Query 026533
Match_columns 237
No_of_seqs 243 out of 1340
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 15:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2foj_A Ubiquitin carboxyl-term 100.0 4.4E-33 1.5E-37 214.9 14.7 137 99-237 16-154 (155)
2 3ivv_A Speckle-type POZ protei 100.0 2.8E-31 9.5E-36 202.6 10.7 131 98-233 7-145 (145)
3 4gjh_A TNF receptor-associated 100.0 3.6E-30 1.2E-34 202.9 7.4 136 98-233 20-175 (178)
4 1ca9_A TRAF2, protein (TNF rec 100.0 2.2E-29 7.4E-34 200.8 7.1 133 99-232 40-191 (192)
5 1d00_A Tumor necrosis factor r 100.0 5.2E-29 1.8E-33 194.5 8.0 132 99-231 16-166 (168)
6 1lb6_A TNF receptor-associated 99.9 5.3E-28 1.8E-32 187.3 9.9 132 100-233 3-158 (160)
7 4ghu_A TNF receptor-associated 99.9 1E-28 3.6E-33 197.3 6.0 135 98-234 36-190 (198)
8 2gkw_A TNF receptor-associated 99.9 2E-28 6.8E-33 195.1 6.6 132 99-232 37-188 (192)
9 1flk_A TNF receptor associated 99.9 9.9E-28 3.4E-32 195.9 6.3 133 99-233 73-225 (228)
10 3hqi_A Speckle-type POZ protei 99.9 2.1E-26 7E-31 196.5 12.0 127 101-232 6-140 (312)
11 2f1z_A Ubiquitin carboxyl-term 99.9 3.7E-26 1.3E-30 207.7 10.7 135 99-235 28-164 (522)
12 2foj_A Ubiquitin carboxyl-term 99.6 8.4E-16 2.9E-20 117.8 7.1 78 5-85 74-151 (155)
13 3ivv_A Speckle-type POZ protei 99.6 2E-15 6.7E-20 114.5 5.9 73 9-84 73-145 (145)
14 4gwm_A Meprin A subunit beta; 99.4 3E-13 1E-17 123.1 9.8 128 98-232 402-567 (592)
15 2f1z_A Ubiquitin carboxyl-term 99.3 1.8E-12 6.1E-17 117.6 5.0 77 6-85 87-163 (522)
16 4gjh_A TNF receptor-associated 99.3 9.5E-13 3.3E-17 103.1 2.1 76 8-83 93-174 (178)
17 3hqi_A Speckle-type POZ protei 99.2 1E-11 3.4E-16 105.4 6.5 74 9-85 69-142 (312)
18 1ca9_A TRAF2, protein (TNF rec 99.1 1.2E-11 4.1E-16 97.9 1.3 74 9-83 113-191 (192)
19 1d00_A Tumor necrosis factor r 99.1 2.1E-11 7E-16 94.4 2.1 72 9-82 89-166 (168)
20 1lb6_A TNF receptor-associated 99.1 6.1E-11 2.1E-15 91.1 3.5 73 8-84 75-158 (160)
21 4ghu_A TNF receptor-associated 99.0 5.5E-11 1.9E-15 94.5 1.0 75 9-85 110-190 (198)
22 1flk_A TNF receptor associated 99.0 1.5E-10 5.1E-15 94.0 2.1 74 8-83 145-224 (228)
23 2gkw_A TNF receptor-associated 98.9 1.7E-10 5.7E-15 91.3 1.4 74 8-83 109-188 (192)
24 4gwm_A Meprin A subunit beta; 93.5 0.029 1E-06 51.1 2.2 37 47-85 533-569 (592)
25 3v0r_A Major allergen ALT A 1; 35.4 13 0.00044 26.6 1.1 27 99-125 9-37 (133)
26 1yel_A AT1G16640; CESG, protei 28.1 92 0.0031 20.8 4.6 13 199-211 68-80 (104)
27 2jmf_A E3 ubiquitin-protein li 20.1 70 0.0024 18.8 2.3 13 2-14 14-26 (53)
No 1
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=100.00 E-value=4.4e-33 Score=214.89 Aligned_cols=137 Identities=14% Similarity=0.245 Sum_probs=117.3
Q ss_pred CCCCeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcC-CCCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 026533 99 APSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRH-GTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQ 177 (237)
Q Consensus 99 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~-~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~ 177 (237)
...++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+.. +.++||||||+|.. +..+.+|++.|+|+|+|+||
T Consensus 16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~-~~~~~~w~v~a~~~l~l~~~ 93 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNA-ESDSTSWSCHAQAVLKIINY 93 (155)
T ss_dssp CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEEST-TCCCSSCEEEEEEEEEECCS
T ss_pred CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCC-CCCCCCCEEEEEEEEEEEcC
Confidence 45689999999999996 78999999999999999999999765 35789999999964 44466899999999999999
Q ss_pred CCCc-eeeecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEeeecCC
Q 026533 178 AQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 237 (237)
Q Consensus 178 ~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~~~~~ 237 (237)
+++. +..+...++|.....+|||++||++++|+++.+|||+||+|+|+|+|+|.+++|++
T Consensus 94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~ 154 (155)
T 2foj_A 94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 154 (155)
T ss_dssp SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence 8765 44455678898767889999999999999888999999999999999999999974
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.97 E-value=2.8e-31 Score=202.58 Aligned_cols=131 Identities=27% Similarity=0.480 Sum_probs=113.3
Q ss_pred cCCCCeEEEEEccccccC---CceeecccEEeCCe---EEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEE
Q 026533 98 DAPSIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFT 171 (237)
Q Consensus 98 ~~~~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~ 171 (237)
