BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026534
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 91/224 (40%), Gaps = 63/224 (28%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD ++ RG GF+TF+ +SV+ ++ THEL G V A P+
Sbjct: 62 KDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRR------------- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+ TR KKIFVG L T ED++ Y
Sbjct: 109 -----AHPKMVTR--------------------------TKKIFVGGLSAPTTLEDVKSY 137
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 180
F +FG I D + D + HRGFGFVTF E V D+V HEI + V A P +
Sbjct: 138 FEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 197
Query: 181 DAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDFDDWGYGMGS 224
P+ N A+T R G +D+ +G+G+
Sbjct: 198 VMLPA-----NLAKT------------RAAGRSAYDNIMWGLGT 224
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 161
K+F+G L + + E LR YF R+G I + V KDP RGFGFVTF++ D+V ++
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 162 RSHEICGQQVAIDSATP 178
+HE+ G++V A P
Sbjct: 90 GTHELDGKKVDPKVAFP 106
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 46/215 (21%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
K+ S RG GF+TFA +V +++ + H L G T+ PK + R + + GG
Sbjct: 40 KNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTI-----DPKPCNPRTLQKPKKGG 94
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
G K+F+G LP T DLR +
Sbjct: 95 ---------------------------------------GYKVFLGGLPSNVTETDLRTF 115
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSATPLD 180
F+R+G++ +V + D ++ RGFGF++F EE + V+ + + G+QV I A P D
Sbjct: 116 FNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRD 175
Query: 181 DAGPSQNFMMNAAETFGGYGGPMRTYGRMYGSLDF 215
+G + +G G +G + ++
Sbjct: 176 GSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINM 210
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162
K+FVG L E T E+L RYF RFG I+D V K+ + RGFGFVTFA+ + V +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 163 S-HEICGQQVAIDSATP 178
H + G+ + P
Sbjct: 68 GPHTLDGRTIDPKPCNP 84
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 11 RGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYIS 70
RG GF+ F+ ++ ++ + H + V V RA +E+ + G G N S
Sbjct: 47 RGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREE------QQVSGRTGNLNTSRS 100
Query: 71 AATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILD 130
+ G Y + KKIFVG LP T E+ R+YF +G + D
Sbjct: 101 SG---------------GDAYNKT-------KKIFVGGLPPTLTDEEFRQYFEVYGPVTD 138
Query: 131 VYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRS-HEICGQQVAIDSATPLD 180
V + D RGFGFV+F E D V ++ H++ G+QV + A P D
Sbjct: 139 VAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSR 161
K+FVG + E + LR +F+ +G + V +D K TG RGFGFV F++ V DRV +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRD-KLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 162 RSHEICGQQVAIDSA 176
H I ++V + A
Sbjct: 66 EKHSIDTREVDVKRA 80
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
DQ + RG GF++F S D+V++++ T H+L G V V RA PK+
Sbjct: 144 DQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 72/180 (40%), Gaps = 46/180 (25%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TFA SV+ ++ H EL T+ A P+ + V R
Sbjct: 54 RDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRT---- 109
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L ED+++Y
Sbjct: 110 ----------------------------------------KKIFVGGLSANTVVEDVKQY 129
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 180
F +FG++ D + D HRGFGFVTF E V ++V HEI + V A P +
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 151
G SQ K+F+G L + + + LR YFS+FG I + V +DP RGFGFVTFA
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 152 EEVVADRV-SRRSHEICGQQVAIDSATP 178
+ D+V + HE+ + + A P
Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVAFP 98
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GF+TF + D VE + + HE+ V +A PKE F P
Sbjct: 144 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 72/180 (40%), Gaps = 46/180 (25%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TFA SV+ ++ H EL T+ A P+ + V R
Sbjct: 54 RDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRT---- 109
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L ED+++Y
Sbjct: 110 ----------------------------------------KKIFVGGLSANTVVEDVKQY 129
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 180
F +FG++ D + D HRGFGFVTF E V ++V HEI + V A P +
Sbjct: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 92 GRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA 151
G SQ K+F+G L + + + LR YFS+FG I + V +DP RGFGFVTFA
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 152 EEVVADRV-SRRSHEICGQQVAIDSATP 178
+ D+V + HE+ + + A P
Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVAFP 98
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 DQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRP 53
D+ + HRG GF+TF + D VE + + HE+ V +A PKE F P
Sbjct: 144 DKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 46/185 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED+++Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTVEDVKQY 128
