+||++++|++ .|||+||+|+|+|+
T Consensus 70 ~~~w~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~ 147 (149)
T cd00270 70 LLEWPFRGKITLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVE 147 (149)
T ss_pred cccCCccceEEEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEE
Confidence 46799999999999999864 2221111 000124554 1357899999999999985 59999999999998
Q ss_pred EE
Q 026533 79 VF 80 (237)
Q Consensus 79 v~ 80 (237)
|.
T Consensus 148 v~ 149 (149)
T cd00270 148 VD 149 (149)
T ss_pred EC
Confidence 73
No 25
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=98.86 E-value=4.4e-09 Score=79.03 Aligned_cols=65 Identities=22% Similarity=0.389 Sum_probs=52.7
Q ss_pred CcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeec--CeEEEEEEEE
Q 026533 10 GWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLE--DTCVFGAEVF 80 (237)
Q Consensus 10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~--d~~~~~~~v~ 80 (237)
+|.+.++|+|+|+||.++..+.... ..++|.. ..+|||.+||++++|.+ +|||.| |+++|++.|+
T Consensus 64 ~~~~~~~~~l~llnq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 64 GEASKYEYRVEMVHQANPTKNIKRE---FASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCceeEEEEEEEEcCCCCccceEEe---ccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 4778999999999996555454444 4678876 46899999999999974 799999 9999998864
No 26
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.5e-09 Score=99.44 Aligned_cols=73 Identities=26% Similarity=0.426 Sum_probs=65.8
Q ss_pred CcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCC---eeecCeEEEEEEEEEeecc
Q 026533 10 GWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNG---FLLEDTCVFGAEVFVSKER 85 (237)
Q Consensus 10 ~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~g---fl~~d~~~~~~~v~v~~~~ 85 (237)
.|.|||+|.|.|.|++.+....... ++|||....++|||++||.|..|..|+.| |+.+++++|.|.|+|++++
T Consensus 99 ~~~ccaqFaf~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP 174 (1089)
T COG5077 99 YYDCCAQFAFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP 174 (1089)
T ss_pred chhhhhheeeecCCCCCCchhhhhc---ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence 5999999999999998877665443 78999999999999999999999987776 8999999999999999985
No 27
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=98.83 E-value=1.4e-08 Score=74.63 Aligned_cols=66 Identities=32% Similarity=0.545 Sum_probs=51.9
Q ss_pred CCCcEEEEEEEEEEEeCCCCceEEEecccceeeecc-cCccccccccceeccccccCCCCeeecCeEEEEEEE
Q 026533 8 QHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFH-RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 79 (237)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~-~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v 79 (237)
+..|.+.|+|+|.|+|++.++..... ..+.|. ....+|||.+||++++|.++ +++.||+++|+|+|
T Consensus 59 ~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l~~~--~~~~~d~l~i~~~v 125 (126)
T cd00121 59 LEKWSVRAEFTLKLVNQNGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDLEDS--YYLVDDSLTIEVEV 125 (126)
T ss_pred CCCCcEEEEEEEEEECCCCCccceEe----ccCCcCCCCCCCCChHHeeEHHHhccC--CcEECCEEEEEEEE
Confidence 46899999999999999845543322 234453 55789999999999999963 34999999999987
No 28
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.79 E-value=9.2e-08 Score=81.62 Aligned_cols=121 Identities=29% Similarity=0.480 Sum_probs=98.1
Q ss_pred EEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCCce-
Q 026533 104 HVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARH- 182 (237)
Q Consensus 104 ~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~- 182 (237)
+.|.+.+++... ..++|..|..+|..|++.+||.|+ ++++|+.+... ++|.+++.++|.+.|+.....