+...++|+|+|+|||.++ ++.++||+|.+||| +|+|++||+|+..+.++|||+||+|.+. +.|++.|+|+
T Consensus 7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f~ 82 (145)
T 3ivv_A 7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFK 82 (145)
T ss_dssp CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEEE
T ss_pred cEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEEE
Confidence 456789999999999986 57899999999996 9999999999877667899999999873 5799999999
Q ss_pred EEEEeCCCCceee--ecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEee
Q 026533 172 LRLLDQAQARHIA--GKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 233 (237)
Q Consensus 172 l~l~n~~~~~~~~--~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~ 233 (237)
|+|+||.++.+.. ....++|.. ..+|||++||++++|+++++|||+||+|+|+|+|+|+++
T Consensus 83 l~llnq~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 83 FSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEECTTSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEecCCCceeeecccceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 9999999876542 234678864 578999999999999776789999999999999999863
No 3
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.96 E-value=3.6e-30 Score=202.91 Aligned_cols=136 Identities=24% Similarity=0.350 Sum_probs=113.1
Q ss_pred cCCCCeEEEEEccccccCC-------ceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCC-CCCCCeEE
Q 026533 98 DAPSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTT-LTPGSKIY 167 (237)
Q Consensus 98 ~~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~-~~~~~~~~ 167 (237)
....+.|+|+|+|||.+++ ..++|++|.+| ||+|+|++||+|+..+.++|||+||+|.+++. ...+|++.
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~ 99 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR 99 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence 4678999999999999863 27999999999 99999999999988766799999999987543 12479999
Q ss_pred EEEEEEEEeCCCCc-eeeec-----ceeecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEee
Q 026533 168 AEFTLRLLDQAQAR-HIAGK-----ADFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 233 (237)
Q Consensus 168 ~~~~l~l~n~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~ 233 (237)
|+|+|+|+||.+.. +.... ..+.|+. .+.+|||.+||++++|+++.+|||+||+|+|+|+|+|.++
T Consensus 100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 99999999998653 33221 3467763 3568999999999999988899999999999999987543
No 4
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.96 E-value=2.2e-29 Score=200.80 Aligned_cols=133 Identities=23% Similarity=0.354 Sum_probs=110.5
Q ss_pred CCCCeEEEEEccccccCC-----c--eeecccEEe--CCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 026533 99 APSIKHVWRIENFSKLRS-----E--CCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA 168 (237)
Q Consensus 99 ~~~~~~~w~I~nfs~l~~-----~--~~~S~~f~~--gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~ 168 (237)
...+.|+|+|+|||.+++ + .++||+|.+ ||++|+|++||+|+..+.++|||+||++.+++..+ .+|++.|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 578999999999999863 2 599999999 99999999999998776679999999998765544 6899999
Q ss_pred EEEEEEEeCCCCceeeecc-----eeecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEe
Q 026533 169 EFTLRLLDQAQARHIAGKA-----DFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG 232 (237)
Q Consensus 169 ~~~l~l~n~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~ 232 (237)
+|+|+|+||.+..+..... ...|.+ .+.+|||++||++++|++ .+|||+||+|+|+|+|+|.+
T Consensus 120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 9999999999875542221 124642 356899999999999985 37999999999999998853
No 5
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.95 E-value=5.2e-29 Score=194.48 Aligned_cols=132 Identities=22% Similarity=0.337 Sum_probs=109.4
Q ss_pred CCCCeEEEEEccccccC-----Cc--eeecccEE--eCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCCC-CCCeEEE
Q 026533 99 APSIKHVWRIENFSKLR-----SE--CCDSQVFS--SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA 168 (237)
Q Consensus 99 ~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~--~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~-~~~~~~~ 168 (237)
...+.|+|+|+|||.++ ++ .++||+|. +||++|+|++||+|+..+.++|||+||++.+++..+ .+|++.|
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 46899999999999986 23 38999996 799999999999998776679999999998765543 6899999
Q ss_pred EEEEEEEeCCCCceeeecc-----eeecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEE
Q 026533 169 EFTLRLLDQAQARHIAGKA-----DFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVH 231 (237)
Q Consensus 169 ~~~l~l~n~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~ 231 (237)
+|+|+|+||.+..+..... ...|.. .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.