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 180
F +FG++ D + D HRGFGFVTF E + ++V HEI + V A P +
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 181 DAGPS 185
P+
Sbjct: 189 VMSPT 193
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 163 S-HEICGQQVAIDSATP 178
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 73/185 (39%), Gaps = 46/185 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED++ Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTVEDVKHY 128
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 180
F +FG++ D + D HRGFGFVTF E + ++V HEI + V A P +
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 181 DAGPS 185
P+
Sbjct: 189 VMSPT 193
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 163 S-HEICGQQVAIDSATP 178
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 73/185 (39%), Gaps = 46/185 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF V+ ++ + HEL T+ A P+ + V R
Sbjct: 53 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT---- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
KKIFVG L T ED++ Y
Sbjct: 109 ----------------------------------------KKIFVGGLSVNTTVEDVKHY 128
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR-RSHEICGQQVAIDSATPLD 180
F +FG++ D + D HRGFGFVTF E + ++V HEI + V A P +
Sbjct: 129 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Query: 181 DAGPS 185
P+
Sbjct: 189 VMSPT 193
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162
K+F+G L + T E LR YF +FG + + V +DP RGFGFVTF ++ D+V +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 163 S-HEICGQQVAIDSATP 178
S HE+ + + A P
Sbjct: 81 SRHELDSKTIDPKVAFP 97
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 160
KKIFVG L EAT E +R YF +FG I + +P DPK RGF F+TF EE +V
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 161 RRSHEICGQQVAIDSATP 178
++ H + G + I A P
Sbjct: 219 KKFHTVSGSKCEIKVAQP 236
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 161
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 162 RSHEICGQQV 171
+ H + G+ +
Sbjct: 136 KEHRLDGRVI 145
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF-AEEVVADRVSR 161
KIFVG L E + E+++ YF +FG I++V +P D +++ +GF F+TF +E+VV D +
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 162 RSHEICGQQVAIDSATP 178
+I G++V + ATP
Sbjct: 197 PKQKIAGKEVDVKRATP 213
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161
+K+FVG L E T ++LR +F ++G I + V DP+ RGF F+ F D+VS
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 162 RSHEICGQQ 170
I +
Sbjct: 116 ADEHIINSK 124
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPK 47
MP D+ +G FITF S V +L+ ++ G V V RATPK
Sbjct: 167 MPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPK 214
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 70/177 (39%), Gaps = 49/177 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
+D + RG GF+TF + V +M H L G + RA P+E+
Sbjct: 196 RDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREE------------- 242
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q K+FVG +P + T E+ R +F
Sbjct: 243 -----------------------------------QEKTAKMFVGGVPGDCTEEEFRNFF 267
Query: 123 SRFGRILDVYVPKDPKRTGHRGFGFVTFAEE-VVADRVSRRSHEICGQQVAIDSATP 178
++FGR+LD + D RGFGFVT+ E V +S+ I G+ V + ATP
Sbjct: 268 NQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 324
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162
K+F+G L E T + LR YF +FG +LD V +D RGFGF+TF + V +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 163 SHEICGQQVAIDSATPLDD 181
H + G+ + A P ++
Sbjct: 224 EHHLDGKIIDPKRAIPREE 242
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDTH-ELGGSTVVVDRATPKEDDFRPVGRMSH 59
M KD G RG GF+T+ + +VE M + + G V V RATPK R H
Sbjct: 280 MDKDTGRP--RGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQH 337
Query: 60 GGYGAYNAY 68
G +G N Y
Sbjct: 338 GYHGNANPY 346
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 34/181 (18%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR-------------- 88
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRG-ESSQRIGKKIFVGRLPQEATAEDLRR 120
G P + +G S KIFVG +P +LR
Sbjct: 89 -----------------GMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 131
Query: 121 YFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPL 179
YF +FG + +V + D ++ RGFGF+TF +E D+ V+ H+I G++V + A P
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Query: 180 D 180
D
Sbjct: 192 D 192
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 161
K+FVG L T E LR YFS++G ++D + KD RGFGFV F + V ++
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 162 RSHEICGQQVAIDSATP 178
R H + G+ + TP
Sbjct: 71 RPHTLDGRNIDPKPCTP 87
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GFITF SV+ + + H++ G V V RA P++ + G+ +G+
Sbjct: 154 RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGS-RVVP 212
Query: 70 SAATRYAALGAPTL 83
+AA +A PT
Sbjct: 213 NAANGWAGQPPPTW 226
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 31/180 (17%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD+ + RG GF+ F + V ++ H L G + TP+ +P G