T Consensus 6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~l~v~n~~~~~~~ 74 (297)
T KOG1987|consen 6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDS----PGWERYAKLRLTVVNQKSEKYL 74 (297)
T ss_pred cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccC----CCcceeEEEEEEEccCCCccee
Confidence 338888988876 778999999999999999999864 78999988763 289999999999999988754
Q ss_pred eee-cceeecCCC--CccccccceeeccccCCCCCceeeCCEEEEEEEEEEEeeec
Q 026533 183 IAG-KADFWFSAS--NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 235 (237)
Q Consensus 183 ~~~-~~~~~F~~~--~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~~~ 235 (237)
... ....+|... ...||+...++...+.++..||++++.+++-+.+.|++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~ 130 (297)
T KOG1987|consen 75 STVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG 130 (297)
T ss_pred eeeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence 333 344454443 57899999999999999889999998888888887776543
No 29
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=98.66 E-value=5.9e-08 Score=74.11 Aligned_cols=69 Identities=20% Similarity=0.337 Sum_probs=51.5
Q ss_pred CcEEEEEEEEEEEeCCCCce--EEEecccceeeecc----cCccccccccceeccccccCCCCeeecCeEEEEEEE
Q 026533 10 GWEVYAVFRLFLLDQNKGNF--LILQDAMGAERRFH----RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 79 (237)
Q Consensus 10 ~w~~~a~f~~~l~n~~~~~~--~~~~~~~~~~~~F~----~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v 79 (237)
.|.+.|+|+|+|++|.+... .... +....+.|. .....||+++||++++|+...++||.||++.|+|+|
T Consensus 72 ~wpv~~~~tfsLlDq~~~~~~~~~~~-~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 72 PWPFRHKVTFMLLDQNNREHVIDAFR-PDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred CcceEEEEEEEEECCCCCCCCcEeec-CCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 79999999999999964332 1111 100135686 334579999999999998544699999999999987
No 30
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=98.62 E-value=5.1e-08 Score=74.73 Aligned_cols=71 Identities=27% Similarity=0.380 Sum_probs=51.5
Q ss_pred CCCcEEEEEEEEEEEeCCCCceEEEe--cccceeeeccc-----CccccccccceeccccccCCCCeeecCeEEEEEEEE
Q 026533 8 QHGWEVYAVFRLFLLDQNKGNFLILQ--DAMGAERRFHR-----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF 80 (237)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~~~~~--~~~~~~~~F~~-----~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~ 80 (237)
..+|.+.|+|+|.|++|.++..+... ......+.|.. ....|||.+||++++|+. .|||.||+++|+|+|.
T Consensus 70 ~l~wpv~a~~~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 70 HLDWPFQGTITLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred ccCCcccceeEEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 34799999999999999754322110 00002345653 235799999999999985 5899999999999873
No 31
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=98.60 E-value=8.4e-08 Score=73.49 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=52.7
Q ss_pred CCcEEEEEEEEEEEeCCCCceE---EEecccceeeecccC----ccccccccceeccccccCCCCeeecCeEEEEEEE
Q 026533 9 HGWEVYAVFRLFLLDQNKGNFL---ILQDAMGAERRFHRL----KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 79 (237)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~---~~~~~~~~~~~F~~~----~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v 79 (237)
..|.+.|+++|+|++|.+.... +... ....+.|... ...||+.+||++++|+.++++||.||++.|.|.|
T Consensus 71 l~wp~~~~~tfsLlDq~~~~~~~~~~~~~-~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 71 LQWPFRQRVTLMLLDQSGKKNHIMETFKA-DPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred cCcceEEEEEEEEECCCCCCCCcceeeec-CCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 4799999999999999744322 1111 0023568654 3479999999999998666799999999999876
No 32
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=98.44 E-value=3.8e-07 Score=70.46 Aligned_cols=69 Identities=17% Similarity=0.348 Sum_probs=49.2
Q ss_pred CCcEEEEEEEEEEEeCCCC--ceE-EEecc---cceeeeccc--------CccccccccceeccccccCCCCeeecCeEE
Q 026533 9 HGWEVYAVFRLFLLDQNKG--NFL-ILQDA---MGAERRFHR--------LKREWGFDEFIPIKAFNDASNGFLLEDTCV 74 (237)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~--~~~-~~~~~---~~~~~~F~~--------~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~ 74 (237)
..|.+.|+|+|+|++|.++ ... ....+ ......|.. ....|||.+||++++|+. .|||.||+++
T Consensus 71 l~wp~~a~~~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~ 148 (154)
T cd03781 71 LEWPFSHRITFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIF 148 (154)
T ss_pred cCCceeeEEEEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEE
Confidence 4899999999999999754 110 01000 001234542 234699999999999974 7899999999
Q ss_pred EEEEE
Q 026533 75 FGAEV 79 (237)
Q Consensus 75 ~~~~v 79 (237)
|+|+|
T Consensus 149 Irc~v 153 (154)
T cd03781 149 LRASV 153 (154)
T ss_pred EEEEe
Confidence 99987
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.7e-07 Score=89.43 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=105.9
Q ss_pred CCeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeCCCC
Q 026533 101 SIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQA 180 (237)
Q Consensus 101 ~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~~~~ 180 (237)
....+|...+...+.. ...||.|..|+.+|++.+.|+++. ...+++|+.+...... ..|++.+++.+++.|..+.
T Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~ 100 (1093)
T KOG1863|consen 26 NQSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDN 100 (1093)
T ss_pred cccccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCCCC
Confidence 3345566655555544 788999999999999999999873 5779999999876655 5699999999999993332
Q ss_pred -ceeeecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEeeec
Q 026533 181 -RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 235 (237)
Q Consensus 181 -~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~~~ 235 (237)
....+...|.|.....+||+.+|+.++++.++..||+.+|++.++++|.+...++
T Consensus 101 ~~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 156 (1093)
T KOG1863|consen 101 LPDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTS 156 (1093)
T ss_pred chhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCc
Confidence 2234566789998889999999999999999999999999999999999987665
No 34
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=98.24 E-value=2.7e-06 Score=67.60 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=50.0
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEe--cccceeeecc-cC---ccccccccceeccccccCCCCeeecCeEEEEEEEE
Q 026533 9 HGWEVYAVFRLFLLDQNKGNFLILQ--DAMGAERRFH-RL---KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF 80 (237)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~--~~~~~~~~F~-~~---~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~ 80 (237)
..|.+.|+|+|+|++|.+...+... .+....+.|. .. ...||+++||++++|+ +++||.||++.|.|.|.
T Consensus 109 L~WP~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 109 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD 184 (186)
T ss_pred cCCceeEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence 3799999999999999642111100 0000224575 22 3479999999999997 47899999999999875
No 35
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=98.22 E-value=4.2e-06 Score=64.88 Aligned_cols=70 Identities=24% Similarity=0.397 Sum_probs=49.8
Q ss_pred CCcEEEEEEEEEEEeCCCCceEE--Ee-ccc-ceeeec-ccCccccccccceeccccccCCCCeeecCeEEEEEEE
Q 026533 9 HGWEVYAVFRLFLLDQNKGNFLI--LQ-DAM-GAERRF-HRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 79 (237)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~--~~-~~~-~~~~~F-~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v 79 (237)
..|.+..+++|.|++|.+.+... .. +.. -+-+|. ......||+..||++++|.++ +|||.||++-|+|.|
T Consensus 89 L~WPf~~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 89 LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred cCCceeeEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 68999999999999997544221 00 100 011233 233347999999999999853 699999999999876
No 36
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=98.00 E-value=1.7e-05 Score=61.76 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=47.6
Q ss_pred CCCCcE-EEEEEEEEEEeCCC---CceEEEe----cccc-----eeeeccc-----------------Ccccccccccee
Q 026533 7 LQHGWE-VYAVFRLFLLDQNK---GNFLILQ----DAMG-----AERRFHR-----------------LKREWGFDEFIP 56 (237)
Q Consensus 7 ~~~~w~-~~a~f~~~l~n~~~---~~~~~~~----~~~~-----~~~~F~~-----------------~~~~wG~~~fi~ 56 (237)
....|. +.|+++|+|++|.. ...+... +... ....|.. ....|||..||+
T Consensus 66 ~~L~WP~v~a~~t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis 145 (167)
T cd03771 66 DVLEWPCPNRQATMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFIS 145 (167)
T ss_pred ccccCcceeEEEEEEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCcccccccee
Confidence 356799 58999999999962 1112111 1000 0011222 224799999999
Q ss_pred ccccccCCCCeeecCeEEEEEEE
Q 026533 57 IKAFNDASNGFLLEDTCVFGAEV 79 (237)
Q Consensus 57 ~~~l~~~~~gfl~~d~~~~~~~v 79 (237)
+++|.. ++||.||++.|.+++
T Consensus 146 ~~~L~~--r~ylk~dtl~i~~~~ 166 (167)
T cd03771 146 HSRLRR--RDFLKGDDLIILLDF 166 (167)
T ss_pred HHHhcc--CCCCcCCEEEEEEEe
Confidence 999985 679999999999886
No 37
>smart00061 MATH meprin and TRAF homology.
Probab=97.71 E-value=9.1e-05 Score=51.53 Aligned_cols=43 Identities=30% Similarity=0.624 Sum_probs=34.5
Q ss_pred CCCCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccce
Q 026533 7 LQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFI 55 (237)
Q Consensus 7 ~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi 55 (237)
.+.+|+++|+|+|.|+|+.+++.. +. ..++|.. ..+|||.+||
T Consensus 53 ~~~~w~v~a~~~~~l~~~~~~~~~--~~---~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 53 DSRKWSIEAEFTLKLVSQNGKSLS--KK---DKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCCCeEEEEEEEEEEEeCCCCEEe--ee---eeEEEcC-CCccceeeEC
Confidence 345899999999999999876542 22 5788987 7899999986
No 38
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=5.9e-05 Score=74.83 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=66.1
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeecccC
Q 026533 9 HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERST 87 (237)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~~~~ 87 (237)
..|++++++.+.+.|..++.....+. .+|+|....++|||.+|+.+.++.+|..||+.+|++.++++|.+-+++..