T Consensus 96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred EEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 9999999999876543221 235653 3578999999999999973 399999999999999874
No 6
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.95 E-value=5.3e-28 Score=187.34 Aligned_cols=132 Identities=16% Similarity=0.179 Sum_probs=104.1
Q ss_pred CCCeEEEEEccccccC-----Cc--eeecccEEeC--CeEEEEEEEeCCCcCCC-CCeEEEEEEecCCCCC-CCCCeEEE
Q 026533 100 PSIKHVWRIENFSKLR-----SE--CCDSQVFSSG--DQKWQIQLYPKGRRHGT-GTHLAVYLALADSTTL-TPGSKIYA 168 (237)
Q Consensus 100 ~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~vyp~G~~~~~-~~~lslyL~~~~~~~~-~~~~~~~~ 168 (237)
..+.|+|+|+|||.++ ++ .++|++|.+| ||+|+|++||+|+..+. ++|||+||++.+++.. ..+|++.|
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 82 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG 82 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence 4689999999999986 33 8999999999 99999999999987543 7899999999876543 34699999
Q ss_pred EEEEEEEeCCCCc---eeeec-----ceeecCC-----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEee
Q 026533 169 EFTLRLLDQAQAR---HIAGK-----ADFWFSA-----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 233 (237)
Q Consensus 169 ~~~l~l~n~~~~~---~~~~~-----~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~ 233 (237)
+|+|+|+||.+.. +.... ....|.+ ...+|||++||++++|+. +|||+||+|+|+|+|+|+..
T Consensus 83 ~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred eEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence 9999999998652 11111 1123542 124799999999999995 79999999999999999864
No 7
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.95 E-value=1e-28 Score=197.30 Aligned_cols=135 Identities=21% Similarity=0.340 Sum_probs=110.5
Q ss_pred cCCCCeEEEEEccccccCC-------ceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEE
Q 026533 98 DAPSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIY 167 (237)
Q Consensus 98 ~~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~ 167 (237)
....+.|+|+|+|||.+++ +.++||+|.+| |++|+|++||+|+..+.++||||||++.+++.. ...|++.
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~ 115 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 115 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence 3567999999999999863 68999999999 999999999999987678899999999875542 3489999
Q ss_pred EEEEEEEEeCCCCc-eeeec-----ceeec----CCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEeee
Q 026533 168 AEFTLRLLDQAQAR-HIAGK-----ADFWF----SASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS 234 (237)
Q Consensus 168 ~~~~l~l~n~~~~~-~~~~~-----~~~~F----~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~~ 234 (237)
|+|+|+|+||.+.. +.... ....| ...+.+|||++||++++|++ +|||+||+|+|+|+|+|+.-.