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR--GMQPERSRPREG 100
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
+ R E+S+ KIFVG +P +L+ Y
Sbjct: 101 WQQKEP-------------------------RTENSR--SNKIFVGGIPHNCGETELKEY 133
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 180
F+RFG + +V + D ++ RGFGF+TF +E D+ V+ H+I G++V + A P D
Sbjct: 134 FNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRD 193
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 161
K+FVG L T E LR YFS++G ++D + KD RGFGFV F + V ++
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 162 RSHEICGQQVAIDSATP 178
R H + G+ + TP
Sbjct: 71 RPHTLDGRNIDPKPCTP 87
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 11 RGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGA 64
RG GFITF SV+ + + H++ G V V RA P++ + G +G+
Sbjct: 155 RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGS 209
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 34/181 (18%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVD-THELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD+ + RG GF+ F + V ++ H L G + TP+
Sbjct: 43 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR-------------- 88
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRG-ESSQRIGKKIFVGRLPQEATAEDLRR 120
G P + +G S KIFVG +P +LR
Sbjct: 89 -----------------GMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELRE 131
Query: 121 YFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPL 179
YF +FG + +V + D ++ RGFGF+TF +E D+ V+ H+I G++V + A P
Sbjct: 132 YFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
Query: 180 D 180
D
Sbjct: 192 D 192
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVSR 161
K+FVG L T E LR YFS++G ++D + KD RGFGFV F + V ++
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 162 RSHEICGQQVAIDSATP 178
R H + G+ + TP
Sbjct: 71 RPHTLDGRNIDPKPCTP 87
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 11 RGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAYNAYI 69
RG GFITF SV+ + + H++ G V V RA P++ + G+ +G+ A
Sbjct: 154 RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVA-P 212
Query: 70 SAATRYAALGAPTL 83
SAA +A PT
Sbjct: 213 SAANGWAGQPPPTW 226
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 102 KKIFVGRL-PQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV- 159
KKIFVG L P+ T E +R YF FG I + +P DPK RGF F+TF EE +V
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 160 SRRSHEICGQQVAIDSATPLD 180
++ H + G + I A P +
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKE 233
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 161
K+FVG L + + +DL+ YF++FG ++D + DP RGFGF+ F + ++V +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 162 RSHEICGQQVAIDSATPL 179
+ H + G+ + A +
Sbjct: 130 KEHRLDGRVIDPKKAMAM 147
>sp|Q28F51|TADBP_XENTR TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2
SV=1
Length = 409
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161
+K+FVGR ++ +AE+LR++FS++G ++DV++PK R F FVTFA++ VA +
Sbjct: 191 RKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKP-----FRAFAFVTFADDQVAQSLCG 245
Query: 162 RSHEICGQQVAIDSATP 178
I G V + +A P
Sbjct: 246 EDLIIKGVSVHVSTAEP 262
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 104 IFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVADRVSRR 162
+ V LP + T +DL+ YFS FG ++ V V KD K TGH +GFGFV FA+ +V +
Sbjct: 107 LIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAK-TGHSKGFGFVRFADYETQVKVMSQ 165
Query: 163 SHEICG 168
H I G
Sbjct: 166 RHMIDG 171
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 160
+KIFVG L T + +R ++S+FG I D+ V +DP RGFGFVTF+ + D +
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 161 RRSHEICGQQVAIDSATPLDDAGPSQN 187
+R H I G+ V A P DD S++
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSES 109
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 46/198 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+TF+ V+ M H + G TV RA P++D R +S
Sbjct: 56 RDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVS--- 112
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
K+++V + ++ T + L Y
Sbjct: 113 ---------------------------------------TKRLYVSGVREDHTEDMLTEY 133
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 180
F+++G + + D RGFGFVTF + D+ V ++SH + G + + D
Sbjct: 134 FTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKD 193
Query: 181 DAGPSQNFMMNAAETFGG 198
+ +Q M ET GG
Sbjct: 194 EMSKAQ--MNRDRETRGG 209
>sp|Q921F2|TADBP_MOUSE TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1
Length = 414
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161
+K+FVGR ++ TAE+L+++F ++G ++DV++PK R F FVTFA++ VA +
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG 245
Query: 162 RSHEICGQQVAIDSATP 178
I G V I +A P
Sbjct: 246 EDLIIKGISVHISNAEP 262
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 156
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKDYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 157 DRVSRRSHEICGQQVAIDSATPLDDAGPSQ 186
+V + H I G+ D P P +
Sbjct: 159 VKVMSQRHMIDGRWC--DCKLPNSKQSPDE 186