T Consensus 82 ~~~s~~~~~~~~v~~~~~~~~~~~~~---~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 82 KSWSCGAQAVLRVKNTIDNLPDPEKA---IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred cceEecchhhhccccCCCCchhhhhh---hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence 34999999999999954555454433 68999999999999999999999999999999999999999999888754
No 39
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.91 E-value=0.00071 Score=60.01 Aligned_cols=80 Identities=24% Similarity=0.347 Sum_probs=68.5
Q ss_pred cCCCCeEEEEEccccccC-------CceeecccEE--eCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEE
Q 026533 98 DAPSIKHVWRIENFSKLR-------SECCDSQVFS--SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIY 167 (237)
Q Consensus 98 ~~~~~~~~w~I~nfs~l~-------~~~~~S~~f~--~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~ 167 (237)
....+...|+|.+++..+ ...++|+.|. .+||..+.++|-+|++.+++.++|+|+.+..++..+ ..|++.
T Consensus 276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~ 355 (391)
T KOG0297|consen 276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFR 355 (391)
T ss_pred hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCC
Confidence 356899999999995554 3578899996 489999999999999998899999999999876543 479999
Q ss_pred EEEEEEEEeC
Q 026533 168 AEFTLRLLDQ 177 (237)
Q Consensus 168 ~~~~l~l~n~ 177 (237)
-++++.+++|
T Consensus 356 ~~v~~~l~dq 365 (391)
T KOG0297|consen 356 QKVTLMLLDQ 365 (391)
T ss_pred CceEEEEecc
Confidence 9999999999
No 40
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=96.75 E-value=0.0017 Score=50.37 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=28.6
Q ss_pred ccccccccceeccccccCCCCeeecCeEEEEEEE
Q 026533 46 KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 79 (237)
Q Consensus 46 ~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v 79 (237)
..++||+.||+++.|.. ++||.||++.|.+++
T Consensus 135 ~~gfG~~~Fish~~L~~--r~yikdDtlfI~~~~ 166 (167)
T cd03783 135 GIDFGWSTFISHSQLRR--RSFLKNDDLIIFVDF 166 (167)
T ss_pred CcccccccceeHHHHhh--CCcccCCeEEEEEec
Confidence 34899999999999984 899999999998875
No 41
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=96.38 E-value=0.005 Score=47.64 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=47.9
Q ss_pred CCcEEE-EEEEEEEEeCCC---CceEEEe--cc--cceee---ec--ccC-----------------ccccccccceecc
Q 026533 9 HGWEVY-AVFRLFLLDQNK---GNFLILQ--DA--MGAER---RF--HRL-----------------KREWGFDEFIPIK 58 (237)
Q Consensus 9 ~~w~~~-a~f~~~l~n~~~---~~~~~~~--~~--~~~~~---~F--~~~-----------------~~~wG~~~fi~~~ 58 (237)
..|.+. -+.+|.|++|.. ...+... .+ ..... .| ... ..++|++.||+++
T Consensus 68 L~WPf~~~qit~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~ 147 (167)
T cd03782 68 LQWPCPWQQATMMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHL 147 (167)
T ss_pred ccCCCcCCeEEEEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHH
Confidence 579988 899999999963 2233222 11 00001 24 222 4689999999999
Q ss_pred ccccCCCCeeecCeEEEEEEE
Q 026533 59 AFNDASNGFLLEDTCVFGAEV 79 (237)
Q Consensus 59 ~l~~~~~gfl~~d~~~~~~~v 79 (237)
.|.. +.||.||.+.|-+++
T Consensus 148 ~L~~--r~yikdD~ifi~~~~ 166 (167)
T cd03782 148 RLRS--RDFIKGDDVIFLLTM 166 (167)
T ss_pred HHhh--cCcccCCeEEEEEec
Confidence 9984 889999999988765
No 42
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=26.90 E-value=1.1e+02 Score=20.41 Aligned_cols=16 Identities=25% Similarity=0.791 Sum_probs=13.9
Q ss_pred EeCCeEEEEEEEeCCC
Q 026533 125 SSGDQKWQIQLYPKGR 140 (237)
Q Consensus 125 ~~gg~~W~l~vyp~G~ 140 (237)
+++|++|+-.+.|+|.
T Consensus 38 tI~g~~~~~sl~p~g~ 53 (80)
T PF08922_consen 38 TIDGHPWRTSLFPMGN 53 (80)
T ss_dssp EETTEEEEEEEEESST
T ss_pred EECCEEEEEEEEECCC
Confidence 5799999999999764
Done!