T Consensus 116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~ 190 (198)
T 4ghu_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 190 (198)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC
T ss_pred EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCC
Confidence 99999999998642 32211 11123 33457899999999999996 799999999999999987643
No 8
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.95 E-value=2e-28 Score=195.09 Aligned_cols=132 Identities=22% Similarity=0.349 Sum_probs=109.2
Q ss_pred CCCCeEEEEEccccccC-----Cc--eeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEE
Q 026533 99 APSIKHVWRIENFSKLR-----SE--CCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYA 168 (237)
Q Consensus 99 ~~~~~~~w~I~nfs~l~-----~~--~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~ 168 (237)
...++|+|+|+|||.++ ++ .++|++|.+| ||+|+|++||+|++.+.++|+|+||++.+++.. ..+|++.|
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 116 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence 36889999999999986 33 5999999999 999999999999877678999999999876543 24799999
Q ss_pred EEEEEEEeCCCCc-eeeec-----ceeecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEe
Q 026533 169 EFTLRLLDQAQAR-HIAGK-----ADFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG 232 (237)
Q Consensus 169 ~~~l~l~n~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~ 232 (237)
+|+|+|+||.+.. +.... ..+.|.+ .+.+|||++||++++|++ +|||+||+|+|+|+|.|..
T Consensus 117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence 9999999998763 33211 1245754 246899999999999986 6999999999999997754
No 9
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.94 E-value=9.9e-28 Score=195.86 Aligned_cols=133 Identities=22% Similarity=0.343 Sum_probs=110.4
Q ss_pred CCCCeEEEEEccccccCC-------ceeecccEEeC--CeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEEE
Q 026533 99 APSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYA 168 (237)
Q Consensus 99 ~~~~~~~w~I~nfs~l~~-------~~~~S~~f~~g--g~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~~ 168 (237)
...+.|+|+|.|||.++. ..++|++|.+| ||+|+|++||+|++.+.++|+|+||++.+++.. ..+|++.|
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a 152 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence 478999999999999862 27999999999 999999999999887678999999999876553 34799999
Q ss_pred EEEEEEEeCCCCc-eeee-----cceeecCC----CCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEee
Q 026533 169 EFTLRLLDQAQAR-HIAG-----KADFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 233 (237)
Q Consensus 169 ~~~l~l~n~~~~~-~~~~-----~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~ 233 (237)
+|+|+|+||.+.. +... ...+.|.+ .+.+|||++||++++|++ +|||+||+|+|+|+|+|.+.
T Consensus 153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~ 225 (228)
T 1flk_A 153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL 225 (228)
T ss_dssp CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTS
T ss_pred EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEcccc
Confidence 9999999998764 2221 12234652 346899999999999997 79999999999999988654
No 10
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.94 E-value=2.1e-26 Score=196.48 Aligned_cols=127 Identities=28% Similarity=0.505 Sum_probs=107.2
Q ss_pred CCeEEEEEccccccC---CceeecccEEeCCe---EEEEEEEeCCCcCCCCCeEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 026533 101 SIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRL 174 (237)
Q Consensus 101 ~~~~~w~I~nfs~l~---~~~~~S~~f~~gg~---~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l 174 (237)
.++|+|+|+|||.++ ++.+.||+|.+||+ +|+|++||+|+..+.++|+|+||+|.++ +.|++.|+|+|+|
T Consensus 6 ~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~l 81 (312)
T 3hqi_A 6 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI 81 (312)
T ss_dssp EEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEEE
T ss_pred EEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEEE
Confidence 468999999999996 68899999999995 9999999999877667999999999863 4689999999999
Q ss_pred EeCCCCceee--ecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEe
Q 026533 175 LDQAQARHIA--GKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG 232 (237)
Q Consensus 175 ~n~~~~~~~~--~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~ 232 (237)
+||++..... ....+.|.. ..+|||++||++++|+++.+|||+||+|+|+|+|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~ 140 (312)
T 3hqi_A 82 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQ 140 (312)
T ss_dssp ECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEE
T ss_pred EeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEe
Confidence 9999876542 235678875 46899999999999988778999999999999999995
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.93 E-value=3.7e-26 Score=207.66 Aligned_cols=135 Identities=13% Similarity=0.247 Sum_probs=113.1
Q ss_pred CCCCeEEEEEccccccCCceeecccEEeCCeEEEEEEEeCCCcCC-CCCeEEEEEEecCCCCCCCCCeEEEEEEEEEEeC