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 155
++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E
Sbjct: 91 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 150
Query: 156 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 200
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 151 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 206
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 160
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 161 RRSHEI----CGQQVAI 173
++ H + C +VA+
Sbjct: 242 KKYHNVGLSKCEIKVAM 258
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 155
++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E
Sbjct: 91 AAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 150
Query: 156 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 200
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 151 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 206
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 160
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 161 RRSHEI----CGQQVAI 173
++ H + C +VA+
Sbjct: 242 KKYHNVGLSKCEIKVAM 258
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 96 SSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVV 155
++QR K+F+G L + T +DL+ YFS+FG ++D + DP RGFGFV F E
Sbjct: 89 TAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESES 148
Query: 156 ADRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 200
D+V ++ H++ G+ + A + P + + E FGG+G
Sbjct: 149 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 204
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-S 160
KKIFVG L + E +R YF FG + + +P D K RGF F+TF EE ++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 161 RRSHEI----CGQQVAI 173
++ H + C +VA+
Sbjct: 240 KKYHNVGLSKCEIKVAM 256
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVS 160
+K+F+G L T E L+++F ++G I+DV V KDPK RGFGF+T++ +V D +
Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76
Query: 161 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGPM-----RTYGRMYGSL 213
R H++ G+ V A P + G + GG M R Y + YG++
Sbjct: 77 ARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTV 134
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 44/178 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GFIT++ A V++ H++ G V RA P+ +
Sbjct: 50 KDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTE------------ 97
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
GR E+ + KK+FVG + +E DLR Y
Sbjct: 98 -----------------------------IGRPEAGATV-KKLFVGGIKEEMEENDLRDY 127
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATP 178
F ++G ++ + D + RGF FV F + D++ R+H+I G+ + + A P
Sbjct: 128 FKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALP 185
>sp|Q5ZLN5|TADBP_CHICK TAR DNA-binding protein 43 OS=Gallus gallus GN=TARDBP PE=2 SV=1
Length = 414
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161
+K+FVGR ++ TA++L+++F+++G ++DV++PK R F FVTFA++ VA +
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKP-----FRAFAFVTFADDQVAQSLCG 245
Query: 162 RSHEICGQQVAIDSATP 178
I G V I +A P
Sbjct: 246 EDLIIKGISVHISNAEP 262
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 156
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F +
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDIK-TGHSKGFGFVRFTDYETQ 158
Query: 157 DRVSRRSHEICGQQVAIDSATPLDDAGPSQ 186
+V + H I G+ D P P +
Sbjct: 159 VKVMSQRHMIDGRWC--DCKLPNSKQSPDE 186
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 44/197 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+ + V+ M H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLREY 119
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 180
F +G+I + D + RGFGFVTF + D+ V ++ H I G + A
Sbjct: 120 FEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQ 179
Query: 181 DAGPSQNFMMNAAETFG 197
+ QN N FG
Sbjct: 180 EMQDVQNTRNNRGGNFG 196
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 159
+K+F+G L E T E LR ++ ++G++ D V +DP RGFGFVTF+ EV A +
Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDA-AM 67
Query: 160 SRRSHEICGQQVAIDSATPLDDA 182
S R H I G+ V A +++
Sbjct: 68 SARPHTIDGRVVEPKRAVAREES 90
>sp|Q5R5W2|TADBP_PONAB TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1
Length = 414
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161
+K+FVGR ++ T ++LR +FS++G ++DV++PK R F FVTFA++ +A +
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG 245
Query: 162 RSHEICGQQVAIDSATP 178
I G V I +A P
Sbjct: 246 EDLIIKGISVHISNAEP 262
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 156
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 157 DRVSRRSHEICG 168
+V + H I G
Sbjct: 159 VKVMSQRHMIDG 170
>sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1
Length = 414
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161
+K+FVGR ++ T ++LR +FS++G ++DV++PK R F FVTFA++ +A +
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG 245
Query: 162 RSHEICGQQVAIDSATP 178
I G V I +A P
Sbjct: 246 EDLIIKGISVHISNAEP 262
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 98 QRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGH-RGFGFVTFAEEVVA 156
Q+ I +G LP + T +DL+ YFS FG +L V V KD K TGH +GFGFV F E
Sbjct: 101 QKTSDLIVLG-LPWKTTEQDLKEYFSTFGEVLMVQVKKDLK-TGHSKGFGFVRFTEYETQ 158
Query: 157 DRVSRRSHEICG 168
+V + H I G
Sbjct: 159 VKVMSQRHMIDG 170
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 160
KK+FVG L E T E +++YF FG I ++ +P D K RGF FVT+ EE V +
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 161 RRSHEICGQQVAIDSATP 178
R H+I + I A P
Sbjct: 171 SRFHQIGTGKCEIKVAQP 188
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 161
K+F+G L + + +DL Y SRFG ++D + DP RGFGFV F + V D+V
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 162 RSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 200
+ H++ G+ + A L P + + + FGG+G
Sbjct: 87 KEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFG 135
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+P D + RG F+T+ + V+ L+ H++G + A PKE
Sbjct: 142 LPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKVAQPKE 190
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 44/178 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M T H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATP 178
F ++G+I + + D RGF FVTF + D+ V ++ H + G + A P
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALP 182
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 159
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A EEV A +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA-AM 72
Query: 160 SRRSHEICGQQVAIDSATPLDDA 182
+ H++ G+ V A +D+
Sbjct: 73 NTTPHKVDGRVVEPKRAVSREDS 95
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF DSV+ +++ H + G V +A PK++
Sbjct: 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQE 185
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 160
KK+FVG L E T E +++YF FG I ++ +P D K RGF FVT+ EE V +
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 161 RRSHEICGQQVAIDSATP 178
R H+I + I +A P
Sbjct: 171 SRFHQIGTGKCEIKAAQP 188
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SR 161
K+F+G L + + +DL Y SRFG +LD + DP RGFGFV F + V D+V
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 162 RSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 200
H++ G+ + A L P + + + FGG+G
Sbjct: 87 NEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFG 135
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+P D + RG F+T+ + V+ L+ H++G + A PKE
Sbjct: 142 LPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKAAQPKE 190
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 44/197 (22%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+ + V+ M H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREESAKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLREY 119
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 180
F +G+I + + D + RGF FVTF + D+ V ++ H I G + A
Sbjct: 120 FEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSKQ 179
Query: 181 DAGPSQNFMMNAAETFG 197
+ QN N FG
Sbjct: 180 EMQDVQNTRNNRGGNFG 196
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 159
+K+F+G L E T E LR Y+ ++G + D V +DP RGFGFVTF+ EV A +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDA-AM 67
Query: 160 SRRSHEICGQQVAIDSATPLDDA 182
+ R H I G+ V A +++
Sbjct: 68 ATRPHTIDGRVVEPKRAVAREES 90
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 160
KK+FVG L E T E +++YF FG I ++ +P D K RGF FVT+ EE V +
Sbjct: 119 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLE 178
Query: 161 RRSHEICGQQVAIDSATP 178
R H+I + I +A P
Sbjct: 179 SRFHQIGTGKCEIKAAQP 196
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 100 IGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159
I K+F+G L + + +DL Y SRFG +LD + DP RGFGFV F + V D+V
Sbjct: 32 IRSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKV 91
Query: 160 -SRRSHEICGQQVAIDSATPLDDAGPSQNFMM----------NAAETFGGYG 200
+ H++ G+ + A L P + + + FGG+G
Sbjct: 92 LETKEHKLDGKLIDPKRAKALQGKEPPKKVFVGGLSPETTEEQIKQYFGGFG 143
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+P D + RG F+T+ + V+ L+ H++G + A PKE
Sbjct: 150 LPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKE 198
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161
+K+F+G L T E+L+ +F ++G I+DV V KDP+ RGFGF+T++ + D +
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 162 -RSHEICGQQVAIDSATPLDD 181
R H+I G+ V A P D
Sbjct: 91 SRPHKIDGRVVEPKRAVPRQD 111
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 74/178 (41%), Gaps = 44/178 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GFIT++ + ++ H++ G V RA P++D P
Sbjct: 64 KDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSP-------- 115
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
NA GA KK+FVG L + + +R Y
Sbjct: 116 ----NA-----------GATV-------------------KKLFVGALKDDHDEQSIRDY 141
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATP 178
F FG I+D+ + D + RGF FV F + D+V ++ H++ G+ V + A P
Sbjct: 142 FQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALP 199
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDD 50
D+ + RG F+ F D V+ +++ H+L G V V +A PK++D
Sbjct: 156 DKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQND 203