Q 026533 99 APSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHG-TGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQ 177 (237)
Q Consensus 99 ~~~~~~~w~I~nfs~l~~~~~~S~~f~~gg~~W~l~vyp~G~~~~-~~~~lslyL~~~~~~~~~~~~~~~~~~~l~l~n~ 177 (237)
...++|+|+|+|||.+++ .++|++|.+||++|+|++||+|+..+ .++|||+||.|.+. ..+.+|.+.|+|+|+|+|+
T Consensus 28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~ 105 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 105 (522)
T ss_dssp CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence 447899999999999986 89999999999999999999997543 56899999999875 5567899999999999999
Q ss_pred CCCce-eeecceeecCCCCccccccceeeccccCCCCCceeeCCEEEEEEEEEEEeeec
Q 026533 178 AQARH-IAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 235 (237)
Q Consensus 178 ~~~~~-~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gfl~~D~l~ie~~v~v~~~~~ 235 (237)
.++.. ..+...++|.....+|||.+||++++|.++.+|||+||+++|+|+|+|...+|
T Consensus 106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g 164 (522)
T 2f1z_A 106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG 164 (522)
T ss_dssp TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence 87543 44566788987778899999999999987778999999999999999976665
No 12
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.61 E-value=8.4e-16 Score=117.85 Aligned_cols=78 Identities=19% Similarity=0.367 Sum_probs=68.0
Q ss_pred CCCCCCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeec
Q 026533 5 SSLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE 84 (237)
Q Consensus 5 ~~~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~ 84 (237)
+..+.+|+++|+|+|.|+||.+++.+..+. ..|+|.....+|||++||++++|++|.+|||+||+++|+|+|.|.++
T Consensus 74 ~~~~~~w~v~a~~~l~l~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~ 150 (155)
T 2foj_A 74 ESDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAP 150 (155)
T ss_dssp TCCCSSCEEEEEEEEEECCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCC
T ss_pred CCCCCCCEEEEEEEEEEEcCCCCcceEEec---cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCc
Confidence 455788999999999999998876444444 57899887789999999999999999999999999999999999766
Q ss_pred c
Q 026533 85 R 85 (237)
Q Consensus 85 ~ 85 (237)
+
T Consensus 151 t 151 (155)
T 2foj_A 151 H 151 (155)
T ss_dssp B
T ss_pred c
Confidence 5
No 13
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.57 E-value=2e-15 Score=114.52 Aligned_cols=73 Identities=27% Similarity=0.453 Sum_probs=63.5
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeec
Q 026533 9 HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE 84 (237)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~ 84 (237)
++|+++|+|+|.|+||.+++....... ..|+|+. ..+|||++||++++|+++++|||+||+++|+|+|.|+++
T Consensus 73 ~~w~v~a~f~l~llnq~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 73 PKSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp SSSEEEEEEEEEEECTTSCEEEEEECS--SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred CCCcEEEEEEEEEEecCCCceeeeccc--ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 579999999999999998876654433 5789975 689999999999999988899999999999999999864
No 14
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.44 E-value=3e-13 Score=123.09 Aligned_cols=128 Identities=19% Similarity=0.217 Sum_probs=99.7
Q ss_pred cCCCCeEEEEEccccccC---CceeecccEE-eCCeEEEEEEEeCCCcCCCCCeEEEEEEecCCCCC-CCCCeEE-EEEE
Q 026533 98 DAPSIKHVWRIENFSKLR---SECCDSQVFS-SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIY-AEFT 171 (237)
Q Consensus 98 ~~~~~~~~w~I~nfs~l~---~~~~~S~~f~-~gg~~W~l~vyp~G~~~~~~~~lslyL~~~~~~~~-~~~~~~~-~~~~ 171 (237)
+..+..+.|+|.||+++. +..++||+|. ..||.++|.+||++ ..|+|||++|.++++. ...|++. -+++
T Consensus 402 ~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t 476 (592)
T 4gwm_A 402 ETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQAT 476 (592)
T ss_dssp SSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEE
T ss_pred eCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEE
Confidence 577889999999999985 5689999996 58999999999974 5799999999987654 3589995 6799
Q ss_pred EEEEeCCCCce----e----eec-------ce------------eecCC-----CCccccccceeeccccCCCCCceeeC
Q 026533 172 LRLLDQAQARH----I----AGK-------AD------------FWFSA-----SNPESGWARYVSFTYFNKPGNGCLVK 219 (237)
Q Consensus 172 l~l~n~~~~~~----~----~~~-------~~------------~~F~~-----~~~~~G~~~fi~~~~L~~~~~gfl~~ 219 (237)
+.|+||+.... . +.. .. ..|.. .+.+|||+.||+++.|.. +.||+|
T Consensus 477 ~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~ 554 (592)
T 4gwm_A 477 MTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKG 554 (592)
T ss_dssp EEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBT
T ss_pred EEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccC
Confidence 99999975421 1 100 00 11221 235689999999999996 689999
Q ss_pred CEEEEEEEEEEEe
Q 026533 220 DVCLVEAEVTVHG 232 (237)
Q Consensus 220 D~l~ie~~v~v~~ 232 (237)
|+|+|.++|+=+.