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 103 KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRR 162
K+F+G L + T ++LR YF ++G + D+ + KDP RGFGF++F + D V +
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 163 SHEICGQQVAIDSATPLDD 181
H + G+ + A P D+
Sbjct: 220 QHILDGKVIDPKRAIPRDE 238
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 49/177 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDTHELGGSTVVVDRATPKEDDFRPVGRMSHGGY 62
KD + RG GF++F SV+ ++ H L G + RA P+++
Sbjct: 192 KDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDE------------- 238
Query: 63 GAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYF 122
Q KIFVG + + ++ +F
Sbjct: 239 -----------------------------------QDKTGKIFVGGIGPDVRPKEFEEFF 263
Query: 123 SRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSRRSH-EICGQQVAIDSATP 178
S++G I+D + D RGFGFVT+ DRV + + +++ I A P
Sbjct: 264 SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 320
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 44/176 (25%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-------- 119
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +LR Y
Sbjct: 120 ----GAHLTV------------------------------KKIFVGGIKEDTEEYNLRDY 145
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 176
F ++G+I + V +D + RGF FVTF + D+ V ++ H I G + A
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 159
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 160 SRRSHEICGQQVAIDSATPLDDA 182
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D+ S RG F+TF D+V+ ++V H + G V +A K++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 44/176 (25%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-------- 119
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +LR Y
Sbjct: 120 ----GAHLTV------------------------------KKIFVGGIKEDTEEYNLRDY 145
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 176
F ++G+I + V +D + RGF FVTF + D+ V ++ H I G + A
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 159
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 160 SRRSHEICGQQVAIDSATPLDDA 182
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D+ S RG F+TF D+V+ ++V H + G V +A K++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 44/176 (25%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMV-DTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T++ + V+ M H++ G V RA +ED +P
Sbjct: 68 RDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKP-------- 119
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ +LR Y
Sbjct: 120 ----GAHLTV------------------------------KKIFVGGIKEDTEEYNLRDY 145
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 176
F ++G+I + V +D + RGF FVTF + D+ V ++ H I G + A
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA--EEVVADRV 159
+K+F+G L E T + LR +F ++G + D V +DP+ RGFGFVT++ EEV A +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA-AM 93
Query: 160 SRRSHEICGQQVAIDSATPLDDA 182
R H++ G+ V A +D+
Sbjct: 94 CARPHKVDGRVVEPKRAVSREDS 116
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
+D+ S RG F+TF D+V+ ++V H + G V +A K++
Sbjct: 159 EDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQE 206
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVSR 161
+K+F+G L T + L+ +F ++G I+DV V KDPK RGFGF+T+++ + D
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 162 -RSHEICGQQVAIDSATP 178
R H+I G+ V A P
Sbjct: 84 ARPHKIDGRTVEPKRAVP 101
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 44/181 (24%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
KD +K RG GFIT++ + ++N H++ G TV RA P+++ P
Sbjct: 57 KDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSP-------- 108
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
NA GA KK+FVG L + E LR Y
Sbjct: 109 ----NA-----------GATV-------------------KKLFVGGLRDDHDEECLREY 134
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATPLD 180
F FG+I+ V + D RGF F+ F + D++ +++H I + + + A
Sbjct: 135 FKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQ 194
Query: 181 D 181
D
Sbjct: 195 D 195
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 160
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 161 RRSHEICGQQVAIDSATP 178
R H+I + I A P
Sbjct: 175 SRYHQIGSGKCEIKVAQP 192
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVA 156
+Q+ K+F+G L + + +DL Y SRFG ++D + DP RGFGFV F +
Sbjct: 25 NQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASV 84
Query: 157 DRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMM 190
++V + H++ G+ + A L P + +
Sbjct: 85 EKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFV 119
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 44/177 (24%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAY 65
+K R GF+T+++ + + M + H + G+TV + RA +ED RP GA+
Sbjct: 44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP---------GAH 94
Query: 66 NAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRF 125
KK+FVG L + DL +FS+F
Sbjct: 95 AKV---------------------------------KKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 126 GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATPLDD 181