T Consensus 555 d~~~i~~~~eD~~ 567 (592)
T 4gwm_A 555 DDVYILLTVEDIS 567 (592)
T ss_dssp TBEEEEEEEEECG
T ss_pred CeEEEEEEEEeCc
Confidence 9999999997553
No 15
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=117.62 Aligned_cols=77 Identities=19% Similarity=0.371 Sum_probs=68.0
Q ss_pred CCCCCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeecc
Q 026533 6 SLQHGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER 85 (237)
Q Consensus 6 ~~~~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~~ 85 (237)
+.+++|+++|+|+|.|+|+++++.+..+. ..|+|.....+|||.+||++++|.++.+|||+||+++|+|+|.|..+.
T Consensus 87 ~~~~~w~v~a~f~l~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~ 163 (522)
T 2f1z_A 87 SDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 163 (522)
T ss_dssp CCCSSCBEEEEEEEEECCTTCGGGCEEEE---CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred CCCCCceEEEEEEEEEEcCCCCccceecc---ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence 56889999999999999999887655554 578898878899999999999999989999999999999999997554
No 16
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.27 E-value=9.5e-13 Score=103.08 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=59.6
Q ss_pred CCCcEEEEEEEEEEEeCCCCceEEEec--ccceeeeccc----CccccccccceeccccccCCCCeeecCeEEEEEEEEE
Q 026533 8 QHGWEVYAVFRLFLLDQNKGNFLILQD--AMGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV 81 (237)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v 81 (237)
+.+|.++|+|+|+|+||.++..+.... +....+.|+. ...+|||++||++++|++|++|||+||+++|+|+|.|
T Consensus 93 ~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i 172 (178)
T 4gjh_A 93 LLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172 (178)
T ss_dssp GSCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred ccCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence 357999999999999998765443321 0002467863 3568999999999999999999999999999999966
Q ss_pred ee
Q 026533 82 SK 83 (237)
Q Consensus 82 ~~ 83 (237)
.+
T Consensus 173 ~~ 174 (178)
T 4gjh_A 173 TD 174 (178)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 17
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.23 E-value=1e-11 Score=105.43 Aligned_cols=74 Identities=27% Similarity=0.439 Sum_probs=63.7
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEecccceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEeecc
Q 026533 9 HGWEVYAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER 85 (237)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~~ 85 (237)
++|+++|+|+|.|+||++++....+.. ..++|.. ..+|||++||++++|+++.+|||+||+++|+|+|.|++..
T Consensus 69 ~~~~v~a~~~~~l~~~~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~ 142 (312)
T 3hqi_A 69 PKSEVRAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDS 142 (312)
T ss_dssp CC-CEEEEEEEEEECTTSCEEEEEECS--SCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEEeCCCCcccccccC--CceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEecc
Confidence 589999999999999988776654433 6789986 4699999999999999888999999999999999999765
No 18
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.11 E-value=1.2e-11 Score=97.94 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=55.6
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEeccc-ceeeecc----cCccccccccceeccccccCCCCeeecCeEEEEEEEEEee
Q 026533 9 HGWEVYAVFRLFLLDQNKGNFLILQDAM-GAERRFH----RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 83 (237)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~~-~~~~~F~----~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~ 83 (237)
.+|+++|+|+|.|+||.+++.....-.. ...+.|. ....+|||++||++++|++ .+|||+||+++|+|+|.|.+
T Consensus 113 ~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 113 LRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp SCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred CCCceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 6899999999999999877532111000 0123464 2346899999999999997 58999999999999998753
No 19
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.10 E-value=2.1e-11 Score=94.44 Aligned_cols=72 Identities=24% Similarity=0.372 Sum_probs=54.9
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEecc--cceeeeccc----CccccccccceeccccccCCCCeeecCeEEEEEEEEEe
Q 026533 9 HGWEVYAVFRLFLLDQNKGNFLILQDA--MGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVS 82 (237)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~--~~~~~~F~~----~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~ 82 (237)
.+|+++|+|+|.|+||.+.+... ... ....+.|.. ...+|||.+||++++|+++ +|||+||+++|+|+|.|.