G + + D + RGFGFV F AD+ + + H I G +V + A P +D
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEV 154
E+SQ K+F+G L + + LR +F FG + D V +P+ R FGFVT++
Sbjct: 2 ENSQLC--KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVE 59
Query: 155 VADRVSRRS-HEICGQQVAIDSATPLDDA 182
AD S H + G V + A +D+
Sbjct: 60 EADAAMAASPHAVDGNTVELKRAVSREDS 88
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENL-MVDTHELGGSTVVVDRATPKED 49
D+ S RG GF+ F + D+ + +V H + G V V +A PKED
Sbjct: 132 DKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 83 LYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTG- 141
+ DH GSF G S + K+FVG +P+ AT E++R YF + G +L+V + KD KRTG
Sbjct: 102 ISDH-GSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD-KRTGQ 159
Query: 142 HRGFGFVTFAEEVVADRVSRRSH 164
+G FV +A ADR R H
Sbjct: 160 QQGCCFVKYATSKDADRAIRALH 182
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 91 YGRGESSQRIGK---KIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGF 147
Y GE +RIG K+FVG L ++AT +++ F +FG + DVY+ +D R RG GF
Sbjct: 198 YADGER-ERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQS-RGCGF 255
Query: 148 VTFAEEVVA 156
V ++ + A
Sbjct: 256 VKYSSKETA 264
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 43/158 (27%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+T+ S D V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ + LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEDHLREY 124
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV 159
F ++G+I + + D RGF FVTF + D++
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKI 162
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTF-AEEVVADRVS 160
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+ + + V ++
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMT 73
Query: 161 RRSHEICGQQVAIDSATPLDDAGPSQNFMMNAAETFGGYGGP-----MRTYGRMYGSLDF 215
R H++ G+ V A +D+ + GG +R Y YG ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEV 133
Query: 216 DDWGYGMGSGR 226
+ GSG+
Sbjct: 134 IEIMTDRGSGK 144
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVG-RMSHGG 61
D+GS RG F+TF DSV+ +++ H + V +A K++ G + GG
Sbjct: 139 DRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQEMASVSGSQRERGG 198
Query: 62 YGAY 65
G Y
Sbjct: 199 SGNY 202
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 44/177 (24%)
Query: 7 SKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGGYGAY 65
+K R GF+T+++ + + M + H + G+TV + RA +ED RP GA+
Sbjct: 44 TKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARP---------GAH 94
Query: 66 NAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRYFSRF 125
KK+FVG L + DL +FS+F
Sbjct: 95 AKV---------------------------------KKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 126 GRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRVS-RRSHEICGQQVAIDSATPLDD 181
G + + D + RGFGFV F AD+ + + H I G +V + A P +D
Sbjct: 122 GAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 95 ESSQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEV 154
E+SQ K+F+G L + + LR +F FG + D V +P+ R FGFVT++
Sbjct: 2 ENSQLC--KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVE 59
Query: 155 VADRVSRRS-HEICGQQVAIDSATPLDDA 182
AD S H + G V + A +D+
Sbjct: 60 EADAAMAASPHAVDGNTVELKRAVSREDS 88
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVEN-LMVDTHELGGSTVVVDRATPKED 49
D+ S RG GF+ F S D+ + +V H + G V V +A PKED
Sbjct: 132 DKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 160
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 161 RRSHEICGQQVAIDSATP 178
R H+I + I A P
Sbjct: 174 SRYHQIGSGKCEIKVAQP 191
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 97 SQRIGKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVA 156
+Q+ K+F+G L + + +DL Y SRFG ++D + DP RGFGFV F +
Sbjct: 24 NQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASV 83
Query: 157 DRV-SRRSHEICGQQVAIDSATPLDDAGPSQNFMM 190
D+V + H++ G+ + A L P + +
Sbjct: 84 DKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFV 118
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+P D + RG FIT+ + V+ L+ H++G + A PKE
Sbjct: 145 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 193
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 160
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 161 RRSHEICGQQVAIDSATPLDDAG 183
R H I G+ V A +++G
Sbjct: 69 ARPHSIDGRVVEPKRAVAREESG 91
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 44/187 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 42 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP-------- 93
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 94 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLRDY 119
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 180
F +G+I + + D + RGFGFVTF + D+ V ++ H I G + A
Sbjct: 120 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQ 179
Query: 181 DAGPSQN 187
+ Q+
Sbjct: 180 EMQEVQS 186
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 160
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 161 RRSHEICGQQVAIDSATPLDDAG 183
R H I G+ V A +++G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 74/187 (39%), Gaps = 44/187 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 54 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP-------- 105
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 106 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLRDY 131
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV-SRRSHEICGQQVAIDSATPLD 180
F +G+I + + D + RGFGFVTF + D++ ++ H I G + A
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKALSRQ 191
Query: 181 DAGPSQN 187
+ Q+
Sbjct: 192 EMQEVQS 198
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 160
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 161 RRSHEICGQQVAIDSATPLDDAG 183
R H I G+ V A +++G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 44/187 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 54 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP-------- 105
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 106 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLRDY 131
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 180
F +G+I + + D + RGFGFVTF + D+ V ++ H I G + A
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQ 191
Query: 181 DAGPSQN 187
+ Q+
Sbjct: 192 EMQEVQS 198
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 160
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 161 RRSHEICGQQVAIDSATPLDDAG 183
R H I G+ V A +++G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 44/187 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 54 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP-------- 105
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 106 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLRDY 131
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 180
F +G+I + + D + RGFGFVTF + D+ V ++ H I G + A
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQ 191
Query: 181 DAGPSQN 187
+ Q+
Sbjct: 192 EMQEVQS 198
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFA-EEVVADRVS 160
KK+FVG L + + E ++ YF FG I ++ +P D K RGF F+T+ EE V +
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 161 RRSHEICGQQVAIDSATP 178
R H+I + I A P
Sbjct: 196 SRYHQIGSGKCEIKVAQP 213
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 101 GKKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADRV- 159
G K+F+G L + + +DL Y SRFG ++D + DP RGFGFV F + D+V
Sbjct: 50 GNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL 109
Query: 160 SRRSHEICGQQVAIDSATPLDDAGPSQNFMM 190
+ H++ G+ + A L P + +
Sbjct: 110 ELKEHKLDGKLIDPKRAKALKGKEPPKKVFV 140
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MPKDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKE 48
+P D + RG FIT+ + V+ L+ H++G + A PKE
Sbjct: 167 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 215
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVAD-RVS 160
+K+F+G L E T E LR Y+ ++G++ D V +DP RGFGFVTF+ D ++
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 161 RRSHEICGQQVAIDSATPLDDAG 183
R H I G+ V A +++G
Sbjct: 81 ARPHSIDGRVVEPKRAVAREESG 103
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 44/187 (23%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D SK RG GF+TF+S V+ M H + G V RA +E+ +P
Sbjct: 54 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP-------- 105
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KK+FVG + ++ LR Y
Sbjct: 106 ----GAHVTV------------------------------KKLFVGGIKEDTEEHHLRDY 131
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSATPLD 180
F +G+I + + D + RGFGFVTF + D+ V ++ H I G + A
Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKALSRQ 191
Query: 181 DAGPSQN 187
+ Q+
Sbjct: 192 EMQEVQS 198
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 44/176 (25%)
Query: 3 KDQGSKAHRGIGFITFASADSVENLM-VDTHELGGSTVVVDRATPKEDDFRPVGRMSHGG 61
+D +K RG GF+T+A+ + V+ M H++ G V RA +ED RP
Sbjct: 47 RDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRP-------- 98
Query: 62 YGAYNAYISAATRYAALGAPTLYDHPGSFYGRGESSQRIGKKIFVGRLPQEATAEDLRRY 121
A+++ KKIFVG + ++ LR Y
Sbjct: 99 ----GAHLTV------------------------------KKIFVGGIKEDTEEHHLRDY 124
Query: 122 FSRFGRILDVYVPKDPKRTGHRGFGFVTFAEEVVADR-VSRRSHEICGQQVAIDSA 176
F ++G+I + + D RGF FVTF + D+ V ++ H + G + A
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 102 KKIFVGRLPQEATAEDLRRYFSRFGRILDVYVPKDPKRTGHRGFGFVTFAE-EVVADRVS 160
+K+F+G L E T E LR +F ++G + D V +DP RGFGFVT+A E V ++
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 161 RRSHEICGQQVAIDSATPLDDA 182
R H++ G+ V A +D+
Sbjct: 74 ARPHKVDGRVVEPKRAVSREDS 95
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 DQGSKAHRGIGFITFASADSVENLMVDT-HELGGSTVVVDRATPKED 49
D+GS RG F+TF +SV+ +++ H + G V +A K++
Sbjct: 139 DRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,687,803
Number of Sequences: 539616
Number of extensions: 4435180
Number of successful extensions: 11104
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 9788
Number of HSP's gapped (non-prelim): 1431
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)