T Consensus 89 ~~w~~~~~~~l~ll~q~~~~~~~-~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 89 LRWPFNQKVTLMLLDQNNREHVI-DAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp SCSSCCCCEEEEECCTTSSCCEE-EEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred CCCceEEEEEEEEECCCCCccce-eccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 68999999999999998765332 110 001245653 3568999999999999974 499999999999999764
No 20
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.06 E-value=6.1e-11 Score=91.06 Aligned_cols=73 Identities=22% Similarity=0.390 Sum_probs=52.3
Q ss_pred CCCcEEEEEEEEEEEeCCCCce--E----EEecccceeeeccc-----CccccccccceeccccccCCCCeeecCeEEEE
Q 026533 8 QHGWEVYAVFRLFLLDQNKGNF--L----ILQDAMGAERRFHR-----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFG 76 (237)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~--~----~~~~~~~~~~~F~~-----~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~ 76 (237)
+.+|.++|+|+|+|+||.++.. + ...+. ..+.|.. ...+|||++||++++|+ ++|||.||+++|+
T Consensus 75 ~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~--~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~ 150 (160)
T 1lb6_A 75 HLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKP--ELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVR 150 (160)
T ss_dssp GSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCT--TSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEE
T ss_pred cCCCceeeeEEEEEEcCCCccccccceEEeecCC--cchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEE
Confidence 3579999999999999976521 1 10111 1234542 12379999999999998 4899999999999
Q ss_pred EEEEEeec
Q 026533 77 AEVFVSKE 84 (237)
Q Consensus 77 ~~v~v~~~ 84 (237)
|+|.|+.+
T Consensus 151 ~~V~v~~~ 158 (160)
T 1lb6_A 151 CEVSTRFD 158 (160)
T ss_dssp EEEEC---
T ss_pred EEEEEeec
Confidence 99999865
No 21
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.00 E-value=5.5e-11 Score=94.50 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=57.7
Q ss_pred CCcEEEEEEEEEEEeCCCCceEEEecc-c-----ceeeecccCccccccccceeccccccCCCCeeecCeEEEEEEEEEe
Q 026533 9 HGWEVYAVFRLFLLDQNKGNFLILQDA-M-----GAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVS 82 (237)
Q Consensus 9 ~~w~~~a~f~~~l~n~~~~~~~~~~~~-~-----~~~~~F~~~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~ 82 (237)
.+|.++|+|+|+|+||.+++.+..... . .-.+.|.....+|||++||++++|++ +|||.||+++|+|+|.|+
T Consensus 110 l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~ 187 (198)
T 4ghu_A 110 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTS 187 (198)
T ss_dssp SCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCT
T ss_pred CCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEec
Confidence 589999999999999987654433210 0 01123445567899999999999985 899999999999999988
Q ss_pred ecc
Q 026533 83 KER 85 (237)
Q Consensus 83 ~~~ 85 (237)
..+
T Consensus 188 ~~~ 190 (198)
T 4ghu_A 188 DLP 190 (198)
T ss_dssp TCC
T ss_pred cCC
Confidence 665
No 22
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=98.96 E-value=1.5e-10 Score=94.04 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=56.7
Q ss_pred CCCcEEEEEEEEEEEeCCCCceEEEecc--cceeeeccc----CccccccccceeccccccCCCCeeecCeEEEEEEEEE
Q 026533 8 QHGWEVYAVFRLFLLDQNKGNFLILQDA--MGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV 81 (237)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~--~~~~~~F~~----~~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v 81 (237)
+.+|.+.|+|+|+|+||.+++.+..... ....+.|.. ...+|||++||++++|.+ +|||.||+++|+|+|.|
T Consensus 145 ~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v 222 (228)
T 1flk_A 145 LLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 222 (228)
T ss_dssp SSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCC
T ss_pred cCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEc
Confidence 4589999999999999987765432210 002345752 345899999999999985 79999999999999877
Q ss_pred ee
Q 026533 82 SK 83 (237)
Q Consensus 82 ~~ 83 (237)
.+
T Consensus 223 ~~ 224 (228)
T 1flk_A 223 SD 224 (228)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 23
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=98.93 E-value=1.7e-10 Score=91.33 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=56.4
Q ss_pred CCCcEEEEEEEEEEEeCCCCceEEEecc--cceeeecccC----ccccccccceeccccccCCCCeeecCeEEEEEEEEE
Q 026533 8 QHGWEVYAVFRLFLLDQNKGNFLILQDA--MGAERRFHRL----KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV 81 (237)
Q Consensus 8 ~~~w~~~a~f~~~l~n~~~~~~~~~~~~--~~~~~~F~~~----~~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v 81 (237)
+.+|.+.|+|+|.|+||.+++.+..... ....+.|... ..+|||++||++++|.+ +|||.||+++|+|+|.|
T Consensus 109 ~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v 186 (192)
T 2gkw_A 109 LLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 186 (192)
T ss_dssp GSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECC
T ss_pred cCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEc
Confidence 3579999999999999988755432210 0023667542 36899999999999986 69999999999999966
Q ss_pred ee
Q 026533 82 SK 83 (237)
Q Consensus 82 ~~ 83 (237)
.+
T Consensus 187 ~~ 188 (192)
T 2gkw_A 187 SD 188 (192)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=93.50 E-value=0.029 Score=51.14 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.8
Q ss_pred cccccccceeccccccCCCCeeecCeEEEEEEEEEeecc
Q 026533 47 REWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER 85 (237)
Q Consensus 47 ~~wG~~~fi~~~~l~~~~~gfl~~d~~~~~~~v~v~~~~ 85 (237)
..||++.||+++.|. ++.||.||.+.|.+.|.=+..-
T Consensus 533 ~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD~~~l 569 (592)
T 4gwm_A 533 GGYGTSAFITHERLK--SRDFIKGDDVYILLTVEDISHL 569 (592)
T ss_dssp EEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEECGGG
T ss_pred CCcCccccccHHHHh--hcCcccCCeEEEEEEEEeCccc
Confidence 468999999999998 5789999999999998666544
No 25
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=35.38 E-value=13 Score=26.65 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=19.8
Q ss_pred CCCCeEEEEEccccccC--CceeecccEE
Q 026533 99 APSIKHVWRIENFSKLR--SECCDSQVFS 125 (237)
Q Consensus 99 ~~~~~~~w~I~nfs~l~--~~~~~S~~f~ 125 (237)
+..+.+.|+|.+|+..| +..+.|-.|.
T Consensus 9 ~~~gd~vwkIs~F~~RKpeGty~nsvsFn 37 (133)
T 3v0r_A 9 TTEGDYVWKISEFYGRKPEGTYYNSLGFN 37 (133)
T ss_dssp CCCCTTEEEEEEEEEEETTSSSCSEEEEE
T ss_pred ccCCceEEEeeeeeeEcCCCCceeeEEEE
Confidence 45688999999999887 4555555554
No 26
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=28.08 E-value=92 Score=20.76 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=11.2
Q ss_pred cccceeeccccCC
Q 026533 199 GWARYVSFTYFNK 211 (237)
Q Consensus 199 G~~~fi~~~~L~~ 211 (237)
||.+|+.-..|..
T Consensus 68 GW~~Fv~~~~L~~ 80 (104)
T 1yel_A 68 GWENFVKDNNLED 80 (104)
T ss_dssp THHHHHHHHTCCT
T ss_pred ChHHHHHHcCCCC
Confidence 8999999888884
No 27
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=20.09 E-value=70 Score=18.80 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=10.1
Q ss_pred CCCCCCCCCcEEE
Q 026533 2 ENTSSLQHGWEVY 14 (237)
Q Consensus 2 ~~~~~~~~~w~~~ 14 (237)
.+...||++|+..
T Consensus 14 ~~~~~LP~GWe~~ 26 (53)
T 2jmf_A 14 INEGPLPPGWEIR 26 (53)
T ss_dssp TSCSCCCTTEEEE
T ss_pred CcCCCCCcCcEEE
Confidence 3567799999875
Done!